Query 047283
Match_columns 101
No_of_seqs 106 out of 1052
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.6E-36 7.7E-41 228.0 6.1 98 1-100 213-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 99.9 3E-22 6.4E-27 149.0 8.8 76 10-92 226-305 (305)
3 smart00633 Glyco_10 Glycosyl h 97.7 0.00015 3.3E-09 53.3 7.2 83 2-99 169-252 (254)
4 PF07745 Glyco_hydro_53: Glyco 97.5 0.0002 4.3E-09 55.4 4.6 81 15-99 229-330 (332)
5 PF11790 Glyco_hydro_cc: Glyco 97.4 0.0012 2.7E-08 48.3 8.2 67 16-94 166-232 (239)
6 PRK10150 beta-D-glucuronidase; 96.3 0.05 1.1E-06 44.6 9.7 79 15-98 501-585 (604)
7 PF00232 Glyco_hydro_1: Glycos 96.0 0.0035 7.6E-08 49.9 1.6 87 4-97 342-442 (455)
8 TIGR03356 BGL beta-galactosida 95.4 0.081 1.8E-06 42.0 7.2 92 4-98 324-424 (427)
9 PRK13511 6-phospho-beta-galact 94.8 0.15 3.3E-06 41.0 7.2 82 4-92 354-445 (469)
10 PLN02814 beta-glucosidase 94.5 0.16 3.5E-06 41.3 6.8 82 3-93 373-461 (504)
11 PLN02998 beta-glucosidase 94.3 0.17 3.6E-06 41.2 6.6 83 4-93 379-466 (497)
12 PF00331 Glyco_hydro_10: Glyco 93.4 0.11 2.4E-06 39.7 3.8 92 2-98 220-313 (320)
13 PLN02849 beta-glucosidase 93.4 0.29 6.4E-06 39.8 6.4 83 4-93 372-461 (503)
14 TIGR01233 lacG 6-phospho-beta- 92.9 0.48 1E-05 38.2 6.9 79 13-93 364-444 (467)
15 PF00150 Cellulase: Cellulase 89.8 1.2 2.7E-05 31.9 5.8 18 13-30 234-251 (281)
16 PRK09589 celA 6-phospho-beta-g 89.4 1.5 3.2E-05 35.5 6.5 82 4-93 355-447 (476)
17 PRK09852 cryptic 6-phospho-bet 88.7 1.9 4.2E-05 34.9 6.7 82 4-93 353-444 (474)
18 PRK15014 6-phospho-beta-glucos 88.5 1.4 3.1E-05 35.6 5.8 81 4-92 356-447 (477)
19 PRK09593 arb 6-phospho-beta-gl 88.4 2.2 4.7E-05 34.6 6.8 82 4-93 356-448 (478)
20 KOG0626 Beta-glucosidase, lact 86.7 3.3 7.2E-05 34.2 6.9 79 12-97 404-498 (524)
21 COG4782 Uncharacterized protei 81.0 7.9 0.00017 30.7 6.6 40 11-53 143-186 (377)
22 COG3867 Arabinogalactan endo-1 81.0 2.9 6.2E-05 32.8 4.1 81 15-99 275-389 (403)
23 PF01229 Glyco_hydro_39: Glyco 69.9 14 0.00031 29.6 5.7 80 8-97 267-352 (486)
24 PF14903 WG_beta_rep: WG conta 62.9 7.1 0.00015 19.3 1.8 16 85-100 1-16 (35)
25 PF02449 Glyco_hydro_42: Beta- 58.5 25 0.00055 27.1 4.9 65 13-92 286-354 (374)
26 COG3934 Endo-beta-mannanase [C 54.4 21 0.00045 29.7 3.9 70 15-98 236-312 (587)
27 PRK10340 ebgA cryptic beta-D-g 52.4 21 0.00046 31.7 4.0 71 13-98 503-592 (1021)
28 PF13547 GTA_TIM: GTA TIM-barr 49.9 12 0.00027 28.8 1.9 38 15-52 206-264 (299)
29 PF05990 DUF900: Alpha/beta hy 49.3 80 0.0017 22.8 6.1 39 11-52 45-87 (233)
30 PF14606 Lipase_GDSL_3: GDSL-l 46.8 65 0.0014 22.9 5.1 49 3-52 82-132 (178)
31 cd02879 GH18_plant_chitinase_c 45.1 65 0.0014 24.1 5.2 46 6-52 58-105 (299)
32 cd00598 GH18_chitinase-like Th 44.6 1E+02 0.0022 21.1 5.8 46 6-52 56-101 (210)
33 PF02836 Glyco_hydro_2_C: Glyc 37.9 7.2 0.00016 29.0 -0.9 17 12-28 195-211 (298)
34 PRK15321 putative type III sec 37.2 77 0.0017 20.8 3.9 36 22-58 48-83 (120)
35 COG2723 BglB Beta-glucosidase/ 35.3 1.6E+02 0.0034 24.2 6.2 81 3-91 342-430 (460)
36 cd06548 GH18_chitinase The GH1 34.7 1.2E+02 0.0026 22.8 5.2 40 13-52 82-122 (322)
37 PRK09525 lacZ beta-D-galactosi 30.9 74 0.0016 28.4 4.0 71 13-98 529-618 (1027)
38 cd06545 GH18_3CO4_chitinase Th 30.8 1.6E+02 0.0034 21.3 5.2 40 13-52 57-96 (253)
39 smart00636 Glyco_18 Glycosyl h 29.1 1.5E+02 0.0033 22.1 5.0 46 6-52 58-104 (334)
40 PF10330 Stb3: Putative Sin3 b 28.4 67 0.0015 20.6 2.5 22 4-26 49-70 (92)
41 cd06546 GH18_CTS3_chitinase GH 27.9 2.2E+02 0.0048 20.9 5.6 48 5-52 62-109 (256)
42 COG2977 EntD Phosphopantethein 26.9 59 0.0013 24.2 2.3 25 4-28 62-89 (228)
43 PRK11449 putative deoxyribonuc 26.2 1.4E+02 0.003 22.0 4.3 36 14-52 89-124 (258)
44 PRK10425 DNase TatD; Provision 24.9 2.9E+02 0.0062 20.4 7.0 45 5-52 74-118 (258)
45 cd02877 GH18_hevamine_XipI_cla 24.3 2.7E+02 0.0059 20.9 5.6 71 4-77 61-131 (280)
46 COG4519 Uncharacterized protei 24.0 23 0.0005 22.4 -0.2 16 13-28 22-37 (95)
47 PF09904 HTH_43: Winged helix- 23.5 11 0.00024 24.1 -1.7 21 6-27 15-35 (90)
48 PF03662 Glyco_hydro_79n: Glyc 23.0 55 0.0012 25.4 1.6 19 13-31 283-301 (319)
49 PF01026 TatD_DNase: TatD rela 22.9 2.2E+02 0.0049 20.5 4.8 45 6-52 75-121 (255)
50 PRK05508 methionine sulfoxide 22.5 33 0.00072 23.0 0.3 13 19-31 50-62 (119)
51 cd02872 GH18_chitolectin_chito 22.1 2.1E+02 0.0045 21.7 4.7 40 13-52 68-109 (362)
52 PF03366 YEATS: YEATS family; 22.1 58 0.0013 20.2 1.3 12 15-26 40-51 (84)
53 PRK14847 hypothetical protein; 21.8 96 0.0021 24.2 2.8 22 4-30 59-80 (333)
54 PF12965 DUF3854: Domain of un 21.3 56 0.0012 21.8 1.2 11 12-22 7-17 (130)
55 PRK12344 putative alpha-isopro 20.7 98 0.0021 25.5 2.7 21 3-28 31-51 (524)
56 cd02876 GH18_SI-CLP Stabilin-1 20.6 93 0.002 23.3 2.4 46 6-52 58-105 (318)
57 COG2161 StbD Antitoxin of toxi 20.4 1.2E+02 0.0026 18.7 2.5 22 7-28 18-39 (86)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.6e-36 Score=227.96 Aligned_cols=98 Identities=51% Similarity=0.985 Sum_probs=75.6
Q ss_pred ChHHHHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCCC
Q 047283 1 LDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGAE 80 (101)
Q Consensus 1 ~Da~~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~~ 80 (101)
||++++||+++|+++++|+|+||||||.|+.. ++++||+.|++++++++.+|||++|+.++++|||+||||+||++..
T Consensus 213 ~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~ 290 (310)
T PF00332_consen 213 VDAVYAAMEKLGFPNVPVVVGETGWPSAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPE 290 (310)
T ss_dssp HHHHHHHHHTTT-TT--EEEEEE---SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSG
T ss_pred HHHHHHHHHHhCCCCceeEEeccccccCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCc
Confidence 59999999999999999999999999999854 8999999999999999999999999889999999999999999777
Q ss_pred cCCceEeecCCCCeeeeecc
Q 047283 81 IERHWGLFAPDKQSKYQVNF 100 (101)
Q Consensus 81 ~E~~~Gl~~~d~~~K~~~~~ 100 (101)
.|+|||||++|++|||+|+|
T Consensus 291 ~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 291 VERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp GGGG--SB-TTSSBSS----
T ss_pred ccceeeeECCCCCeecCCCC
Confidence 99999999999999999998
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3e-22 Score=149.03 Aligned_cols=76 Identities=24% Similarity=0.603 Sum_probs=67.6
Q ss_pred HcCCCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCC--CcCCce
Q 047283 10 KAGGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGA--EIERHW 85 (101)
Q Consensus 10 ~~g~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~--~~E~~~ 85 (101)
.++..+|++||+||||||.|.. .++||++||++|+++++|.++ +.++++|+|++|||+||..+ .+|+||
T Consensus 226 sa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~~G~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 226 SACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------SCGYDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred HhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------ccCccEEEeeeccccccCccccchhhce
Confidence 3466679999999999999986 689999999999999999986 25899999999999999864 799999
Q ss_pred EeecCCC
Q 047283 86 GLFAPDK 92 (101)
Q Consensus 86 Gl~~~d~ 92 (101)
|++..++
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9998764
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.73 E-value=0.00015 Score=53.30 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=59.2
Q ss_pred hHHHHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecC-CCCCCCC
Q 047283 2 DATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDE-KDKQGAE 80 (101)
Q Consensus 2 Da~~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe-~~k~~~~ 80 (101)
+.+...|++++..++||+|||..-|... +++.|+++++.++..+.+ . | ....+++..+.|. .|.+
T Consensus 169 ~~~~~~l~~~~~~g~pi~iTE~dv~~~~------~~~~qA~~~~~~l~~~~~-~---p-~v~gi~~Wg~~d~~~W~~--- 234 (254)
T smart00633 169 AEIRAALDRFASLGLEIQITELDISGYP------NPQAQAADYEEVFKACLA-H---P-AVTGVTVWGVTDKYSWLD--- 234 (254)
T ss_pred HHHHHHHHHHHHcCCceEEEEeecCCCC------cHHHHHHHHHHHHHHHHc-C---C-CeeEEEEeCCccCCcccC---
Confidence 4567778887777999999999999852 447888899999998853 1 2 1233444455553 4544
Q ss_pred cCCceEeecCCCCeeeeec
Q 047283 81 IERHWGLFAPDKQSKYQVN 99 (101)
Q Consensus 81 ~E~~~Gl~~~d~~~K~~~~ 99 (101)
+.+-|||+.|++||..+.
T Consensus 235 -~~~~~L~d~~~~~kpa~~ 252 (254)
T smart00633 235 -GGAPLLFDANYQPKPAYW 252 (254)
T ss_pred -CCCceeECCCCCCChhhh
Confidence 257899999999998753
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.45 E-value=0.0002 Score=55.39 Aligned_cols=81 Identities=15% Similarity=0.301 Sum_probs=44.6
Q ss_pred CCcEEEcccccCCCCCC-----C----------CCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEE-eecCCC---
Q 047283 15 SLDIVISESGWPTAGGD-----G----------ALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFA-MFDEKD--- 75 (101)
Q Consensus 15 ~~~i~itEtGWPs~g~~-----~----------~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~-~fDe~~--- 75 (101)
+|+|+|.|||||..-.. . --+|++.|+.|+++++..+.. .|. +.+.-+|+-| ..-...
T Consensus 229 ~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~GvfYWeP~w~~~~~~~ 305 (332)
T PF07745_consen 229 GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLGVFYWEPAWIPVENGW 305 (332)
T ss_dssp T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEEE-TT-GGGTTHH
T ss_pred CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEEEEeeccccccCCccc
Confidence 69999999999998211 1 125899999999999998852 221 1355566655 222221
Q ss_pred --CCCCCcCCceEeecCCCCeeeeec
Q 047283 76 --KQGAEIERHWGLFAPDKQSKYQVN 99 (101)
Q Consensus 76 --k~~~~~E~~~Gl~~~d~~~K~~~~ 99 (101)
..+...|.. +||+.+|++-..|+
T Consensus 306 ~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 306 DWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp HHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred ccCCCCCcccc-ccCCCCCCCchHhh
Confidence 122233333 89999999877664
No 5
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.41 E-value=0.0012 Score=48.33 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=46.3
Q ss_pred CcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCCCcCCceEeecCCCCe
Q 047283 16 LDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQS 94 (101)
Q Consensus 16 ~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~~~E~~~Gl~~~d~~~ 94 (101)
|||||||.|+...+. ..+.+++..|++..+..+.+ . ...-.++||...+. . ......-.|++.+|++
T Consensus 166 kPIWITEf~~~~~~~---~~~~~~~~~fl~~~~~~ld~----~-~~VeryawF~~~~~-~---~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 166 KPIWITEFGCWNGGS---QGSDEQQASFLRQALPWLDS----Q-PYVERYAWFGFMND-G---SGVNPNSALLDADGSL 232 (239)
T ss_pred CCEEEEeecccCCCC---CCCHHHHHHHHHHHHHHHhc----C-CCeeEEEecccccc-c---CCCccccccccCCCCc
Confidence 999999999987322 27889999999999999952 1 23455678883332 2 2335566677777755
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.27 E-value=0.05 Score=44.63 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCcEEEcccccCCCCC----CCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCC--CcCCceEee
Q 047283 15 SLDIVISESGWPTAGG----DGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGA--EIERHWGLF 88 (101)
Q Consensus 15 ~~~i~itEtGWPs~g~----~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~--~~E~~~Gl~ 88 (101)
+|||+|+|.|+.+..+ ....-+.+.|..|++...+.+.+ +| .-+-.|+..++|-....+. ....+.||+
T Consensus 501 ~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p-~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 501 HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VP-AVVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CC-ceEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 8999999999876322 12335788898888877776642 22 3466799999995443221 123588999
Q ss_pred cCCCCeeeee
Q 047283 89 APDKQSKYQV 98 (101)
Q Consensus 89 ~~d~~~K~~~ 98 (101)
+.||+||...
T Consensus 576 ~~dr~~k~~~ 585 (604)
T PRK10150 576 TRDRQPKSAA 585 (604)
T ss_pred cCCCCChHHH
Confidence 9999999754
No 7
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.98 E-value=0.0035 Score=49.88 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=44.7
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC-CCCCCHHHH----HHHHHHHHHHHhhCCCCCCCCCceEE-EEEeecCCC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD-GALTNVDNA----RTYNNNLIQHVKQGSPKKPDRPIETY-IFAMFDEKD 75 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~-~~~as~~na----~~y~~~~~~~~~~gtp~~~~~~~~~~-~f~~fDe~~ 75 (101)
++..|..+ .++++||+|||.|++..... ...---... +.++..+.+.+..| -++..| ..++.| ++
T Consensus 342 l~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dG------v~V~GY~~WSl~D-n~ 414 (455)
T PF00232_consen 342 LRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDG------VNVRGYFAWSLLD-NF 414 (455)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-------EEEEEEEETSB----
T ss_pred HhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccC------CCeeeEeeecccc-cc
Confidence 34444443 36779999999999887643 111112233 44444455555433 344445 444555 55
Q ss_pred CCCCCcCCceEeecCC------CCeeee
Q 047283 76 KQGAEIERHWGLFAPD------KQSKYQ 97 (101)
Q Consensus 76 k~~~~~E~~~Gl~~~d------~~~K~~ 97 (101)
.-..+..+.|||++-| |+||-+
T Consensus 415 Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 415 EWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccccCccCccCceEEcCCCCcCeeeccH
Confidence 4434688999999988 777754
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=95.36 E-value=0.081 Score=42.00 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=47.8
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC-CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEE-EEEeecCCCCCCC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD-GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETY-IFAMFDEKDKQGA 79 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~-~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~-~f~~fDe~~k~~~ 79 (101)
++..|..+ -+.+.||+|||.|+...... .....-+....|++.-+..+.+.. ..+-++..| ..++.| ++.-..
T Consensus 324 l~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai--~dGv~v~GY~~Wsl~D-n~ew~~ 400 (427)
T TIGR03356 324 LYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAI--EEGVDVRGYFVWSLLD-NFEWAE 400 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHH--HCCCCEEEEEeccccc-ccchhc
Confidence 44444433 35556899999999754321 101112234445555554443111 011234444 555666 433323
Q ss_pred CcCCceEeecCC-----CCeeeee
Q 047283 80 EIERHWGLFAPD-----KQSKYQV 98 (101)
Q Consensus 80 ~~E~~~Gl~~~d-----~~~K~~~ 98 (101)
+..+.|||+.-| |.||-+.
T Consensus 401 gy~~rfGl~~VD~~~~~R~~K~S~ 424 (427)
T TIGR03356 401 GYSKRFGLVHVDYETQKRTPKDSA 424 (427)
T ss_pred ccccccceEEECCCCCccccccee
Confidence 588999999876 4466543
No 9
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=94.77 E-value=0.15 Score=40.97 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=43.7
Q ss_pred HHHHHHHc--CCCC-CcEEEcccccCCCCCC--CCCCCHHHHHHHHHHHHH----HHhhCCCCCCCCCceEE-EEEeecC
Q 047283 4 TYAALEKA--GGGS-LDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQ----HVKQGSPKKPDRPIETY-IFAMFDE 73 (101)
Q Consensus 4 ~~~al~~~--g~~~-~~i~itEtGWPs~g~~--~~~as~~na~~y~~~~~~----~~~~gtp~~~~~~~~~~-~f~~fDe 73 (101)
++..|..+ -+++ .||+|||.|+...... +....-..-..|+++-+. .+..| .++..| .-++.|
T Consensus 354 l~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dG------v~v~GY~~WSl~D- 426 (469)
T PRK13511 354 LYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDG------ANVKGYFIWSLMD- 426 (469)
T ss_pred HHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccccc-
Confidence 44444433 2555 5899999999854321 111111233345544444 44333 344444 445665
Q ss_pred CCCCCCCcCCceEeecCCC
Q 047283 74 KDKQGAEIERHWGLFAPDK 92 (101)
Q Consensus 74 ~~k~~~~~E~~~Gl~~~d~ 92 (101)
++.-..+..+.|||++-|.
T Consensus 427 nfEW~~Gy~~RfGl~~VD~ 445 (469)
T PRK13511 427 VFSWSNGYEKRYGLFYVDF 445 (469)
T ss_pred ccchhcCccCccceEEECC
Confidence 4433335889999988653
No 10
>PLN02814 beta-glucosidase
Probab=94.46 E-value=0.16 Score=41.32 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=45.1
Q ss_pred HHHHHHHHc--CCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHH----HHHhhCCCCCCCCCceEE-EEEeecCCC
Q 047283 3 ATYAALEKA--GGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLI----QHVKQGSPKKPDRPIETY-IFAMFDEKD 75 (101)
Q Consensus 3 a~~~al~~~--g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~----~~~~~gtp~~~~~~~~~~-~f~~fDe~~ 75 (101)
.++..|..+ -+++.||+|||-|+....+.. -.-..-..|+++-+ +.+..| .++..| .-++.| ++
T Consensus 373 Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~--i~D~~Ri~Yl~~hl~~l~~Ai~dG------v~V~GY~~WSllD-nf 443 (504)
T PLN02814 373 GLEGILEHIKQSYNNPPIYILENGMPMKHDST--LQDTPRVEFIQAYIGAVLNAIKNG------SDTRGYFVWSMID-LY 443 (504)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCc--ccCHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccchh-hh
Confidence 345555443 355668999999997543210 11223334544444 444333 344445 444665 44
Q ss_pred CCCCCcCCceEeecCCCC
Q 047283 76 KQGAEIERHWGLFAPDKQ 93 (101)
Q Consensus 76 k~~~~~E~~~Gl~~~d~~ 93 (101)
.-..+..+.|||++-|.+
T Consensus 444 EW~~Gy~~RfGLvyVD~~ 461 (504)
T PLN02814 444 ELLGGYTTSFGMYYVNFS 461 (504)
T ss_pred chhccccCccceEEECCC
Confidence 433358999999886543
No 11
>PLN02998 beta-glucosidase
Probab=94.33 E-value=0.17 Score=41.19 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEE-EeecCCCCCC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIF-AMFDEKDKQG 78 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f-~~fDe~~k~~ 78 (101)
++..|..+ -+.+.||+|||.|+....+. ...-=++--+.++..+.+.+..| -++..|.. ++.| ++.-.
T Consensus 379 l~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dG------v~V~GY~~WSl~D-nfEW~ 451 (497)
T PLN02998 379 LQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKG------SDVKGYFQWSLMD-VFELF 451 (497)
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccchh-hhchh
Confidence 44445433 25555899999999875321 10011222333444444444433 34444544 4555 54433
Q ss_pred CCcCCceEeecCCCC
Q 047283 79 AEIERHWGLFAPDKQ 93 (101)
Q Consensus 79 ~~~E~~~Gl~~~d~~ 93 (101)
.+..+.|||++-|.+
T Consensus 452 ~Gy~~RfGLv~VD~~ 466 (497)
T PLN02998 452 GGYERSFGLLYVDFK 466 (497)
T ss_pred ccccCccceEEECCC
Confidence 358899999886543
No 12
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.41 E-value=0.11 Score=39.68 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=57.6
Q ss_pred hHHHHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEE-eecCC-CCCCC
Q 047283 2 DATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFA-MFDEK-DKQGA 79 (101)
Q Consensus 2 Da~~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~-~fDe~-~k~~~ 79 (101)
+.+..+|+++..-+++|.|||.-=.+...+......+.|+.++++++..+.+- |...+..+.+. +.|.. |....
T Consensus 220 ~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~----~~~~v~git~Wg~~D~~sW~~~~ 295 (320)
T PF00331_consen 220 EQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSH----PPAAVEGITWWGFTDGYSWRPDT 295 (320)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHT----THCTEEEEEESSSBTTGSTTGGH
T ss_pred HHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhC----CccCCCEEEEECCCCCCcccCCC
Confidence 45777888887778999999997666554321245677888899999988531 10135555555 55533 54421
Q ss_pred CcCCceEeecCCCCeeeee
Q 047283 80 EIERHWGLFAPDKQSKYQV 98 (101)
Q Consensus 80 ~~E~~~Gl~~~d~~~K~~~ 98 (101)
. -.+=+||+.|.+||+..
T Consensus 296 ~-~~~~~lfd~~~~~Kpa~ 313 (320)
T PF00331_consen 296 P-PDRPLLFDEDYQPKPAY 313 (320)
T ss_dssp S-EG--SSB-TTSBB-HHH
T ss_pred C-CCCCeeECCCcCCCHHH
Confidence 1 23346999999999864
No 13
>PLN02849 beta-glucosidase
Probab=93.40 E-value=0.29 Score=39.83 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=45.0
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHH----HHhhCCCCCCCCCceEEEE-EeecCCCC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQ----HVKQGSPKKPDRPIETYIF-AMFDEKDK 76 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~----~~~~gtp~~~~~~~~~~~f-~~fDe~~k 76 (101)
++..|..+ -+++.||+|||.|++..........-..--.|+++-+. .+..| .++..|.. ++.| ++.
T Consensus 372 l~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dG------v~V~GY~~WSl~D-nfE 444 (503)
T PLN02849 372 MESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNG------SDTRGYFVWSFMD-LYE 444 (503)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccchh-hhc
Confidence 44444433 25555899999999865422111112223345444444 44333 34444544 4555 554
Q ss_pred CCCCcCCceEeecCCCC
Q 047283 77 QGAEIERHWGLFAPDKQ 93 (101)
Q Consensus 77 ~~~~~E~~~Gl~~~d~~ 93 (101)
-..+.++.|||++-|..
T Consensus 445 W~~Gy~~RfGLi~VD~~ 461 (503)
T PLN02849 445 LLKGYEFSFGLYSVNFS 461 (503)
T ss_pred hhccccCccceEEECCC
Confidence 43458999999886543
No 14
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=92.88 E-value=0.48 Score=38.18 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=41.7
Q ss_pred CCC-CcEEEcccccCCCCCC-CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCCCcCCceEeecC
Q 047283 13 GGS-LDIVISESGWPTAGGD-GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGAEIERHWGLFAP 90 (101)
Q Consensus 13 ~~~-~~i~itEtGWPs~g~~-~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~~~E~~~Gl~~~ 90 (101)
++. .||+|||.|....... ...-.-..--.|+++-+..+.+.. ..+-++..|+..-+=+++.-..+..+.|||+.-
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai--~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~V 441 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAI--ADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYV 441 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHH--HcCCCEEEEeeccchhhhchhccccCccceEEE
Confidence 444 4799999999865422 101111223345444444332110 012345556555444465544458999999886
Q ss_pred CCC
Q 047283 91 DKQ 93 (101)
Q Consensus 91 d~~ 93 (101)
|.+
T Consensus 442 D~~ 444 (467)
T TIGR01233 442 DFD 444 (467)
T ss_pred CCC
Confidence 543
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=89.79 E-value=1.2 Score=31.90 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=14.4
Q ss_pred CCCCcEEEcccccCCCCC
Q 047283 13 GGSLDIVISESGWPTAGG 30 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~ 30 (101)
..++||+|+|.|+++...
T Consensus 234 ~~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 234 KNGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HTTSEEEEEEEESSTTTS
T ss_pred HcCCeEEEeCcCCcCCCC
Confidence 346899999999996543
No 16
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=89.42 E-value=1.5 Score=35.49 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC--CCCCCHHH----HHHHHHHHHHHH-hhCCCCCCCCCceE-EEEEeecC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD--GALTNVDN----ARTYNNNLIQHV-KQGSPKKPDRPIET-YIFAMFDE 73 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~--~~~as~~n----a~~y~~~~~~~~-~~gtp~~~~~~~~~-~~f~~fDe 73 (101)
++..|..+ -+. +||+|||.|....... ...-.-.. -+.+++.+.+.+ ..| -++.. |.-++.|
T Consensus 355 l~~~L~~~~~~Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dG------v~V~GY~~WSl~D- 426 (476)
T PRK09589 355 LRYSLNWFWDHYQ-LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDG------VDLMGYTPWGCID- 426 (476)
T ss_pred HHHHHHHHHHhcC-CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcC------CCeEEEeeccccc-
Confidence 44455433 243 6899999999864422 10011122 334444454444 333 23334 4555666
Q ss_pred CCCCCCC-cCCceEeecCCCC
Q 047283 74 KDKQGAE-IERHWGLFAPDKQ 93 (101)
Q Consensus 74 ~~k~~~~-~E~~~Gl~~~d~~ 93 (101)
++.-..+ ..+.|||++-|.+
T Consensus 427 n~Ew~~G~y~~RfGlv~VD~~ 447 (476)
T PRK09589 427 LVSAGTGEMKKRYGFIYVDKD 447 (476)
T ss_pred cccccCCccccceeeEEEcCC
Confidence 4433233 6899999886543
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=88.71 E-value=1.9 Score=34.88 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHH----HHHHHhhCCCCCCCCCceEEEE-EeecCC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNN----LIQHVKQGSPKKPDRPIETYIF-AMFDEK 74 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~----~~~~~~~gtp~~~~~~~~~~~f-~~fDe~ 74 (101)
++..|..+ -+. +||+|||-|....... ...-.-..-..|++. +.+.+..| .++..|.. ++.| +
T Consensus 353 l~~~l~~~~~~Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dG------v~V~GY~~WSl~D-n 424 (474)
T PRK09852 353 LRITMNMMYDRYQ-KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADG------IPLMGYTTWGCID-L 424 (474)
T ss_pred HHHHHHHHHHhcC-CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCC------CCEEEEEeecccc-c
Confidence 44455433 243 5799999999864421 100112223334444 44444333 34444544 4555 5
Q ss_pred CCCCCC-cCCceEeecCCCC
Q 047283 75 DKQGAE-IERHWGLFAPDKQ 93 (101)
Q Consensus 75 ~k~~~~-~E~~~Gl~~~d~~ 93 (101)
+.-..+ ..+.|||+.-|.+
T Consensus 425 ~Ew~~G~y~~RfGLv~VD~~ 444 (474)
T PRK09852 425 VSASTGEMSKRYGFVYVDRD 444 (474)
T ss_pred ccccCCCccceeeeEEECCC
Confidence 543233 7899999886643
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=88.47 E-value=1.4 Score=35.59 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHH----HHHHHh-hCCCCCCCCCceEE-EEEeecC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNN----LIQHVK-QGSPKKPDRPIETY-IFAMFDE 73 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~----~~~~~~-~gtp~~~~~~~~~~-~f~~fDe 73 (101)
++..|..+ -+. +||+|||-|....... ...-.-..--.|+++ +.+.+. .| .++..| .-++.|
T Consensus 356 l~~~l~~~~~~Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dG------v~v~GY~~WSl~D- 427 (477)
T PRK15014 356 LRYALCELYERYQ-KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDG------VDLMGYTPWGCID- 427 (477)
T ss_pred HHHHHHHHHHhcC-CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccchh-
Confidence 44445433 243 5899999999864421 100111223334444 444442 33 344444 444555
Q ss_pred CCCCC-CCcCCceEeecCCC
Q 047283 74 KDKQG-AEIERHWGLFAPDK 92 (101)
Q Consensus 74 ~~k~~-~~~E~~~Gl~~~d~ 92 (101)
++.-. +...+.|||++-|.
T Consensus 428 nfEw~~G~y~~RfGl~~VD~ 447 (477)
T PRK15014 428 CVSFTTGQYSKRYGFIYVNK 447 (477)
T ss_pred hhcccCCCccCccceEEECC
Confidence 44332 33789999987543
No 19
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=88.39 E-value=2.2 Score=34.56 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=43.7
Q ss_pred HHHHHHHc--CCCCCcEEEcccccCCCCCC--CCCC----CHHHHHHHHHHHHHHHh-hCCCCCCCCCceEE-EEEeecC
Q 047283 4 TYAALEKA--GGGSLDIVISESGWPTAGGD--GALT----NVDNARTYNNNLIQHVK-QGSPKKPDRPIETY-IFAMFDE 73 (101)
Q Consensus 4 ~~~al~~~--g~~~~~i~itEtGWPs~g~~--~~~a----s~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~-~f~~fDe 73 (101)
++..|..+ -+. +||+|||-|....... ...- =++--+.+++.+.+.+. .| .++..| .-++.|
T Consensus 356 l~~~l~~~~~~Y~-~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dG------v~v~GY~~WSl~D- 427 (478)
T PRK09593 356 LRITLNTIWDRYQ-KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDG------VELLGYTTWGCID- 427 (478)
T ss_pred HHHHHHHHHHHcC-CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC------CCEEEEeeccchH-
Confidence 44455443 243 5899999999865432 1011 12233444444544442 33 244445 444555
Q ss_pred CCCCCCC-cCCceEeecCCCC
Q 047283 74 KDKQGAE-IERHWGLFAPDKQ 93 (101)
Q Consensus 74 ~~k~~~~-~E~~~Gl~~~d~~ 93 (101)
++.-... ..+.|||+.-|..
T Consensus 428 n~EW~~G~y~~RfGl~~VD~~ 448 (478)
T PRK09593 428 LVSAGTGEMKKRYGFIYVDRD 448 (478)
T ss_pred hhcccCCCccCeeceEEECCC
Confidence 4433233 7899999886643
No 20
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=86.73 E-value=3.3 Score=34.17 Aligned_cols=79 Identities=15% Similarity=0.312 Sum_probs=48.2
Q ss_pred CCCCCcEEEcccccCCCCCC--------CCCCCHHHHHHHHHHHHHHHh-hCCCCCCCCCceEEEEEeecC-CCCCCCCc
Q 047283 12 GGGSLDIVISESGWPTAGGD--------GALTNVDNARTYNNNLIQHVK-QGSPKKPDRPIETYIFAMFDE-KDKQGAEI 81 (101)
Q Consensus 12 g~~~~~i~itEtGWPs~g~~--------~~~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~f~~fDe-~~k~~~~~ 81 (101)
.+.|.+|+|+|-|-+..... ....=.+-.+.|++.+.+.+. .| . ....+|+.++-|. .|.. ..
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dg----v-nv~GYf~WSLmDnfEw~~--Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDG----V-NVKGYFVWSLLDNFEWLD--GY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcC----C-ceeeEEEeEcccchhhhc--Cc
Confidence 48899999999999987543 112223334555555555553 22 1 1334678888773 2333 56
Q ss_pred CCceEeecC------CCCeeee
Q 047283 82 ERHWGLFAP------DKQSKYQ 97 (101)
Q Consensus 82 E~~~Gl~~~------d~~~K~~ 97 (101)
...||||+- .|.||-.
T Consensus 477 ~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 477 KVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred ccccccEEEeCCCCCcCCchhH
Confidence 789999983 4556543
No 21
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.02 E-value=7.9 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=30.1
Q ss_pred cCCCCCcEEEcccccCCCCCC----CCCCCHHHHHHHHHHHHHHHhh
Q 047283 11 AGGGSLDIVISESGWPTAGGD----GALTNVDNARTYNNNLIQHVKQ 53 (101)
Q Consensus 11 ~g~~~~~i~itEtGWPs~g~~----~~~as~~na~~y~~~~~~~~~~ 53 (101)
.|...++|+.| |||.|.- ....|-..++..++.+++.+..
T Consensus 143 ~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 143 SGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 36778899988 9999975 2346666777788888888753
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=81.00 E-value=2.9 Score=32.79 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=51.0
Q ss_pred CCcEEEccccc--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEe------ec-
Q 047283 15 SLDIVISESGW--------------PTAGGD-GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAM------FD- 72 (101)
Q Consensus 15 ~~~i~itEtGW--------------Ps~g~~-~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~------fD- 72 (101)
+|.|+|.||+. |+.+.. +--.+++-|..|++++|..+. ..|.. ++..+|+.|- .-
T Consensus 275 ~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~--~GlGvFYWEp~wipv~~g~ 351 (403)
T COG3867 275 HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKS--NGLGVFYWEPAWIPVVLGS 351 (403)
T ss_pred cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCC--CceEEEEecccceeccCCC
Confidence 68999999998 666543 223677889999999999884 23322 3556666551 12
Q ss_pred ------------CCCCCCCCcCCceEeecCCCCeeeeec
Q 047283 73 ------------EKDKQGAEIERHWGLFAPDKQSKYQVN 99 (101)
Q Consensus 73 ------------e~~k~~~~~E~~~Gl~~~d~~~K~~~~ 99 (101)
|+|+.+ ..-.+=-||+.+|.|-+.|+
T Consensus 352 gwat~~~~~y~~e~w~~g-savdNqaLfdf~G~~LPSl~ 389 (403)
T COG3867 352 GWATSYAAKYDPENWGEG-SAVDNQALFDFNGHPLPSLN 389 (403)
T ss_pred ccccchhhccCcccccCC-CccchhhhhhccCCcCcchh
Confidence 333332 22233347888888777664
No 23
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=69.90 E-value=14 Score=29.64 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHcCCCCCcEEEcccccCCCCCC-C-CCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEe----ecCCCCCCCCc
Q 047283 8 LEKAGGGSLDIVISESGWPTAGGD-G-ALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAM----FDEKDKQGAEI 81 (101)
Q Consensus 8 l~~~g~~~~~i~itEtGWPs~g~~-~-~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~----fDe~~k~~~~~ 81 (101)
+...+.+++++.+|| |.+.-.+ . -.-|.-+|.-.++.++.... ..++.|-|-. |.|.-.+...+
T Consensus 267 ~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~sywt~sD~Fee~~~~~~pf 336 (486)
T PF01229_consen 267 INDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYWTFSDRFEENGTPRKPF 336 (486)
T ss_dssp HHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES-SBS---TTSS-SSSS
T ss_pred HhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhccchhhhhhccCCCCCce
Confidence 334478899999999 8776544 1 12344555544455665553 1234443333 33332222356
Q ss_pred CCceEeecCCCCeeee
Q 047283 82 ERHWGLFAPDKQSKYQ 97 (101)
Q Consensus 82 E~~~Gl~~~d~~~K~~ 97 (101)
-..|||++.++-+|..
T Consensus 337 ~ggfGLlt~~gI~KPa 352 (486)
T PF01229_consen 337 HGGFGLLTKLGIPKPA 352 (486)
T ss_dssp SS-S-SEECCCEE-HH
T ss_pred ecchhhhhccCCCchH
Confidence 6779999999988864
No 24
>PF14903 WG_beta_rep: WG containing repeat
Probab=62.85 E-value=7.1 Score=19.31 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=12.9
Q ss_pred eEeecCCCCeeeeecc
Q 047283 85 WGLFAPDKQSKYQVNF 100 (101)
Q Consensus 85 ~Gl~~~d~~~K~~~~~ 100 (101)
||+++.+|+...+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999988776654
No 25
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=58.47 E-value=25 Score=27.05 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCCcEEEccc--ccCCCCCC-CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCCCCCcCC-ceEee
Q 047283 13 GGSLDIVISES--GWPTAGGD-GALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQGAEIER-HWGLF 88 (101)
Q Consensus 13 ~~~~~i~itEt--GWPs~g~~-~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~~~~~E~-~~Gl~ 88 (101)
.+++|.+|.|+ | +..-.. +..+.+...+. .....+.. +.+...|-.+... ..+.|+ |+||.
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~---~~~~~~A~--------Ga~~i~~~~wr~~---~~g~E~~~~g~~ 350 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRL---WSWQAIAH--------GADGILFWQWRQS---RFGAEQFHGGLV 350 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHH---HHHHHHHT--------T-S-EEEC-SB-----SSSTTTTS--SB
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHH---HHHHHHHH--------hCCeeEeeeccCC---CCCchhhhcccC
Confidence 57899999998 3 111111 22233333332 12233321 2333444433222 145677 99999
Q ss_pred cCCC
Q 047283 89 APDK 92 (101)
Q Consensus 89 ~~d~ 92 (101)
+.||
T Consensus 351 ~~dg 354 (374)
T PF02449_consen 351 DHDG 354 (374)
T ss_dssp -TTS
T ss_pred CccC
Confidence 9999
No 26
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=54.43 E-value=21 Score=29.72 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCC---CCC----CCcCCceEe
Q 047283 15 SLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKD---KQG----AEIERHWGL 87 (101)
Q Consensus 15 ~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~---k~~----~~~E~~~Gl 87 (101)
-+||++-|.|.|++-.. ++.+.|+-.+.-.+.. +.+.-++.+|++-- ... ..-|-.|||
T Consensus 236 ~~pV~leefGfsta~g~------e~s~ayfiw~~lal~~--------ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgi 301 (587)
T COG3934 236 WQPVNLEEFGFSTAFGQ------ENSPAYFIWIRLALDT--------GGDGALIWCLSDFHLGSDDSEYTWGPMELEFGI 301 (587)
T ss_pred cceeeccccCCcccccc------cccchhhhhhhhHHhh--------cCCceEEEEecCCccCCCCCCCccccccceeee
Confidence 38999999999997433 2222332222222221 12223444444322 111 256888999
Q ss_pred ecCCCCeeeee
Q 047283 88 FAPDKQSKYQV 98 (101)
Q Consensus 88 ~~~d~~~K~~~ 98 (101)
.+.|+.+|+..
T Consensus 302 Iradgpek~~a 312 (587)
T COG3934 302 IRADGPEKIDA 312 (587)
T ss_pred ecCCCchhhhH
Confidence 99999999853
No 27
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=52.41 E-value=21 Score=31.67 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCC-----------CCC-
Q 047283 13 GGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQ-----------GAE- 80 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~-----------~~~- 80 (101)
.+++|++++|.|- ..|+. +.+.+.|+.. +..- | .-+..|+-+.+|..-.. |++
T Consensus 503 ~~~kP~i~~Ey~h-amgn~-----~g~~~~yw~~-~~~~----p----~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~ 567 (1021)
T PRK10340 503 PHPKPRILCEYAH-AMGNG-----PGGLTEYQNV-FYKH----D----CIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDY 567 (1021)
T ss_pred CCCCcEEEEchHh-ccCCC-----CCCHHHHHHH-HHhC----C----ceeEEeeeecCcccccccCCCCCEEEEECCCC
Confidence 3579999999993 33332 2223556532 2221 2 13456888888853321 111
Q ss_pred -----cCCce--EeecCCCCeeeee
Q 047283 81 -----IERHW--GLFAPDKQSKYQV 98 (101)
Q Consensus 81 -----~E~~~--Gl~~~d~~~K~~~ 98 (101)
..... ||+++||+||..+
T Consensus 568 g~~p~~~~f~~~Glv~~dr~p~p~~ 592 (1021)
T PRK10340 568 GDYPNNYNFCIDGLIYPDQTPGPGL 592 (1021)
T ss_pred CCCCCCcCcccceeECCCCCCChhH
Confidence 11223 9999999999754
No 28
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=49.85 E-value=12 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCcEEEcccccCCCCCC----C-----------------CCCCHHHHHHHHHHHHHHHh
Q 047283 15 SLDIVISESGWPTAGGD----G-----------------ALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 15 ~~~i~itEtGWPs~g~~----~-----------------~~as~~na~~y~~~~~~~~~ 52 (101)
.|||+.||.|.|+-... + ..-..--|++|++.++..-.
T Consensus 206 sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~ 264 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWD 264 (299)
T ss_pred CcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 69999999999984421 1 01122347888888887664
No 29
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=49.33 E-value=80 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=24.3
Q ss_pred cCCCCCcEEEcccccCCCCCC----CCCCCHHHHHHHHHHHHHHHh
Q 047283 11 AGGGSLDIVISESGWPTAGGD----GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 11 ~g~~~~~i~itEtGWPs~g~~----~~~as~~na~~y~~~~~~~~~ 52 (101)
+++++.+|..+ |||.|.. ....+.......+..++..+.
T Consensus 45 ~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 45 LGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred hCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35777666665 9999975 123344455556666666664
No 30
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=46.84 E-value=65 Score=22.88 Aligned_cols=49 Identities=10% Similarity=0.136 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCCcEEEcc-cccCCCCCC-CCCCCHHHHHHHHHHHHHHHh
Q 047283 3 ATYAALEKAGGGSLDIVISE-SGWPTAGGD-GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 3 a~~~al~~~g~~~~~i~itE-tGWPs~g~~-~~~as~~na~~y~~~~~~~~~ 52 (101)
.++..|. .++|++||++.| .++|..--. ....+.+.....++..+..+.
T Consensus 82 ~fv~~iR-~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 82 GFVKTIR-EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp HHHHHHH-TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 369999999999 555555322 334667777777777777774
No 31
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=45.06 E-value=65 Score=24.13 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHHcCCCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHHHHHHHh
Q 047283 6 AALEKAGGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 6 ~al~~~g~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~~~~~~~ 52 (101)
.+|.+. .++++|+|+=-||...... ..+.++++.++|.++++..+.
T Consensus 58 ~~~k~~-~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~ 105 (299)
T cd02879 58 ETVKRK-NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVAR 105 (299)
T ss_pred HHHHHh-CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHH
Confidence 344443 6889999998889764322 345788889999999998885
No 32
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=44.58 E-value=1e+02 Score=21.08 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=33.5
Q ss_pred HHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 6 AALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 6 ~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
.++.+.. ++++|+++=-||-.........++++.++|.++++..+.
T Consensus 56 ~~l~~~~-~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 101 (210)
T cd00598 56 EELASKK-PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLK 101 (210)
T ss_pred HHHHHhC-CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 3444433 789999999998865543234778888889999998885
No 33
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=37.95 E-value=7.2 Score=28.96 Aligned_cols=17 Identities=29% Similarity=0.133 Sum_probs=12.8
Q ss_pred CCCCCcEEEcccccCCC
Q 047283 12 GGGSLDIVISESGWPTA 28 (101)
Q Consensus 12 g~~~~~i~itEtGWPs~ 28 (101)
...++|++++|.|-.+.
T Consensus 195 ~~~~kP~i~sEyg~~~~ 211 (298)
T PF02836_consen 195 KYPDKPIIISEYGADAY 211 (298)
T ss_dssp HHCTS-EEEEEESEBBS
T ss_pred ccCCCCeEehhcccccc
Confidence 35789999999997654
No 34
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=37.22 E-value=77 Score=20.81 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=25.8
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCC
Q 047283 22 ESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKK 58 (101)
Q Consensus 22 EtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~ 58 (101)
|.|=|-.|.+ +-+|.++|-.-+++++.....+||++
T Consensus 48 ~F~dp~~G~p-AF~s~~QQ~~mlq~~l~k~~~~t~L~ 83 (120)
T PRK15321 48 AFKDPNSGDS-AFVSFEQQTAMLQNMLAKVEPGTHLY 83 (120)
T ss_pred HhCCCCCCCc-ccccHHHHHHHHHHHHHhcCCCchHH
Confidence 4455666665 34788999888888888887666654
No 35
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=35.32 E-value=1.6e+02 Score=24.22 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=41.4
Q ss_pred HHHHHHHHc--CCCCCcEEEcccccCCCCCCC-CCCCHHHHHHHHHHHH----HHHhhCCCCCCCCCceEE-EEEeecCC
Q 047283 3 ATYAALEKA--GGGSLDIVISESGWPTAGGDG-ALTNVDNARTYNNNLI----QHVKQGSPKKPDRPIETY-IFAMFDEK 74 (101)
Q Consensus 3 a~~~al~~~--g~~~~~i~itEtGWPs~g~~~-~~as~~na~~y~~~~~----~~~~~gtp~~~~~~~~~~-~f~~fDe~ 74 (101)
.++..|.++ .+. +||+|||-|-=-..... ..-.-+-.-.|++.=+ +.+..| ..+..| .-++.| .
T Consensus 342 GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dG------v~v~GY~~Ws~iD-~ 413 (460)
T COG2723 342 GLYDILEKLYERYG-IPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDG------VDVRGYFAWSLID-N 413 (460)
T ss_pred HHHHHHHHHHHHhC-CCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcC------CCcccceeccccc-c
Confidence 355556554 255 99999999853332211 0012233344544433 333343 233334 444555 4
Q ss_pred CCCCCCcCCceEeecCC
Q 047283 75 DKQGAEIERHWGLFAPD 91 (101)
Q Consensus 75 ~k~~~~~E~~~Gl~~~d 91 (101)
|.-.....+.||++.-|
T Consensus 414 ~sw~~gy~kRYGli~VD 430 (460)
T COG2723 414 YSWANGYKKRYGLVYVD 430 (460)
T ss_pred cchhhccccccccEEEc
Confidence 44323489999998744
No 36
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=34.72 E-value=1.2e+02 Score=22.83 Aligned_cols=40 Identities=20% Similarity=0.461 Sum_probs=31.7
Q ss_pred CCCCcEEEcccccCCCCCC-CCCCCHHHHHHHHHHHHHHHh
Q 047283 13 GGSLDIVISESGWPTAGGD-GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~-~~~as~~na~~y~~~~~~~~~ 52 (101)
.++++|+|+=-||-..... ....+.++.++|.++++..++
T Consensus 82 ~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~ 122 (322)
T cd06548 82 NPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIR 122 (322)
T ss_pred CCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHH
Confidence 6789999999999754333 345788888999999999886
No 37
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=30.87 E-value=74 Score=28.43 Aligned_cols=71 Identities=21% Similarity=0.437 Sum_probs=42.1
Q ss_pred CCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCC-----------CCCc
Q 047283 13 GGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQ-----------GAEI 81 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~-----------~~~~ 81 (101)
.+++|++++|-|-- .|+ ++-+-+.|+..+-+. | .-...|+-+..|+.-.. |++.
T Consensus 529 ~~~kP~i~cEY~Ha-mgn-----~~g~l~~yw~~~~~~-----~----~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDf 593 (1027)
T PRK09525 529 GETRPLILCEYAHA-MGN-----SLGGFAKYWQAFRQY-----P----RLQGGFIWDWVDQGLTKYDENGNPWWAYGGDF 593 (1027)
T ss_pred CCCCCEEEEechhc-ccC-----cCccHHHHHHHHhcC-----C----CeeEEeeEeccCcceeeECCCCCEEEEECCcC
Confidence 35699999999942 222 233567776544321 1 12445788877766521 1111
Q ss_pred -----CCce---EeecCCCCeeeee
Q 047283 82 -----ERHW---GLFAPDKQSKYQV 98 (101)
Q Consensus 82 -----E~~~---Gl~~~d~~~K~~~ 98 (101)
..+| ||..+|++|+..+
T Consensus 594 gd~p~d~nFc~dGlv~~dR~p~p~~ 618 (1027)
T PRK09525 594 GDTPNDRQFCMNGLVFPDRTPHPAL 618 (1027)
T ss_pred CCCCCCCCceeceeECCCCCCCccH
Confidence 1122 8999999998864
No 38
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.79 E-value=1.6e+02 Score=21.27 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 13 GGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
.++++|+++=-||-.........++++++.|.++++..+.
T Consensus 57 ~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~ 96 (253)
T cd06545 57 AHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVV 96 (253)
T ss_pred hCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHH
Confidence 3579999886677543222345788888889999988885
No 39
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=29.12 E-value=1.5e+02 Score=22.09 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=32.5
Q ss_pred HHHHHcCCCCCcEEEcccccCCCCCC-CCCCCHHHHHHHHHHHHHHHh
Q 047283 6 AALEKAGGGSLDIVISESGWPTAGGD-GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 6 ~al~~~g~~~~~i~itEtGWPs~g~~-~~~as~~na~~y~~~~~~~~~ 52 (101)
.+|.+. .++++|+++=-||-..... ....++++.+.|.++++..+.
T Consensus 58 ~~l~~~-~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~ 104 (334)
T smart00636 58 KALKKK-NPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLK 104 (334)
T ss_pred HHHHHh-CCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHHHHHHHH
Confidence 344444 4789999998888652222 334667888889999999885
No 40
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=28.36 E-value=67 Score=20.59 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCCCcEEEcccccC
Q 047283 4 TYAALEKAGGGSLDIVISESGWP 26 (101)
Q Consensus 4 ~~~al~~~g~~~~~i~itEtGWP 26 (101)
++.||| .|..+..|+.--+||=
T Consensus 49 i~~ALE-~gd~~~~VvFEKvGWG 70 (92)
T PF10330_consen 49 IMAALE-GGDKDGDVVFEKVGWG 70 (92)
T ss_pred HHHHHh-cCCCCCCEEEEEeccc
Confidence 678898 5788899999999993
No 41
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=27.89 E-value=2.2e+02 Score=20.91 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=32.0
Q ss_pred HHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 5 YAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 5 ~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
...+.++-.++++|+|+==||-..+-....++.++.++|++.++..+.
T Consensus 62 ~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~ 109 (256)
T cd06546 62 WTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIR 109 (256)
T ss_pred HHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 344544456899999988888643212223677788888888877664
No 42
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.88 E-value=59 Score=24.18 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCcEEEcccc---cCCC
Q 047283 4 TYAALEKAGGGSLDIVISESG---WPTA 28 (101)
Q Consensus 4 ~~~al~~~g~~~~~i~itEtG---WPs~ 28 (101)
...||..+|.+++||..+|-| ||.+
T Consensus 62 A~~AL~~lg~~~~Pi~~G~~raPlWP~g 89 (228)
T COG2977 62 ARQALRELGVADVPILRGEDRAPLWPAG 89 (228)
T ss_pred HHHHHHHhCCCCCCcccCCCCCCCCCCc
Confidence 457888899999999999999 8874
No 43
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=26.22 E-value=1.4e+02 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 14 GSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 14 ~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
++.-+.|+|+|-+..... ...+.|+.++...+..+.
T Consensus 89 ~~~~~aIGEiGLD~~~~~---~~~~~Q~~vf~~ql~lA~ 124 (258)
T PRK11449 89 PAKVVAVGEIGLDLFGDD---PQFERQQWLLDEQLKLAK 124 (258)
T ss_pred CCCEEEEEecccCCCCCC---CCHHHHHHHHHHHHHHHH
Confidence 335678999999975332 356778888888888774
No 44
>PRK10425 DNase TatD; Provisional
Probab=24.89 E-value=2.9e+02 Score=20.36 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 5 YAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 5 ~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
...|..+--...-+.|+|+|-...-.. .+.+.|+..++..+..+.
T Consensus 74 ~~~l~~~~~~~~~vaIGEiGLDy~~~~---~~~~~Q~~vF~~ql~lA~ 118 (258)
T PRK10425 74 EEAIIELAAQPEVVAIGECGLDFNRNF---STPEEQERAFVAQLAIAA 118 (258)
T ss_pred HHHHHHhccCCCEEEEeeeeeccccCC---CCHHHHHHHHHHHHHHHH
Confidence 444554422233467999998875322 356778888888888774
No 45
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=24.31 E-value=2.7e+02 Score=20.90 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEeecCCCCC
Q 047283 4 TYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPDRPIETYIFAMFDEKDKQ 77 (101)
Q Consensus 4 ~~~al~~~g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~f~~fDe~~k~ 77 (101)
+...+...-.++++|+|+==||-.... ..+.+.++.|.+.+......+.......++..+.|.=+|=+|.-
T Consensus 61 ~~~dI~~cq~~G~KVlLSIGG~~~~~~---~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~ 131 (280)
T cd02877 61 LGADIKHCQSKGKKVLLSIGGAGGSYS---LSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEH 131 (280)
T ss_pred HHHHHHHHHHCCCEEEEEccCCCCCcC---CCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEeccc
Confidence 444555445678999998778854322 26888888888887776642221000123445677777777754
No 46
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.99 E-value=23 Score=22.45 Aligned_cols=16 Identities=19% Similarity=0.692 Sum_probs=13.8
Q ss_pred CCCCcEEEcccccCCC
Q 047283 13 GGSLDIVISESGWPTA 28 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~ 28 (101)
-.++|=+++-||||-.
T Consensus 22 ~~nVP~lm~~TGwPRR 37 (95)
T COG4519 22 TANVPELMAATGWPRR 37 (95)
T ss_pred cCChHHHHHHcCCchh
Confidence 6789999999999974
No 47
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=23.51 E-value=11 Score=24.07 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=11.0
Q ss_pred HHHHHcCCCCCcEEEcccccCC
Q 047283 6 AALEKAGGGSLDIVISESGWPT 27 (101)
Q Consensus 6 ~al~~~g~~~~~i~itEtGWPs 27 (101)
.+|+. +-.++|=++.+||||-
T Consensus 15 ~li~~-~~~nvp~L~~~TGmPr 35 (90)
T PF09904_consen 15 YLIDS-GERNVPALMEATGMPR 35 (90)
T ss_dssp HHHHH-S-B-HHHHHHHH---H
T ss_pred HHHhc-CCccHHHHHHHhCCCH
Confidence 34444 3448888999999995
No 48
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=22.98 E-value=55 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=12.1
Q ss_pred CCCCcEEEcccccCCCCCC
Q 047283 13 GGSLDIVISESGWPTAGGD 31 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~ 31 (101)
.+++++||+|||=...|+.
T Consensus 283 ~p~~~~WlGEtg~Ay~gG~ 301 (319)
T PF03662_consen 283 GPGKPVWLGETGSAYNGGA 301 (319)
T ss_dssp HH---EEEEEEEEESTT--
T ss_pred CCCCCeEEeCcccccCCCC
Confidence 5679999999998886654
No 49
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=22.89 E-value=2.2e+02 Score=20.51 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHHc--CCCCCcEEEcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 6 AALEKA--GGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 6 ~al~~~--g~~~~~i~itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
..|+.+ -...+=+.|+|+|=+..-... .+.+.|...++..+..+.
T Consensus 75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~--~~~~~Q~~vF~~ql~lA~ 121 (255)
T PF01026_consen 75 EELEELINLNRPKVVAIGEIGLDYYWRNE--EDKEVQEEVFERQLELAK 121 (255)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTTTSS--SGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccceeeeeeccCcccccC--CcHHHHHHHHHHHHHHHH
Confidence 444444 345566679999998832222 577888888888887764
No 50
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=22.48 E-value=33 Score=22.99 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=9.5
Q ss_pred EEcccccCCCCCC
Q 047283 19 VISESGWPTAGGD 31 (101)
Q Consensus 19 ~itEtGWPs~g~~ 31 (101)
+-+-+||||=-.+
T Consensus 50 fdSg~GWPSF~~~ 62 (119)
T PRK05508 50 FKSGCGWPSFDDE 62 (119)
T ss_pred ccCCCCCcccCcc
Confidence 4567899997654
No 51
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.10 E-value=2.1e+02 Score=21.71 Aligned_cols=40 Identities=15% Similarity=0.393 Sum_probs=30.3
Q ss_pred CCCCcEEEcccccCCCCCC--CCCCCHHHHHHHHHHHHHHHh
Q 047283 13 GGSLDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 13 ~~~~~i~itEtGWPs~g~~--~~~as~~na~~y~~~~~~~~~ 52 (101)
.++++|+|+=-||...... ....++++.++|.++++..+.
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~ 109 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLR 109 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHH
Confidence 5789999987788754322 334678888899999999885
No 52
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=22.05 E-value=58 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=9.4
Q ss_pred CCcEEEcccccC
Q 047283 15 SLDIVISESGWP 26 (101)
Q Consensus 15 ~~~i~itEtGWP 26 (101)
.-|--|+|+||=
T Consensus 40 ~pPFevte~GWG 51 (84)
T PF03366_consen 40 KPPFEVTETGWG 51 (84)
T ss_dssp STTEEEEEEESS
T ss_pred CCCCEEEEeEec
Confidence 457789999993
No 53
>PRK14847 hypothetical protein; Provisional
Probab=21.83 E-value=96 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCCcEEEcccccCCCCC
Q 047283 4 TYAALEKAGGGSLDIVISESGWPTAGG 30 (101)
Q Consensus 4 ~~~al~~~g~~~~~i~itEtGWPs~g~ 30 (101)
+..+|.++|.. .| |.|+|+.+.
T Consensus 59 IA~~L~~lGVd----~I-EvG~Pa~s~ 80 (333)
T PRK14847 59 LFEQLVAVGLK----EI-EVAFPSASQ 80 (333)
T ss_pred HHHHHHHcCCC----EE-EeeCCCCCH
Confidence 45677777755 22 999999653
No 54
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=21.31 E-value=56 Score=21.81 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=9.3
Q ss_pred CCCCCcEEEcc
Q 047283 12 GGGSLDIVISE 22 (101)
Q Consensus 12 g~~~~~i~itE 22 (101)
..+++||+|||
T Consensus 7 ~~p~~pi~ItE 17 (130)
T PF12965_consen 7 DDPNIPIWITE 17 (130)
T ss_pred cCCCccEEEEe
Confidence 46789999998
No 55
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.69 E-value=98 Score=25.46 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCcEEEcccccCCC
Q 047283 3 ATYAALEKAGGGSLDIVISESGWPTA 28 (101)
Q Consensus 3 a~~~al~~~g~~~~~i~itEtGWPs~ 28 (101)
.+..+|.++|+. .| |.|||..
T Consensus 31 ~ia~~L~~~Gvd----~I-EvG~p~a 51 (524)
T PRK12344 31 RIARKLDELGVD----YI-EGGWPGS 51 (524)
T ss_pred HHHHHHHHcCCC----EE-EEcCCcC
Confidence 356778888766 23 8899974
No 56
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=20.64 E-value=93 Score=23.34 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHcCCCCCcEE--EcccccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 047283 6 AALEKAGGGSLDIV--ISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 52 (101)
Q Consensus 6 ~al~~~g~~~~~i~--itEtGWPs~g~~~~~as~~na~~y~~~~~~~~~ 52 (101)
.++.+.+ ++++|+ |+=-||....-.....+++..++|.++++..+.
T Consensus 58 ~~lk~~~-~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~~~~~ 105 (318)
T cd02876 58 EEVRKAN-KNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLVTTAK 105 (318)
T ss_pred HHHHhhC-CCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3455544 789998 654588643111345788888999999999885
No 57
>COG2161 StbD Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=20.39 E-value=1.2e+02 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHcCCCCCcEEEcccccCCC
Q 047283 7 ALEKAGGGSLDIVISESGWPTA 28 (101)
Q Consensus 7 al~~~g~~~~~i~itEtGWPs~ 28 (101)
-+.+......||+|+.-|+|..
T Consensus 18 ~~~~v~~~~~pv~It~~~~~~a 39 (86)
T COG2161 18 LKDKVESDHEPVAITNRNKPAA 39 (86)
T ss_pred HHHHhccCCCcEEEecCCCccE
Confidence 3455567789999999999954
Done!