Query 047278
Match_columns 252
No_of_seqs 245 out of 1736
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 16:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 74.8 17 0.0013 28.5 11.7 51 7-58 71-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 42.7 52 0.0038 25.6 8.5 48 142-189 76-124 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 33.1 8.4 0.00061 30.6 1.9 39 141-179 214-263 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 31.9 84 0.0061 24.1 8.0 46 142-187 73-119 (290)
5 d1v4ea_ a.128.1.1 (A:) Octopre 21.9 90 0.0066 23.8 6.3 43 144-187 67-109 (280)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 13.7 17 0.0013 29.3 -0.2 33 141-173 229-271 (348)
7 d1iwga8 f.35.1.1 (A:513-566,A: 9.8 3E+02 0.022 19.7 6.4 13 44-56 160-172 (222)
8 d2q80a1 a.128.1.1 (A:6-296) Ge 9.1 3E+02 0.022 20.6 6.2 42 145-187 54-95 (291)
9 d1ezfa_ a.128.1.2 (A:) Squalen 7.3 57 0.0041 25.9 0.8 28 142-169 170-197 (333)
10 d1v74a_ d.243.1.1 (A:) Colicin 6.2 1.1E+02 0.0078 20.0 1.5 13 32-44 3-15 (107)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=74.79 E-value=17 Score=28.48 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHH
Q 047278 7 VLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM 58 (252)
Q Consensus 7 ~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l 58 (252)
=++|.+.-+..|+.|.|.|.. ++.+|-...+.....|...+-.+...++-+
T Consensus 71 EllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 71 EMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 367888889999988776643 345555555666666665554444444433
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=42.65 E-value=52 Score=25.56 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCchh-hHhcCcccchhhhchHHHHHHHHHHHHHHHHH
Q 047278 142 LSFANGLLKDVPDVDG-DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGA 189 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~-D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~ 189 (252)
.-.+..+.-|++|.+. |.+.|.+|.-..+|.+.+....-.++..++-.
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 3334556778888876 58999999999999998877666555555433
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=33.07 E-value=8.4 Score=30.61 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCch-----------hhHhcCcccchhhhchHHHHHHH
Q 047278 141 VLSFANGLLKDVPDVD-----------GDRKFDIQTLSVIVGRERVFWLC 179 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~-----------~D~~~G~~Tl~v~~G~~~~~~l~ 179 (252)
-+..++.+..|+.|+. .|.+.|+.|+|+.++.+++....
T Consensus 214 ~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 3456677777776654 47888999999999998766543
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=31.93 E-value=84 Score=24.11 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCchhh-HhcCcccchhhhchHHHHHHHHHHHHHHH
Q 047278 142 LSFANGLLKDVPDVDGD-RKFDIQTLSVIVGRERVFWLCVSMMLTAY 187 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~D-~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~ 187 (252)
.-.+..+.-|++|+++| .+.|++|.-.++|.+.+....-.++..++
T Consensus 73 lH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 73 IHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 33455567788887664 68999999999999977666554444443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=21.88 E-value=90 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHH
Q 047278 144 FANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAY 187 (252)
Q Consensus 144 ~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~ 187 (252)
.+..+.-|+.| ++|.+.|.+|.-..+|.+.+....-.++..++
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 34455667777 56789999999999999987666554444443
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.70 E-value=17 Score=29.26 Aligned_cols=33 Identities=12% Similarity=-0.084 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCch----------hhHhcCcccchhhhchH
Q 047278 141 VLSFANGLLKDVPDVD----------GDRKFDIQTLSVIVGRE 173 (252)
Q Consensus 141 ~~~~~~~~i~~~~D~~----------~D~~~G~~Tl~v~~G~~ 173 (252)
-+..++.+..|+.|+. +|.+.|++|+|+.+..+
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 3455666766666654 48888999999999664
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.84 E-value=3e+02 Score=19.67 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 047278 44 GIAIALISSLTSL 56 (252)
Q Consensus 44 a~~~~~~~~~l~l 56 (252)
....+.+..++++
T Consensus 160 ~i~~t~ltti~gf 172 (222)
T d1iwga8 160 PILMTSLAFILGV 172 (222)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 3333333344444
No 8
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.13 E-value=3e+02 Score=20.57 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=28.3
Q ss_pred HHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHH
Q 047278 145 ANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAY 187 (252)
Q Consensus 145 ~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~ 187 (252)
+..+..|+.|- +|.+.|..|.-..+|.+.+....-.++..++
T Consensus 54 asLihDDi~D~-~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~ 95 (291)
T d2q80a1 54 ASLLIDDIEDN-SKLRRGFPVAHSIYGIPSVINSANYVYFLGL 95 (291)
T ss_dssp HHHHHHHHHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccC-cccccCCCccccccchhhhhhHHHHHHHHHH
Confidence 34445555553 4678899999999999977666555554443
No 9
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.30 E-value=57 Score=25.87 Aligned_cols=28 Identities=7% Similarity=-0.131 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCCchhhHhcCcccchhh
Q 047278 142 LSFANGLLKDVPDVDGDRKFDIQTLSVI 169 (252)
Q Consensus 142 ~~~~~~~i~~~~D~~~D~~~G~~Tl~v~ 169 (252)
+..+..+.|=++|+.+|.+.|+--+|.-
T Consensus 170 lG~AlQltNIlRDi~eD~~~gR~YlP~e 197 (333)
T d1ezfa_ 170 MGLFLQKTNIIRDYLEDQQGGREFWPQE 197 (333)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCCCSCHH
T ss_pred HHHHHHHHHHHHhhHHHHhCCcEECCHH
Confidence 4556778888999999999999999963
No 10
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=6.19 E-value=1.1e+02 Score=20.02 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=8.5
Q ss_pred CccccCccCHHHH
Q 047278 32 LPLASGDFSRGTG 44 (252)
Q Consensus 32 Rpl~sG~is~~~a 44 (252)
-|+.||++|++|.
T Consensus 3 ~pLds~~ftrkqL 15 (107)
T d1v74a_ 3 DPLDSGRFSRKQL 15 (107)
T ss_dssp CTTCBTTBCHHHH
T ss_pred CCccCccchHHHH
Confidence 4666777776664
Done!