BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047283
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPD 60
LDA Y+ALE+A GGSL++V+SESGWP+AG A DN RTY +NLIQHVK+G+PK+P
Sbjct: 219 LDALYSALERASGGSLEVVVSESGWPSAGAFAA--TFDNGRTYLSNLIQHVKRGTPKRPK 276
Query: 61 RPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNFN 101
R IETY+FAMFDE KQ E+E+H+GLF P+K KY +NF+
Sbjct: 277 RAIETYLFAMFDENKKQ-PEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%), Gaps = 4/103 (3%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQG--SPKK 58
+D+ Y A EK GG +++I++SESGWP+ G A + NARTY NLI HVK+G +PKK
Sbjct: 215 VDSMYFATEKLGGQNIEIIVSESGWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKK 272
Query: 59 PDRPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNFN 101
P + IETY+FAMFDE +K+G E+H+GLF PD++ KYQ+NFN
Sbjct: 273 PGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQG--SPKK 58
+D+ Y A EK GG +++I++S SGWP+ G A + NARTY NLI HVK+G +PKK
Sbjct: 215 VDSMYFATEKLGGQNIEIIVSASGWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKK 272
Query: 59 PDRPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNFN 101
P + IETY+FAMFDE +K+G E+H+GLF PD++ KYQ+NFN
Sbjct: 273 PGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPD 60
+DA YAALEKAG ++ +V+SESGWP+AGG A + NARTYN LI HV G+PKK +
Sbjct: 210 VDAVYAALEKAGAPAVKVVVSESGWPSAGGFAA--SAGNARTYNQGLINHVGGGTPKKRE 267
Query: 61 RPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNF 100
+ETYIFAMF+E K G ER +GLF PDK Y + F
Sbjct: 268 -ALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNIQF 306
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPD 60
+DA +AALE+ GG ++ +V+SESGWP+AGG GA + NA+TYN NLI+HV G+P++P
Sbjct: 215 VDAVFAALERVGGANVAVVVSESGWPSAGG-GAEASTSNAQTYNQNLIRHVGGGTPRRPG 273
Query: 61 RPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNF 100
+ IE YIF MF+E K G IE+++GLF P+KQ YQ++F
Sbjct: 274 KEIEAYIFEMFNENQKAGG-IEQNFGLFYPNKQPVYQISF 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 99.8 bits (247), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 4/100 (4%)
Query: 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPD 60
+DA Y A+ K GG S+ +V+SESGWP+ GG A NAR YN +LI HV +G+P+ P
Sbjct: 211 VDAFYTAMGKHGGSSVKLVVSESGWPSGGGTAATPA--NARFYNQHLINHVGRGTPRHPG 268
Query: 61 RPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQSKYQVNF 100
IETYIFAMF+E K +E++WGLF P+ Q Y +NF
Sbjct: 269 -AIETYIFAMFNENQKDSG-VEQNWGLFYPNMQHVYPINF 306
>pdb|1V9C|A Chain A, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
pdb|1V9C|B Chain B, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
Length = 218
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 10 KAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGS 55
KA GG+ W DGA+ V NA T+ L++ ++QG+
Sbjct: 106 KATGGTRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGA 151
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 6 AALEKAGGGSLDIVISESGWPTAGGDGALTNVDNART----YNNNLIQHVKQGSPKKPDR 61
A+LEK G + D++I + WP GGD T + + R NN + + +G
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQRDMYAFLNNRALNLMNKG------- 390
Query: 62 PIETYIFAMFDEKDKQGAEIERHWGL 87
+ + E K E++R W L
Sbjct: 391 ---LTLHEIAAEVSKLPGELDRKWYL 413
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 6 AALEKAGGGSLDIVISESGWPTAGGDGALTNVDNART----YNNNLIQHVKQGSPKKPDR 61
A+LEK G + D++I + WP GGD T + + R NN + + +G
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQRDMYAFLNNRALNLMNKG------- 390
Query: 62 PIETYIFAMFDEKDKQGAEIERHWGL 87
+ + E K E++R W L
Sbjct: 391 ---LTLHEIAAEVSKLPGELDRKWYL 413
>pdb|3JUA|A Chain A, Structural Basis Of Yap Recognition By Tead4 In The
Hippo Pathway
pdb|3JUA|C Chain C, Structural Basis Of Yap Recognition By Tead4 In The
Hippo Pathway
pdb|3JUA|E Chain E, Structural Basis Of Yap Recognition By Tead4 In The
Hippo Pathway
pdb|3JUA|G Chain G, Structural Basis Of Yap Recognition By Tead4 In The
Hippo Pathway
Length = 220
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 42 TYNNNLIQHVKQGSPKKPDRPIET 65
TYN +L H+ Q SP D +ET
Sbjct: 27 TYNKHLFVHISQSSPSYSDPYLET 50
>pdb|4EAZ|A Chain A, Vgll1-Tead4 Structure
pdb|4EAZ|B Chain B, Vgll1-Tead4 Structure
Length = 223
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 42 TYNNNLIQHVKQGSPKKPDRPIETY----IFAMFDEK 74
TYN +L H+ Q SP D +ET I+ F EK
Sbjct: 30 TYNKHLFVHISQSSPSYSDPYLETVDIRQIYDKFPEK 66
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 109 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 137
>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
Length = 295
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 126 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 154
>pdb|4DNC|A Chain A, Crystal Structure Of Human Mof In Complex With Msl1
pdb|4DNC|B Chain B, Crystal Structure Of Human Mof In Complex With Msl1
Length = 289
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 111 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 139
>pdb|3TOA|A Chain A, Human Mof Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 266
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 105 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 133
>pdb|3TOB|A Chain A, Human Mof E350q Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 270
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 105 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 133
>pdb|2Y0M|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Mof
Length = 287
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 109 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 137
>pdb|3QAH|A Chain A, Crystal Structure Of Apo-Form Human Mof Catalytic Domain
Length = 304
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 63 IETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94
+E ++F + E D+QGA I G F+ +K+S
Sbjct: 135 VEPFVFYILTEVDRQGAHIV---GYFSKEKES 163
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 11 AGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIE 64
G G L I++SG G D A T ++ AR +L V + D+P++
Sbjct: 66 CGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHLHFDVADARNFRVDKPLD 119
>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|C Chain C, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|E Chain E, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|G Chain G, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
Length = 389
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 46 NLIQHVKQGSPKKPDRPIETYIFAMFDE 73
NL++ +K+G P + P+ T A++DE
Sbjct: 27 NLVEQLKKGEPLVMEIPMRTLSNAIYDE 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,387,110
Number of Sequences: 62578
Number of extensions: 138283
Number of successful extensions: 323
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 23
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)