Query 047271
Match_columns 104
No_of_seqs 114 out of 671
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q9j_A PAPA5, polyketide synth 96.5 0.017 5.8E-07 43.1 8.9 72 14-88 341-414 (422)
2 2deb_A CPT II, carnitine O-pal 92.1 1.2 4.1E-05 36.9 9.9 73 9-94 576-649 (653)
3 2jgp_A Tyrocidine synthetase 3 91.8 1 3.4E-05 34.7 8.6 77 13-89 428-508 (520)
4 1nm8_A Carnitine O-acetyltrans 91.5 1.3 4.3E-05 36.5 9.3 76 8-93 523-599 (616)
5 1t1u_A Choline O-acetyltransfe 90.7 2 6.7E-05 35.5 9.7 75 8-92 539-614 (639)
6 1l5a_A Amide synthase, VIBH; n 90.6 2.1 7.3E-05 31.8 9.2 72 15-90 332-407 (436)
7 3fot_A 15-O-acetyltransferase; 87.7 3.3 0.00011 33.2 8.8 42 47-89 475-516 (519)
8 1f8v_D Mature capsid protein g 81.7 0.12 4.2E-06 28.0 -1.5 19 9-27 10-28 (40)
9 1xl7_A COT, peroxisomal carnit 80.6 12 0.00041 30.6 9.3 70 10-92 536-608 (612)
10 1nov_D Nodamura virus coat pro 76.9 0.17 5.9E-06 27.9 -1.9 18 9-26 10-27 (44)
11 1dpb_A Dihydrolipoyl-transacet 72.0 14 0.00049 26.5 6.8 27 59-87 208-234 (243)
12 2z2q_B Coat protein gamma; wil 70.3 0.36 1.2E-05 26.6 -1.6 19 8-26 9-27 (44)
13 4hvm_A Tlmii; PSI-biology, mid 70.1 19 0.00064 27.2 7.4 43 47-89 416-459 (493)
14 2ii3_A Lipoamide acyltransfera 65.4 18 0.00062 26.4 6.2 27 58-85 223-252 (262)
15 1scz_A E2, dihydrolipoamide su 63.8 13 0.00045 26.5 5.1 54 11-75 145-211 (233)
16 3rqc_A Probable lipoamide acyl 58.3 20 0.00068 25.4 5.3 54 11-75 144-202 (224)
17 3f42_A Protein HP0035; helicob 58.2 24 0.00082 22.2 5.1 35 58-92 48-82 (99)
18 3mae_A 2-oxoisovalerate dehydr 57.1 40 0.0014 24.5 6.8 55 11-75 159-225 (256)
19 3cla_A Type III chloramphenico 52.0 58 0.002 22.7 7.5 20 58-78 180-199 (213)
20 1j8b_A YBAB; hypothetical prot 48.7 49 0.0017 21.1 5.5 34 59-92 54-88 (112)
21 3l60_A Branched-chain alpha-ke 47.7 31 0.0011 24.9 4.9 14 58-71 204-217 (250)
22 1ybx_A Conserved hypothetical 46.5 60 0.0021 21.8 5.9 34 59-92 87-122 (143)
23 2xhg_A Tyrocidine synthetase A 40.9 93 0.0032 22.9 6.8 44 47-90 411-456 (466)
24 1ry9_A SPA15 protein, surface 37.8 60 0.0021 21.9 4.8 39 52-90 103-141 (145)
25 2l0d_A Cell surface protein; s 36.8 81 0.0028 20.1 5.6 45 25-69 40-88 (114)
26 2xga_A Surface presentation of 36.4 61 0.0021 22.1 4.6 39 52-90 111-149 (153)
27 2fm8_A Surface presentation of 36.3 70 0.0024 21.2 4.9 39 52-90 91-129 (135)
28 1q23_A Chloramphenicol acetylt 31.2 1.3E+02 0.0046 20.9 7.3 20 58-78 184-203 (219)
29 2i9d_A Chloramphenicol acetylt 27.7 1.6E+02 0.0054 20.6 6.4 20 58-78 188-207 (217)
30 3qkb_A Uncharacterized protein 26.7 1.2E+02 0.0043 19.5 4.7 31 65-95 45-75 (111)
31 3ifu_A Non-structural protein; 25.3 32 0.0011 23.6 1.7 22 7-28 149-170 (180)
32 1vr7_A Adometdc, samdc, S-aden 24.4 1.5E+02 0.0051 19.7 4.9 37 48-85 77-113 (142)
33 2rrl_A FLIK, flagellar HOOK-le 22.8 1.9E+02 0.0065 19.8 6.4 54 37-99 93-146 (169)
34 2jvx_A NF-kappa-B essential mo 22.6 45 0.0015 16.3 1.5 19 65-83 8-26 (28)
35 1pzr_A Erythronolide synthase; 21.5 93 0.0032 17.7 3.0 23 70-92 27-49 (60)
36 1tu1_A Hypothetical protein PA 21.4 59 0.002 21.2 2.4 46 47-92 23-69 (148)
37 1uwd_A Hypothetical protein TM 21.1 1.1E+02 0.0038 18.4 3.6 31 57-87 42-72 (103)
38 2l2i_B Krueppel-like factor 1; 20.7 16 0.00055 19.6 -0.4 12 14-25 28-39 (42)
No 1
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=96.50 E-value=0.017 Score=43.09 Aligned_cols=72 Identities=8% Similarity=-0.007 Sum_probs=55.6
Q ss_pred eEEEeccCCCccceEEcCceEeEEec-cccCCCceeEEE-EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 047271 14 TMAFSNVVGPLEEISFYGHPMAYLAP-SVYGHPHALTIH-FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIK 88 (104)
Q Consensus 14 ~~viSNVPGP~~pl~l~Ga~v~~~~p-~~~~~~~~L~i~-v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~ 88 (104)
.++++|.+++.....+.|.++..+.. .....+..+.+. +.+++|.+.+.+ .+++ .+.+.+.+.|...++++.
T Consensus 341 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-y~~~--~~~~~l~~~~~~~L~~l~ 414 (422)
T 1q9j_A 341 LVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEH-HGHI--AEPGKSLEAIRSLLCTVP 414 (422)
T ss_dssp CEEEECCCCCCSCCCCTTCEEEEEEEEECCBSSCCCCEEEEEEETTEEEEEE-ESSC--SSHHHHHHHHHHHHHHTT
T ss_pred eEEEecCCcCCCCCCCCCceeEeeecccccCCCCCceEEEEEeeCCeEEEEE-ecCc--cchHHHHHHHHHHHHHhh
Confidence 57889999887777889988885332 211233367777 789999999999 9998 888888888888887764
No 2
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=92.14 E-value=1.2 Score=36.91 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=52.8
Q ss_pred hcCCceEEEeccCCCccceEEcCceEe-EEeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047271 9 VLSNTTMAFSNVVGPLEEISFYGHPMA-YLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVI 87 (104)
Q Consensus 9 ~~~~~~~viSNVPGP~~pl~l~Ga~v~-~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL 87 (104)
...+.-+..||+|+|.. .. .++|+.+ . |.+|+=.--.+.+.|.+++=+ --|.++|.++|++++.||
T Consensus 576 ~~~~~~LSTS~~~~~~~--------~~~gfgPv~~-d--GyGi~Y~i~~~~i~f~iSs~~--~t~~~~F~~~L~~al~dm 642 (653)
T 2deb_A 576 QMNHNILSTSTLNSPAV--------SLGGFAPVVP-D--GFGIAYAVHDDWIGCNVSSYS--GRNAREFLHCVQKCLEDI 642 (653)
T ss_dssp HHTSCSEEEEECCCTTE--------EEEECCCSST-T--CEEEEEEECSSCEEEEEEECT--TSCHHHHHHHHHHHHHHH
T ss_pred hhCCcEEeecCCCCCcc--------ccceeeccCC-C--ceEEEEEecCCeEEEEEEeCC--CCCHHHHHHHHHHHHHHH
Confidence 34566778899999752 12 2777533 2 455555556789999988865 448999999999999999
Q ss_pred HHHHhhc
Q 047271 88 KDCVVER 94 (104)
Q Consensus 88 ~~a~~~~ 94 (104)
.+.....
T Consensus 643 ~~ll~~~ 649 (653)
T 2deb_A 643 FDALEGK 649 (653)
T ss_dssp HHHHTTC
T ss_pred HHHHhcc
Confidence 9977543
No 3
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=91.81 E-value=1 Score=34.71 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=53.2
Q ss_pred ceEEEeccCCCccceEEcCceEeEEecccc--CCCceeEEEEeeeCCEEEEEEEecCCCCCC--HHHHHHHHHHHHHHHH
Q 047271 13 TTMAFSNVVGPLEEISFYGHPMAYLAPSVY--GHPHALTIHFQSYVNKMTFCVAVDPNVIPD--PHLLCKDIEESLKVIK 88 (104)
Q Consensus 13 ~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~--~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD--~~~l~~~l~~al~eL~ 88 (104)
++++++..+++.....+.|.++..+..... .....|.+.+..++|.+.+.+..|++..++ .+.+.+.|...++++.
T Consensus 428 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~ 507 (520)
T 2jgp_A 428 FDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIV 507 (520)
T ss_dssp CSEEEEEECCCCSCCCCSSEEEEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCccccCCCceeEEeecCCCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHH
Confidence 345666666666677788877764321111 222378899999999999999999999974 5566666666666665
Q ss_pred H
Q 047271 89 D 89 (104)
Q Consensus 89 ~ 89 (104)
+
T Consensus 508 ~ 508 (520)
T 2jgp_A 508 Q 508 (520)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=91.54 E-value=1.3 Score=36.49 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=53.9
Q ss_pred hhcCCceEEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHH
Q 047271 8 RVLSNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNV-IPDPHLLCKDIEESLKV 86 (104)
Q Consensus 8 r~~~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~-vpD~~~l~~~l~~al~e 86 (104)
....+.-+..||+|+|... .-.++|+.+ . |.+|+=.--.+.+.|.+++=+.. --|.++|.++|++++.|
T Consensus 523 ~~~~~~~LSTSq~~~~~~~-------~~gfgPv~~-d--GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~d 592 (616)
T 1nm8_A 523 AIAMHFHLSTSQVPAKTDC-------VMFFGPVVP-D--GYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLD 592 (616)
T ss_dssp HHHTCCSEEEEECCCSSSC-------EEECCCSST-T--CEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHH
T ss_pred hhcCCCEEeecCCCCCccC-------ceEEecCCC-C--eeEEEEEecCCeEEEEEEeCCCCccccHHHHHHHHHHHHHH
Confidence 3456677888999997511 113777533 2 55665555688999998884433 24899999999999999
Q ss_pred HHHHHhh
Q 047271 87 IKDCVVE 93 (104)
Q Consensus 87 L~~a~~~ 93 (104)
|.+....
T Consensus 593 m~~ll~~ 599 (616)
T 1nm8_A 593 MRALLQS 599 (616)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9997763
No 5
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=90.66 E-value=2 Score=35.51 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=53.2
Q ss_pred hhcCCceEEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHH
Q 047271 8 RVLSNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNV-IPDPHLLCKDIEESLKV 86 (104)
Q Consensus 8 r~~~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~-vpD~~~l~~~l~~al~e 86 (104)
....+.-+..||+|+|... .-.++|+.+ . |.+|+=.--.+.+.|.+++=+.. --|.++|.++|++++.+
T Consensus 539 ~~~~~~~LSTSq~~~~~~~-------~~gfgPv~~-d--GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~d 608 (639)
T 1t1u_A 539 LMSNRFVLSTSQVPTTMEM-------FCCYGPVVP-N--GYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVD 608 (639)
T ss_dssp HHHTCCSEEEEECCCSSSE-------EEECCCSST-T--CEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHH
T ss_pred hhhCCCEEEecCCCCCccc-------cceEcccCC-C--ceEEEEEEcCCeEEEEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 3456677888999998421 013777533 2 55555555688999998885433 24899999999999999
Q ss_pred HHHHHh
Q 047271 87 IKDCVV 92 (104)
Q Consensus 87 L~~a~~ 92 (104)
|.+...
T Consensus 609 m~~ll~ 614 (639)
T 1t1u_A 609 MRDLCS 614 (639)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 6
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=90.64 E-value=2.1 Score=31.80 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=49.5
Q ss_pred EEEeccCCCccceEEcCceEeEEec-cccCCCceeEEEEe-eeCCEEEEEEEecCCCCCC--HHHHHHHHHHHHHHHHHH
Q 047271 15 MAFSNVVGPLEEISFYGHPMAYLAP-SVYGHPHALTIHFQ-SYVNKMTFCVAVDPNVIPD--PHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 15 ~viSNVPGP~~pl~l~Ga~v~~~~p-~~~~~~~~L~i~v~-SY~g~l~~~v~ad~~~vpD--~~~l~~~l~~al~eL~~a 90 (104)
.+++..+.+.. .++|.++..... ..... .|.+.+. +++|.+.+.+..+++..++ .+.+.+.|...++++.+.
T Consensus 332 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~ 407 (436)
T 1l5a_A 332 PFINILPFESP--HFADCQTELKVLASGSAE--GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLAR 407 (436)
T ss_dssp SEEEEECCCCC--CCTTCEEEEEEEEECCCC--SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccCcc--ccCCCeeEEEecCCCCcc--ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444433 678888874221 11222 6788887 6899999999999999975 677777777777777654
No 7
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=87.69 E-value=3.3 Score=33.19 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=36.0
Q ss_pred eeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKD 89 (104)
Q Consensus 47 ~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~ 89 (104)
.+.++++||+|+++|.+.-+.... |.+.+.+.+++-.++|..
T Consensus 475 ~~~~~~~Tf~g~L~l~~~yn~a~~-~~e~v~~~l~~v~~~L~~ 516 (519)
T 3fot_A 475 YLAIRLDSWRDASTLNIIYNDANY-TEAEVQKYLQSIVEFMLA 516 (519)
T ss_dssp SCEEEEEEETTEEEEEEEEETTTC-CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCEEEEEEEeccccC-CHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999888 788877777777777653
No 8
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=81.71 E-value=0.12 Score=28.00 Aligned_cols=19 Identities=32% Similarity=0.516 Sum_probs=3.6
Q ss_pred hcCCceEEEeccCCCccce
Q 047271 9 VLSNTTMAFSNVVGPLEEI 27 (104)
Q Consensus 9 ~~~~~~~viSNVPGP~~pl 27 (104)
+++......||||||-...
T Consensus 10 ilks~l~~aS~iPGPVG~~ 28 (40)
T 1f8v_D 10 VLNQISGTLSVIPGPVGTI 28 (40)
T ss_dssp HHHHTCCC-----------
T ss_pred HHHHHHHHHhcCCCchhHH
Confidence 3344445689999997543
No 9
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=80.60 E-value=12 Score=30.61 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=48.9
Q ss_pred cCCceEEEeccCCCccceEEcCceEe--EEeccccCCCceeEEEEeeeCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHH
Q 047271 10 LSNTTMAFSNVVGPLEEISFYGHPMA--YLAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNV-IPDPHLLCKDIEESLKV 86 (104)
Q Consensus 10 ~~~~~~viSNVPGP~~pl~l~Ga~v~--~~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~-vpD~~~l~~~l~~al~e 86 (104)
..+.-+.-|++ |+. .. .++|+.+ . |.+|+=.--.+.+.|.+++=+.. --|.++|.++|++++.|
T Consensus 536 ~~~~~LSTS~~-~~~---------~~~~gfgPv~~-d--GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~d 602 (612)
T 1xl7_A 536 GGNFVLSTSLV-GYL---------RVQGVVVPMVH-N--GYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHD 602 (612)
T ss_dssp TTCCSEEEEEC-CSS---------SCCCBCCCSST-T--CEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEecCCC-CCC---------CCCcEEeccCC-C--eEEEEEEEcCCeEEEEEEecCCCCcccHHHHHHHHHHHHHH
Confidence 34555777888 643 22 2777533 2 55665555689999999984332 34799999999999999
Q ss_pred HHHHHh
Q 047271 87 IKDCVV 92 (104)
Q Consensus 87 L~~a~~ 92 (104)
|.+...
T Consensus 603 m~~ll~ 608 (612)
T 1xl7_A 603 MIQLMN 608 (612)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998654
No 10
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=76.86 E-value=0.17 Score=27.95 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=11.8
Q ss_pred hcCCceEEEeccCCCccc
Q 047271 9 VLSNTTMAFSNVVGPLEE 26 (104)
Q Consensus 9 ~~~~~~~viSNVPGP~~p 26 (104)
+++......||||||-..
T Consensus 10 ilks~l~~aS~iPGPVG~ 27 (44)
T 1nov_D 10 ILKSGLNFASTIPGPVGV 27 (44)
T ss_pred HHHHHHHHHhcCCCchhH
Confidence 334444467999999753
No 11
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=71.99 E-value=14 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=17.6
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047271 59 MTFCVAVDPNVIPDPHLLCKDIEESLKVI 87 (104)
Q Consensus 59 l~~~v~ad~~~vpD~~~l~~~l~~al~eL 87 (104)
+.+++++|..++ |-...++ |-..++++
T Consensus 208 m~lsls~DHRvi-DGa~aa~-Fl~~lk~~ 234 (243)
T 1dpb_A 208 LPLSLSYDCRVI-NGAAAAR-FTKRLGDL 234 (243)
T ss_dssp EEEEEEEETTTS-CHHHHHH-HHHHHHHH
T ss_pred EEEEEEECcccc-cHHHHHH-HHHHHHHH
Confidence 789999999999 5444433 33334443
No 12
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=70.27 E-value=0.36 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.4
Q ss_pred hhcCCceEEEeccCCCccc
Q 047271 8 RVLSNTTMAFSNVVGPLEE 26 (104)
Q Consensus 8 r~~~~~~~viSNVPGP~~p 26 (104)
|+++......||+|||-..
T Consensus 9 ~ilks~l~a~S~iPGPVG~ 27 (44)
T 2z2q_B 9 SIIKSSLAAASNIPGPIGV 27 (44)
T ss_pred HHHHHHHHHHhcCCCchhH
Confidence 3344444567999999754
No 13
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=70.07 E-value=19 Score=27.24 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=28.4
Q ss_pred eeEEEEeeeCCEEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYVNKMTFCVAVDPNVIP-DPHLLCKDIEESLKVIKD 89 (104)
Q Consensus 47 ~L~i~v~SY~g~l~~~v~ad~~~vp-D~~~l~~~l~~al~eL~~ 89 (104)
.+.+.+..++|.+.+.+..+++..+ ..+.+.+.|.+.++++.+
T Consensus 416 ~l~l~v~~~~~~l~~~~~y~~~l~~~~i~~l~~~~~~~L~~~~~ 459 (493)
T 4hvm_A 416 TTDLSVGELGEDMVIVLDQRRTHPAGGGSALLDGLDAAMAQAVA 459 (493)
T ss_dssp CEEEEEEEETTEEEEEEEECC-------CHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCeEEEEEEEccccCHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999662 144555666665555543
No 14
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=65.37 E-value=18 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=17.7
Q ss_pred EEEEEEEecCCCCCCHHH---HHHHHHHHHH
Q 047271 58 KMTFCVAVDPNVIPDPHL---LCKDIEESLK 85 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD~~~---l~~~l~~al~ 85 (104)
.+.+++++|..++ |-.. |.+.|.+-++
T Consensus 223 ~m~lsls~DHRvi-DGa~aa~Fl~~lk~~Le 252 (262)
T 2ii3_A 223 IMNVSWSADHRII-DGATVSRFSNLWKSYLE 252 (262)
T ss_dssp EEEEEEEEETTTC-CHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEECccee-cHHHHHHHHHHHHHHHh
Confidence 5789999999999 4433 4444444333
No 15
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=63.81 E-value=13 Score=26.54 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCceEEEeccCCCccceEEcCceEeEEeccccCCCce--eEEEEeee-----CC------EEEEEEEecCCCCCCHHH
Q 047271 11 SNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHA--LTIHFQSY-----VN------KMTFCVAVDPNVIPDPHL 75 (104)
Q Consensus 11 ~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~--L~i~v~SY-----~g------~l~~~v~ad~~~vpD~~~ 75 (104)
...++.|||++.- |. .++.|+. ..||. |+++-+.. +| .+.+++++|..++ |-..
T Consensus 145 ~ggtftISnlG~~-------G~--~~~tpIi-n~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRvi-DGa~ 211 (233)
T 1scz_A 145 TGGNFTITNGGVF-------GS--LMSTPII-NPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLI-DGRE 211 (233)
T ss_dssp SCCSEEEEEGGGG-------TC--CCCCCCC-CTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTC-CHHH
T ss_pred CCCEEEEEeCCCC-------Cc--cceEccc-CCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceee-chHH
Confidence 4578999999984 22 2344421 12222 33333332 34 3789999999999 5443
No 16
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=58.30 E-value=20 Score=25.41 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCceEEEeccCCCccceEEcCceEeEEeccccCCCceeEEEEeeeC-----CEEEEEEEecCCCCCCHHH
Q 047271 11 SNTTMAFSNVVGPLEEISFYGHPMAYLAPSVYGHPHALTIHFQSYV-----NKMTFCVAVDPNVIPDPHL 75 (104)
Q Consensus 11 ~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~~~~~~~L~i~v~SY~-----g~l~~~v~ad~~~vpD~~~ 75 (104)
...++.|||++.-. +.++.|+.. .||.--+++=.+. -.+.+++++|..++ |-..
T Consensus 144 ~ggtftISnlG~~G---------~~~~tpiin-~pq~aIl~vG~~~~~p~r~~m~lsls~DHRvi-DGa~ 202 (224)
T 3rqc_A 144 QDSTFTITNVGTIG---------GIMSTPIIN-YPEVAILGVHRILEREGRKYMYLSLSCDHRLI-DGAV 202 (224)
T ss_dssp CCCSEEEEECTTTC---------CSEEECCCC-TTBSEEEEECCCEEETTEEECCEEEEEETTTS-CHHH
T ss_pred CCCEEEEEcCCcCC---------ccceEeccC-CCCceEEEecccEEECCceEEEEEEEecccee-cHHH
Confidence 45689999998542 234556321 2233233333332 24789999999999 5443
No 17
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=58.23 E-value=24 Score=22.22 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 58 KMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
.=...+.-||+++.|++.|.+.+..++++-.+.+.
T Consensus 48 ~ev~~i~Idp~~~eD~E~LeDLI~aA~ndA~~k~~ 82 (99)
T 3f42_A 48 GELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVE 82 (99)
T ss_dssp SCEEEEEECGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 33457788999999999999999999988766554
No 18
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=57.12 E-value=40 Score=24.45 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=31.0
Q ss_pred CCceEEEeccCCCccceEEcCceEeEEeccc-cCCCceeEEEEeee-----CC------EEEEEEEecCCCCCCHHH
Q 047271 11 SNTTMAFSNVVGPLEEISFYGHPMAYLAPSV-YGHPHALTIHFQSY-----VN------KMTFCVAVDPNVIPDPHL 75 (104)
Q Consensus 11 ~~~~~viSNVPGP~~pl~l~Ga~v~~~~p~~-~~~~~~L~i~v~SY-----~g------~l~~~v~ad~~~vpD~~~ 75 (104)
...+++|||++.-. +.++.|+. .+..--|+++-+.- +| .+.+++++|..++ |-..
T Consensus 159 ~ggTftISNlG~~G---------~~~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRvi-DGa~ 225 (256)
T 3mae_A 159 EGGTFTVNSTGSFG---------SVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRIL-DGLL 225 (256)
T ss_dssp SCCSEEEECGGGGT---------CSEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTC-CHHH
T ss_pred CCCEEEEecCCCCC---------ccceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccc-cHHH
Confidence 45689999998432 22344422 22111233333221 45 4679999999999 5444
No 19
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=51.95 E-value=58 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.0
Q ss_pred EEEEEEEecCCCCCCHHHHHH
Q 047271 58 KMTFCVAVDPNVIPDPHLLCK 78 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD~~~l~~ 78 (104)
.+.+++++|..++ |-...++
T Consensus 180 ~m~lsls~DHRvv-DG~~aa~ 199 (213)
T 3cla_A 180 LLPLSVQVHHAVC-DGFHVAR 199 (213)
T ss_dssp EEEEEEEEETTTC-CHHHHHH
T ss_pred EEEEEEEEccccc-ChHHHHH
Confidence 3799999999999 5544443
No 20
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=48.74 E-value=49 Score=21.10 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=26.6
Q ss_pred EEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 047271 59 MTFCVAVDPNVI-PDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 59 l~~~v~ad~~~v-pD~~~l~~~l~~al~eL~~a~~ 92 (104)
-...|..|++++ .|.+.|.+.+..++++-.+.+.
T Consensus 54 ev~~i~Idp~~~~~d~E~LedlI~aA~ndA~~ka~ 88 (112)
T 1j8b_A 54 NCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAE 88 (112)
T ss_dssp CEEEEEECGGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 335667788888 7999999999999888766554
No 21
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=47.73 E-value=31 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.1
Q ss_pred EEEEEEEecCCCCC
Q 047271 58 KMTFCVAVDPNVIP 71 (104)
Q Consensus 58 ~l~~~v~ad~~~vp 71 (104)
.+.+++++|..++.
T Consensus 204 ~m~lsLs~DHRviD 217 (250)
T 3l60_A 204 TMTLTCVFDHRVVD 217 (250)
T ss_dssp EEEEEEEEETTTCC
T ss_pred EeEEEEEecccccC
Confidence 46899999999994
No 22
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=46.46 E-value=60 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.3
Q ss_pred EEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHh
Q 047271 59 MTFCVAVDPNVI--PDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 59 l~~~v~ad~~~v--pD~~~l~~~l~~al~eL~~a~~ 92 (104)
-...|..|++++ .|.+.|.+.+.+++++-.+.+.
T Consensus 87 ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~ 122 (143)
T 1ybx_A 87 DIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKAD 122 (143)
T ss_dssp CEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 335667788888 5889999999999888766554
No 23
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=40.90 E-value=93 Score=22.90 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=33.3
Q ss_pred eeEEEEeeeCCEEEEEEEecCCCCCC--HHHHHHHHHHHHHHHHHH
Q 047271 47 ALTIHFQSYVNKMTFCVAVDPNVIPD--PHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 47 ~L~i~v~SY~g~l~~~v~ad~~~vpD--~~~l~~~l~~al~eL~~a 90 (104)
.|.+.+...+|.+.+.+..+++..+. .+.+.+.|...++++.+.
T Consensus 411 ~l~~~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~ 456 (466)
T 2xhg_A 411 ALNITGLIEGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAH 456 (466)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888899999999999999963 455666666666665543
No 24
>1ry9_A SPA15 protein, surface presentation of antigens protein SPAK; alpha/beta fold, chaperone; 1.82A {Shigella flexneri} SCOP: d.198.1.1
Probab=37.84 E-value=60 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=34.8
Q ss_pred EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 52 FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
+-.++|.+.+.....++.+-|++.|++.+++=|+.|.+-
T Consensus 103 l~~~d~~LeL~A~v~~~~L~d~~~Fa~aLe~Ff~~l~~~ 141 (145)
T 1ry9_A 103 LHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEIL 141 (145)
T ss_dssp EEECSSEEEEEEEECGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcEEEEEEEcHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 336899999999999999999999999999999988653
No 25
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=36.85 E-value=81 Score=20.08 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=29.9
Q ss_pred cceEEcCceEeE--EeccccCCCceeEEEEeee--CCEEEEEEEecCCC
Q 047271 25 EEISFYGHPMAY--LAPSVYGHPHALTIHFQSY--VNKMTFCVAVDPNV 69 (104)
Q Consensus 25 ~pl~l~Ga~v~~--~~p~~~~~~~~L~i~v~SY--~g~l~~~v~ad~~~ 69 (104)
..+|++|..+.. +..+..|...-+.++...- .|.-.+.+.+|++-
T Consensus 40 V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~n 88 (114)
T 2l0d_A 40 VSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPEN 88 (114)
T ss_dssp EEEEETTEEEEEEEESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTTC
T ss_pred EEEEECCEEEcceecccccCCCEEEEEEEEeecCcCceEEEEEEECCCC
Confidence 358889988875 4346666632333333332 69999999999974
No 26
>2xga_A Surface presentation of antigens protein SPAK; chaperone, virulence factor; HET: MTN; 2.30A {Shigella flexneri}
Probab=36.36 E-value=61 Score=22.08 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=34.8
Q ss_pred EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 52 FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
+-.++|.+.+.....++.+-|++.|++.+++=|+.|.+-
T Consensus 111 l~~~d~~LeLrA~v~~~~L~d~~~Fa~aLe~Ff~~l~~~ 149 (153)
T 2xga_A 111 LHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEIL 149 (153)
T ss_dssp EEECSSEEEEEEEBCGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcEEEEEEEcHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 336899999999999999999999999999999988754
No 27
>2fm8_A Surface presentation of antigens protein SPAK; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=36.29 E-value=70 Score=21.21 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=34.7
Q ss_pred EeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047271 52 FQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDC 90 (104)
Q Consensus 52 v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a 90 (104)
+-.++|.+.+.....++.+-|++.|++.+++=|+.+..-
T Consensus 91 l~~~d~~LeL~A~v~~~~L~d~~~Fa~ale~Ff~~l~~~ 129 (135)
T 2fm8_A 91 LGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVF 129 (135)
T ss_dssp EEEETTEEEEEEEBCGGGSSSHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCcEEEEEEEcHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 336899999999999999999999999999999888653
No 28
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=31.21 E-value=1.3e+02 Score=20.90 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=15.0
Q ss_pred EEEEEEEecCCCCCCHHHHHH
Q 047271 58 KMTFCVAVDPNVIPDPHLLCK 78 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD~~~l~~ 78 (104)
.+.+++++|..++ |-...++
T Consensus 184 ~m~lsls~DHRvv-DG~~aa~ 203 (219)
T 1q23_A 184 LMPLAIQVHHAVC-DGFHVGR 203 (219)
T ss_dssp EEEEEEEEETTTC-CHHHHHH
T ss_pred EEEEEEEEEchhh-ChHHHHH
Confidence 3899999999999 5444433
No 29
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=27.66 E-value=1.6e+02 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.6
Q ss_pred EEEEEEEecCCCCCCHHHHHH
Q 047271 58 KMTFCVAVDPNVIPDPHLLCK 78 (104)
Q Consensus 58 ~l~~~v~ad~~~vpD~~~l~~ 78 (104)
.+.+++++|..++ |-...++
T Consensus 188 ~m~lsls~DHRvv-DG~~aa~ 207 (217)
T 2i9d_A 188 VMPIAMTIHHGFI-DGHHLSL 207 (217)
T ss_dssp EEEEEEEEETTTC-CHHHHHH
T ss_pred EEEEEEEecchhh-ChHHHHH
Confidence 4789999999999 6555544
No 30
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=26.72 E-value=1.2e+02 Score=19.51 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=24.6
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 047271 65 VDPNVIPDPHLLCKDIEESLKVIKDCVVERG 95 (104)
Q Consensus 65 ad~~~vpD~~~l~~~l~~al~eL~~a~~~~~ 95 (104)
...+-+..-+.+.+.+++++++|.+.+.+.+
T Consensus 45 l~s~eidey~~~~ear~eA~~rM~e~A~~lG 75 (111)
T 3qkb_A 45 LASEDIDKYNMFDQLFDEAKQKLKKKADLLE 75 (111)
T ss_dssp CCGGGTTCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred ecccccchhhhHHHHHHHHHHHHHHHHHHcC
Confidence 3334466678999999999999999887665
No 31
>3ifu_A Non-structural protein; PRRSV, NSP1, zinc finger, papain-like cysteine protease, transcription; 2.42A {Porcine reproductive and respiratorysyndrome virus}
Probab=25.31 E-value=32 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.4
Q ss_pred hhhcCCceEEEeccCCCccceE
Q 047271 7 HRVLSNTTMAFSNVVGPLEEIS 28 (104)
Q Consensus 7 ~r~~~~~~~viSNVPGP~~pl~ 28 (104)
++.+..++-++||.|-||.+..
T Consensus 149 d~pfpgathvltn~plpqq~~r 170 (180)
T 3ifu_A 149 DKPFPGATHVLTNLPLPQRPKP 170 (180)
T ss_dssp SSCCTTCCEEEECSCCSSCCCC
T ss_pred CCCCCCceeeecCCCCCCcccC
Confidence 3455677889999999998864
No 32
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=24.38 E-value=1.5e+02 Score=19.66 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=28.6
Q ss_pred eEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 047271 48 LTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLK 85 (104)
Q Consensus 48 L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~ 85 (104)
++|+.+.=-|...+=+.+|.+.+ ||+...++++++|+
T Consensus 77 IsIHTwPE~gyAavDVftCg~~~-~P~~a~~~L~~~f~ 113 (142)
T 1vr7_A 77 LTIHTWPEYGYAAIDLFTCGEDV-DPWKAFEHLKKALK 113 (142)
T ss_dssp EEEEEEGGGTEEEEEEEEESTTC-CHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCeEEEEEEccCCCC-CHHHHHHHHHHHhC
Confidence 44555555678888889988776 89999999888875
No 33
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=22.84 E-value=1.9e+02 Score=19.82 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=40.6
Q ss_pred EeccccCCCceeEEEEeeeCCEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 047271 37 LAPSVYGHPHALTIHFQSYVNKMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVVERGLIED 99 (104)
Q Consensus 37 ~~p~~~~~~~~L~i~v~SY~g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~~~~~~~~ 99 (104)
+-|--.| .|.|.+---+|++.+.|.++.. ...+.|+.++..|++...+.+.+-+
T Consensus 93 L~PpeLG---~l~V~l~~~~~q~~v~f~a~~~------~vReaLe~~lp~LRe~La~qGi~L~ 146 (169)
T 2rrl_A 93 LHPEELG---QVHISLKLDDNQAQLQMVSPHS------HVRAALEAALPMLRTQLAESGIQLG 146 (169)
T ss_dssp CSSGGGC---CEEEEEEEETTEEEEEEECCSS------HHHHHHHHTHHHHHHHHHTTTCEEE
T ss_pred ECccccC---cEEEEEEEECCEEEEEEEcCCH------HHHHHHHHHHHHHHHHHHHcCCCee
Confidence 4553344 5677776679999999999764 4468899999999999888775543
No 34
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.62 E-value=45 Score=16.30 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=15.7
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 047271 65 VDPNVIPDPHLLCKDIEES 83 (104)
Q Consensus 65 ad~~~vpD~~~l~~~l~~a 83 (104)
.++..+||+..+..++++-
T Consensus 8 vCk~q~Pd~kt~~~H~e~~ 26 (28)
T 2jvx_A 8 KCQYQAPDMDTLQIHVMEC 26 (28)
T ss_dssp TSSCEESSHHHHHHHHHHC
T ss_pred cccccCcChHHHHHHHHHH
Confidence 4667789999999998874
No 35
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=21.54 E-value=93 Score=17.73 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 047271 70 IPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 70 vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
+++.+.+.++++.+..++.++-.
T Consensus 27 m~~eeKLrdyLkrvtadL~r~Rr 49 (60)
T 1pzr_A 27 GMTEEKLRRYLKRTVTELDSVTA 49 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999886554
No 36
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=21.35 E-value=59 Score=21.16 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=31.4
Q ss_pred eeEEEEeeeCC-EEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 047271 47 ALTIHFQSYVN-KMTFCVAVDPNVIPDPHLLCKDIEESLKVIKDCVV 92 (104)
Q Consensus 47 ~L~i~v~SY~g-~l~~~v~ad~~~vpD~~~l~~~l~~al~eL~~a~~ 92 (104)
.++|=..+=.| .=..+++..++.+|+.+.+.++++..++.|++...
T Consensus 23 t~nv~~~~~~~~~g~~~lvIsR~~~~~~~~l~~~~~~q~~~l~~~l~ 69 (148)
T 1tu1_A 23 SINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLP 69 (148)
T ss_dssp CBEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHHHHHHST
T ss_pred eEEEEEcCCCCCCCceEEEEEeccCCCCCCHHHHHHHHHHHHHhhCc
Confidence 45665555333 20035556667799999999999999999987653
No 37
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=21.09 E-value=1.1e+02 Score=18.44 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.0
Q ss_pred CEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047271 57 NKMTFCVAVDPNVIPDPHLLCKDIEESLKVI 87 (104)
Q Consensus 57 g~l~~~v~ad~~~vpD~~~l~~~l~~al~eL 87 (104)
|+++|.++-.....|-.+.|.+.+++++.++
T Consensus 42 ~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l 72 (103)
T 1uwd_A 42 NNVKVLMTMTTPMCPLAGMILSDAEEAIKKI 72 (103)
T ss_dssp CEEEEEECCSSSCCSSHHHHHHHHHHHHHTS
T ss_pred CEEEEEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 7899999988888888888888888887654
No 38
>2l2i_B Krueppel-like factor 1; transcription factor TFIIH, erythroid kruppel-like factor EK activator, protein structure, mutation; NMR {Homo sapiens}
Probab=20.66 E-value=16 Score=19.58 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=8.5
Q ss_pred eEEEeccCCCcc
Q 047271 14 TMAFSNVVGPLE 25 (104)
Q Consensus 14 ~~viSNVPGP~~ 25 (104)
++.+||.|||..
T Consensus 28 DLlLTNF~~~E~ 39 (42)
T 2l2i_B 28 DLLLTNFSGPEP 39 (42)
T ss_dssp CCCSSCSCCC--
T ss_pred hhhhccCCCCCC
Confidence 567899999963
Done!