Query 047275
Match_columns 319
No_of_seqs 123 out of 1952
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9E-35 3.1E-39 272.7 27.4 278 34-317 54-354 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.8E-24 6.2E-29 200.0 18.3 260 32-315 59-330 (451)
3 3o7q_A L-fucose-proton symport 99.9 1.7E-23 5.8E-28 192.9 23.4 250 32-317 58-337 (438)
4 2gfp_A EMRD, multidrug resista 99.9 3.2E-22 1.1E-26 181.0 14.6 245 12-304 18-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.1E-20 3.9E-25 176.8 20.8 136 32-170 51-189 (491)
6 2xut_A Proton/peptide symporte 99.7 3.8E-17 1.3E-21 154.1 15.1 138 32-172 51-193 (524)
7 2cfq_A Lactose permease; trans 99.7 1E-16 3.5E-21 147.3 8.5 248 32-316 40-300 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 4.5E-09 1.5E-13 96.5 13.3 138 32-173 285-429 (451)
9 2cfq_A Lactose permease; trans 98.9 2.8E-09 9.6E-14 97.5 8.5 141 38-182 262-405 (417)
10 4gc0_A D-xylose-proton symport 98.9 1.1E-08 3.6E-13 95.2 11.5 142 39-181 316-467 (491)
11 4aps_A DI-OR tripeptide H+ sym 98.8 2E-08 6.9E-13 93.4 12.5 131 35-169 319-463 (491)
12 3o7q_A L-fucose-proton symport 98.8 2E-08 6.9E-13 91.8 12.0 132 32-170 292-425 (438)
13 2xut_A Proton/peptide symporte 98.2 4.6E-06 1.6E-10 78.1 8.8 103 42-144 342-461 (524)
14 2gfp_A EMRD, multidrug resista 97.8 3.1E-06 1.1E-10 75.6 1.1 126 33-164 233-363 (375)
15 2g9p_A Antimicrobial peptide l 52.8 7 0.00024 18.9 1.4 14 54-67 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=9e-35 Score=272.74 Aligned_cols=278 Identities=24% Similarity=0.426 Sum_probs=218.8
Q ss_pred cchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhh------------------hchhhhHHHHHH
Q 047275 34 SQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGG------------------AAFNVYMLILGR 95 (319)
Q Consensus 34 ~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~------------------~a~~~~~li~~R 95 (319)
+...+++++++++|.++|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999988 578999999999
Q ss_pred HHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcccc-----CCCcchHHHHHhhHHHHHHH
Q 047275 96 VLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKI-----KGGWGWRISLSMAAAPASIL 170 (319)
Q Consensus 96 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~gWr~~f~~~~~~~~~~ 170 (319)
+++|+|.|+..+..+++++|++|+++|++..+..+.+...|.+.+.+.++..... .+.+.||+++.+..++.++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999988777766544322 22367999999999998888
Q ss_pred HHhcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275 171 TLGALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ 250 (319)
Q Consensus 171 ~~~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (319)
.+..+++||||+|+..+++ .+++++.+++..++...+++..+..+.....++ ....... ...++........+++
T Consensus 214 ~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~ 288 (491)
T 4gc0_A 214 LMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK-TGGRLLM---FGVGVIVIGVMLSIFQ 288 (491)
T ss_dssp HHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHH---SCCTHHHHHHHHHHHH
T ss_pred hhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh-hhhHHHH---hcccHHHHHHHHHHHH
Confidence 8888999999999998877 677778777776544333332222211111111 1111111 2234455667777888
Q ss_pred hhhhhhHhHhhhHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275 251 QLTGINVISFYAPVLFRTIKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV 317 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~ 317 (319)
+..+++.+.+|.|.+.+..+....... ..+.+.++..++++++++++.||+|||+.++.+...+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 289 QFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 888999999999999988877655433 556777888999999999999999999988777665543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.8e-24 Score=200.05 Aligned_cols=260 Identities=16% Similarity=0.071 Sum_probs=182.6
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhh----chhhhHHHHHHHHHhhhhhhccc
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGA----AFNVYMLILGRVLLGVGIGFSNQ 107 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~----a~~~~~li~~R~l~Gig~g~~~~ 107 (319)
.++.+.+++.+...++..++++++|+++||+|||++++.+.+++.++.+++++ +++++.++++|+++|++.|...+
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence 35678899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHh-hccccCCCcc-hHHHHHhhHHHHHHH-HHhcccccCChhhH
Q 047275 108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNY-GTQKIKGGWG-WRISLSMAAAPASIL-TLGALILPDTPNSI 184 (319)
Q Consensus 108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~g-Wr~~f~~~~~~~~~~-~~~~~~l~es~~~~ 184 (319)
....+++|++|+++|++..+....+..+|.+++..++. ..+ .++ ||+.|.+.++..++. ++..+++||+|++.
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA----WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH----HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 99999999999999999999998888888766655543 222 256 999998877766553 34456789988753
Q ss_pred HhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhh-hcc-cchhHHHHHHHHHHHHhhhhhhHhHhhh
Q 047275 185 IQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTI-IQR-KYRPQLVMAILIPFFQQLTGINVISFYA 262 (319)
Q Consensus 185 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (319)
..++.++.+. +.+.+. + . +++.+.+.++. .+. .++++.+ ......+......+.+..+.
T Consensus 215 ~~~~~~~~~~-----------~~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 275 (451)
T 1pw4_A 215 GLPPIEEYKN-----------DYPDDY-N---E---KAEQELTAKQIFMQYVLPNKLLW-YIAIANVFVYLLRYGILDWS 275 (451)
T ss_dssp CCCSCTTTCC-----------C--------------------CCTHHHHHHTSSCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhcc-----------cccccc-h---h---hhhcccccccchHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2211110000 000000 0 0 00011122221 111 1223333 33333444444556677788
Q ss_pred HHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHhhHHh
Q 047275 263 PVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKL--GRKVLFLVGGILM 315 (319)
Q Consensus 263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~g~~~~ 315 (319)
|.++++ .+.+... ........++..+++.++.+++.||+ |||+.++.+..++
T Consensus 276 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 276 PTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 888776 5555443 34556667788899999999999999 9998876665443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=1.7e-23 Score=192.94 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=175.9
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHhhhhhhccch
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALG---GAAFNVYMLILGRVLLGVGIGFSNQS 108 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~---~~a~~~~~li~~R~l~Gig~g~~~~~ 108 (319)
.+..+.+++.+...++..+++++.|+++||+|||++++.+.+++.++.++. +.+++++.++++|+++|++.|...+.
T Consensus 58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_dssp CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence 456788999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcc-ccCCC----------------cc------hHHHHHhhHH
Q 047275 109 VPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQ-KIKGG----------------WG------WRISLSMAAA 165 (319)
Q Consensus 109 ~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------~g------Wr~~f~~~~~ 165 (319)
...+++|++|+++|++..+..+.+..+|.+++..+..... ...+. |+ ||+.|.+.+.
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 217 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVA 217 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999888899889998777766554332 22111 11 9999876655
Q ss_pred HHHHHHHh--cccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHH
Q 047275 166 PASILTLG--ALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMA 243 (319)
Q Consensus 166 ~~~~~~~~--~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (319)
...+..+. ....||+++... ++++ +.+ .+++++++++. ++....
T Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~---~~~~-----------~~~-----------------~~~~~~~~~~~---~~~~~~ 263 (438)
T 3o7q_A 218 IVLLVALLIMLTKFPALQSDNH---SDAK-----------QGS-----------------FSASLSRLARI---RHWRWA 263 (438)
T ss_dssp HHHHHHHHHHHCCCCCCTTTCC---CCSS-----------TTS-----------------HHHHHHHHTTC---SHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccc---cccc-----------ccc-----------------hhhhHHHHHhC---hHHHHH
Confidence 54443332 233566653210 0000 000 01112233322 222222
Q ss_pred HHHHHHHhhhhhhHhHhhhHHH-HHhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhhh
Q 047275 244 ILIPFFQQLTGINVISFYAPVL-FRTI-KLSESTSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMFV 317 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~~ 317 (319)
. ...+........+..|.|.+ +++. +.+... ......+..+..+++.++.+++.||+|||+++..+..++.+
T Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 264 V-LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2 22222333345555677777 7665 655443 33555566778889999999999999999988776665543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=3.2e-22 Score=180.96 Aligned_cols=245 Identities=15% Similarity=0.204 Sum_probs=175.3
Q ss_pred hhhhhhcccccCcccccccccCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHH
Q 047275 12 FFPEVYKNMREDTNVSNYCKFNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYML 91 (319)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~l 91 (319)
.+.+.++.+.+|.+ .++.+.+++.+...++..+++++.|+++||+|||+++..+.....++.++.+++++++.+
T Consensus 18 ~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (375)
T 2gfp_A 18 IYIPAIADMARDLN------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVL 91 (375)
T ss_dssp HHHHHHHHHHTTSS------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444444444544 356788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHH
Q 047275 92 ILGRVLLGVGIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILT 171 (319)
Q Consensus 92 i~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~ 171 (319)
++.|+++|++.+...+....++.|++|+++|++..+....+..+|...+..++... .+.++||+.|.+.++..++..
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL---DTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887776665433 234689999988777766655
Q ss_pred H-hcccccCChhhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHH
Q 047275 172 L-GALILPDTPNSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQ 250 (319)
Q Consensus 172 ~-~~~~l~es~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (319)
+ ..+.+||++++.. + + ++.+++++++++ +|+..... ...+.
T Consensus 169 ~~~~~~~~~~~~~~~---~-~------------------------------~~~~~~~~~~~~---~~~~~~~~-~~~~~ 210 (375)
T 2gfp_A 169 FSMARWMPETRPVDA---P-R------------------------------TRLLTSYKTLFG---NSGFNCYL-LMLIG 210 (375)
T ss_dssp CCCCCSSCCCSTTTC---C-C------------------------------CCTTTCSTHHHH---HHHHHHHH-HHHHH
T ss_pred HHHHHHCcccCCCCc---c-c------------------------------ccHHHHHHHHhc---CcchHHHH-HHHHH
Confidence 4 4566788765311 0 0 001112222322 12222222 22233
Q ss_pred hhhhhhHhHhhhHHHHHh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047275 251 QLTGINVISFYAPVLFRT-IKLSESTSLLMSAVVTGGVSTIATITSMILTDKLGR 304 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr 304 (319)
.....+.+..+.|.++++ .+.+... ........++..+++.++.+++.||.||
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 211 GLAGIAAFEACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHCSCSSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666554 4544332 3344555667777888888888888877
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=1.1e-20 Score=176.83 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=114.8
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhh
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRA-LGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVP 110 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~ 110 (319)
.+..+.+++.+...++..+++++.|+++|| +|||+++..+.+++.++.+++++++|++.++++|+++|++.|...+...
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 456888899999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC--CcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHH
Q 047275 111 LYLSEMAPPKH--RGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASIL 170 (319)
Q Consensus 111 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 170 (319)
.+++|++|+++ |+...+..+.+..+|..++..+...+. +.+|||+.|.+.++..++.
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~ 189 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIG 189 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHH
Confidence 99999999998 555666666777777666554443322 2368999998876654443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.73 E-value=3.8e-17 Score=154.11 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=115.5
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHHHHhhhhhhccchh
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL-GRKASILVGGVAFLAGSALGGAAF-NVYMLILGRVLLGVGIGFSNQSV 109 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~~~~~~~~~a~-~~~~li~~R~l~Gig~g~~~~~~ 109 (319)
.++.+.+++.+...++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|+++|++.|...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 4567888999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hHHHHhcCCCCCCcchhhH---HHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHH
Q 047275 110 PLYLSEMAPPKHRGAFNIG---FQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTL 172 (319)
Q Consensus 110 ~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~ 172 (319)
..+++|++|+++|++..+. ...+..+|...+..+...+. +.++||+.|.+.++..++..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999876655 66666666655554433222 236899999887766554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.66 E-value=1e-16 Score=147.29 Aligned_cols=248 Identities=11% Similarity=0.065 Sum_probs=130.1
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHH---Hhhhchhh-hHHHHHHHHHhhhhhhccc
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSA---LGGAAFNV-YMLILGRVLLGVGIGFSNQ 107 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~---~~~~a~~~-~~li~~R~l~Gig~g~~~~ 107 (319)
.++.+.+.+.+...++..++++++|+++||+|||++++.+...+.++.. ...+++.. ..+...|++.|++.|...+
T Consensus 40 ~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 119 (417)
T 2cfq_A 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999988877655321 11222221 1245667777777666555
Q ss_pred hhhHHHHhcCCC--CCCcchhhHH----HHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHHHHHhcccccCCh
Q 047275 108 SVPLYLSEMAPP--KHRGAFNIGF----QVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASILTLGALILPDTP 181 (319)
Q Consensus 108 ~~~~~i~e~~p~--~~Rg~~~~~~----~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~es~ 181 (319)
.....+.++.++ ++|+...+.. .++..+|..++..+ .+ ++||+.|++.+++.++..+..+..+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l---~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM---FT-----INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH---HH-----HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH---HH-----hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 444444444433 3344322222 33333433322222 11 4699999887766544444444555443
Q ss_pred hhHHhccCChHHHHHHHHHHcCChhHHHHHHHHHHHHhhccccccchhhhhcccchhHHHHHHHHHHHHhhhhhhHhHhh
Q 047275 182 NSIIQRSNGHEKAKKMLQRVRGTADVQAELDDLIRASIVSRTVKHPFQTIIQRKYRPQLVMAILIPFFQQLTGINVISFY 261 (319)
Q Consensus 182 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
++.. +.+++++ .+.++ ...+.++++++ .++.+..... .+.....+.....+
T Consensus 192 ~~~~-~~~~~~~--------~~~~~----------------~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (417)
T 2cfq_A 192 PSSA-TVANAVG--------ANHSA----------------FSLKLALELFR---QPKLWFLSLY-VIGVSCTYDVFDQQ 242 (417)
T ss_dssp SCSS-CSSSSSS--------SCCCC----------------CCHHHHHHHTT---CHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cccc-ccccccc--------ccccc----------------ccHHHHHHHhc---CCchhhHHHH-HHHHHHHHHHHHHH
Confidence 2100 0000000 00000 00001122222 1222222222 11111222333344
Q ss_pred hHHHHHhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhhHHhh
Q 047275 262 APVLFRTIKLSE---STSLLMSAVVTGGVSTIATITSMILTDKLGRKVLFLVGGILMF 316 (319)
Q Consensus 262 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~g~~~~~ 316 (319)
.|.++.+..... .........+..+...++.++.++++||+|||+++..+..++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 565554432111 1122333445556677889999999999999998776665543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.98 E-value=4.5e-09 Score=96.47 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=107.4
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhh--chhHHHHHHHHHHH-HHHHHhhhc--hhhhHHHHHHHHHhhhhhhcc
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRAL--GRKASILVGGVAFL-AGSALGGAA--FNVYMLILGRVLLGVGIGFSN 106 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~--GRr~~~~~~~~~~~-~~~~~~~~a--~~~~~li~~R~l~Gig~g~~~ 106 (319)
.+..+.+.+.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchH
Confidence 3456677788888889999999999999999 99999888877766 555555555 477888889999999999999
Q ss_pred chhhHHHHhcCCCCCCcchhhHHHHHHHH-HHHHHHHH-HhhccccCCCcchHHHHHhhHHHHHHHHHh
Q 047275 107 QSVPLYLSEMAPPKHRGAFNIGFQVCTAI-GVLGANLL-NYGTQKIKGGWGWRISLSMAAAPASILTLG 173 (319)
Q Consensus 107 ~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~-~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 173 (319)
+....++.|.+|+++||...+.......+ |..++..+ ++..+ ..||+..|.+.++..++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~----~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD----FFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHH
Confidence 99899999999999999988888877777 76555433 33332 357888887766655554433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.90 E-value=2.8e-09 Score=97.52 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=101.3
Q ss_pred hHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhHHHHhcC
Q 047275 38 TTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPLYLSEMA 117 (319)
Q Consensus 38 ~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~~i~e~~ 117 (319)
+...+...++..++.++.|++.||+|||+.+..+..+..++..+.++.++.+.+++..++.|++.+...+....+++|..
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44455556677888999999999999999999888888887777777788888888888999988877777888999999
Q ss_pred CCCCCcchhhH-HHHHHHHHHHHHH-HHHhhccccCCCcchHHHHHhhHHHHHHHHHh-cccccCChh
Q 047275 118 PPKHRGAFNIG-FQVCTAIGVLGAN-LLNYGTQKIKGGWGWRISLSMAAAPASILTLG-ALILPDTPN 182 (319)
Q Consensus 118 p~~~Rg~~~~~-~~~~~~~G~~~~~-~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~es~~ 182 (319)
|++.||...+. .+....+|...+. +.++..+ .+||+..|.+.++..++..+. ....||.++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----SIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999986555 3444555543333 3333322 256888887766655554333 444565543
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.87 E-value=1.1e-08 Score=95.25 Aligned_cols=142 Identities=14% Similarity=0.057 Sum_probs=83.4
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhc-----hhhhHHH-HHHHHHhhhhhhccchhhHH
Q 047275 39 TFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAA-----FNVYMLI-LGRVLLGVGIGFSNQSVPLY 112 (319)
Q Consensus 39 ~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a-----~~~~~li-~~R~l~Gig~g~~~~~~~~~ 112 (319)
..+....+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...++ +.-+..+.+ .+..+....+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 394 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVL 394 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 34445556778899999999999999999988888777766554332 1222222 222222333 2334566789
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHHHHHH-HHHhhccc--cCCCcchHHHHHhhHHHHHH-HHHhcccccCCh
Q 047275 113 LSEMAPPKHRGAFNIGFQVCTAIGVLGAN-LLNYGTQK--IKGGWGWRISLSMAAAPASI-LTLGALILPDTP 181 (319)
Q Consensus 113 i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~--~~~~~gWr~~f~~~~~~~~~-~~~~~~~l~es~ 181 (319)
.+|.+|.+.|+...++.....-+|..+.. ..+..... .....++.+.|.+.+..+++ ..+.++++||+.
T Consensus 395 ~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 395 LSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 99999999999877666555545433322 22222110 01113344555554544444 334567899983
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.85 E-value=2e-08 Score=93.39 Aligned_cols=131 Identities=11% Similarity=-0.053 Sum_probs=95.5
Q ss_pred chhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHH-----HHHHHHHHHHHHhhhch---------hhhHHHHHHHHHhh
Q 047275 35 QLLTTFTSSPFIAGLIASLFASKVTRALGRKASIL-----VGGVAFLAGSALGGAAF---------NVYMLILGRVLLGV 100 (319)
Q Consensus 35 ~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~-----~~~~~~~~~~~~~~~a~---------~~~~li~~R~l~Gi 100 (319)
...+...+...++..++.++.+++.||+|||+... .+.++..++..+.+... +.+.+++.-++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 398 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL 398 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 34555666677788889999999999999986554 66666666665555432 77788888999999
Q ss_pred hhhhccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhHHHHHH
Q 047275 101 GIGFSNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAAAPASI 169 (319)
Q Consensus 101 g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~ 169 (319)
+.+...+....++.|.+|++.||...+.......+|..++..+.....+ .++...|.+.+...++
T Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 399 GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVV 463 (491)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHH
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888887766655443332 2444555554444343
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.84 E-value=2e-08 Score=91.79 Aligned_cols=132 Identities=8% Similarity=-0.010 Sum_probs=97.7
Q ss_pred cCcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhhhhhhccchhhH
Q 047275 32 FNSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVAFLAGSALGGAAFNVYMLILGRVLLGVGIGFSNQSVPL 111 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~~~~~~~~~a~~~~~li~~R~l~Gig~g~~~~~~~~ 111 (319)
.+..+.+.+.+...+++.++.++.|++.||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 370 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFS 370 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345677788888888999999999999999999999999999998888888888887766655 8999999999999999
Q ss_pred HHHhcCCCCCCcchhhHHHHHHHHHHH-HHHHHHhhccccCCCcc-hHHHHHhhHHHHHHH
Q 047275 112 YLSEMAPPKHRGAFNIGFQVCTAIGVL-GANLLNYGTQKIKGGWG-WRISLSMAAAPASIL 170 (319)
Q Consensus 112 ~i~e~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~ 170 (319)
+..|..|++ |+...+.... ..+|.. ...+.++..+ ..| ++..|.+..+..++.
T Consensus 371 ~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~g~l~~----~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD----AAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHHH-TTHHHHHHHHHHHHHHH----HHTSSGGGGHHHHHHHHHH
T ss_pred HHHhhcccc-ccchhhHHHH-HHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHHH
Confidence 999999976 6665544443 234433 3333333332 245 777777655444333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=4.6e-06 Score=78.06 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhhhhh----hhhchh----HHHHHHHHHHHHHHHHhhhc---------hhhhHHHHHHHHHhhhhhh
Q 047275 42 SSPFIAGLIASLFASKVT----RALGRK----ASILVGGVAFLAGSALGGAA---------FNVYMLILGRVLLGVGIGF 104 (319)
Q Consensus 42 ~~~~~g~~ig~~~~g~l~----dr~GRr----~~~~~~~~~~~~~~~~~~~a---------~~~~~li~~R~l~Gig~g~ 104 (319)
....++..++..+.+++. ||.||| +.+..+.++..++.++.++. .+.+.+++.-++.|++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 421 (524)
T 2xut_A 342 ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVL 421 (524)
T ss_dssp TTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHH
Confidence 333445556666666654 555443 45666777777776666553 3677888899999999999
Q ss_pred ccchhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 047275 105 SNQSVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLN 144 (319)
Q Consensus 105 ~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~ 144 (319)
..+....++.|.+|+++||...+.......+|..++..+.
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888866655443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.85 E-value=3.1e-06 Score=75.59 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=85.1
Q ss_pred CcchhhHHhHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH-HHHHHHHhhh----chhhhHHHHHHHHHhhhhhhccc
Q 047275 33 NSQLLTTFTSSPFIAGLIASLFASKVTRALGRKASILVGGVA-FLAGSALGGA----AFNVYMLILGRVLLGVGIGFSNQ 107 (319)
Q Consensus 33 ~~~~~~~~~~~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~-~~~~~~~~~~----a~~~~~li~~R~l~Gig~g~~~~ 107 (319)
++.+.+.+.+...++..++.++.+++.||+||+ +..+... ...+..+... .++.+.+++.-++.|++.+...+
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 310 (375)
T 2gfp_A 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFP 310 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhH
Confidence 345666777777888899999999999999983 2333332 2222221111 23777788899999999999999
Q ss_pred hhhHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHHhhH
Q 047275 108 SVPLYLSEMAPPKHRGAFNIGFQVCTAIGVLGANLLNYGTQKIKGGWGWRISLSMAA 164 (319)
Q Consensus 108 ~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gWr~~f~~~~ 164 (319)
....++.|..| ++||+..+.......+|...+..+. +.+.+..+|+..+.+..
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~---g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS---AMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccHHHHHHH
Confidence 99999999998 8899888887776666654433221 11112245666665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=52.77 E-value=7 Score=18.93 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.1
Q ss_pred hhhhhhhhhchhHH
Q 047275 54 FASKVTRALGRKAS 67 (319)
Q Consensus 54 ~~g~l~dr~GRr~~ 67 (319)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999853
Done!