Query 047278
Match_columns 252
No_of_seqs 245 out of 1736
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3E-55 6.4E-60 376.1 24.8 249 1-249 27-275 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.3E-49 4.9E-54 350.1 28.0 242 4-249 60-301 (308)
3 PRK12895 ubiA prenyltransferas 100.0 7.2E-42 1.6E-46 298.5 25.0 230 3-249 43-282 (286)
4 PRK12888 ubiA prenyltransferas 100.0 2.3E-40 5E-45 289.8 25.0 230 2-249 44-283 (284)
5 PLN02809 4-hydroxybenzoate non 100.0 8.9E-40 1.9E-44 286.5 25.5 228 3-249 51-288 (289)
6 PRK13106 ubiA prenyltransferas 100.0 4E-39 8.7E-44 283.4 24.9 231 2-250 54-298 (300)
7 PRK12876 ubiA prenyltransferas 100.0 1E-38 2.2E-43 279.0 26.8 220 3-238 53-280 (300)
8 PRK12873 ubiA prenyltransferas 100.0 2.5E-38 5.5E-43 276.5 24.4 229 2-247 49-292 (294)
9 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.9E-38 4.1E-43 278.7 23.3 228 2-248 51-289 (290)
10 PRK12874 ubiA prenyltransferas 100.0 6E-38 1.3E-42 275.5 26.3 231 2-250 52-291 (291)
11 TIGR01475 ubiA_other putative 100.0 2.2E-37 4.7E-42 271.5 25.4 231 2-248 41-281 (282)
12 PRK12848 ubiA 4-hydroxybenzoat 100.0 3.7E-37 8.1E-42 269.9 24.9 227 2-247 47-282 (282)
13 TIGR01474 ubiA_proteo 4-hydrox 100.0 7.9E-37 1.7E-41 267.7 25.5 227 2-247 45-280 (281)
14 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.9E-36 6.2E-41 264.8 25.3 218 2-238 50-269 (285)
15 PRK12878 ubiA 4-hydroxybenzoat 100.0 2.6E-36 5.6E-41 267.6 25.1 228 2-248 77-313 (314)
16 PRK12886 ubiA prenyltransferas 100.0 3.4E-36 7.3E-41 264.5 25.5 229 2-248 47-285 (291)
17 COG0382 UbiA 4-hydroxybenzoate 100.0 4.5E-36 9.8E-41 264.0 24.0 217 3-238 53-272 (289)
18 KOG1381 Para-hydroxybenzoate-p 100.0 6.5E-38 1.4E-42 262.9 10.7 227 4-250 110-347 (353)
19 PRK12882 ubiA prenyltransferas 100.0 7.7E-35 1.7E-39 254.7 24.9 226 2-243 43-269 (276)
20 PRK12884 ubiA prenyltransferas 100.0 6.3E-34 1.4E-38 249.3 25.1 219 2-238 42-261 (279)
21 PRK09573 (S)-2,3-di-O-geranylg 100.0 6.5E-34 1.4E-38 249.2 25.1 223 2-243 42-266 (279)
22 PRK12392 bacteriochlorophyll c 100.0 4.6E-34 9.9E-39 254.3 23.4 212 10-236 63-281 (331)
23 PRK07566 bacteriochlorophyll/c 100.0 1.5E-33 3.2E-38 250.4 24.2 178 4-190 72-249 (314)
24 PRK04375 protoheme IX farnesyl 100.0 2.7E-33 5.8E-38 247.0 24.0 234 2-250 49-292 (296)
25 TIGR01476 chlor_syn_BchG bacte 100.0 6.1E-33 1.3E-37 243.5 24.5 188 3-201 44-232 (283)
26 PRK12869 ubiA protoheme IX far 100.0 2.4E-32 5.1E-37 239.1 24.6 223 3-241 42-268 (279)
27 TIGR01473 cyoE_ctaB protoheme 100.0 2.8E-32 6E-37 239.0 23.6 221 2-238 40-265 (280)
28 PLN00012 chlorophyll synthetas 100.0 6.4E-32 1.4E-36 243.7 24.9 228 3-246 129-370 (375)
29 TIGR02056 ChlG chlorophyll syn 100.0 1.7E-31 3.7E-36 236.4 24.8 178 3-191 60-244 (306)
30 PRK05951 ubiA prenyltransferas 100.0 1.8E-30 3.9E-35 229.0 26.5 225 2-238 45-278 (296)
31 PRK13595 ubiA prenyltransferas 100.0 1.3E-30 2.9E-35 226.5 21.9 173 3-190 53-229 (292)
32 PRK12883 ubiA prenyltransferas 100.0 9.2E-30 2E-34 222.8 24.6 209 3-231 43-251 (277)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 1.6E-29 3.4E-34 222.9 25.2 191 2-204 43-242 (293)
34 PRK13362 protoheme IX farnesyl 100.0 2.5E-29 5.5E-34 222.1 24.2 166 2-180 52-220 (306)
35 PRK12871 ubiA prenyltransferas 100.0 3.2E-29 7E-34 220.5 22.9 215 4-238 48-279 (297)
36 PF01040 UbiA: UbiA prenyltran 100.0 5.1E-29 1.1E-33 214.7 20.0 218 3-238 29-248 (257)
37 PRK12872 ubiA prenyltransferas 100.0 5.2E-29 1.1E-33 218.8 20.1 191 2-203 41-234 (285)
38 PRK13387 1,4-dihydroxy-2-napht 100.0 1.2E-27 2.6E-32 212.5 23.4 190 2-203 44-262 (317)
39 TIGR00751 menA 1,4-dihydroxy-2 100.0 5.7E-27 1.2E-31 205.1 26.4 190 2-202 33-236 (284)
40 PRK13591 ubiA prenyltransferas 100.0 1.3E-27 2.8E-32 208.7 21.7 183 2-200 63-249 (307)
41 PLN02776 prenyltransferase 100.0 8.1E-27 1.7E-31 207.1 23.5 218 2-237 34-257 (341)
42 PRK13105 ubiA prenyltransferas 100.0 2.8E-26 6.1E-31 199.9 25.1 179 3-194 36-224 (282)
43 TIGR02235 menA_cyano-plnt 1,4- 99.9 3.3E-25 7.2E-30 194.1 23.9 187 2-203 40-234 (285)
44 PRK13592 ubiA prenyltransferas 99.9 1.7E-25 3.6E-30 193.9 21.4 171 5-189 54-232 (299)
45 PRK07419 1,4-dihydroxy-2-napht 99.9 1.2E-24 2.5E-29 192.0 24.6 189 2-203 53-247 (304)
46 PLN02922 prenyltransferase 99.9 3.6E-24 7.7E-29 189.8 27.0 194 2-202 56-260 (315)
47 PRK12875 ubiA prenyltransferas 99.9 8.3E-24 1.8E-28 184.8 21.8 169 9-194 57-229 (282)
48 COG1575 MenA 1,4-dihydroxy-2-n 99.9 1.9E-22 4.2E-27 174.7 24.0 190 2-203 49-249 (303)
49 COG0109 CyoE Polyprenyltransfe 99.9 6.6E-23 1.4E-27 177.2 15.6 222 2-238 57-281 (304)
50 PRK12324 phosphoribose diphosp 99.8 6.5E-17 1.4E-21 142.0 21.3 98 3-106 52-151 (295)
51 PRK08238 hypothetical protein; 99.7 2.5E-16 5.3E-21 147.1 21.5 144 3-163 232-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.2 4.4E-11 9.6E-16 103.8 5.9 169 3-187 133-309 (409)
53 KOG4581 Predicted membrane pro 98.8 1.6E-09 3.5E-14 90.2 0.5 182 7-200 109-299 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 95.0 0.081 1.8E-06 46.7 6.7 30 5-34 184-213 (303)
55 PRK13591 ubiA prenyltransferas 93.6 0.32 6.8E-06 43.3 7.5 69 15-83 197-271 (307)
56 PRK12872 ubiA prenyltransferas 92.6 0.64 1.4E-05 40.7 8.0 32 7-38 171-203 (285)
57 PRK12875 ubiA prenyltransferas 92.5 2 4.3E-05 37.8 11.0 51 4-57 172-223 (282)
58 PRK07419 1,4-dihydroxy-2-napht 91.8 0.91 2E-05 40.4 8.1 23 8-30 185-207 (304)
59 PRK13387 1,4-dihydroxy-2-napht 91.5 0.81 1.8E-05 41.0 7.5 38 7-47 199-237 (317)
60 PLN02922 prenyltransferase 90.7 1 2.3E-05 40.2 7.4 25 7-31 198-222 (315)
61 TIGR01474 ubiA_proteo 4-hydrox 90.5 1.7 3.7E-05 38.1 8.5 35 6-40 169-204 (281)
62 PRK13592 ubiA prenyltransferas 90.4 2.7 5.9E-05 37.2 9.5 43 139-182 55-100 (299)
63 COG0382 UbiA 4-hydroxybenzoate 90.0 4 8.8E-05 35.8 10.4 34 139-172 56-90 (289)
64 PLN00012 chlorophyll synthetas 89.9 1.8 4E-05 39.6 8.4 31 8-38 263-294 (375)
65 PRK13105 ubiA prenyltransferas 89.8 1.9 4.1E-05 38.0 8.2 53 8-63 171-224 (282)
66 PRK12884 ubiA prenyltransferas 89.6 2 4.2E-05 37.5 8.1 33 139-172 46-78 (279)
67 PRK12847 ubiA 4-hydroxybenzoat 89.6 2 4.4E-05 37.6 8.3 34 6-39 174-208 (285)
68 TIGR01475 ubiA_other putative 89.3 1.5 3.3E-05 38.4 7.2 32 7-38 168-200 (282)
69 PRK13106 ubiA prenyltransferas 89.3 1.8 3.8E-05 38.5 7.6 36 7-42 187-223 (300)
70 TIGR02235 menA_cyano-plnt 1,4- 88.8 2.2 4.9E-05 37.5 7.9 37 8-47 172-209 (285)
71 PRK07566 bacteriochlorophyll/c 88.5 2.4 5.2E-05 37.8 7.9 29 10-38 202-231 (314)
72 PRK06080 1,4-dihydroxy-2-napht 88.3 2.4 5.3E-05 37.2 7.9 32 6-37 177-209 (293)
73 PRK12392 bacteriochlorophyll c 87.9 2.8 6E-05 37.8 8.0 34 5-38 188-222 (331)
74 TIGR02056 ChlG chlorophyll syn 87.8 3.3 7.1E-05 36.8 8.4 31 8-38 194-225 (306)
75 TIGR01476 chlor_syn_BchG bacte 87.4 3.3 7.1E-05 36.2 8.0 30 9-38 173-203 (283)
76 PRK12871 ubiA prenyltransferas 87.3 2.8 6.2E-05 37.1 7.6 33 7-39 185-218 (297)
77 PRK12883 ubiA prenyltransferas 87.2 2.8 6.1E-05 36.5 7.5 32 7-38 164-196 (277)
78 PF01040 UbiA: UbiA prenyltran 86.8 5.9 0.00013 33.5 9.2 33 141-173 34-67 (257)
79 PRK12848 ubiA 4-hydroxybenzoat 86.7 5.1 0.00011 35.1 8.9 33 7-39 172-205 (282)
80 PRK12324 phosphoribose diphosp 85.8 3.6 7.8E-05 36.5 7.5 41 142-182 58-102 (295)
81 PRK09573 (S)-2,3-di-O-geranylg 85.8 6.3 0.00014 34.4 9.0 42 139-181 46-90 (279)
82 PRK12887 ubiA tocopherol phyty 85.6 11 0.00025 33.5 10.6 24 148-172 71-94 (308)
83 PRK12888 ubiA prenyltransferas 85.2 6.8 0.00015 34.5 8.9 32 7-38 169-201 (284)
84 PRK12882 ubiA prenyltransferas 84.8 3.9 8.4E-05 35.6 7.2 30 9-38 169-199 (276)
85 PLN02809 4-hydroxybenzoate non 84.7 12 0.00027 32.9 10.3 33 140-172 55-88 (289)
86 PRK12870 ubiA 4-hydroxybenzoat 84.6 6.1 0.00013 34.8 8.3 38 5-42 174-212 (290)
87 TIGR00751 menA 1,4-dihydroxy-2 84.5 4.6 0.0001 35.5 7.5 37 8-47 175-212 (284)
88 PRK12886 ubiA prenyltransferas 82.5 9.9 0.00022 33.5 8.8 30 10-39 175-205 (291)
89 PRK13595 ubiA prenyltransferas 79.6 16 0.00035 32.3 9.0 23 142-164 59-81 (292)
90 PRK05951 ubiA prenyltransferas 78.7 9.3 0.0002 33.7 7.4 35 8-45 182-217 (296)
91 PRK12878 ubiA 4-hydroxybenzoat 78.2 15 0.00033 32.7 8.6 34 6-39 201-235 (314)
92 PRK12874 ubiA prenyltransferas 77.7 14 0.0003 32.6 8.1 33 6-38 176-209 (291)
93 PRK08238 hypothetical protein; 72.9 16 0.00036 34.6 7.8 43 141-183 237-283 (479)
94 PRK12869 ubiA protoheme IX far 70.7 21 0.00045 31.2 7.4 40 140-179 46-89 (279)
95 TIGR01473 cyoE_ctaB protoheme 70.1 21 0.00046 31.0 7.4 41 140-180 45-89 (280)
96 PRK12895 ubiA prenyltransferas 65.6 40 0.00088 29.7 8.2 34 6-39 168-202 (286)
97 PRK04375 protoheme IX farnesyl 63.2 87 0.0019 27.5 9.9 39 141-179 55-97 (296)
98 PLN02878 homogentisate phytylt 61.7 30 0.00064 30.5 6.5 30 8-37 167-197 (280)
99 COG1295 Rbn Ribonuclease BN fa 60.3 1.2E+02 0.0026 26.8 10.4 27 75-102 202-230 (303)
100 PRK13362 protoheme IX farnesyl 59.4 42 0.00091 29.8 7.3 41 140-180 57-101 (306)
101 PRK12876 ubiA prenyltransferas 59.2 42 0.00091 29.9 7.1 31 142-172 59-90 (300)
102 PRK12873 ubiA prenyltransferas 58.4 76 0.0016 28.1 8.6 24 15-38 188-212 (294)
103 PRK04214 rbn ribonuclease BN/u 58.1 90 0.0019 28.9 9.5 16 8-23 116-131 (412)
104 cd00867 Trans_IPPS Trans-Isopr 54.1 13 0.00028 31.1 3.0 34 141-174 157-200 (236)
105 PLN02776 prenyltransferase 51.3 50 0.0011 29.9 6.4 25 139-163 38-62 (341)
106 COG4147 DhlC Predicted symport 50.6 20 0.00043 34.0 3.8 51 4-61 360-410 (529)
107 PRK10581 geranyltranstransfera 46.5 25 0.00053 31.2 3.6 44 139-182 212-266 (299)
108 PF10507 DUF2453: Protein of u 43.0 70 0.0015 24.1 5.0 64 4-67 35-106 (111)
109 PLN02953 phosphatidate cytidyl 34.9 91 0.002 28.9 5.4 48 22-70 77-126 (403)
110 PF11990 DUF3487: Protein of u 33.9 2E+02 0.0044 21.9 6.5 34 24-59 8-41 (121)
111 TIGR03750 conj_TIGR03750 conju 33.7 1.9E+02 0.0042 21.7 6.1 35 24-60 5-39 (111)
112 cd00685 Trans_IPPS_HT Trans-Is 29.3 3.6E+02 0.0077 22.9 13.4 33 140-172 179-222 (259)
113 PF04284 DUF441: Protein of un 28.5 2.9E+02 0.0063 21.7 7.7 15 32-46 59-73 (140)
114 COG0142 IspA Geranylgeranyl py 27.8 32 0.00069 30.8 1.3 34 142-175 206-250 (322)
115 TIGR02749 prenyl_cyano solanes 26.5 63 0.0014 28.9 2.9 35 139-173 203-248 (322)
116 PRK11383 hypothetical protein; 25.6 3.4E+02 0.0073 21.4 10.3 16 144-159 117-132 (145)
117 TIGR02762 TraL_TIGR type IV co 25.5 2.2E+02 0.0048 20.5 5.2 31 25-59 7-37 (95)
118 PF03631 Virul_fac_BrkB: Virul 25.5 4.1E+02 0.0089 22.4 8.8 18 5-22 84-101 (260)
119 CHL00151 preA prenyl transfera 24.9 54 0.0012 29.3 2.2 34 140-173 205-249 (323)
120 PF00348 polyprenyl_synt: Poly 24.6 46 0.001 28.6 1.7 39 138-176 174-223 (260)
121 TIGR02748 GerC3_HepT heptapren 23.8 5.2E+02 0.011 22.9 13.5 34 140-173 200-244 (319)
122 PRK10299 PhoPQ regulatory prot 22.1 93 0.002 19.5 2.2 20 8-27 16-35 (47)
123 PF04971 Lysis_S: Lysis protei 20.6 88 0.0019 21.3 2.0 27 3-29 38-64 (68)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3e-55 Score=376.14 Aligned_cols=249 Identities=57% Similarity=0.932 Sum_probs=226.3
Q ss_pred CccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 1 QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 1 ~~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
|++++++++|.+..++||++|+|+||+|||+||+|||++|+++++.....+.++|+.+++..|++++..+...++++++.
T Consensus 27 ~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~~~lg~~ 106 (280)
T PLN02878 27 EALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTA 106 (280)
T ss_pred HHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999988787776777788999
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK 160 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~ 160 (252)
||...||+|+||.++....+....++..+++|++.+.+++++|++...+.+.++..+++++++.+++++||+||+||||+
T Consensus 107 YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~ 186 (280)
T PLN02878 107 YSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRI 186 (280)
T ss_pred HHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHH
Confidence 99777999999999998888777777778899999888888886544455666666677788899999999999999999
Q ss_pred cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHH
Q 047278 161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240 (252)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~ 240 (252)
.|+||+|+++|+|++.+++..++.++|+..+..|..+...+...++..||.+++..+++|.+.+|.+++++-.+||||||
T Consensus 187 ~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiw 266 (280)
T PLN02878 187 FGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266 (280)
T ss_pred CCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999998888998888777767778999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 047278 241 KTQLVSLKW 249 (252)
Q Consensus 241 ~~~~~~y~~ 249 (252)
|+||+||+.
T Consensus 267 klfy~ey~l 275 (280)
T PLN02878 267 KLFYAEYFL 275 (280)
T ss_pred HHHHHHHHH
Confidence 999999975
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.3e-49 Score=350.11 Aligned_cols=242 Identities=36% Similarity=0.641 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSI 83 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~ 83 (252)
+++..++.+++++||++|+|+|++|||+||++||++|+++++....++.++++.+++..|++.+.++ .++.++++.||
T Consensus 60 ~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys- 137 (308)
T PRK12887 60 IACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS- 137 (308)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc-
Confidence 3444445555559999999999999999999999999999999999999999999998887666655 57778899999
Q ss_pred CccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCc
Q 047278 84 QLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDI 163 (252)
Q Consensus 84 ~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~ 163 (252)
.||+|+||+|+.++++++..+|.++.+|.+.+.... .+.+...+...++..++.++|+.+++++||++|+|+||+.|+
T Consensus 138 -~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 138 -LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred -CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCC
Confidence 799999999999999988888877777776543222 222223456666777778899999999999999999999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Q 047278 164 QTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQ 243 (252)
Q Consensus 164 ~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~~~~ 243 (252)
||+|+++|+|++.+++..++.++|+..+..+.....++...+...||.+.+.+++||.+++|.+|+++-++|||||||+|
T Consensus 216 ~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~ 295 (308)
T PRK12887 216 TTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLF 295 (308)
T ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877776666545556899999999999999999999999999999999999
Q ss_pred HHhhcc
Q 047278 244 LVSLKW 249 (252)
Q Consensus 244 ~~~y~~ 249 (252)
|+||+.
T Consensus 296 ~~ey~~ 301 (308)
T PRK12887 296 FLEYLL 301 (308)
T ss_pred HHHHHH
Confidence 999975
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.2e-42 Score=298.48 Aligned_cols=230 Identities=14% Similarity=0.152 Sum_probs=187.9
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++++++++++|++||+.|+|+|++|+ |+||+|+|++|++||+.+..++.++++.++..+|+.++.++ ..+..+...
T Consensus 43 ~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~ 121 (286)
T PRK12895 43 LIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFII 121 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 567889999999999999999999996 89999999999999999999999999998888898887766 345556677
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK 160 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~ 160 (252)
||+ +||+++++|+++|...|..+..|+. ++.|. .+.....+++.+...+|+.++|++|++||+|+|+|
T Consensus 122 yp~------~KR~t~~~~~~lG~~~g~~~l~g~~-----Av~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~ 189 (286)
T PRK12895 122 DPF------LKRYTAWRHIYMGSIIGLGVLAGYL-----AVIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKI 189 (286)
T ss_pred HHH------HHhCccccHHHHHHHHHhHHHHHHH-----HHcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 775 7999999999998877755555543 33332 11122334556677899999999999999999999
Q ss_pred cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHH-HHHHHH-
Q 047278 161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAST-LSFYMF- 238 (252)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~-~~f~~~- 238 (252)
.|+||+|+++|++++.++...++.++..+....|+... ++.| ..|..+.+.++.|||+++|++|+++| .+||+.
T Consensus 190 ~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y---~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N 265 (286)
T PRK12895 190 NGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWY---LAALIIIYTLVIYQHLIIDPRNPINKRMSFFNAN 265 (286)
T ss_pred cCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 99999999999999988887888888888778887765 5544 34677788999999999999999999 778874
Q ss_pred ------HHHHHHHhhcc
Q 047278 239 ------IWKTQLVSLKW 249 (252)
Q Consensus 239 ------~~~~~~~~y~~ 249 (252)
++.++..++.+
T Consensus 266 ~~ig~~~~~~~~~~~~~ 282 (286)
T PRK12895 266 SFIGFVFLIGIILSLRF 282 (286)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 66666667654
No 4
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.3e-40 Score=289.84 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=190.7
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
.+++++++|+++|++||++|+|+|++|+ |+||+|+|++|++|++.++..+.++++.++..+|+.+..++ ..+++...
T Consensus 44 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~ 122 (284)
T PRK12888 44 VTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLV 122 (284)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3578999999999999999999999998 89999999999999999988888888888887887777666 34555667
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||+ .||+++++|+++++.++..+..|+. +..|. .++..+++.+..++|+.++|++|++||+|+|+
T Consensus 123 ~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~ 188 (284)
T PRK12888 123 VYPY------AKRFTNFPHAILGLAQAVGPVGAWI-----AVTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDR 188 (284)
T ss_pred HHHH------hhcccchhhHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8986 6999999999998876655444543 23332 45566666777889999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHH-HHHHH
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTL-SFYMF 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~-~f~~~ 238 (252)
+.|+||+|+++|+|++.++...++.+++++....+...++++.|.. +..+.+.++.|||+.+|++|+++|. .||+.
T Consensus 189 ~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 265 (284)
T PRK12888 189 RIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWI---GLAITAGAFAYEHAIVSPTDLSRVNRAFFTA 265 (284)
T ss_pred HCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 9999999999999999988887888888888888888888887643 5567778999999999999999997 66632
Q ss_pred -------HHHHHHHhhcc
Q 047278 239 -------IWKTQLVSLKW 249 (252)
Q Consensus 239 -------~~~~~~~~y~~ 249 (252)
++.++++|+++
T Consensus 266 n~~ig~~~~~~~~~~~~~ 283 (284)
T PRK12888 266 NGFVGIALFGFALLDLLV 283 (284)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 77788888765
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=8.9e-40 Score=286.45 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=186.2
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++++++++++|++||++|||+|++|+ |+||+|+|++|++|++.+..++.++++.+.+.+|+.+..++ ..+++....
T Consensus 51 ~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~ 129 (289)
T PLN02809 51 GCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFT 129 (289)
T ss_pred HHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 578899999999999999999999986 79999999999999999999999999999988887777766 455667789
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLV-FATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
||. +||+++++|++.++..+..+.+||. ++.|. .++... .++....+|+.++|+++++||+|||+
T Consensus 130 Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~ 195 (289)
T PLN02809 130 YPL------MKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDL 195 (289)
T ss_pred HhH------HHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Confidence 995 7999999999988776655445542 33442 232333 25566778999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
|.|+||+|+++|+++..+++ .++.+++..+..+|+..++++.|.. ++.+.+.++.+|++.+|++|+++|.+.|+.
T Consensus 196 ~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n 271 (289)
T PLN02809 196 KVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWPYYA---GLAAAAGHLAWQIQTVDLSSRADCNRKFVSN 271 (289)
T ss_pred hCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 99999999999999666665 4677778888888888888876533 677777899999999999999999999874
Q ss_pred ------HHHHHHHhhcc
Q 047278 239 ------IWKTQLVSLKW 249 (252)
Q Consensus 239 ------~~~~~~~~y~~ 249 (252)
++.++.+++.+
T Consensus 272 ~~~g~~~~~~~~~~~~~ 288 (289)
T PLN02809 272 KWFGAIVFAGIVLGKLF 288 (289)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 66666666553
No 6
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-39 Score=283.36 Aligned_cols=231 Identities=14% Similarity=0.146 Sum_probs=186.2
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++++++++++|++||++|+|+|++|+ |+||+|+|++|++|++.+..++.+.++.++...|+.+..++ ..+.+...
T Consensus 54 ~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~-~~~~~~~~ 132 (300)
T PRK13106 54 IFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLS-PIVALIAM 132 (300)
T ss_pred HHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3578899999999999999999999996 89999999999999999987777777777777787777766 34445567
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchHHHHHHHHHHHHHHHHHHhhcCCC
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPV-----VITKPLVFATAFMCVLSFANGLLKDVPD 154 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~D 154 (252)
.||+ +||+++++|+++++..|..+..|+.. +.|... ..+...+++.+..++|+.++|++|++||
T Consensus 133 ~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D 201 (300)
T PRK13106 133 SYPY------MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPD 201 (300)
T ss_pred HHhH------HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 8985 79999999999988877554455532 223110 1122334445567789999999999999
Q ss_pred chhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH
Q 047278 155 VDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS 234 (252)
Q Consensus 155 ~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~ 234 (252)
+|+|+|.|+||+|+++| +++++++..++.++.++....++..++++.|+. +..+...++.+|+..++.+ ++|.+
T Consensus 202 ~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~---~~~~~~~~l~~~~~~~~~~--~~~~~ 275 (300)
T PRK13106 202 AEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIA---ATILHGLIMAYAYYLASKK--GDFGR 275 (300)
T ss_pred hhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCCc--hHHHH
Confidence 99999999999999999 778999998999999888889999888887643 5556678899999999988 88988
Q ss_pred HHHH-------HHHHHHHhhccc
Q 047278 235 FYMF-------IWKTQLVSLKWK 250 (252)
Q Consensus 235 f~~~-------~~~~~~~~y~~~ 250 (252)
.|+. ++.++.+||+++
T Consensus 276 ~F~~n~~ig~~~~~~~~~~~~~~ 298 (300)
T PRK13106 276 AFYYNIYSSIVLGLGIIIDVLLG 298 (300)
T ss_pred HHHHccHHHHHHHHHHHHHHHHc
Confidence 8864 777888888654
No 7
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1e-38 Score=278.97 Aligned_cols=220 Identities=17% Similarity=0.167 Sum_probs=173.3
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++++.+|+++|++||+.|||+|++|+ |+||+|+|++|++||+.+..++.++++.++..+|+.+..++ ..++++...
T Consensus 53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~~~~~~~i 131 (300)
T PRK12876 53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VLSTLLMII 131 (300)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 478999999999999999999999999 79999999999999999998888888888888898888877 455566689
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHHHHHHhhcCCCch
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITK----PLVFATAFMCVLSFANGLLKDVPDVD 156 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~D~~ 156 (252)
||+ +||+++++|++++++.+..+..++. ++.+++ .++ ..++..+...+|+.++|++|++||+|
T Consensus 132 Y~~------~KR~t~~~~~vLGl~~~~~~l~~~~-----Av~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e 198 (300)
T PRK12876 132 YPY------TKRVTFLCHWILGLVYYLAILMNFF-----AIIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLE 198 (300)
T ss_pred HHh------HhcCCchhHHHHHHHHHHHHHHHHH-----HHhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHh
Confidence 996 7999999999998776654444443 333321 222 12233344566778999999999999
Q ss_pred hhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH--HHHHHhhhcccCchHHHHH
Q 047278 157 GDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAF--ILWLRAKTVDLSSNASTLS 234 (252)
Q Consensus 157 ~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~--~l~~~~~~~d~~~~~~~~~ 234 (252)
+|++.|+||+|+++|++++.++...++.++...+...|...++++.+.+ .+..+.+. ++.+|.+.+|.++++.|.+
T Consensus 199 ~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (300)
T PRK12876 199 FDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYL--CSLVPLTVILKTIKHYSLIDKKKSTLEQK 276 (300)
T ss_pred hHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 9999999999999999988888888888888888888988888865322 23322223 3455558888889999999
Q ss_pred HHHH
Q 047278 235 FYMF 238 (252)
Q Consensus 235 f~~~ 238 (252)
||+.
T Consensus 277 ~F~~ 280 (300)
T PRK12876 277 FFLG 280 (300)
T ss_pred HHHh
Confidence 9986
No 8
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.5e-38 Score=276.54 Aligned_cols=229 Identities=14% Similarity=0.067 Sum_probs=184.2
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMF----RSPPLLLALIIWF 75 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~ 75 (252)
+++++.++++++|++||+.|+|+|++|+ ++||+|+|++|++||+.+..++..+++.+++.+ |+.+..++ ..++
T Consensus 49 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~ 127 (294)
T PRK12873 49 IILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLAL 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHH
Confidence 4678999999999999999999999988 799999999999999999999999998888766 34455555 4555
Q ss_pred HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278 76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV 155 (252)
Q Consensus 76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~ 155 (252)
+....||. +||++.++|+++++..+.++.+||. ++.|. .+.....+++++..++|+.++|++|++||+
T Consensus 128 ~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~-----Av~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ 195 (294)
T PRK12873 128 PPILIYPS------AKRWFAYPQAILALCWGFAVLIPWA-----AAEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADR 195 (294)
T ss_pred HHHHHHHH------HHhccccchHHHHHHHHhHHHHHHH-----HHhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56789996 7999999999998887766556653 34442 111223344446678999999999999999
Q ss_pred hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCc--hHHHH
Q 047278 156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSS--NASTL 233 (252)
Q Consensus 156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~--~~~~~ 233 (252)
|||+++|+||+|+++|++ +......++.++..++..+|...++++.|.. +..+.+.++.+||+.+|++| +++|.
T Consensus 196 edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~c~ 271 (294)
T PRK12873 196 RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGFIFWP---FWLIASIGMQRDILKLFPEKQSIKTIG 271 (294)
T ss_pred hhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 999999999999999975 6666677888888888999999999887643 55666788999999999998 59999
Q ss_pred HHHHH-------HHHHHHHhh
Q 047278 234 SFYMF-------IWKTQLVSL 247 (252)
Q Consensus 234 ~f~~~-------~~~~~~~~y 247 (252)
+.|.. ++.++.+++
T Consensus 272 ~~F~~n~~~G~~i~~g~~~~~ 292 (294)
T PRK12873 272 NHFSNQVILGSLLLLGLILAR 292 (294)
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 98875 555555543
No 9
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-38 Score=278.75 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=184.8
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++++++++++|++||++|+|+|++|+ ++||+|+|++|++|+..++.++.++++.+++.+|+.+..++ ..+.+...
T Consensus 51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 129 (290)
T PRK12870 51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIF 129 (290)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3678899999999999999999998766 58999999999999999999999999999988887777766 45556678
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. .||++.++|+++++.+|..+..|+. +..|. .++..+++.+..++|+.++|++|++||+|+|+
T Consensus 130 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----a~~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~ 195 (290)
T PRK12870 130 LYPL------AKRVFPVPQLVLAIAWGFAVLISWS-----AVTGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDL 195 (290)
T ss_pred Hhhh------hhhccccceeeehHHHHhHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 9995 6999999999988877765445543 23332 34555566667789999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHH
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTV--DLSSNASTLSFYM 237 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~--d~~~~~~~~~f~~ 237 (252)
++|+||+|+++|++++.+++. ++.++...+...++..++++.|.. +..+...++.+|+..+ |.+|+++|.++|+
T Consensus 196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~ 271 (290)
T PRK12870 196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHLPFWI---GLAIAAVLWARQYRRLRQANLPPLAYGQLFL 271 (290)
T ss_pred HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 999999999999998887766 466666666778888888876643 4556667899999988 8889999999998
Q ss_pred H-------HHHHHHHhhc
Q 047278 238 F-------IWKTQLVSLK 248 (252)
Q Consensus 238 ~-------~~~~~~~~y~ 248 (252)
. ++.++.++++
T Consensus 272 ~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 272 QNVWIGFLLLAGMILGSL 289 (290)
T ss_pred HhhHHHHHHHHHHHHHhh
Confidence 5 5666666554
No 10
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6e-38 Score=275.47 Aligned_cols=231 Identities=18% Similarity=0.221 Sum_probs=186.3
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
.+++++++++++|++||++|+|+|++|+ |+||+|+|++|++|++.++.++.++++.+++..|+.+..++ +..+....
T Consensus 52 ~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~ 130 (291)
T PRK12874 52 GILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLG 130 (291)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3578889999999999999999999998 89999999999999999998888888888888887777666 45555678
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||+ +||++.++|+++++.+|.++.+|+. ++.|. .+.+.+++.+..++|+.++|++|++||+|+|+
T Consensus 131 ~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~-----av~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~ 196 (291)
T PRK12874 131 GYSY------FKRFSSLAHLVLGLSLGLAPIAGVV-----AVLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDK 196 (291)
T ss_pred HHhh------hcccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9996 7999999999998888766666653 33332 34445555666789999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
++|+||+|+++|++++.++.........+.....+.....++.++ .+..+.+..+.+|++.++.+|++.|+.||..
T Consensus 197 ~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn 273 (291)
T PRK12874 197 KRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAY---LGVIVSALILLYEHYLVRKDFKKIDKAFFTLN 273 (291)
T ss_pred HcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 999999999999999988876666666666666666656555442 3555666789999999988888889998864
Q ss_pred ------HHHHHHHhhccc
Q 047278 239 ------IWKTQLVSLKWK 250 (252)
Q Consensus 239 ------~~~~~~~~y~~~ 250 (252)
++.+..+||++|
T Consensus 274 ~~l~~l~~~~~~~~~~~~ 291 (291)
T PRK12874 274 GYLGIVFFIFIVLDVLFK 291 (291)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 666777888876
No 11
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2.2e-37 Score=271.52 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=183.0
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++++++++++|++||++|+|+|++|+ |+||+|+|++|++++..+..++.++++.++..+|..+..++ ..+.+..+
T Consensus 41 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~ 119 (282)
T TIGR01475 41 ILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLI 119 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 4678999999999999999999999994 89999999999999999988888778878887787666665 34555678
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. +||++.++|++.++..|.++..|+. +..|.. +.....+.+.+..++|+.+++++|++||+|+|+
T Consensus 120 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g~~-~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~ 187 (282)
T TIGR01475 120 IYPY------TKRFTFLCHYVLGSTYGLAPLAGWV-----AVIGTI-SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDR 187 (282)
T ss_pred HHhh------HhccccccHHHHHHHHHHHHHHHHH-----HHhCCc-cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 8985 7999999999998877765555543 233321 111344555566788999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH-HHHH
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS-FYMF 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~-f~~~ 238 (252)
++|+||+|+++|+|+++++......+++......+...+.++.|.. +..+....+.++++..|.+|+++|.+ ||..
T Consensus 188 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 188 KNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALL---ALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred HcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999888888888777778888777876643 34445577889999999999999986 5543
Q ss_pred -------HHHHHHHhhc
Q 047278 239 -------IWKTQLVSLK 248 (252)
Q Consensus 239 -------~~~~~~~~y~ 248 (252)
+..++..+|+
T Consensus 265 ~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 265 NGFLSITFLIGVIIDVL 281 (282)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 4456666664
No 12
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=3.7e-37 Score=269.90 Aligned_cols=227 Identities=15% Similarity=0.161 Sum_probs=180.0
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++.+++++++|++||++|+|+|++|+ |+||+|||++|++|+..++.++..+++.+++.+|+.+..++ ..+.+..+
T Consensus 47 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 125 (282)
T PRK12848 47 FVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAW 125 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 3577889999999999999999999876 68999999999999999999999999988888887776666 45556678
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. .||++.+++++.++..|..+.+++.. ..+ +.+...+++.+...+|+...++.|++||+|+|+
T Consensus 126 ~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 191 (282)
T PRK12848 126 IYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL 191 (282)
T ss_pred HHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 9984 69999999999888777655555432 223 245556666667889999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
++|+||+|+++|+|++.+.. .+..+........++..++++.|.. +..+....+.+|++.+|.+|+++|+++|..
T Consensus 192 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n 267 (282)
T PRK12848 192 KIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGWAYYW---GLLVAAALFVYQQKLIRDREREACFKAFLNN 267 (282)
T ss_pred HcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 99999999999999887776 3455555555666776677766543 445666788899999999999999888864
Q ss_pred ------HHHHHHHhh
Q 047278 239 ------IWKTQLVSL 247 (252)
Q Consensus 239 ------~~~~~~~~y 247 (252)
++.++.+||
T Consensus 268 ~~~g~~l~~~~~~~~ 282 (282)
T PRK12848 268 NWVGLVLFAGIAASY 282 (282)
T ss_pred cHHHHHHHHHHHHhC
Confidence 555555554
No 13
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=7.9e-37 Score=267.66 Aligned_cols=227 Identities=16% Similarity=0.204 Sum_probs=178.5
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++.+++++++|++|||+|+|+|++|+ |+||+|+|++|++|++.+..++.++++.+++..|+.+..++ +.+.+..+
T Consensus 45 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 123 (281)
T TIGR01474 45 FTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVA 123 (281)
T ss_pred HHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHH
Confidence 3567889999999999999999999776 69999999999999999999999999999888887777666 46666789
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. +||++.+++++.++..+..+..|++ +..|. .++..+++.....+|+.+++++|++||+|+|+
T Consensus 124 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~ 189 (281)
T TIGR01474 124 TYPF------MKRITYWPQLVLGLAFGWGALMGWA-----AVTGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDI 189 (281)
T ss_pred Hhch------hcccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 9995 7999999999988776655555543 23332 34555555566788999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
++|+||+|+++|+++++.. ..+..++.....+.+...+.++.|.. +..+....+.+++.++|.+|+++|+++|+.
T Consensus 190 ~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 265 (281)
T TIGR01474 190 KIGVKSTALRFGDNTKPWL-GGLYALMILLLALAGLIAGLGPVYYL---GLAAAALLLIRQIATLDIRDPENCLKLFKAN 265 (281)
T ss_pred HcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999876444 44454544455556666677766543 445566788899999999999999999985
Q ss_pred ------HHHHHHHhh
Q 047278 239 ------IWKTQLVSL 247 (252)
Q Consensus 239 ------~~~~~~~~y 247 (252)
+..+...||
T Consensus 266 ~~~~~~l~~~~~~~~ 280 (281)
T TIGR01474 266 NYVGLLLFAGIALGW 280 (281)
T ss_pred hHHHHHHHHHHHHHh
Confidence 455555555
No 14
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.9e-36 Score=264.77 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=172.4
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++++++++++|++|||+|+|+|++|+ |+||+++|++|++|+..+..++.++++.+++.+|+.+..++ +.+.+..+
T Consensus 50 ~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 128 (285)
T PRK12847 50 FIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIV 128 (285)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 4678899999999999999999999876 68999999999999999999999999988888887777666 45666788
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. .||++.+++++.++.++..+..++. +..|. .++..+++.+..++|+.+++++|++||+|+|+
T Consensus 129 ~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~-----a~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 194 (285)
T PRK12847 129 LYPL------MKRFFYWPQLFLGFTFNMGILMAFA-----AVQNQ---LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDL 194 (285)
T ss_pred hccc------cccCCcccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 9995 6999999999987776654444442 23332 45566666677889999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (252)
++|+||+|+++|+|++.++........+.. ...++..+.++.+.+ ++.+....+.+++..+|.+|+++|++.|..
T Consensus 195 ~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~---~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 269 (285)
T PRK12847 195 KIGVKSTAIYFGNKTRKYILRLYIISLILW-LILGIISSLHNIFYL---AILAAAGIFYYQYKLLDFDNPANCMYAFKA 269 (285)
T ss_pred HcCCchhHHHhccccHHHHHHHHHHHHHHH-HHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999988877665444443 445555554433322 333445688899999999999999988875
No 15
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.6e-36 Score=267.58 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=179.1
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++++++++++|++|||+|+|+|++|+ ++||+++|++|++|+..+..++.++++.+.+..|+++..++ +.+++..+
T Consensus 77 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~ 155 (314)
T PRK12878 77 FFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVA 155 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 4678999999999999999999999877 79999999999999999999999999988888787666666 46666788
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. +||++.+++...++..+..+.+||+. ..|. .++..+.+.+..++|+.+.++++++||+|+|+
T Consensus 156 ~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 221 (314)
T PRK12878 156 AYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDA 221 (314)
T ss_pred HHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 9985 79999999998877666544455432 2332 45555566666788999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
++|+||+|+++|+++++++.. +..+......+.+....+++.|++ +.......+.+|+.++|.+|+++|+++|+.
T Consensus 222 ~aGi~slpv~~G~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n 297 (314)
T PRK12878 222 LIGVKSTARLFGDHTKTWLVL-FYGLAVLLMGLAFWLAGVPLLALL---GLLAAAAHLAWQIARLDIDDPDQCLRLFKSN 297 (314)
T ss_pred HcCCcccchHhchhhHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcccCChHHHHHHHHHh
Confidence 999999999999999888774 344444445556666666776543 333344568899999999999999999985
Q ss_pred ------HHHHHHHhhc
Q 047278 239 ------IWKTQLVSLK 248 (252)
Q Consensus 239 ------~~~~~~~~y~ 248 (252)
++.++..||+
T Consensus 298 ~~~~~ll~~~l~~~~~ 313 (314)
T PRK12878 298 RDAGLLIFLGLVVGGL 313 (314)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4556666664
No 16
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.4e-36 Score=264.50 Aligned_cols=229 Identities=18% Similarity=0.209 Sum_probs=179.2
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (252)
++++.+++++++|++||++|+|+|++|+ |+||+++|++|++|+..+...+.+.++.+....|+.+..++ ..+.+...
T Consensus 47 ~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~ 125 (291)
T PRK12886 47 ILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLS-PPALFFLL 125 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3578899999999999999999999998 79999999999999998876666666666667787777666 34555678
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||+ +||++.+++++.++.++.++..|+. +..|. .+.+.+++.+...+|+.++|++|++||+|+|+
T Consensus 126 ~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~ 191 (291)
T PRK12886 126 LYSY------CKRFTALAHVVLGFCLALAPLGAWI-----AIRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDR 191 (291)
T ss_pred HHhh------hhccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHH
Confidence 9995 6999999999998877655444443 23332 35555666666788999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCch-HHHHHHHHH
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSN-ASTLSFYMF 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~-~~~~~f~~~ 238 (252)
++|+||+|+++|++++.++......+++......+.....++.|.. +..+....+.++++.++.+|+ ++|+++|..
T Consensus 192 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 268 (291)
T PRK12886 192 KEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLA---GLAVTGILLLYEHWLLRGGDLTRLDAAFFNM 268 (291)
T ss_pred HcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999988877777777777777777777876643 333455566689899999885 589897764
Q ss_pred -------HHHHHHHhhc
Q 047278 239 -------IWKTQLVSLK 248 (252)
Q Consensus 239 -------~~~~~~~~y~ 248 (252)
++.++.+|+.
T Consensus 269 ~~~~~~~l~~~~~~~~~ 285 (291)
T PRK12886 269 NGYISVTLFAATLFDRL 285 (291)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 5555555554
No 17
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-36 Score=264.04 Aligned_cols=217 Identities=19% Similarity=0.300 Sum_probs=181.2
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKP--DLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++++++++++|++||++|+|+||+|+| +||+|||++|+++++.+..++.++++.+++.+|+.+..++ ..+.++.+.
T Consensus 53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~ 131 (289)
T COG0382 53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALA 131 (289)
T ss_pred HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 5678999999999999999999999997 9999999999999999999999999999999998776666 567778899
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK 160 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~ 160 (252)
|+. +||+++++|++++...+..+..|+. +..|. .+...+++.++..+|+.++|++|++||+|+|++
T Consensus 132 Y~~------~Kr~~~~~~~~lg~~~~~~~~~g~~-----a~~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~ 197 (289)
T COG0382 132 YPF------LKRFTFLPQLVLGLAFGLGALAGAA-----AVGGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRK 197 (289)
T ss_pred HHH------hhcCCchHHHHHHHHHHHHHHHHHH-----HHhCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence 964 8999999999998877755445442 23221 355566777788899999999999999999999
Q ss_pred cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278 161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPL-SKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238 (252)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (252)
.|+||+|+.+|++++..++...+ .....+...++...... .+ ..++...+..+.+|+..+|.+++++|.++|..
T Consensus 198 ~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (289)
T COG0382 198 AGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLGLIY---LLGLLVAALLLLYQILIVDVRDPPACFALFDV 272 (289)
T ss_pred cCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhchHHH---HHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 99999999999999999988777 55555556666665553 33 34666777889999999999999999999986
No 18
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.5e-38 Score=262.90 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY 81 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y 81 (252)
+++++||+++|++||..|+|+|++++ +.||++||++|++||..+...++.+++.+..++|+.+..++ ..++.+.+.|
T Consensus 110 ~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~y 188 (353)
T KOG1381|consen 110 VGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITY 188 (353)
T ss_pred ccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEe
Confidence 57899999999999999999999987 78999999999999999999999999999999998888776 5677778899
Q ss_pred cCCccccccccCCCchhHHHHHH--HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 82 SIQLPFLRWKGHPFLAPFSMMIL--MGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 82 s~~~pp~rlKr~~~~~~~~~~~~--~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
|. +||+++++|++++.. ||. .+|| +++-|.. .+....-+++...+|++.+|++|+|||.++|.
T Consensus 189 pl------~kr~TY~pq~vLgltfnwGA--llGw-----~A~~g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDv 253 (353)
T KOG1381|consen 189 PL------MKRFTYWPQLVLGLTFNWGA--LLGW-----CALKGSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDV 253 (353)
T ss_pred eh------hhhcchhHHHHHhhhcchhh--hhcc-----hhhcCcc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhh
Confidence 96 899999999998643 332 2343 3444431 12223345566778999999999999999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
+.|+||++.+||+++ +.+..++-......+..+|+.+++.+.|+. ++.+.+.+|.+|+.++|++||++|+++|..
T Consensus 254 k~gvkSTALrfG~nT-K~wl~gf~a~~ia~La~aG~~s~q~~pyy~---~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN 329 (353)
T KOG1381|consen 254 KIGVKSTALRFGDNT-KPWLSGFGAAQIASLAAAGIASDQTWPYYA---ALGAVAARLGSQIYKVDIDNPSDCWKKFKSN 329 (353)
T ss_pred HhcchhhhhhcCCCC-chHHhhhhHHHHHHHHHhhhccCCCchHHH---HHHHHHHHHHhheeeeecCChHHHHHHHHhc
Confidence 999999999999984 555555677778888899999999987744 456777999999999999999999999974
Q ss_pred ------HHHHHHHhhccc
Q 047278 239 ------IWKTQLVSLKWK 250 (252)
Q Consensus 239 ------~~~~~~~~y~~~ 250 (252)
+..+...+|+.|
T Consensus 330 ~ntGli~~~~i~~d~llk 347 (353)
T KOG1381|consen 330 SNTGLILFSGIVLDTLLK 347 (353)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 444555566554
No 19
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.7e-35 Score=254.68 Aligned_cols=226 Identities=22% Similarity=0.319 Sum_probs=168.2
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY 81 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y 81 (252)
++++.+++++++|++||++|+|+|++|+|+||+++|++|++|++.++.++.++++.+++.+|+.+..++ ..+.+..+.|
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Y 121 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLY 121 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999888887666665 4555567899
Q ss_pred cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278 82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF 161 (252)
Q Consensus 82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~ 161 (252)
|. |+||+|.++|++++...|..+..|+ +..+.. .....+.+.+..++|+.++|++||+||+|+|+++
T Consensus 122 t~-----~lK~~~~~g~~~vg~~~g~~~~~g~------~~~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~ 188 (276)
T PRK12882 122 AE-----TLKGTPGLGNASVAYLTGSTFLFGG------AAVGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAE 188 (276)
T ss_pred HH-----HHhcccchhHHHHHHHHHHHHHHHH------HHhccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHc
Confidence 84 5899999899988766664333332 122211 1223334445566788899999999999999999
Q ss_pred CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-HH
Q 047278 162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-IW 240 (252)
Q Consensus 162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-~~ 240 (252)
|+||+|+++|+|++.++......+..............++.|... ........+.++.+..|.+|+++|+++|+. .|
T Consensus 189 G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 266 (276)
T PRK12882 189 GARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVL--VAPADLVMLAAAYRSLKKTDPTASQKLLKYGMF 266 (276)
T ss_pred CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999887766655554433222234455554321 122223445567788888999999998875 45
Q ss_pred HHH
Q 047278 241 KTQ 243 (252)
Q Consensus 241 ~~~ 243 (252)
-+.
T Consensus 267 ~g~ 269 (276)
T PRK12882 267 LAL 269 (276)
T ss_pred HHH
Confidence 444
No 20
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.3e-34 Score=249.29 Aligned_cols=219 Identities=19% Similarity=0.325 Sum_probs=169.0
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY 81 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y 81 (252)
+.++.+++++++|++||++|+|+|++|+|+||+++|++|+++++.++.++.++++.++..+|+....+. +.+.+.++.|
T Consensus 42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Y 120 (279)
T PRK12884 42 GFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILY 120 (279)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999998888887666665 4566678899
Q ss_pred cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278 82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF 161 (252)
Q Consensus 82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~ 161 (252)
|. ++||+++.++++.+..+|.+...++. +. +. .+...+++....++|+.+.++++|++|+|+|+++
T Consensus 121 s~-----~lK~~~~~~~~~~~~~~~~~~~~g~~-----~~-~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~ 186 (279)
T PRK12884 121 NW-----KLKEYGLIGNLYVAFLTGMTFIFGGI-----AV-GE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLR 186 (279)
T ss_pred HH-----hhccccchhHHHHHHHHHHHHHHHHH-----Hh-CC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHc
Confidence 95 47999988999988777754444432 22 21 1224445555667889999999999999999999
Q ss_pred CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh-hhcccCchHHHHHHHHH
Q 047278 162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRA-KTVDLSSNASTLSFYMF 238 (252)
Q Consensus 162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~ 238 (252)
|+||+|+++|+|++.++........++...........++.|.. ...+....+.+++ +..+.+|+++|+++...
T Consensus 187 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (279)
T PRK12884 187 GARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLA---PVLVADLIFLYSAYSLLRSQDRETIRKVRKI 261 (279)
T ss_pred CCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999998887777777655555555555665533 2334445555664 66777778888776443
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=6.5e-34 Score=249.18 Aligned_cols=223 Identities=18% Similarity=0.254 Sum_probs=164.8
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY 81 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y 81 (252)
++++++++++++|++||++|+|+|++|+|+||+|+|++|+++++.++..+.++++.++...|+.+..++ +.+.+..+.|
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y 120 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLY 120 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999998888887777666 4555667899
Q ss_pred cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278 82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF 161 (252)
Q Consensus 82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~ 161 (252)
|. ++||++.++|++++...|..+..|+. +..+ ....+++....++|+.+++++||+||+|+|+++
T Consensus 121 s~-----~lKr~~~~~~~~vg~~~G~~~~~g~~-----~~~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~ 185 (279)
T PRK09573 121 AK-----DLKKTGLIGNLIVAYLTGLSFIFGGL-----AVFN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKE 185 (279)
T ss_pred HH-----HHhcCCcHHHHHHHHHHHHHHHHHHH-----HHcc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHC
Confidence 94 37999999999998877765444442 2222 122333444556788899999999999999999
Q ss_pred CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH-hhhcccCchHHHHHHHHH-H
Q 047278 162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLR-AKTVDLSSNASTLSFYMF-I 239 (252)
Q Consensus 162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~-~~~~d~~~~~~~~~f~~~-~ 239 (252)
|+||+|+++|+|++.++......+..............++.|.. +..+....+.++ .+..+.+|+++|.+-.+. .
T Consensus 186 G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 262 (279)
T PRK09573 186 NVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLI---VVIICDILFIIAMLILLKNPSIEGASKASKYLK 262 (279)
T ss_pred CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999998776665555444333333335555533 222233344444 455666778888766543 4
Q ss_pred HHHH
Q 047278 240 WKTQ 243 (252)
Q Consensus 240 ~~~~ 243 (252)
+.+|
T Consensus 263 ~~m~ 266 (279)
T PRK09573 263 IIMI 266 (279)
T ss_pred HHHH
Confidence 4433
No 22
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=4.6e-34 Score=254.30 Aligned_cols=212 Identities=18% Similarity=0.321 Sum_probs=160.7
Q ss_pred HHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHhc
Q 047278 10 NIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRS-------PPLLLALIIWFLLGSAYS 82 (252)
Q Consensus 10 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~~~~~l~~~Ys 82 (252)
++++|++|||+|+|+|++|+|+||+++|++|++|++.+..++..+++.++..++. +.+....+.+++++++||
T Consensus 63 ~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS 142 (331)
T PRK12392 63 TGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS 142 (331)
T ss_pred HHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc
Confidence 4568999999999999999999999999999999999998888888877766542 222222245667889999
Q ss_pred CCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcC
Q 047278 83 IQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFD 162 (252)
Q Consensus 83 ~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G 162 (252)
.||+|+||+++.++..+++.++.....++ .+..+. .++..+++.+..++|+.+++++||+||+|+|++.|
T Consensus 143 --~~P~~lKr~~~~g~~~vGl~~~~~~~~~~-----~a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G 212 (331)
T PRK12392 143 --APPLKLKKNILTSAPAVGFSYGFITFLSA-----NALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGG 212 (331)
T ss_pred --CCchhhhccchhHHHHHHHHHHHHHHHHH-----HHHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcC
Confidence 69999999998888887766654322222 233442 45555566667788999999999999999999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHH
Q 047278 163 IQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFY 236 (252)
Q Consensus 163 ~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~ 236 (252)
+||+|+++|++++.+++...+.++.+..+..++...+++.+.+ ...+.+.++.+|.+. .+||++-.+|-
T Consensus 213 ~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~l--~r~p~~~~~~~ 281 (331)
T PRK12392 213 LKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYF---ILVGLVLNIVIQIQL--YRDPKGGISFM 281 (331)
T ss_pred CeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHH--HhChhhhhHHH
Confidence 9999999999999999887776777777788888888865533 344555677777764 33455444443
No 23
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=250.39 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSI 83 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~ 83 (252)
++..++++++|++|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.+++.+|++...++ +.+++.+++||
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt- 149 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYS- 149 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhc-
Confidence 4566689999999999999999999999999999999999999999999999988888887666665 45666789999
Q ss_pred CccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCc
Q 047278 84 QLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDI 163 (252)
Q Consensus 84 ~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~ 163 (252)
.||+++||+++++|+++++.+|..+..+.+ .+..+. ..++..++..+...+++.+++.+||++|+|+|+++|+
T Consensus 150 -~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~----~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~ 222 (314)
T PRK07566 150 -APPLRLKQNGWLGNYAVGLSYEGLPWWAGA----AAFGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGL 222 (314)
T ss_pred -CCccccccccchhhHHHHHHHHHHHHHHHH----HHhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCC
Confidence 789999999988999998766532222211 122211 2345555555566678889999999999999999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHHHHHH
Q 047278 164 QTLSVIVGRERVFWLCVSMMLTAYGAA 190 (252)
Q Consensus 164 ~Tl~v~~G~~~~~~l~~~l~~~~~~~~ 190 (252)
||+|+++|++++++++..+..+.++..
T Consensus 223 ~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 223 RSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred cccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877776666554
No 24
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=2.7e-33 Score=247.03 Aligned_cols=234 Identities=13% Similarity=0.070 Sum_probs=170.4
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLG 78 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~ 78 (252)
++++++++++++|++|||+|+|+|++|+ |+||+++|++|++|+..++.++.++++.+++. .|+.+..++.+......
T Consensus 49 ~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~ 128 (296)
T PRK04375 49 TLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYV 128 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999988 89999999999999999999999888888755 45555554422222345
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD 158 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D 158 (252)
..||. ++||+++.++.+.++..+.++..|+. +..| +.++..+++.+..++|+...+..++++|+|||
T Consensus 129 ~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~ 195 (296)
T PRK04375 129 VVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWA-----AVTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDY 195 (296)
T ss_pred HHhcc-----chhcCCccchHHHHHHHHhHHHHHHH-----HhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 68885 48999976555555544444444543 2333 24555666677788999999999999999999
Q ss_pred HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278 159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238 (252)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (252)
+++|+||+|+++|++++++.......+......+.......++.|.. .+....+..+.++++.++.+|+++|++.|..
T Consensus 196 ~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 273 (296)
T PRK04375 196 AAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLV--VALLLGAWFLYYAWRLYRKDDRKWARKLFRY 273 (296)
T ss_pred HHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHH
Confidence 99999999999999998887665554444433333333445665533 1334455677788999999899999877764
Q ss_pred -------HHHHHHHhhccc
Q 047278 239 -------IWKTQLVSLKWK 250 (252)
Q Consensus 239 -------~~~~~~~~y~~~ 250 (252)
++.+...|++++
T Consensus 274 s~~~~~~i~~~~~~~~~~~ 292 (296)
T PRK04375 274 SINYLTLLFVALLVDHLLL 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 455555665543
No 25
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=6.1e-33 Score=243.51 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=148.0
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHh
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPP-LLLALIIWFLLGSAY 81 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~-~~~~~~~~~~l~~~Y 81 (252)
++++.+.++++|++|||+|+|+|++|+|+||+++|++|+++++....++..+++.+++.++++. ..++ ..+.+.+++|
T Consensus 44 ~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Y 122 (283)
T TIGR01476 44 LMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIY 122 (283)
T ss_pred HHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhee
Confidence 4678889999999999999999999999999999999999999999999999998888877655 3333 4566678999
Q ss_pred cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278 82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF 161 (252)
Q Consensus 82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~ 161 (252)
| .||+|+||+++++++.+++..+.....+. ....+ ..++..++..+...+++.+++.+||+||+|+|+++
T Consensus 123 s--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~ 192 (283)
T TIGR01476 123 S--MPPIKLKRNGWLGPPAVGLSYEGLPWMAG-----HAIFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQL 192 (283)
T ss_pred c--CchhhhccCCCccHHHHHHHHHHHHHHHH-----HHHhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHc
Confidence 9 79999999998899988765442211111 12222 13555555555667788899999999999999999
Q ss_pred CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 047278 162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPL 201 (252)
Q Consensus 162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~ 201 (252)
|+||+|+++|+|++++++..+....+...+........++
T Consensus 193 G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~ 232 (283)
T TIGR01476 193 GLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPW 232 (283)
T ss_pred CCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999999999988877777765554444444544
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=239.13 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=163.6
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~ 79 (252)
.++..++++++|++||++|+|+|++|+ |+||+|+|++|++|+..++..+.++++.++.. +|+.+.....+...+..+
T Consensus 42 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 121 (279)
T PRK12869 42 LIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAV 121 (279)
T ss_pred HHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568889999999999999999999988 89999999999999999999999999988877 675543332234445667
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR 159 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~ 159 (252)
.||. ++||+++.++++.++.++.++..|+. +..|. .+...+++.+..++|+.+.....+++|+|||+
T Consensus 122 ~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~ 188 (279)
T PRK12869 122 VYTI-----WLKPRTWLNIVIGGFAGNAAALAGYA-----SGTGS---LDLEAVLLSFLIYLWTPGHIWSLALKYREDYR 188 (279)
T ss_pred hhCc-----ccccCChHHHHHHHHHHHHHHHHHHH-----HHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 8885 38999997766666554444434432 22232 45555666666778888877667889999999
Q ss_pred hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278 160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF- 238 (252)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~- 238 (252)
++|+||+|+++|+|++.+....+..+........+. ...++.|... .....+..+.++.+..+.+|+++|++.|+.
T Consensus 189 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s 265 (279)
T PRK12869 189 RAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLIL--VAILSAALMATSIRALLNPTKEEAWKMFKAS 265 (279)
T ss_pred HcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHH--HHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence 999999999999999998877666665555555554 5667766331 112233456677777887888899887764
Q ss_pred HHH
Q 047278 239 IWK 241 (252)
Q Consensus 239 ~~~ 241 (252)
+|-
T Consensus 266 ~~~ 268 (279)
T PRK12869 266 SPY 268 (279)
T ss_pred HHH
Confidence 444
No 27
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=2.8e-32 Score=238.99 Aligned_cols=221 Identities=15% Similarity=0.116 Sum_probs=164.9
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH-H
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMG-VMFRSPPLLLALIIWFL-L 77 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~-l 77 (252)
.+++++++++++|++|||+|+|+|++|+ |+||+++|++|++|+..++.++.++++.+. ...|+....++ ..+.+ .
T Consensus 40 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~ 118 (280)
T TIGR01473 40 TLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFY 118 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 3578999999999999999999999977 899999999999999999999998888844 44676555555 34443 3
Q ss_pred HHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278 78 GSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG 157 (252)
Q Consensus 78 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~ 157 (252)
.+.||.. +||+++.++++.++.++.++..|+. +..|. .++..+++.....+|+...+..++++|+||
T Consensus 119 ~~~Yt~~-----lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~~~~d 185 (280)
T TIGR01473 119 VIVYTIW-----LKRRTPQNTVIGGFAGAVPPLIGWA-----AVTGS---ISLGAWLLFAIIFLWQPPHFWALALKYKDD 185 (280)
T ss_pred HhhcChh-----hccCCchhHHHHHHHHHHHHHHHHH-----HhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789942 7999998777766554444444432 22232 355555566667789888888889999999
Q ss_pred hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccC-chHHHHHHH
Q 047278 158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLS-SNASTLSFY 236 (252)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~-~~~~~~~f~ 236 (252)
|+++|+||+|+++|+|++.+..............+.+.....++.|.. .+.......+.++++..|.+ |+++|++.|
T Consensus 186 d~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f 263 (280)
T TIGR01473 186 YRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLI--VATLLGALFLYLAFKFYRDPTDRKKARKLF 263 (280)
T ss_pred HHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999999999988877665555545444445556667776632 24445556788899888887 777898877
Q ss_pred HH
Q 047278 237 MF 238 (252)
Q Consensus 237 ~~ 238 (252)
+.
T Consensus 264 ~~ 265 (280)
T TIGR01473 264 KF 265 (280)
T ss_pred HH
Confidence 64
No 28
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=6.4e-32 Score=243.70 Aligned_cols=228 Identities=21% Similarity=0.315 Sum_probs=157.7
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMF-------RSPPLLLALIIWF 75 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~ 75 (252)
+++..++++++|++|||+|+|+|++|+|+||+++|++|+++++.....+..+++.+++.+ ++....++ +.++
T Consensus 129 ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi 207 (375)
T PLN00012 129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGS 207 (375)
T ss_pred HHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHH
Confidence 466778899999999999999999999999999999999999987666666666555543 22233334 4566
Q ss_pred HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278 76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV 155 (252)
Q Consensus 76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~ 155 (252)
++.++|| .||+++||+++++++.++...+. ++++. +.+..|. .++..+++.+..++|+.+++++||+||+
T Consensus 208 ~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~---lp~~~--g~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Di 277 (375)
T PLN00012 208 LLSYIYS--APPLKLKQNGWIGNYALGASYIS---LPWWA--GQALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSI 277 (375)
T ss_pred HHhhhhc--CCchhhhHhccHhHHHHHHHHHH---HHHHH--HHHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 6789999 79999999999999887655442 33321 1233442 4555666666677899999999999999
Q ss_pred hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH
Q 047278 156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSF-PLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS 234 (252)
Q Consensus 156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~ 234 (252)
|+|+++|+||+|+++|++++++++..++.+..... +++.... .+.|.... ..+....+.++.+ ...+||+++..
T Consensus 278 e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~--~~~l~~~~~~~y~~~~--~~l~l~~l~~~~~-~~~~~p~~~~~ 352 (375)
T PLN00012 278 EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV--AGYLLAIGKPYYALAL--LGLIIPQIFFQFK-YFLPDPVKNDV 352 (375)
T ss_pred hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH--HHHHHHHHHHHHH-HHhcCHHHHHH
Confidence 99999999999999999999998765444443322 2333222 22221111 1222233444433 34459999988
Q ss_pred HHHH------HHHHHHHh
Q 047278 235 FYMF------IWKTQLVS 246 (252)
Q Consensus 235 f~~~------~~~~~~~~ 246 (252)
.|.. .++.+...
T Consensus 353 ~~~~~a~~~~~~~~l~~~ 370 (375)
T PLN00012 353 KYQASAQPFLVFGLLVTA 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 8863 55554443
No 29
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.7e-31 Score=236.40 Aligned_cols=178 Identities=22% Similarity=0.408 Sum_probs=139.7
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR-------SPPLLLALIIWF 75 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~-------~~~~~~~~~~~~ 75 (252)
++++.++++++|.+|||+|+|.|+.|+|+||+++|++|++++......+..+++.++..+. ++...++ +.++
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~ 138 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGS 138 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHH
Confidence 4667899999999999999999999999999999999999999988888887777766542 2334444 5667
Q ss_pred HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278 76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV 155 (252)
Q Consensus 76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~ 155 (252)
+.+++|| .||+|+||+++++++.++...+.. +++. +....| +.++..++..+..++|+.++++.||++|+
T Consensus 139 ~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~---~~~~--~~a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~ 208 (306)
T TIGR02056 139 FIAFIYS--APPLKLKQNGWLGNFALGASYIAL---PWWA--GHALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSV 208 (306)
T ss_pred HHHHHHc--CChhhhhhcccHHHHHHHHHHHHH---HHHH--HHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccCh
Confidence 7789999 799999999988998876554432 2211 112233 24555556666677899999999999999
Q ss_pred hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHH
Q 047278 156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAI 191 (252)
Q Consensus 156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~ 191 (252)
|+|+++|+||+|+++|+|++++++..+....+...+
T Consensus 209 e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~ 244 (306)
T TIGR02056 209 EGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIA 244 (306)
T ss_pred HHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877666555443
No 30
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-30 Score=228.98 Aligned_cols=225 Identities=16% Similarity=0.196 Sum_probs=163.7
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC-----CCCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK-----PDLPLASGDFSRGTGIAIALISSLTSLTMGV----MFRSPPLLLALI 72 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~-----~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~----~~~~~~~~~~~~ 72 (252)
++++++++|+++|.+|||+|+|.|+.|+ |+||+++|++|++|++....++..+++.++. ..+.+.+.++ +
T Consensus 45 ~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~ 123 (296)
T PRK05951 45 MLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-L 123 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-H
Confidence 4689999999999999999965554444 7899999999999999988776665554432 2344444444 5
Q ss_pred HHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278 73 IWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV 152 (252)
Q Consensus 73 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (252)
.+.+.++.|| .||+++|++++ +++.+++.+|....+|.+. ...+ ..++..+...+...+++.....+|++
T Consensus 124 ~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~-----~~~~--~~~~~~~~~sl~~~l~~~~il~~n~~ 193 (296)
T PRK05951 124 LGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIY-----VWLG--NLSSPNLLAGVPLGLLMALVLLSNNL 193 (296)
T ss_pred HHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-----HHhC--cccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6777889999 79999998876 8998888888544555432 1111 23445555555667788888999999
Q ss_pred CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHH
Q 047278 153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAST 232 (252)
Q Consensus 153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~ 232 (252)
||+|+|+++|+||+|+++|+|++ ++...+...+|+..+........++...+..+++-....++.+++++.|.+++++|
T Consensus 194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~ 272 (296)
T PRK05951 194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEAT 272 (296)
T ss_pred ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHH
Confidence 99999999999999999999999 66666666666665555555444543333344544445566677788888888888
Q ss_pred HHHHHH
Q 047278 233 LSFYMF 238 (252)
Q Consensus 233 ~~f~~~ 238 (252)
.+.+..
T Consensus 273 ~~~~~~ 278 (296)
T PRK05951 273 VQLFML 278 (296)
T ss_pred HHHHHH
Confidence 888775
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=1.3e-30 Score=226.46 Aligned_cols=173 Identities=21% Similarity=0.252 Sum_probs=131.7
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHH----HHHHHHHHhcCHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSL----TSLTMGVMFRSPPLLLALIIWFLLG 78 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~----l~l~l~~~~~~~~~~~~~~~~~~l~ 78 (252)
+..++..|.+.|++||++|+|+|++|+|+||+++|++|++++..+...... +++.+++..++.+..+. ..+.++.
T Consensus 53 ~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~ 131 (292)
T PRK13595 53 LYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALF 131 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 456777889999999999999999999999999999999999886443333 34556666676666655 4566788
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD 158 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D 158 (252)
+.|| .||+|+|++|++++++.. ..|.+. ++ +....|.. +....+ ....+|+.++|++|++||+|+|
T Consensus 132 ~~YS--~pPlRlK~rp~l~~l~~~-~~g~p~--~~----~~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegD 197 (292)
T PRK13595 132 VGYS--LPPLRFKARPFLDGLSNA-AYALPL--AL----PALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPAD 197 (292)
T ss_pred HHHc--cCccchhcCcchhHHHHH-HHHHHH--HH----HHHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhH
Confidence 9999 799999999999888763 234321 11 12333421 122222 3456788999999999999999
Q ss_pred HhcCcccchhhhchHHHHHHHHHHHHHHHHHH
Q 047278 159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAA 190 (252)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~ 190 (252)
|+.|+||+|+++|+|++.+++..+..++..++
T Consensus 198 r~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~ 229 (292)
T PRK13595 198 RAAGTRTVATTLGVRGTALYALAWFLLAGALL 229 (292)
T ss_pred HHcCCeechHHhCcHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888776655443
No 32
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=9.2e-30 Score=222.76 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=146.9
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYS 82 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys 82 (252)
+++.+++++++|++||++|+|+|++|+|+||+++|++|++++..+..++.++++.+++..|+.+..++ ..+...++.||
T Consensus 43 ~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~ 121 (277)
T PRK12883 43 FLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYA 121 (277)
T ss_pred HHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 45778889999999999999999999999999999999999999999999999988888887776665 45556788999
Q ss_pred CCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcC
Q 047278 83 IQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFD 162 (252)
Q Consensus 83 ~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G 162 (252)
. |+||+++++|++++...|..+..|+. +. +. .+...+.. ...++++...++.||+||+|+|+++|
T Consensus 122 ~-----~~k~~~~lg~~~vg~~~g~~~~~g~~-----a~-~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G 186 (277)
T PRK12883 122 W-----KLKPLPFIGNVVVALLTGATPIYGAI-----AV-GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKG 186 (277)
T ss_pred h-----cccCCcchhhHHHHHHHHHHHHHHHH-----Hh-cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcC
Confidence 5 47999888999988777743333332 11 21 23332222 23456677889999999999999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHH
Q 047278 163 IQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAS 231 (252)
Q Consensus 163 ~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~ 231 (252)
+||+|+++|+|+++++............. .......++.|... ....+..+..+.+..+.+|+++
T Consensus 187 ~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~-l~~~~~~~~~y~~~---~~~~~~~l~~~~~~~~~~~~~~ 251 (277)
T PRK12883 187 AKTLPIIIGKKRAAYIGAIFGVLTVIASF-LPVKAGIGLGYLPI---IIVDAIILYAAYLVLRNPDRET 251 (277)
T ss_pred CcCcChHhcHHHHHHHHHHHHHHHHHHHH-HHHHHcccHHHHHH---HHHHHHHHHHHHHHHhCcchhH
Confidence 99999999999998876554333222211 12222224433221 1122334545555555555543
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=1.6e-29 Score=222.95 Aligned_cols=191 Identities=19% Similarity=0.166 Sum_probs=149.2
Q ss_pred ccHHHHHHHHHHHHhhhhcch--hhhhc--CCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDV--EIDKV--NKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM----FRSPPLLLALII 73 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~--~~D~~--n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~ 73 (252)
++++++++++++|.+|||+|+ |.|++ ++|+||+++|++|++|+...+..+.++++.++.. .+++...++ +.
T Consensus 43 ~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~ 121 (293)
T PRK06080 43 ALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LL 121 (293)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence 367889999999999999999 56754 4589999999999999998877666655554433 344444444 45
Q ss_pred HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278 74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLL-FFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV 152 (252)
Q Consensus 74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (252)
+.+.++.|| .||.|+|++++ +|+..++.+|.....+ ++. ..+ ..+++.++..+...+|+...+++||+
T Consensus 122 ~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~ 190 (293)
T PRK06080 122 CIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTYYL-----QAG---TVDSAVFLPALPCGLLIGAVLLANNI 190 (293)
T ss_pred HHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667789999 68988888876 8998887777543333 221 112 24556666667788899999999999
Q ss_pred CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 047278 153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKL 204 (252)
Q Consensus 153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~ 204 (252)
+|+|+|+++|+||+|+++|+|+++++...+..++++..+.......+|+.+.
T Consensus 191 ~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 242 (293)
T PRK06080 191 RDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGL 242 (293)
T ss_pred CcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999988887777777777543
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=2.5e-29 Score=222.07 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=131.5
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLG 78 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~ 78 (252)
++++..+.++++|++||++|+|+|++++ ++||+|+|++|+++|..++.++..+++.++.. .|..+..+..+..+...
T Consensus 52 ~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~ 131 (306)
T PRK13362 52 AVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYV 131 (306)
T ss_pred HHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999766 69999999999999999999888888876544 46555444422233356
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD 158 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D 158 (252)
..||. ++||+++.++++.++.++.++.+|+. +..|. .+...+++....++|+...+..++++|+|||
T Consensus 132 ~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~-----a~~g~---~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy 198 (306)
T PRK13362 132 GVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYC-----AVTGQ---FDAGALILLLMFSLWQMPHSYAIAIFRFNDY 198 (306)
T ss_pred HHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 78984 38999999999888776666556654 23332 3555666677788999999999999999999
Q ss_pred HhcCcccchhhhchHHHHHHHH
Q 047278 159 RKFDIQTLSVIVGRERVFWLCV 180 (252)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~l~~ 180 (252)
+++|+||+|+++|+|++++...
T Consensus 199 ~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 199 AAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHCCCeeeceecChHHHHHHHH
Confidence 9999999999999998887544
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3.2e-29 Score=220.54 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcC---------C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCH----HHH
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVN---------K--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSP----PLL 68 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n---------~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~----~~~ 68 (252)
+++.++..++|++||++|+|.|++| + ++||+++|++|++|+..+..++.++++.++..++.. .+.
T Consensus 48 l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~ 127 (297)
T PRK12871 48 LIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFV 127 (297)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778999999999999865 2 589999999999999999998888888887665532 222
Q ss_pred HHHHHHHHHHHHhcCCccccccccCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH
Q 047278 69 LALIIWFLLGSAYSIQLPFLRWKGHPFLA--PFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFAN 146 (252)
Q Consensus 69 ~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~--~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
++ +.+.++++.|+. .||.+..+ +++.+..++.++..+ + ...|. .+...+....+.++|+.++
T Consensus 128 l~-~~~~~~~~~Y~~------~kr~~~~p~~~l~G~~~~~~~~~~g-~-----~~~g~---~~~~~~ll~~~~~~w~~~~ 191 (297)
T PRK12871 128 IM-LYSYGIEAFYQV------KKRNQKYPVAQLLGRTDFTLFPAAG-Y-----LCYGQ---PDMTALLYMVFFYPWTMAH 191 (297)
T ss_pred HH-HHHHHHHHHHhc------ccccccccHHHHHHHHHHHHHHHHH-H-----HHhCC---CcHHHHHHHHHHHHHHHHH
Confidence 22 455566778884 24443333 333333333322222 1 22332 3445555556778899999
Q ss_pred HHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 047278 147 GLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDL 226 (252)
Q Consensus 147 ~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~ 226 (252)
+++||++|+|||++.|+||+|+++|+++++++...+..+.... ..+...+.++.+.. ....+.+.++.+|.+..+.
T Consensus 192 ~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~--~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 267 (297)
T PRK12871 192 LGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA--AIFFLRELGPIALY--GFLAGFVLLAGANLYLWKE 267 (297)
T ss_pred HHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998887655544444432 23445566643221 2234566788999999999
Q ss_pred CchHHHHHHHHH
Q 047278 227 SSNASTLSFYMF 238 (252)
Q Consensus 227 ~~~~~~~~f~~~ 238 (252)
+|+++|.+-|..
T Consensus 268 ~~~~~~~~~f~~ 279 (297)
T PRK12871 268 KSQDAGMKILPL 279 (297)
T ss_pred CCHHHHHHHHHH
Confidence 999999888763
No 36
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.97 E-value=5.1e-29 Score=214.67 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=157.4
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhc--CCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKV--NKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++.++++.++|..||+.|+|+|+. |+|+||+++|+++++++...+..+.++++.+++..++..+.+. ....+.++.
T Consensus 29 ~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~ 107 (257)
T PF01040_consen 29 LLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLGFLLGLL 107 (257)
T ss_pred HHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHH
Confidence 4567799999999999999999999 7799999999999999999888999999988888787666665 455556789
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK 160 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~ 160 (252)
|| ||+|+||+++.++++.++.++.....+++. .++. .+.+.........++.......+|++|+|+|++
T Consensus 108 Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~ 176 (257)
T PF01040_consen 108 YS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRK 176 (257)
T ss_pred Hh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99 788999999999999988776544444432 2221 233444444444566777778889999999999
Q ss_pred cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278 161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238 (252)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (252)
.|+||+|+++|+++++. ..+....+.. .........++.. .......+..+....+..+.++++++++++++
T Consensus 177 ~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 248 (257)
T PF01040_consen 177 AGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFSPWPL---IIALLLAALALIFILWFFRKRDPKKPERLFFF 248 (257)
T ss_pred cCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999999887 1111111111 0111111112211 12334455667777888888888888888844
No 37
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=5.2e-29 Score=218.77 Aligned_cols=191 Identities=25% Similarity=0.314 Sum_probs=141.1
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~~ 80 (252)
+++++++.+.++|++||+.|+|+|++|+|+||.++++...+.+..+..+...+++.+... .++....+. +.+.+.++.
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 119 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGIL 119 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHH
Confidence 467899999999999999999999999999999866555555444444445555544333 355555554 456667899
Q ss_pred hcCCcccc-ccccCCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278 81 YSIQLPFL-RWKGHPFLAPFSMMILMGLVYQL-LFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD 158 (252)
Q Consensus 81 Ys~~~pp~-rlKr~~~~~~~~~~~~~g~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D 158 (252)
|| .||. |+||.|.++|++++..+|..+.. +++. .+. ..+...+...+..+++.+..+.++|++|+|+|
T Consensus 120 Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~------~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D 189 (285)
T PRK12872 120 YS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY------YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGD 189 (285)
T ss_pred Hh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh------ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhH
Confidence 99 4555 58999999999999888854333 3321 111 12344444445566778899999999999999
Q ss_pred HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278 159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK 203 (252)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 203 (252)
+++|+||+|+++|+|+++++...+..+.+...+........++.+
T Consensus 190 ~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (285)
T PRK12872 190 RKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL 234 (285)
T ss_pred HHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 999999999999999999999988888888777666665556544
No 38
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=212.48 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=145.5
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC----CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK----PDLPLASGDFSRGTGIAIALISSLTSLT----MGVMFRSPPLLLALII 73 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~----~~Rpl~sG~is~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~ 73 (252)
+++++++.|.++|.+|||+|.+.|+.++ ++|++++|.+|+|+++..+..+..++.. +.+..++..+.++ ++
T Consensus 44 ~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~ 122 (317)
T PRK13387 44 FMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LI 122 (317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HH
Confidence 4678899999999999999987665554 7899999999999999887776666665 5555565555555 67
Q ss_pred HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhccccccchHHH-------------------
Q 047278 74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLF-FIHIQKYMLARPVVITKPLV------------------- 133 (252)
Q Consensus 74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~-~~~~~~~~~g~~~~~~~~~~------------------- 133 (252)
+.+.++.|| .||+++||++ +||+.+++.+|.....+. +.. + + ..++..+
T Consensus 123 g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~--t---~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (317)
T PRK13387 123 CFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYIN--T---N---TITIESLLFQGEMFTIQGNLIAIIAI 191 (317)
T ss_pred HHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHHHh--c---C---CCchHHHHhcccchhhcchhHHHHHH
Confidence 778899999 7999999999 599998888885443433 221 1 1 1121111
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278 134 -FATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK 203 (252)
Q Consensus 134 -~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 203 (252)
+..+...+.+...+.+||++|+|+|+++|+||+|+++|+|++.++...+...+|+..+.......+|+.+
T Consensus 192 ~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~ 262 (317)
T PRK13387 192 GVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA 262 (317)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1344556667788999999999999999999999999999999999999999998877666666667654
No 39
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=5.7e-27 Score=205.08 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=145.3
Q ss_pred ccHHHHHHHHHHHHhhhhcchhh--hhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHH----HHHhcC-----HHH-
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEI--DKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTM----GVMFRS-----PPL- 67 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~--D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l----~~~~~~-----~~~- 67 (252)
++++++++|.++|.+|||+|.+. |+.++ |+|++++|.+|++++...+..+..++..+ .+..++ +.+
T Consensus 33 ~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l 112 (284)
T TIGR00751 33 ALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFI 112 (284)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHH
Confidence 46889999999999999999853 65433 88999999999999998876666655444 333343 133
Q ss_pred HHHHHHHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Q 047278 68 LLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANG 147 (252)
Q Consensus 68 ~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (252)
.++ +.+++.++.|| .||+|+|++++ ||+.+++.+|.+...|.+. ++.+ ..++..++..+...+.+..+.
T Consensus 113 ~lg-~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~y-----vq~~--~~~~~~ll~sl~~g~l~~~il 181 (284)
T TIGR00751 113 ALG-ALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQY-----LQAH--RVDWVGILPAVATGLLACAVL 181 (284)
T ss_pred HHH-HHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 333 56777889999 79999999997 8999988888554454332 1111 245555555555677788999
Q ss_pred HhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 047278 148 LLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLS 202 (252)
Q Consensus 148 ~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~ 202 (252)
.+||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+.......+|+.
T Consensus 182 ~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~ 236 (284)
T TIGR00751 182 NINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW 236 (284)
T ss_pred HHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 9999999999999999999999999999999999998888877666665566653
No 40
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.96 E-value=1.3e-27 Score=208.70 Aligned_cols=183 Identities=24% Similarity=0.225 Sum_probs=135.4
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY 81 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y 81 (252)
..+.+.+...++|++||++|+|+|++|+|+||.+ +++.+..++.+..++|+.+++..|++ .++ +++.+.++.|
T Consensus 63 ~~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~-ll~~l~g~lY 135 (307)
T PRK13591 63 TCIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLA-FLPFITGYLY 135 (307)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-HHHHHHHHHh
Confidence 3467788899999999999999999999999986 88899999999999999999887743 233 4666778999
Q ss_pred cCC----ccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278 82 SIQ----LPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG 157 (252)
Q Consensus 82 s~~----~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~ 157 (252)
|.+ ..|+|+|+.+.++|++++..+|.....+ .+.. .+ . ..+.....++...-.++++.+||++|+|+
T Consensus 136 S~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~g~~-~~---~-~~~~~~i~l~~~~~l~~~~iindirDiEG 206 (307)
T PRK13591 136 SKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----AGSY-CG---S-LIPVGLIFLFFGVKLFINSCVYDFKDVKG 206 (307)
T ss_pred cCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----HHhh-hh---h-HHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 953 2245899999999999998888532111 0111 11 0 11111111111222356778999999999
Q ss_pred hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047278 158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFP 200 (252)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 200 (252)
|++.|+||+|+++|+++++++...+..++++..+.......++
T Consensus 207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~ 249 (307)
T PRK13591 207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA 249 (307)
T ss_pred HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888888887766555554444
No 41
>PLN02776 prenyltransferase
Probab=99.96 E-value=8.1e-27 Score=207.07 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=154.1
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTM-GVMFRSPPLLLALIIWFLLG 78 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~~~l~ 78 (252)
++++++++++++|++||++|+|+|++|+ ++||+|+|++|+++|+.+++++.++++.+ .+..|+.+..++....++..
T Consensus 34 ~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~ 113 (341)
T PLN02776 34 TCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYA 113 (341)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999977 79999999999999999999988888855 45567777766633233345
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMG-LVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG 157 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g-~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~ 157 (252)
..||. +||+++++ .++|.+.| +++.+||. ++.|. +++..+++....++|+...+....++|+||
T Consensus 114 ~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~-----Avtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD 178 (341)
T PLN02776 114 FVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWA-----AASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDD 178 (341)
T ss_pred HHHHh------HccCCchh-HHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 68995 79999876 46666656 55555553 34442 456667777778899997777778888899
Q ss_pred hHhcCcccchhhh--chHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHH
Q 047278 158 DRKFDIQTLSVIV--GRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSF 235 (252)
Q Consensus 158 D~~~G~~Tl~v~~--G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f 235 (252)
|+++|++++|+.- |+++++.+....+.+..+.++..+... .++.| ...+..+....+.++++..+.+|.+..++.
T Consensus 179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~~~--~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~ 255 (341)
T PLN02776 179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSSPF--ALEAALLTAYLAASAASFYREPTNANARKM 255 (341)
T ss_pred HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999965 566566555444433333332222222 22222 133455555678888888877777666554
Q ss_pred HH
Q 047278 236 YM 237 (252)
Q Consensus 236 ~~ 237 (252)
|.
T Consensus 256 F~ 257 (341)
T PLN02776 256 FH 257 (341)
T ss_pred HH
Confidence 44
No 42
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=2.8e-26 Score=199.92 Aligned_cols=179 Identities=20% Similarity=0.195 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHh----hhhcchhhhhcCCCCCccccCccCHHHHHHHH----HHHHH-HHHHHHHHhcCHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTL----NQLYDVEIDKVNKPDLPLASGDFSRGTGIAIA----LISSL-TSLTMGVMFRSPPLLLALII 73 (252)
Q Consensus 3 l~~~~l~~~~~~~~----Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~----~~~~~-l~l~l~~~~~~~~~~~~~~~ 73 (252)
++.+++++...|.. |||+|+|.|+.|++++.. .|.+|++|..... .+... .++.+....+++.+.++ .+
T Consensus 36 l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ 113 (282)
T PRK13105 36 VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AV 113 (282)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HH
Confidence 44566666666555 999999999999855443 5889999884433 22222 22223332244344444 57
Q ss_pred HHHHHHHhcCCccccccccCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278 74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMIL-MGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV 152 (252)
Q Consensus 74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~-~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (252)
+++.++.|| .||.|+|++++.++++..+. +|. ...|.+ .. ++ ..++..++....+.+|+.+++++||+
T Consensus 114 ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~-----~~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~i 182 (282)
T PRK13105 114 SVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSP-ALYGLV-----LA-GA--PFTAALWAVLAAFFLWGMASHAFGAV 182 (282)
T ss_pred HHHHHHHhc--CCCccccccchHHHHHHHHHHHHH-HHHHHH-----Hh-hc--cccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 778889999 69999999999888654332 222 222321 22 22 23445556666778899999999999
Q ss_pred CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 047278 153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVG 194 (252)
Q Consensus 153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g 194 (252)
||+|+||+.|+||+|+++|+|++.+++..++.+++++.+..+
T Consensus 183 rDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 183 QDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred cchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887776444
No 43
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=3.3e-25 Score=194.07 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=139.3
Q ss_pred ccHHHHHHHHHHHHhhhhcchhh--hhcCC--CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEI--DKVNK--PDLPLASGDFSRGTGIAIALISSLTSLT----MGVMFRSPPLLLALII 73 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~--D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~ 73 (252)
+++++++.|.++|.+|||+|.+. |+.+. +.|.. .++++......++..++.. +.+..+++.+.++ ..
T Consensus 40 ~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~----~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~ 114 (285)
T TIGR02235 40 FLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT----GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GL 114 (285)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HH
Confidence 46899999999999999999864 77432 33333 4567776665555444443 3344453334444 56
Q ss_pred HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCC
Q 047278 74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVP 153 (252)
Q Consensus 74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (252)
+++.++.|| .||+++|++++ |++.+++.+|.....+.+. ++.+ .+++..+...+...+.+.....+||++
T Consensus 115 g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-----vqt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~r 184 (285)
T TIGR02235 115 CCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAALY-----AQSQ--SFSLIPWKASILVGLATTLILFCSHFH 184 (285)
T ss_pred HHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHHH-----HhCC--cCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 778899999 79999999998 9999988888544444321 1111 356666666667778888999999999
Q ss_pred CchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278 154 DVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK 203 (252)
Q Consensus 154 D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 203 (252)
|+|+|+++|+||+|+++|+|++.++...+...+|+..+........|+..
T Consensus 185 D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ 234 (285)
T TIGR02235 185 QVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT 234 (285)
T ss_pred cchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999998877777666666643
No 44
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=193.91 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---
Q 047278 5 PAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY--- 81 (252)
Q Consensus 5 ~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y--- 81 (252)
..++..++++++||++|+|+||+|+|+||+|||++|++++..++.++.++++.++... ... +...+..+.|
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~~lY~~l 127 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFLYIYGTL 127 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999999988877777666543 112 1233345566
Q ss_pred --cCCccccccccCCCchhHHHHHHHHHHHHH--HHHHH-HHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCch
Q 047278 82 --SIQLPFLRWKGHPFLAPFSMMILMGLVYQL--LFFIH-IQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVD 156 (252)
Q Consensus 82 --s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~--g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~ 156 (252)
+. ++||.++.+|+.++...|.++.. +++.. .+....|.+ ......+.+.+..++.+.++|+.+|++| |
T Consensus 128 m~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~ 200 (299)
T PRK13592 128 MSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-P 200 (299)
T ss_pred HHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-C
Confidence 64 48999999999998776643322 22211 011122211 1111112333344556789999999999 8
Q ss_pred hhHhcCcccchhhhchHHHHHHHHHHHHHHHHH
Q 047278 157 GDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGA 189 (252)
Q Consensus 157 ~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~ 189 (252)
||++. .+|+|+++|.|++.+++..+..+..+.
T Consensus 201 gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 201 KDETE-YVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred ccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence 88865 999999999999999988776655543
No 45
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.94 E-value=1.2e-24 Score=191.96 Aligned_cols=189 Identities=16% Similarity=0.093 Sum_probs=142.5
Q ss_pred ccHHHHHHHHHHHHhhhhcchh--hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVE--IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM----GVMFRSPPLLLALIIWF 75 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l----~~~~~~~~~~~~~~~~~ 75 (252)
++++++++|.++|.+|||+|++ .|+. +++ ...++..++++.......+.+++..+ .+..+++.+.++ ++++
T Consensus 53 ~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~ 129 (304)
T PRK07419 53 FLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCC 129 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHH
Confidence 4689999999999999999987 6774 222 23355557888887766665555543 344454444444 5677
Q ss_pred HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278 76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV 155 (252)
Q Consensus 76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~ 155 (252)
+.+++|| .||+|+|++++ |++.+++.+|.....+.+. +..+ .+++..+...+...+.+.....+||++|+
T Consensus 130 ~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-----v~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~ 199 (304)
T PRK07419 130 FLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALY-----SQTP--SWSLIPLAASIILGLATSLILFCSHFHQV 199 (304)
T ss_pred HHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 8899999 79999999997 9999988888554444331 1111 24555666666677888899999999999
Q ss_pred hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278 156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK 203 (252)
Q Consensus 156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 203 (252)
|+|+++|+||+|+++|+|+++++...+...+|+..+.......+|+..
T Consensus 200 e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~ 247 (304)
T PRK07419 200 EDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT 247 (304)
T ss_pred hhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999998877777766666643
No 46
>PLN02922 prenyltransferase
Probab=99.94 E-value=3.6e-24 Score=189.83 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=140.8
Q ss_pred ccHHHHHHHHHHHHhhhhcchh--hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVE--IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM-----FRSPPLLLALIIW 74 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-----~~~~~~~~~~~~~ 74 (252)
+++++++.|.++|.+|||+|.+ .|+.++..+.-..| |+++.+.....+.+++....+. .+++.+.++ +.+
T Consensus 56 ~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g 132 (315)
T PLN02922 56 LLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAA 132 (315)
T ss_pred HHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHH
Confidence 4789999999999999999976 57654322122234 9999988776666555532221 133334444 678
Q ss_pred HHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchHHHHHHHHHHHHHHHHHHhh
Q 047278 75 FLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARP----VVITKPLVFATAFMCVLSFANGLLK 150 (252)
Q Consensus 75 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (252)
++.+++|| .||+|+|++++ |++.+++.+|.....+.+.. ++...+.. .+.++..++..+...+++.....+|
T Consensus 133 ~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~N 208 (315)
T PLN02922 133 ILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCS 208 (315)
T ss_pred HHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHc
Confidence 88899999 79999999998 89988888885544554321 11111100 0134455566677788899999999
Q ss_pred cCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 047278 151 DVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLS 202 (252)
Q Consensus 151 ~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~ 202 (252)
|++|+|+|+++|+||+|+++|+|+++++...+...+|+..+........|+.
T Consensus 209 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~ 260 (315)
T PLN02922 209 HFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLP 260 (315)
T ss_pred cCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999888777777666653
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=8.3e-24 Score=184.79 Aligned_cols=169 Identities=20% Similarity=0.334 Sum_probs=108.8
Q ss_pred HHHHHHHhhhhcchhhhhcCCCCCc---cccCccCHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 047278 9 MNIYVVTLNQLYDVEIDKVNKPDLP---LASGDFSRGTGIAI-ALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQ 84 (252)
Q Consensus 9 ~~~~~~~~Nd~~D~~~D~~n~~~Rp---l~sG~is~~~a~~~-~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~~ 84 (252)
.|.+.|++||++|+|+||.|+++|. ++ .+.+.+... ......+++.+....++...... +..++..+.||
T Consensus 57 ~Nl~~y~iND~~D~D~Dr~~prk~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS-- 130 (282)
T PRK12875 57 ANVFLYGVNDVFDADTDELNPKKDREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYS-- 130 (282)
T ss_pred HHHHHhcchhhhhhhccccCCCccCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHc--
Confidence 3456677899999999999986543 33 111222111 22233334433333333222222 45567889999
Q ss_pred ccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCcc
Q 047278 85 LPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQ 164 (252)
Q Consensus 85 ~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~~ 164 (252)
.||+|+|++|+.+..+.+... .++..+++ ...| +.++..+ .+..++|+.+++++|++||+|+|+++|+|
T Consensus 131 ~pP~rlk~~p~~~~~~~g~~~-~~~~~~y~-----~~tg---~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~ 199 (282)
T PRK12875 131 APPLRFKTTPVLDSLSNGLYI-LPGVAAYA-----LVSG---SLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIR 199 (282)
T ss_pred CCCccchhccHHHHHHHHHHH-HHHHHHHH-----HHcC---CCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCc
Confidence 799999999986544433211 12222222 1222 1343333 23356899999999999999999999999
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 047278 165 TLSVIVGRERVFWLCVSMMLTAYGAAILVG 194 (252)
Q Consensus 165 Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g 194 (252)
|+|+++|+|++++++..++.++..+.+..+
T Consensus 200 Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 200 TTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred cchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888777766655
No 48
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.91 E-value=1.9e-22 Score=174.72 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=141.2
Q ss_pred ccHHHHHHHHHHHHhhhhcchh--hhhc----CCCCCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVE--IDKV----NKPDLPLASGDFSRGTGIAIALISSLTSLTMGV----MFRSPPLLLAL 71 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~----n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~----~~~~~~~~~~~ 71 (252)
.++++++++..+|..|||.|.+ .|.+ .+.++.+.+.+++++..+...+.+...+..++. ..++.-+.++
T Consensus 49 ~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG- 127 (303)
T COG1575 49 ALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG- 127 (303)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Confidence 3689999999999999999976 5643 224556666677888887766555554444433 3344323334
Q ss_pred HHHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhh
Q 047278 72 IIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLL-FFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLK 150 (252)
Q Consensus 72 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (252)
.++++.++.|+ .+|+++++.|+ |++..++++|.....+ +|.. .+ ..++..++..+...+.+......|
T Consensus 128 ~l~~~~g~~YT--gGp~PlgY~gL-GEi~~~vffG~l~v~g~~yiq------t~--~~~~~~ll~slp~gil~~~Il~aN 196 (303)
T COG1575 128 LLCIAAGILYT--GGPFPLGYMGL-GEIFVGVFFGPLIVLGAYYIQ------TG--RLSWAILLPSLPVGILIANILLAN 196 (303)
T ss_pred HHHHHheeeec--cCCcCcccCCH-HHHHHHHHHHHHHHHHHHHHh------cc--cchHHHHHHHHHHHHHHHHHHHhc
Confidence 67888899999 68999999987 9999988888543333 3321 11 246666666667777788899999
Q ss_pred cCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278 151 DVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK 203 (252)
Q Consensus 151 ~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 203 (252)
+++|+|+|+|+|++|+|+++|+++++.+...++..+|++.++.......++..
T Consensus 197 NirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ 249 (303)
T COG1575 197 NLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG 249 (303)
T ss_pred ccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 99999999999999999999999999999999999988877666666666544
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.6e-23 Score=177.21 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=147.1
Q ss_pred ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Q 047278 2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMG-VMFRSPPLLLALIIWFLLG 78 (252)
Q Consensus 2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~l~ 78 (252)
+++|..+..+++|++|+++|||+|++++ ++||+++|+++++|++.++.++.++|+.+. +..|+..-.+.+..-+...
T Consensus 57 ~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv 136 (304)
T COG0109 57 TLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYV 136 (304)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999988 799999999999999999999999999888 5556555555533444567
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD 158 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D 158 (252)
.+||.+ +||++....++.++.+++++.+||. ++.|. .+...+++.+.+++|+-..--.-++.-+||-
T Consensus 137 ~vYT~~-----lKR~T~~NiviGg~aGa~PpliGwa-----Avtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY 203 (304)
T COG0109 137 VVYTLW-----LKRRTPQNIVIGGFAGAMPPLIGWA-----AVTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDY 203 (304)
T ss_pred hhhhhh-----ccCCcccceeeeeccccccccceee-----eeeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 899985 8999986544445554456666663 45553 4555555555566775432222233445666
Q ss_pred HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278 159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238 (252)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (252)
+++|+..+|+.-|++.+++-...-..+..............++.|.. .+.++-+..+++-.+...-+|++..++-|.+
T Consensus 204 ~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v--~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~ 281 (304)
T COG0109 204 KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLV--VATLLGAWFLALAWKLYRKDDRKWARKLFKY 281 (304)
T ss_pred HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 89999999999999988765322222222111222222223344422 2333333445555555444788888777764
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.77 E-value=6.5e-17 Score=142.04 Aligned_cols=98 Identities=27% Similarity=0.403 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcC--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVN--KPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++..++++++|++||++|+|+||+| ||+||++||++|++++..++.++..+++.+++..|+...... ...+++.+.
T Consensus 52 fl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~ 130 (295)
T PRK12324 52 FVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLA 130 (295)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34556788999999999999999998 489999999999999999999999999988888776555544 455667789
Q ss_pred hcCCccccccccCCCchhHHHHHHHH
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMG 106 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g 106 (252)
||. ++||++..++++++...+
T Consensus 131 Ys~-----~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 131 YSF-----KLKHQPVLDVFCIASGFV 151 (295)
T ss_pred hhH-----HhcCCchhhHHHHHHHHH
Confidence 996 489999999888866544
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.75 E-value=2.5e-16 Score=147.06 Aligned_cols=144 Identities=21% Similarity=0.270 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA 80 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
.++..++++++|++||+.|+|+||+|+ |+||++||++|+++|..++.+++.+++.+++.+|+...... +..+++..+
T Consensus 232 f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~ 310 (479)
T PRK08238 232 FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLA 310 (479)
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 456778999999999999999999995 89999999999999999999999999999888876444333 456667788
Q ss_pred hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278 81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK 160 (252)
Q Consensus 81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~ 160 (252)
||. ++||+++++++++++.++..+..|+ ...+ .+.+.+++. +..+......+.|...|.+.+++
T Consensus 311 Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~------~a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~ 374 (479)
T PRK08238 311 YSL-----RLKRKVLVDVLTLAALYTLRIIAGA------AAIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQ 374 (479)
T ss_pred hhH-----HhcCCccccchHHHHHHHHHHHHHH------HHhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHh
Confidence 995 4899999999999765543333332 2222 223333322 22233455667888888888877
Q ss_pred cCc
Q 047278 161 FDI 163 (252)
Q Consensus 161 ~G~ 163 (252)
.|.
T Consensus 375 ~~~ 377 (479)
T PRK08238 375 RGK 377 (479)
T ss_pred cCC
Confidence 775
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.16 E-value=4.4e-11 Score=103.81 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHH
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGS 79 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~ 79 (252)
-+|+.+..+++|++||+++...|++++ ++||+++|++|+.+|+.++.+....|..+... .|+..-.++..--++...
T Consensus 133 tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~ 212 (409)
T KOG1380|consen 133 TVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAG 212 (409)
T ss_pred hhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeec
Confidence 467888999999999999999999987 89999999999999999998888888766655 455444444222234466
Q ss_pred HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH--HHHHhhcCCCchh
Q 047278 80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSF--ANGLLKDVPDVDG 157 (252)
Q Consensus 80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~D~~~ 157 (252)
+|+- +||.......+.++++.+++.+||- +..|. .++..+++......|.+ ...+-.+++ +|
T Consensus 213 vYTP------lKrihiinTWvGavVGAIPPLMGwA-----Aasg~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~D 276 (409)
T KOG1380|consen 213 VYTP------LKRIHIINTWVGAVVGAIPPLMGWA-----AASGL---LDPGAMILAGILYAWQFPHFNALSWNLR--ND 276 (409)
T ss_pred cccc------hhhhhhhhhHHHHHhccCCccchhh-----hhccC---CCccHHHHHHHHHHhcccchhhhhhhhc--hh
Confidence 7873 8998764444444443355556663 22232 23344444444445654 333444443 45
Q ss_pred hHhcCcccchhhh---chHHHHHHHHHHHHHHH
Q 047278 158 DRKFDIQTLSVIV---GRERVFWLCVSMMLTAY 187 (252)
Q Consensus 158 D~~~G~~Tl~v~~---G~~~~~~l~~~l~~~~~ 187 (252)
..+.|.+.+++.- -++.+.+.+..++.++|
T Consensus 277 Ys~~GY~Mma~~np~l~rr~alr~s~a~~~L~~ 309 (409)
T KOG1380|consen 277 YSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY 309 (409)
T ss_pred hhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence 6899999999864 23445555555555554
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=98.76 E-value=1.6e-09 Score=90.18 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhhhcch--hhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHH---HHHhcCH---HHHHHHHHHHHHH
Q 047278 7 VLMNIYVVTLNQLYDV--EIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM---GVMFRSP---PLLLALIIWFLLG 78 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l---~~~~~~~---~~~~~~~~~~~l~ 78 (252)
+..+.++|.+|.|+|. .+|++...+|.++..-+.+.+...+..++...+-.. ...+++. -+.+.-..++--.
T Consensus 109 lavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~s 188 (359)
T KOG4581|consen 109 LAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGS 188 (359)
T ss_pred eeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccc
Confidence 3457788999999995 588887789999998888888877776665544332 2223321 1111112233345
Q ss_pred HHhcCCccccccccCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278 79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLV-YQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG 157 (252)
Q Consensus 79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~ 157 (252)
+.|+.+ +.+|.... +.+++.+.+|.+ +..++.. -.|. +.+..+-..+...+-+-++..-|+.+|.|.
T Consensus 189 flytgg---igfkyial-gdliili~fgpiavlfaf~~-----q~g~---l~~~~l~yaiplalnteailhsnntrd~dn 256 (359)
T KOG4581|consen 189 FLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAFAI-----QTGH---LAIFPLGYAIPLALNTEAILHSNNTRDADN 256 (359)
T ss_pred eeEecc---cceEEEec-cCEEEEEeechHHHHHHHHH-----hcCc---eeEEeehheeeeccchHHHhccCCCccccc
Confidence 678853 45777665 555544444521 1222211 1121 111111111122233446667899999999
Q ss_pred hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047278 158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFP 200 (252)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 200 (252)
||++|+-|+++.+|+..+-.++..++.+.|.+..+.+.-.+..
T Consensus 257 dr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~ 299 (359)
T KOG4581|consen 257 DREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSIS 299 (359)
T ss_pred ccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888998877777655543
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=94.95 E-value=0.081 Score=46.73 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhcchhhhhcCCCCCcc
Q 047278 5 PAVLMNIYVVTLNQLYDVEIDKVNKPDLPL 34 (252)
Q Consensus 5 ~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl 34 (252)
.+.+..+.++..|++.|.|+|++|.|+.+.
T Consensus 184 p~gil~~~Il~aNNirDie~D~~~gk~TLa 213 (303)
T COG1575 184 PVGILIANILLANNLRDIEEDIRNGKYTLA 213 (303)
T ss_pred HHHHHHHHHHHhcccccchhHHhcCCccee
Confidence 455667788889999999999999865543
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.60 E-value=0.32 Score=43.28 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=37.2
Q ss_pred HhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcC
Q 047278 15 TLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR-----SPPLLLALIIWFLLGSAYSI 83 (252)
Q Consensus 15 ~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~-----~~~~~~~~~~~~~l~~~Ys~ 83 (252)
.+||+.|.|.|+++. +.-|+.=|+=..+.......+...+...+....+ +.....+++.++...+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999986 5666655633222222211111112222222222 33344455666777788985
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.60 E-value=0.64 Score=40.65 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
++.....+.+||+.|+|.|+++. +.-|..-|+
T Consensus 171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 34556666889999999999876 666776665
No 57
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=92.54 E-value=2 Score=37.82 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHH
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLT 57 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~ 57 (252)
++..+...+...+||+.|+|.|++.. +.-|.. +.++.+..+...+..++..
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHH
Confidence 45556667778899999999999865 554543 3455555554444444433
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.83 E-value=0.91 Score=40.38 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhcchhhhhcCCC
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNKP 30 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~~ 30 (252)
+........||+.|+|.||++.+
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk 207 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGK 207 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCC
Confidence 44567778999999999999874
No 59
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.50 E-value=0.81 Score=40.95 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhcchhhhhcCCC-CCccccCccCHHHHHHH
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNKP-DLPLASGDFSRGTGIAI 47 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~ 47 (252)
.+........||+.|+|.|+.+.+ +-|..=| ++.+...
T Consensus 199 g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l 237 (317)
T PRK13387 199 IFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVL 237 (317)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHH
Confidence 344566678999999999999864 3344334 4444443
No 60
>PLN02922 prenyltransferase
Probab=90.68 E-value=1 Score=40.21 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhcchhhhhcCCCC
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNKPD 31 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~~~ 31 (252)
.+.....+..||+.|+|.|+++.++
T Consensus 198 gll~~~iL~~Nn~rD~e~D~~~Gk~ 222 (315)
T PLN02922 198 GLTTTLILFCSHFHQIDGDRAVGKM 222 (315)
T ss_pred HHHHHHHHHHccCcchhhHHHcCcc
Confidence 3556677889999999999998743
No 61
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=90.50 E-value=1.7 Score=38.06 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccC
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFS 40 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is 40 (252)
.++-+..-..+|++.|+|.|++.. |.-|..-|+-+
T Consensus 169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 204 (281)
T TIGR01474 169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence 344455556789999999999876 77787777533
No 62
>PRK13592 ubiA prenyltransferase; Provisional
Probab=90.41 E-value=2.7 Score=37.19 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCcccchhhh---chHHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIV---GRERVFWLCVSM 182 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~---G~~~~~~l~~~l 182 (252)
.++.+.+-.++||+.|+|-|+.+ ++.=|+-= .+|.++..+..+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence 33445677899999999999665 55555533 345555544333
No 63
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=89.96 E-value=4 Score=35.80 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCc-ccchhhhch
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDI-QTLSVIVGR 172 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G~ 172 (252)
.++...+...+||+.|+|-|+++-. |.=|.-=|+
T Consensus 56 ~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3445567789999999999998866 355555554
No 64
>PLN00012 chlorophyll synthetase; Provisional
Probab=89.94 E-value=1.8 Score=39.64 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
+...+....||+.|+|.|++.. +.-|..-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 4556677899999999999875 777776664
No 65
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=89.85 E-value=1.9 Score=37.95 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR 63 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~ 63 (252)
+...+...+||+.|.|.||++. +.-|. ++.++.+..+...+..++.......+
T Consensus 171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 171 LWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777899999999999875 44343 45567777766666555554443333
No 66
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=89.63 E-value=2 Score=37.50 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCcccchhhhch
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGR 172 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~ 172 (252)
..+...+-..+||+.|+|.|++. +++=|..-|+
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 33445566789999999999988 6777777674
No 67
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.63 E-value=2 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
.++.+..-...|++.|+|.|+++. |.-|..-|+-
T Consensus 174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~ 208 (285)
T PRK12847 174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence 344455555789999999999876 7777766653
No 68
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=89.32 E-value=1.5 Score=38.36 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
++-+..-..+||..|+|.|++.. |.-|+.-|+
T Consensus 168 ~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 168 GFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 34445556799999999998766 777777773
No 69
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=89.30 E-value=1.8 Score=38.50 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHH
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRG 42 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~ 42 (252)
++-+..-.++|+..|+|.|++.. +.-|+.=|+-+.+
T Consensus 187 ~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~ 223 (300)
T PRK13106 187 ILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALT 223 (300)
T ss_pred HHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHH
Confidence 34444455789999999998876 7777766744333
No 70
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=88.77 E-value=2.2 Score=37.52 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhcchhhhhcCCC-CCccccCccCHHHHHHH
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNKP-DLPLASGDFSRGTGIAI 47 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~ 47 (252)
+........||+.|+|.|+++.+ .-|. ++.++.+...
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l 209 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKI 209 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHH
Confidence 45667778999999999999864 3343 3334555443
No 71
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=88.47 E-value=2.4 Score=37.85 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=22.3
Q ss_pred HHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 10 NIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 10 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
..+....||+.|+|.||++. |.-|+.-|+
T Consensus 202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 44557899999999999875 666776664
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=88.30 E-value=2.4 Score=37.19 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccC
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASG 37 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG 37 (252)
..+........||+.|+|.||++. +.-|.-=|
T Consensus 177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG 209 (293)
T PRK06080 177 CGLLIGAVLLANNIRDIETDRENGKNTLAVRLG 209 (293)
T ss_pred HHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC
Confidence 344566677899999999999876 44444334
No 73
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.89 E-value=2.8 Score=37.80 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 5 PAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 5 ~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
...+...+...+||+.|+|.|++.. +.-|+.=|+
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 3445566677799999999999875 666665553
No 74
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=87.76 E-value=3.3 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
+...+....||+.|+|.|+++. +.-|..-|+
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~ 225 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI 225 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence 4555666899999999999875 555654553
No 75
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=87.36 E-value=3.3 Score=36.23 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 9 MNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 9 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
...+....||+.|+|.|+++. +.-|..-|+
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 344567899999999999875 555665554
No 76
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=87.32 E-value=2.8 Score=37.10 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
++-+..-...||+.|+|.|+++. |.-|+.-|+-
T Consensus 185 ~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 185 YPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 34455667899999999999876 7778777754
No 77
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=87.18 E-value=2.8 Score=36.53 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
++........||+.|+|.|+++. |.-|+.-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 33444555779999999999876 777776664
No 78
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=86.84 E-value=5.9 Score=33.48 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCCchhhHhc-CcccchhhhchH
Q 047278 141 VLSFANGLLKDVPDVDGDRKF-DIQTLSVIVGRE 173 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~~D~~~-G~~Tl~v~~G~~ 173 (252)
+.....+.+||+.|.|.|+.. +++.-|..-|+-
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i 67 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI 67 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence 445567889999999999996 345555655544
No 79
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=86.74 E-value=5.1 Score=35.07 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
++-+..-...|++.|+|.|+++. |.-|+.-|+=
T Consensus 172 ~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 205 (282)
T PRK12848 172 ILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY 205 (282)
T ss_pred HHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence 33444555778999999999876 7777766654
No 80
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=85.83 E-value=3.6 Score=36.45 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCchhhHhc-Ccccchhh---hchHHHHHHHHHH
Q 047278 142 LSFANGLLKDVPDVDGDRKF-DIQTLSVI---VGRERVFWLCVSM 182 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~D~~~-G~~Tl~v~---~G~~~~~~l~~~l 182 (252)
...+...+||+.|+|.|++. .+|.=|.. ...+.+..+...+
T Consensus 58 ~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l 102 (295)
T PRK12324 58 ASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL 102 (295)
T ss_pred HHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence 34566789999999999986 23333333 3444444444333
No 81
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=85.76 E-value=6.3 Score=34.39 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCcccchhhhc---hHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVG---RERVFWLCVS 181 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G---~~~~~~l~~~ 181 (252)
..+...+-..+||+.|+|.|++.. ++=|..=| ++.+..+...
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~ 90 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSIT 90 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHH
Confidence 334456678999999999999764 44454444 4444444433
No 82
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.59 E-value=11 Score=33.48 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.6
Q ss_pred HhhcCCCchhhHhcCcccchhhhch
Q 047278 148 LLKDVPDVDGDRKFDIQTLSVIVGR 172 (252)
Q Consensus 148 ~i~~~~D~~~D~~~G~~Tl~v~~G~ 172 (252)
.+||+.|+|-|+.+ +++-|+.=|+
T Consensus 71 ~iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 71 GLNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HHhhhhhHHHHhcC-CCCCCcCCcc
Confidence 39999999999864 5777765554
No 83
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.22 E-value=6.8 Score=34.45 Aligned_cols=32 Identities=19% Similarity=0.038 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
.+-+..-..+|++.|+|.|++.. |.-|..-|+
T Consensus 169 ~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 169 GLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34455667899999999999876 777776664
No 84
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=84.83 E-value=3.9 Score=35.63 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 9 MNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 9 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
...+-..+||+.|+|.|+++. |.-|..-|+
T Consensus 169 ~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 169 ATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 344556789999999999876 766765554
No 85
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=84.69 E-value=12 Score=32.94 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCCCchhhHhcCc-ccchhhhch
Q 047278 140 CVLSFANGLLKDVPDVDGDRKFDI-QTLSVIVGR 172 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G~ 172 (252)
.+...+-..+||+.|+|-|++..+ |+=|..=|+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 344556678999999999998654 456666665
No 86
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.59 E-value=6.1 Score=34.83 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHH
Q 047278 5 PAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRG 42 (252)
Q Consensus 5 ~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~ 42 (252)
+.++-+..-..+|++.|+|.|++.. |.-|+.-|+-+..
T Consensus 174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~ 212 (290)
T PRK12870 174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence 3444556666799999999999876 7777766654433
No 87
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=84.52 E-value=4.6 Score=35.54 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhcchhhhhcCCCC-CccccCccCHHHHHHH
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNKPD-LPLASGDFSRGTGIAI 47 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~is~~~a~~~ 47 (252)
+........||+.|+|.|+++.++ -|. ++.++.+..+
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l 212 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMY 212 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHH
Confidence 445677779999999999998643 333 3344555443
No 88
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=82.46 E-value=9.9 Score=33.52 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 10 NIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 10 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
+..-..+|++.|+|.|++.. |.-|+.-|+-
T Consensus 175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 33344688899999999766 7778777753
No 89
>PRK13595 ubiA prenyltransferase; Provisional
Probab=79.57 E-value=16 Score=32.30 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCCCchhhHhcCcc
Q 047278 142 LSFANGLLKDVPDVDGDRKFDIQ 164 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~D~~~G~~ 164 (252)
.......+||+-|+|.|+++-.+
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC
Confidence 34466789999999999866543
No 90
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=78.70 E-value=9.3 Score=33.74 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhcchhhhhcCCC-CCccccCccCHHHHH
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNKP-DLPLASGDFSRGTGI 45 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~ 45 (252)
+........||+.|+|.||++.+ .-|. ++.++.+.
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a~ 217 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGAA 217 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhHH
Confidence 33466778999999999998763 3333 44455553
No 91
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.22 E-value=15 Score=32.72 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
+++-+..-..++++.|+|.|++.. |.-|..-|+-
T Consensus 201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 235 (314)
T PRK12878 201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDH 235 (314)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchh
Confidence 334445555678999999999876 7777766753
No 92
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=77.73 E-value=14 Score=32.61 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
..+-+..-..+|++.|+|.|++.. |.-|..-|+
T Consensus 176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 344455556799999999998766 777777665
No 93
>PRK08238 hypothetical protein; Validated
Probab=72.91 E-value=16 Score=34.60 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCchhhHhcC-cccchhhhc---hHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVDGDRKFD-IQTLSVIVG---RERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~~D~~~G-~~Tl~v~~G---~~~~~~l~~~l~ 183 (252)
+...+..++||+-|+|.||+.- +|.=|..=| .+.+..+...+.
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~ 283 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLL 283 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4445677899999999999973 233344333 344444444333
No 94
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=70.71 E-value=21 Score=31.21 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCchhhHhcCc---ccchh-hhchHHHHHHH
Q 047278 140 CVLSFANGLLKDVPDVDGDRKFDI---QTLSV-IVGRERVFWLC 179 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~D~~~G~---~Tl~v-~~G~~~~~~l~ 179 (252)
.+...+-..+||+.|+|-|++..+ |.+|. +...+.+..+.
T Consensus 46 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (279)
T PRK12869 46 TLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVG 89 (279)
T ss_pred HHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHH
Confidence 344556689999999999998653 33333 34445554443
No 95
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=70.12 E-value=21 Score=31.04 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCchhhHhcCc-ccchhhhc---hHHHHHHHH
Q 047278 140 CVLSFANGLLKDVPDVDGDRKFDI-QTLSVIVG---RERVFWLCV 180 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G---~~~~~~l~~ 180 (252)
.+...+-..+||+.|+|-|++..+ ++=|..=| .+.+..+..
T Consensus 45 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 89 (280)
T TIGR01473 45 TLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGL 89 (280)
T ss_pred HHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHH
Confidence 344556689999999999997432 33343334 344444433
No 96
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=65.64 E-value=40 Score=29.68 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278 6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF 39 (252)
Q Consensus 6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 39 (252)
.++-...=.++.++.|+|.|++.. +.-|+-=|+-
T Consensus 168 ~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~ 202 (286)
T PRK12895 168 SSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIK 202 (286)
T ss_pred HHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCc
Confidence 334444445788899999999876 6666655543
No 97
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=63.20 E-value=87 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCchhhHhcCc-ccchh---hhchHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVDGDRKFDI-QTLSV---IVGRERVFWLC 179 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v---~~G~~~~~~l~ 179 (252)
+...+-..+||+.|+|-|++..+ ++=|+ +..++.+..+.
T Consensus 55 l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 97 (296)
T PRK04375 55 LVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG 97 (296)
T ss_pred HHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 34556679999999999998532 22333 33445554443
No 98
>PLN02878 homogentisate phytyltransferase
Probab=61.71 E-value=30 Score=30.48 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhcchhhhhcCC-CCCccccC
Q 047278 8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASG 37 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG 37 (252)
+.......+||+-|.|-||+.. +.-|+.=|
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG 197 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLG 197 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhC
Confidence 3344556899999999999876 66666444
No 99
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=60.25 E-value=1.2e+02 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=14.7
Q ss_pred HHHHHHhcCCcccc-ccccC-CCchhHHHH
Q 047278 75 FLLGSAYSIQLPFL-RWKGH-PFLAPFSMM 102 (252)
Q Consensus 75 ~~l~~~Ys~~~pp~-rlKr~-~~~~~~~~~ 102 (252)
+....+|.. .|+- +.|++ -..|.++.+
T Consensus 202 ~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aa 230 (303)
T COG1295 202 LGFFLLYRF-LPNVRVLKWRDVLPGALLAA 230 (303)
T ss_pred HHHHHHHHH-cCCccccchHHhhhhHHHHH
Confidence 345678887 7776 34443 334444433
No 100
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=59.45 E-value=42 Score=29.83 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhcCCCchhhHhcCc-ccchh---hhchHHHHHHHH
Q 047278 140 CVLSFANGLLKDVPDVDGDRKFDI-QTLSV---IVGRERVFWLCV 180 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v---~~G~~~~~~l~~ 180 (252)
.+...+-..+||+.|+|-|++..+ +.=|. ++..+.+..+..
T Consensus 57 ~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 57 SLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred HHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 344556789999999999987644 23343 334454544443
No 101
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=59.15 E-value=42 Score=29.86 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=21.3
Q ss_pred HHHHHHHhhcCCCchhhHhcCc-ccchhhhch
Q 047278 142 LSFANGLLKDVPDVDGDRKFDI-QTLSVIVGR 172 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G~ 172 (252)
.-.+-..+||+-|+|-|++.-+ ++=|..=|+
T Consensus 59 ~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 59 ARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3345578999999999988864 344443444
No 102
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=58.37 E-value=76 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.4
Q ss_pred HhhhhcchhhhhcCC-CCCccccCc
Q 047278 15 TLNQLYDVEIDKVNK-PDLPLASGD 38 (252)
Q Consensus 15 ~~Nd~~D~~~D~~n~-~~Rpl~sG~ 38 (252)
.+-.+.|+|.|++.. |.-|..-|+
T Consensus 188 ~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 188 TVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHhHhhHHHcCCcccchhcCh
Confidence 345567999999887 888877775
No 103
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=58.14 E-value=90 Score=28.90 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhcchh
Q 047278 8 LMNIYVVTLNQLYDVE 23 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~ 23 (252)
+++..-.++|++++.+
T Consensus 116 ~~~~ie~a~N~Iw~v~ 131 (412)
T PRK04214 116 LLHTIEQTFNRIWRVN 131 (412)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4455555788888754
No 104
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=54.11 E-value=13 Score=31.09 Aligned_cols=34 Identities=44% Similarity=0.498 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCchhhH----------hcCcccchhhhchHH
Q 047278 141 VLSFANGLLKDVPDVDGDR----------KFDIQTLSVIVGRER 174 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~~D~----------~~G~~Tl~v~~G~~~ 174 (252)
-...++.+.+|++|+.+|. +.|+.|+|.....+.
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~ 200 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARER 200 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHH
Confidence 3566788999999998888 899999999998443
No 105
>PLN02776 prenyltransferase
Probab=51.26 E-value=50 Score=29.94 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCc
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDI 163 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~ 163 (252)
..+...+-..+||+.|+|-|++..+
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~R 62 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKR 62 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCC
Confidence 3344556678999999999988554
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=50.62 E-value=20 Score=33.97 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH
Q 047278 4 VPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM 61 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~ 61 (252)
.+.+++..+.-.-+|++|+-+|+...+++++ +-+++..++..+++..++..
T Consensus 360 aaGL~l~iasavsHDiY~~vik~~ase~~~v-------~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 360 AAGLLLVIASAVSHDLYAMVIKKGATEKKEV-------RVARIAVVILGVVAILLGIL 410 (529)
T ss_pred HhhHHHHHHHHHHhHHHHHHhCCCCCcccee-------hhHHHHHHHHHHHHHHheec
Confidence 4556667777778899988777653233322 33444455555555555543
No 107
>PRK10581 geranyltranstransferase; Provisional
Probab=46.47 E-value=25 Score=31.19 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSM 182 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l 182 (252)
.--+..++.+..|+.|+. .|.+.|+.|+|+.+|.+.+...+.-.
T Consensus 212 g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~ 266 (299)
T PRK10581 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_pred HHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 344567888888888874 46778999999999998777665443
No 108
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=43.01 E-value=70 Score=24.06 Aligned_cols=64 Identities=8% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhc--------chhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 047278 4 VPAVLMNIYVVTLNQLY--------DVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPL 67 (252)
Q Consensus 4 ~~~~l~~~~~~~~Nd~~--------D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~ 67 (252)
+++..+.+.+|.+-|.. |+-.+|..-|.-.+...+...++......+.-.+++.++..+|..++
T Consensus 35 iStmAAAalGN~vSDv~Gi~~~~~vE~~~~rlg~~~P~Lt~~Q~~~~~~r~a~~~G~~~Gv~iGClLGM~PL 106 (111)
T PF10507_consen 35 ISTMAAAALGNLVSDVAGIGLGGYVERLAQRLGLKAPVLTPAQLNSRSTRWASNLGRAIGVTIGCLLGMFPL 106 (111)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666643 34344443333333334444444444455566667777666664443
No 109
>PLN02953 phosphatidate cytidylyltransferase
Probab=34.89 E-value=91 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=23.0
Q ss_pred hhhhhcCC-CCCccccCccCHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHH
Q 047278 22 VEIDKVNK-PDLPLASGDFSRGTGIAI-ALISSLTSLTMGVMFRSPPLLLA 70 (252)
Q Consensus 22 ~~~D~~n~-~~Rpl~sG~is~~~a~~~-~~~~~~l~l~l~~~~~~~~~~~~ 70 (252)
.|+|+.|+ |+.+-...+-+.-...+. ++++..+.+.+.+ .+.+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~RIiSglvl~~l~l~vV~-~GGw~F~~~ 126 (403)
T PLN02953 77 KEIDRIHDLQNVEDKQKKASQLKKRVIFGIGIGLPVGCVVL-AGGWFFTVA 126 (403)
T ss_pred chhhhhcccccccccccccccHHHHHHHHHHHHHHHHheee-eCcHHHHHH
Confidence 46787776 655554444443333333 3333333333333 365655544
No 110
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=33.91 E-value=2e+02 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=20.6
Q ss_pred hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHH
Q 047278 24 IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMG 59 (252)
Q Consensus 24 ~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~ 59 (252)
-|+.|+. |.+=+-+|..|....+.+..++++.++
T Consensus 8 p~RLN~e--PvV~rGlT~~El~~~a~~~~~~g~~~g 41 (121)
T PF11990_consen 8 PDRLNRE--PVVFRGLTADELGLAAGVGFVAGLVVG 41 (121)
T ss_pred hhhhcCC--CCeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 3666652 445556888888776655555544443
No 111
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.70 E-value=1.9e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=22.7
Q ss_pred hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHH
Q 047278 24 IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60 (252)
Q Consensus 24 ~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~ 60 (252)
-||.|+. |.+=+-+|..|.+..+.+..++++.++.
T Consensus 5 p~RLN~e--PvV~rGlT~~El~~~~~~~~~~gl~~g~ 39 (111)
T TIGR03750 5 PDRLNRE--PVVFRGLTADELGVAAGVGLAAGLVLGL 39 (111)
T ss_pred chhhcCC--CceecccCHHHHHHHHHHHHHHHHHHHH
Confidence 3666642 4455668889998877666666655543
No 112
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=29.33 E-value=3.6e+02 Score=22.94 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCCch-----------hhHhcCcccchhhhch
Q 047278 140 CVLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGR 172 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~ 172 (252)
.-+..++.+..|+.|+. +|.+.|+.|+|+.++.
T Consensus 179 ~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l 222 (259)
T cd00685 179 RNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL 222 (259)
T ss_pred HHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH
Confidence 34556777888877764 5777899999998876
No 113
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=28.52 E-value=2.9e+02 Score=21.67 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=12.6
Q ss_pred CccccCccCHHHHHH
Q 047278 32 LPLASGDFSRGTGIA 46 (252)
Q Consensus 32 Rpl~sG~is~~~a~~ 46 (252)
-|+++|+++.++...
T Consensus 59 vPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 59 VPIATGKIGFKDLLN 73 (140)
T ss_pred ccccCCCcCHHHHHH
Confidence 599999999998753
No 114
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=27.85 E-value=32 Score=30.78 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHHH
Q 047278 142 LSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRERV 175 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~~ 175 (252)
...++.+..|+.|+.+ |.+.|++|+|+.++.+.+
T Consensus 206 lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~ 250 (322)
T COG0142 206 LGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKA 250 (322)
T ss_pred hhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcC
No 115
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=26.49 E-value=63 Score=28.91 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchH
Q 047278 139 MCVLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRE 173 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~ 173 (252)
..-+..++.+..|+.|+. .|.+.|+.|+|+.+..+
T Consensus 203 G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 203 GKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Confidence 334567788888888865 56788999999998754
No 116
>PRK11383 hypothetical protein; Provisional
Probab=25.64 E-value=3.4e+02 Score=21.41 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=11.2
Q ss_pred HHHHHhhcCCCchhhH
Q 047278 144 FANGLLKDVPDVDGDR 159 (252)
Q Consensus 144 ~~~~~i~~~~D~~~D~ 159 (252)
.++.+-|+.||....+
T Consensus 117 gai~vQKn~RD~~~~~ 132 (145)
T PRK11383 117 GAVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHHhhhhhhhhcc
Confidence 3567889999985443
No 117
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=25.50 E-value=2.2e+02 Score=20.50 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=18.7
Q ss_pred hhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHH
Q 047278 25 DKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMG 59 (252)
Q Consensus 25 D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~ 59 (252)
++.|+|.|.. -.+..|+ ..+.+..++++..+
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSG 37 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHh
Confidence 5566666655 5778888 44445555555544
No 118
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=25.46 E-value=4.1e+02 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhcch
Q 047278 5 PAVLMNIYVVTLNQLYDV 22 (252)
Q Consensus 5 ~~~l~~~~~~~~Nd~~D~ 22 (252)
+.-..+..-.++|+++|.
T Consensus 84 a~~~~~~l~~a~~~i~~~ 101 (260)
T PF03631_consen 84 ASSFFASLQRALNRIYGV 101 (260)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344555666678888876
No 119
>CHL00151 preA prenyl transferase; Reviewed
Probab=24.94 E-value=54 Score=29.31 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchH
Q 047278 140 CVLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRE 173 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~ 173 (252)
--+.+++.+..|+.|+.+ |.+.|+.|+|+.++.+
T Consensus 205 ~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~ 249 (323)
T CHL00151 205 KHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALT 249 (323)
T ss_pred HHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHh
Confidence 345667788888888654 7788999999999855
No 120
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=24.64 E-value=46 Score=28.56 Aligned_cols=39 Identities=33% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHHHH
Q 047278 138 FMCVLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRERVF 176 (252)
Q Consensus 138 ~~~~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~~~ 176 (252)
+.--...++.+..|+.|..+ |.+.|+.|+|+.++.++..
T Consensus 174 ~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~ 223 (260)
T PF00348_consen 174 FGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAR 223 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCH
No 121
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=23.76 E-value=5.2e+02 Score=22.93 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchH
Q 047278 140 CVLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRE 173 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~ 173 (252)
--...++.+..|+.|+. +|.+.|++|+|+.+..+
T Consensus 200 ~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 200 YYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
Confidence 34566778888888775 56788999999999865
No 122
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.07 E-value=93 Score=19.51 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhcchhhhhc
Q 047278 8 LMNIYVVTLNQLYDVEIDKV 27 (252)
Q Consensus 8 l~~~~~~~~Nd~~D~~~D~~ 27 (252)
+.-.+..++|.+.|+++|=.
T Consensus 16 Cl~lyl~ald~~CDQg~~F~ 35 (47)
T PRK10299 16 CLLLWAQVFNMMCDQDVQFF 35 (47)
T ss_pred HHHHHHHHHHHHhcCCccce
Confidence 33467778999999997643
No 123
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.60 E-value=88 Score=21.34 Aligned_cols=27 Identities=7% Similarity=0.313 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHhhhhcchhhhhcCC
Q 047278 3 LVPAVLMNIYVVTLNQLYDVEIDKVNK 29 (252)
Q Consensus 3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~ 29 (252)
++++++.....+..|=|+-++.||.+.
T Consensus 38 vi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 38 VIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 567788889999999999999998654
Done!