Query 047278
Match_columns 252
No_of_seqs 245 out of 1736
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 54.6 11 0.00038 32.1 4.0 45 139-183 205-260 (297)
2 3lsn_A Geranyltranstransferase 48.6 7.8 0.00027 33.2 2.1 44 140-183 213-267 (304)
3 3ts7_A Geranyltranstransferase 46.2 8.3 0.00028 33.4 1.9 43 141-183 220-273 (324)
4 3lom_A Geranyltranstransferase 44.9 8.7 0.0003 33.0 1.8 43 141-183 221-274 (313)
5 3p8l_A Geranyltranstransferase 44.7 8.9 0.00031 32.8 1.8 43 141-183 217-270 (302)
6 4f62_A Geranyltranstransferase 44.6 10 0.00034 32.8 2.1 43 141-183 213-266 (317)
7 3p8r_A Geranyltranstransferase 44.2 8.9 0.0003 32.8 1.7 42 142-183 221-273 (302)
8 3uca_A Geranyltranstransferase 38.7 12 0.0004 32.4 1.7 43 141-183 242-295 (324)
9 2h8o_A Geranyltranstransferase 37.6 12 0.00042 32.4 1.6 43 141-183 253-306 (335)
10 3llw_A Geranyltranstransferase 37.1 19 0.00063 30.9 2.6 45 139-183 219-272 (311)
11 3pde_A Farnesyl-diphosphate sy 36.5 26 0.00088 30.0 3.4 46 141-186 216-272 (309)
12 3kra_B Geranyl diphosphate syn 36.3 1.3E+02 0.0046 24.9 7.9 45 143-187 73-117 (274)
13 1rqj_A Geranyltranstransferase 35.1 20 0.00068 30.4 2.5 43 141-183 214-267 (299)
14 1rtr_A Geranyltranstransferase 34.1 15 0.00053 31.2 1.6 43 141-183 209-262 (301)
15 2j1p_A Geranylgeranyl pyrophos 31.4 19 0.00064 30.5 1.7 41 139-182 222-262 (293)
16 3oyr_A Trans-isoprenyl diphosp 27.6 29 0.00098 30.2 2.3 36 139-174 221-267 (345)
17 2e8v_A Geranylgeranyl pyrophos 23.0 32 0.0011 29.7 1.7 34 142-175 206-250 (340)
18 3npk_A Geranyltranstransferase 22.6 41 0.0014 28.4 2.2 44 140-183 205-257 (291)
19 4gnt_B Carbohydrate-responsive 22.6 45 0.0015 17.0 1.5 13 238-250 9-21 (26)
20 3rmg_A Octaprenyl-diphosphate 21.8 43 0.0015 28.9 2.2 35 141-175 205-249 (334)
21 3aqb_B Component B of hexapren 20.6 36 0.0012 29.1 1.5 35 141-175 202-247 (325)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=54.63 E-value=11 Score=32.07 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHHHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
.--...++.+..|+.|+.+ |.+.|+.|+|+.+|.++++....-..
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999865 67789999999999998887765444
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=48.60 E-value=7.8 Score=33.19 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHHHHHHHHHHH
Q 047278 140 CVLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
--...++.+..|+.|+.+ |.+.|+.|+|+.+|.++++....-..
T Consensus 213 ~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 213 QAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 345667778888888754 67889999999999998887765544
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=46.24 E-value=8.3 Score=33.39 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.+.++..+.-..
T Consensus 220 ~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 273 (324)
T 3ts7_A 220 CIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3455666666666664 477899999999999998887765544
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=44.85 E-value=8.7 Score=33.05 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+.+ |.+.|+.|+|+.+|.++++....-..
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 44566777777777644 67899999999999998887765444
No 5
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=44.74 E-value=8.9 Score=32.80 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCCc-----------hhhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDV-----------DGDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~-----------~~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+ ..|.+.|+.|+|+.+|.++++..+.-..
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~ 270 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQL 270 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 3578899999999999999887765443
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=44.64 E-value=10 Score=32.75 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.++++..+.-..
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 266 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLH 266 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456667777776664 477889999999999998887765544
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=44.16 E-value=8.9 Score=32.78 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 142 LSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
...++.+..|+.|+. .|.+.|+.|+|+.+|.+.++..+.-..
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 445566666666653 477889999999999998887765443
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=38.70 E-value=12 Score=32.39 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCc-----------hhhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDV-----------DGDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~-----------~~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+ -.|.+.|+.|+|+.+|.++++..+.-..
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~ 295 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNIT 295 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 3578899999999999998887765443
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=37.56 E-value=12 Score=32.39 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.+.++....-..
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~ 306 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3455666776666664 467889999999999887776655433
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=37.11 E-value=19 Score=30.92 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCchhhH---------hcCcccchhhhchHHHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVDGDR---------KFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~---------~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
.--...++.+..|+.|+.+|. +.|+.|+|+.+|.+++.....-+.
T Consensus 219 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~ 272 (311)
T 3llw_A 219 GLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLK 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHH
Confidence 334567788888888887765 679999999999998876655443
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=36.54 E-value=26 Score=30.02 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMMLTA 186 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~ 186 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.+++.....-+.--+
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a 272 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSG 272 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 3456667777777764 578899999999999998877655444333
No 12
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=36.31 E-value=1.3e+02 Score=24.89 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHH
Q 047278 143 SFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAY 187 (252)
Q Consensus 143 ~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~ 187 (252)
-.+..+-.|+++.++|.+.|++|.=.++|++.+....-.++..++
T Consensus 73 H~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 73 HAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 345567788984444567999999999999977665555554444
No 13
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=35.05 E-value=20 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....-..
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 267 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLI 267 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456667777776665 466789999999999987776654433
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=34.13 E-value=15 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
-...++.+..|+.|+. .|.+.|+.|+|+.+|.+.++....-..
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~ 262 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHR 262 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4456777777777764 467789999999999988877655443
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=31.45 E-value=19 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHH
Q 047278 139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSM 182 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l 182 (252)
.--...++.+..|+.|+.+|. ++|+|+.+|.+.++..+.-.
T Consensus 222 g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 222 ARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 334567888999999999998 89999999998887765543
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=27.65 E-value=29 Score=30.18 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCCchh-----------hHhcCcccchhhhchHH
Q 047278 139 MCVLSFANGLLKDVPDVDG-----------DRKFDIQTLSVIVGRER 174 (252)
Q Consensus 139 ~~~~~~~~~~i~~~~D~~~-----------D~~~G~~Tl~v~~G~~~ 174 (252)
.--...++.+..|+.|+.+ |.+.|+.|+|+.++.++
T Consensus 221 g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 221 GLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 3345677788888888754 67789999999998753
No 17
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=23.02 E-value=32 Score=29.73 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHH
Q 047278 142 LSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERV 175 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~ 175 (252)
...++.+..|+.|+. +|.+.|+.|+|+.++.+..
T Consensus 206 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 250 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFT 250 (340)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 445666666666553 5788899999999987754
No 18
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=22.61 E-value=41 Score=28.43 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCchhhH---------hcCcccchhhhchHHHHHHHHHHH
Q 047278 140 CVLSFANGLLKDVPDVDGDR---------KFDIQTLSVIVGRERVFWLCVSMM 183 (252)
Q Consensus 140 ~~~~~~~~~i~~~~D~~~D~---------~~G~~Tl~v~~G~~~~~~l~~~l~ 183 (252)
--...++.+..|+.|+.+|. ..|+.|+|+.+|.+++.....-+.
T Consensus 205 ~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~ 257 (291)
T 3npk_A 205 LKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLL 257 (291)
T ss_dssp HHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHH
Confidence 34556777888888877654 478999999999998876554433
No 19
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=22.57 E-value=45 Score=16.97 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=10.7
Q ss_pred HHHHHHHHhhccc
Q 047278 238 FIWKTQLVSLKWK 250 (252)
Q Consensus 238 ~~~~~~~~~y~~~ 250 (252)
-||.-+|.+|+-+
T Consensus 9 aiwrawyiqyve~ 21 (26)
T 4gnt_B 9 AIWRAWYIQYVQR 21 (26)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999866
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=21.80 E-value=43 Score=28.85 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCch----------hhHhcCcccchhhhchHHH
Q 047278 141 VLSFANGLLKDVPDVD----------GDRKFDIQTLSVIVGRERV 175 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~----------~D~~~G~~Tl~v~~G~~~~ 175 (252)
-...++.+..|+.|+. +|.+.|+.|+|+.+..++.
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 205 YIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 3455666666555553 7899999999999976643
No 21
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=20.65 E-value=36 Score=29.11 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERV 175 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~ 175 (252)
-...++.+..|+.|+. +|.+.|+.|+|+.++.+..
T Consensus 202 ~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 202 CIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 3455666777766664 4667899999999987654
Done!