BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047285
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 183/441 (41%), Gaps = 55/441 (12%)
Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGS--LENLRYLNLSGAKFAGMIPLQLGN 173
GKV+ L L L LDLS N G + ++ S L++L +SG K +G + +
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 195
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
NL++LD+S S + +L L+HLD+S LS D+ ++ LK
Sbjct: 196 CVNLEFLDVSSNNFST------GIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELK 247
Query: 234 VLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
+L ++ Q PPL L++L ++ L+ N+
Sbjct: 248 LLNISSNQFVGPIPPL------------------------------PLKSLQYLSLAENK 277
Query: 293 FQGQIPIGLRNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
F G+IP L +L LDL N+F P + + LE L+++ N+ G + L
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFS-QVLDTFSSCGAYA 409
+ ++ LDLS N + G++P S L L ++DLS S +FS +L
Sbjct: 338 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS----SNNFSGPILPNLCQNPKNT 392
Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXX 469
L+ L L +G + L L +L L N L G +P +LG
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
G IP L + LE L L N L + N T L W S S N L + P W+
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEI-PKWIGRL 510
Query: 530 Q-LETLQLRSCHLGPHFPSWL 549
+ L L+L + + P+ L
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 164/407 (40%), Gaps = 55/407 (13%)
Query: 112 SKLGGKVNPSLVDLK-HLIHLDLSGNDFEGIQIPKYLGSLEN-LRYLNLSGAKFAGMIPL 169
++ G++ SL +L L+ LDLS N+F G +P + +N L+ L L F G IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 170 QLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL 229
L N S L L LS ++LSG + +SL
Sbjct: 410 TLSNCSELVSLHLS-------------FNYLSGT---------------------IPSSL 435
Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS 289
SL L+ K L + +K L I +F++ + S + NL +I LS
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
+N+ G+IP + L +L L L N F+ P L L +L + N GTI +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 350 LENLTSIETLDLSGNSKL-----GGKIPTSFA------------RLCKLTSVDLSLIDLS 392
+ I ++G + G K A +L +L++ + I
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL 452
TF + G+ LD+S +SG++ ++ L L LGHN + G +P +
Sbjct: 616 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 453 GEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
G+ G IP ++ L+ L +DLSNN L+ + E+
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 110/263 (41%), Gaps = 45/263 (17%)
Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
L G++ L + +L + LS N G +IPK++G LENL L LS F+G IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 174 LSNLQYLDL----------------SGTFLSNY----------------DLH-VDSLSWL 200
+L +LDL SG +N+ + H +L
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLP------SLKVLKLTKCQLCHFPPLLSANFS 254
G+ + LS N + + ++ P S+ L ++ L + P +
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF 314
L L+L N+ S+ V LR L +DLSSN+ G+IP + LT L +DL
Sbjct: 654 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 315 NYFNSTTP--GWLSKFNDLEFLS 335
N + P G F +FL+
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLN 733
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 115 GGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL 174
GG +P+ + ++ LD+S N G IPK +GS+ L LNL +G IP ++G+L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
L LDLS L +S L ML +DLS NLS + + P K
Sbjct: 677 RGLNILDLSSNKLDGRIPQA-----MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Query: 235 LKLTKCQLCHFP 246
L LC +P
Sbjct: 732 LN--NPGLCGYP 741
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 163/395 (41%), Gaps = 49/395 (12%)
Query: 78 SNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137
+N +G +L QNP + L +E+ +N GK+ P+L + L+ L LS N
Sbjct: 375 NNFSGPILPNLCQNPKNTL----QELYLQNN----GFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL 197
G IP LGSL LR L L G IP +L + L+ L L DL +
Sbjct: 427 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-----ILDFNDLTGEIP 480
Query: 198 SWLSGLYMLEHLDLSQMNLS-KASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL 256
S LS L + LS L+ + W+ L +L +LKL+ P + SL
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 257 KALHLAINNFDNS----LFQY-----GSWVFGLRNLVFIDLSSN-----------QFQGQ 296
L L N F+ + +F+ +++ G R V+I +FQG
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
L L++ ++ + T + FL +++N L G I + ++ +
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYL 655
Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
L+L G++ + G IP L L +DLS L Q + + L +DLS
Sbjct: 656 FILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-----MLTEIDLS 709
Query: 417 ICQISGHLTNQLLQFKSLHTLELGHN-SLFG-PLP 449
+SG + ++ QF++ + +N L G PLP
Sbjct: 710 NNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLP 743
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 183/441 (41%), Gaps = 55/441 (12%)
Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGS--LENLRYLNLSGAKFAGMIPLQLGN 173
GKV+ L L L LDLS N G + ++ S L++L +SG K +G + +
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 198
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
NL++LD+S S + +L L+HLD+S LS D+ ++ LK
Sbjct: 199 CVNLEFLDVSSNNFST------GIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELK 250
Query: 234 VLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
+L ++ Q PPL L++L ++ L+ N+
Sbjct: 251 LLNISSNQFVGPIPPL------------------------------PLKSLQYLSLAENK 280
Query: 293 FQGQIPIGLRNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
F G+IP L +L LDL N+F P + + LE L+++ N+ G + L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFS-QVLDTFSSCGAYA 409
+ ++ LDLS N + G++P S L L ++DLS S +FS +L
Sbjct: 341 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS----SNNFSGPILPNLCQNPKNT 395
Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXX 469
L+ L L +G + L L +L L N L G +P +LG
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
G IP L + LE L L N L + N T L W S S N L + P W+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEI-PKWIGRL 513
Query: 530 Q-LETLQLRSCHLGPHFPSWL 549
+ L L+L + + P+ L
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 164/407 (40%), Gaps = 55/407 (13%)
Query: 112 SKLGGKVNPSLVDLK-HLIHLDLSGNDFEGIQIPKYLGSLEN-LRYLNLSGAKFAGMIPL 169
++ G++ SL +L L+ LDLS N+F G +P + +N L+ L L F G IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 170 QLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL 229
L N S L L LS ++LSG + +SL
Sbjct: 413 TLSNCSELVSLHLS-------------FNYLSGT---------------------IPSSL 438
Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS 289
SL L+ K L + +K L I +F++ + S + NL +I LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
+N+ G+IP + L +L L L N F+ P L L +L + N GTI +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 350 LENLTSIETLDLSGNSKL-----GGKIPTSFA------------RLCKLTSVDLSLIDLS 392
+ I ++G + G K A +L +L++ + I
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL 452
TF + G+ LD+S +SG++ ++ L L LGHN + G +P +
Sbjct: 619 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 453 GEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
G+ G IP ++ L+ L +DLSNN L+ + E+
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 110/263 (41%), Gaps = 45/263 (17%)
Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
L G++ L + +L + LS N G +IPK++G LENL L LS F+G IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 174 LSNLQYLDL----------------SGTFLSNY----------------DLH-VDSLSWL 200
+L +LDL SG +N+ + H +L
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLP------SLKVLKLTKCQLCHFPPLLSANFS 254
G+ + LS N + + ++ P S+ L ++ L + P +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF 314
L L+L N+ S+ V LR L +DLSSN+ G+IP + LT L +DL
Sbjct: 657 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 315 NYFNSTTP--GWLSKFNDLEFLS 335
N + P G F +FL+
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLN 736
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 115 GGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL 174
GG +P+ + ++ LD+S N G IPK +GS+ L LNL +G IP ++G+L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
L LDLS L +S L ML +DLS NLS + + P K
Sbjct: 680 RGLNILDLSSNKLDGRIPQA-----MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734
Query: 235 LKLTKCQLCHFP 246
L LC +P
Sbjct: 735 LN--NPGLCGYP 744
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 163/395 (41%), Gaps = 49/395 (12%)
Query: 78 SNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137
+N +G +L QNP + L +E+ + + GK+ P+L + L+ L LS N
Sbjct: 378 NNFSGPILPNLCQNPKNTL----QELY----LQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL 197
G IP LGSL LR L L G IP +L + L+ L L DL +
Sbjct: 430 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-----ILDFNDLTGEIP 483
Query: 198 SWLSGLYMLEHLDLSQMNLS-KASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL 256
S LS L + LS L+ + W+ L +L +LKL+ P + SL
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 257 KALHLAINNFDNS----LFQY-----GSWVFGLRNLVFIDLSSN-----------QFQGQ 296
L L N F+ + +F+ +++ G R V+I +FQG
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
L L++ ++ + T + FL +++N L G I + ++ +
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYL 658
Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
L+L G++ + G IP L L +DLS L Q + + L +DLS
Sbjct: 659 FILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-----MLTEIDLS 712
Query: 417 ICQISGHLTNQLLQFKSLHTLELGHN-SLFG-PLP 449
+SG + ++ QF++ + +N L G PLP
Sbjct: 713 NNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLP 746
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 63/324 (19%)
Query: 37 CIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCK--WAGVFCSNITG-------HVLQL 87
C +++ALL++K+DL +P+ L+SW DCC W GV C T + L
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSW-LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 88 SLQNPFS--------------YLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL 133
+L P+ Y+GG + L G + P++ L L +L +
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGG------------INNLVGPIPPAIAKLTQLHYLYI 108
Query: 134 SGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH 193
+ + G IP +L ++ L L+ S +G +P + +L NL + G +S
Sbjct: 109 THTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--I 165
Query: 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP------SLKVLKLTKCQLCHFPP 247
DS S L+ + M +S+ +T +P +L + L++ L
Sbjct: 166 PDSYGSFSKLF-------TSMTISRNR----LTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 248 LLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
+L + + + +HLA N+ L + G +NL +DL +N+ G +P GL L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 308 RHLDLRFNYFNSTTP--GWLSKFN 329
L++ FN P G L +F+
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFD 294
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 88/216 (40%), Gaps = 54/216 (25%)
Query: 276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335
++ G+ NLV G IP + LT L +L + + P +LS+ L L
Sbjct: 82 YIGGINNLV----------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 336 VAWNSLQGTI--SSVGLENLTSIETLD---LSG-------------------NSKLGGKI 371
++N+L GT+ S L NL I T D +SG ++L GKI
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 372 PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG------------------AYALESL 413
P +FA L L VDLS L D S + + + + L L
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLP 449
DL +I G L L Q K LH+L + N+L G +P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
L NL + L + G + L G IP + A+L +L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQL---------------------------- 103
Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXX 469
L ++ +SG + + L Q K+L TL+ +N+L G LPP++
Sbjct: 104 -HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 470 GFIPLSLGKLSHL-EYLDLSNNKLNASLSEIHFVNL 504
G IP S G S L + +S N+L + F NL
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL 197
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
GN F + +P +L +L+LS G F G ++L+YLDLS ++
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS------FNG 384
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
+ S GL LEHLD NL + S++ + L + L + H ++ N
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 438
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
SSL+ L +A N+F + LRNL F+DLS Q + P +L+SL
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLE 332
+ L++ N S G + L+
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQ 521
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 47/283 (16%)
Query: 158 LSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216
L+G + ++ + N NL+ D S L N + L++L Y+ + +DL L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNC-L 281
Query: 217 SKASDWLLVTNSLPSLKV---------LKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
+ S + LV+ ++ +K L+L C+ FP L SLK L N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG 338
Query: 268 NSLFQYGSWVFGLRNLVFIDLSSN--QFQGQIPIGLRNLTSLRHLDLRFN---------- 315
N+ + L +L F+DLS N F+G TSL++LDL FN
Sbjct: 339 NAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 316 --------YFNSTTPGWLSKFN------DLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
F + +S+F+ +L +L ++ + + + L+S+E L +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKM 452
Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
+GNS +P F L LT +DLS L Q ++ SS
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
L+ L HLD ++ + + SL NL YL++S LS+L+ L ++G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 185 -TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
+F N+ + + L L LDLSQ L + S NSL SL+VL + QL
Sbjct: 455 NSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLK 507
Query: 244 HFPPLLSANFSSLKALHLAINNFDNS 269
P + +SL+ + L N +D S
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCS 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
GN F + +P +L +L+LS G F G ++L+YLDLS ++
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS------FNG 384
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
+ S GL LEHLD NL + S++ + L + L + H ++ N
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 438
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
SSL+ L +A N+F + LRNL F+DLS Q + P +L+SL
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
+ L++ N F S N L+ L + N LQ SS+ NLT
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 47/272 (17%)
Query: 158 LSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216
L+G + ++ + N NL+ D S L N + L++L Y+ + +DL L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNC-L 281
Query: 217 SKASDWLLVTNSLPSLKV---------LKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
+ S + LV+ ++ +K L+L C+ FP L SLK L N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG 338
Query: 268 NSLFQYGSWVFGLRNLVFIDLSSN--QFQGQIPIGLRNLTSLRHLDLRFN---------- 315
N+ + L +L F+DLS N F+G TSL++LDL FN
Sbjct: 339 NAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 316 --------YFNSTTPGWLSKFN------DLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
F + +S+F+ +L +L ++ + + + L+S+E L +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKM 452
Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ 393
+GNS +P F L LT +DLS L Q
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
L+ L HLD ++ + + SL NL YL++S LS+L+ L ++G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 185 -TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
+F N+ + + L L LDLSQ L + S NSL SL+VL ++
Sbjct: 455 NSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFF 507
Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF 293
+SL+ L ++N+ S Q +L F++L+ N F
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDF 555
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 36/235 (15%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
GN F + +P +L +L+LS G F G +L+YLDLS ++
Sbjct: 362 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS------FNG 408
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
+ S GL LEHLD NL + S++ + L + L + H ++ N
Sbjct: 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 462
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
SSL+ L +A N+F + LRNL F+DLS Q + P +L+SL
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
+ L++ N F S N L+ L + N LQ SS+ NLT
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 121/325 (37%), Gaps = 76/325 (23%)
Query: 158 LSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216
L+G + ++ + N NL+ D S L N + L++L Y+ +DL L
Sbjct: 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDGIIDLFNC-L 305
Query: 217 SKASDWLLVTNSLPSLKV---------LKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
+ S + LV+ ++ +K L+L C+ FP L SLK L N
Sbjct: 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG 362
Query: 268 NSLFQYGSWVFGLRNLVFIDLSSN--QFQGQIPIGLRNLTSLRHLDLRFN---------- 315
N+ + L +L F+DLS N F+G SL++LDL FN
Sbjct: 363 NAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL 417
Query: 316 --------YFNSTTPGWLSKFN------DLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
F + +S+F+ +L +L ++ + + + L+S+E L +
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKM 476
Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS 421
+GNS +P F L LT LDLS CQ+
Sbjct: 477 AGNSFQENFLPDIFTELRNLTF-----------------------------LDLSQCQLE 507
Query: 422 GHLTNQLLQFKSLHTLELGHNSLFG 446
SL L + HN+ F
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNFFS 532
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
L+ L HLD ++ + + SL NL YL++S LS+L+ L ++G
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 185 -TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
+F N+ + + L L LDLSQ L + S NSL SL+VL ++
Sbjct: 479 NSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFF 531
Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF 293
+SL+ L ++N+ S Q +L F++L+ N F
Sbjct: 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDF 579
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 161/374 (43%), Gaps = 27/374 (7%)
Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
+LG+ E++ ++S A F G+ + +++ ++L + +++ ++ SGL
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEM------SVESINLQKHYF--FNISSNTFHCFSGL-- 280
Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
+ LDL+ +LS+ L+ L +LK L L+ + + + ++NF SL HL+I
Sbjct: 281 -QELDLTATHLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLT--HLSIKG 334
Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPG 323
L + L NL +DLS + + + LRNL+ L+ L+L +N S
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 324 WLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS 383
+ LE L +A+ L+ + +NL ++ L+LS +S L F L L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFDGLPALQH 453
Query: 384 VDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS 443
++L + Q ++ + G LE L LS C +S + K ++ ++L HN
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGR--LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 444 LFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN 503
L AL +P L LS ++L N L+ + S I+F
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYF-- 568
Query: 504 LTKLTWFSASGNSL 517
L W+ + L
Sbjct: 569 ---LEWYKENMQKL 579
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 115/445 (25%), Positives = 177/445 (39%), Gaps = 49/445 (11%)
Query: 131 LDLSGNDFEGIQ----IPKYLGSLENLRYLNL----SGAKFAGMIPLQLGNLSNL--QYL 180
L+ +GND +GI+ I K SL+ LNL G + + + L LG + QYL
Sbjct: 183 LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYL 242
Query: 181 DLSGTFLSNYDLHVDSL------------SWLSGLYMLEHLDLSQMNLSKASDWLLVTNS 228
S TF D+ V+S+ S ++ LDL+ +L+ + NS
Sbjct: 243 T-SATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNS 301
Query: 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFID 287
L L + + QLC +A+F SL+ L++ N G+ L NL +D
Sbjct: 302 LKKLVLNANSFDQLCQIN---AASFPSLRDLYIKGNMRK---LDLGTRCLEKLENLQKLD 355
Query: 288 LSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
LS + + + L+NL L++L+L +N + LE L VA+ L
Sbjct: 356 LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKA 415
Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL---SLIDLSQDFSQVLDTF 402
+NL + L+LS + L A L L ++L S D S + +L
Sbjct: 416 PHSPFQNLHLLRVLNLS-HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV 474
Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXX 462
S LE L LS C + ++++ L+L HNSL G AL
Sbjct: 475 GS-----LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNM 529
Query: 463 XXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522
P L LS ++LS+N L+ + S IHF+ TW+ + + L
Sbjct: 530 ASNNIRI-IPPHLLPALSQQSIINLSHNPLDCTCSNIHFI-----TWYKENLHKLEDSEE 583
Query: 523 PNWVPPFQLETLQLRSC--HLGPHF 545
P L ++L H G H
Sbjct: 584 TTCANPPSLRGVKLSDVKLHCGTHM 608
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPK-----YLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
L L+ L HL+L GN F+ I K +GSLE L LS + L N
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE---ILILSSCNLLSIDQQAFHGLRN 500
Query: 177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
+ +LDLS L+ + D+LS L GLY+
Sbjct: 501 VNHLDLSHNSLTGDSM--DALSHLKGLYL 527
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 150 LENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLE 207
L L L+LS G F G ++L+YLDLS ++ + S GL LE
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLE 104
Query: 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN-----FSSLKALHLA 262
HLD NL + S++ + L + L + H ++ N SSL+ L +A
Sbjct: 105 HLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP 322
N+F + LRNL F+DLS Q + P +L+SL+ L++ N F S
Sbjct: 159 GNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 323 GWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
N L+ L + N LQ SS+ NLT
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 278 FGLRNLVFIDLSSNQFQGQIPIG--LRNLTSLRHLDLRFNYFNSTTPGWLSKF---NDLE 332
FG +L ++DLS F G I + L L HLD F + N S F +L
Sbjct: 75 FGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLI 129
Query: 333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS 392
+L ++ + + + L+S+E L ++GNS +P F L LT +DLS L
Sbjct: 130 YLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 393 Q 393
Q
Sbjct: 189 Q 189
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
L+ L HLD ++ + + SL NL YL++S LS+L+ L ++G
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 185 -TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
+F N+ + + L L LDLSQ L + S NSL SL+VL ++
Sbjct: 160 NSFQENFLPDI-----FTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFF 212
Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF 293
+SL+ L ++N+ S Q +L F++L+ N F
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDF 260
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 41/196 (20%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF---GLRNLVFIDLSSN 291
L + +CQL FP L + LK+L L +N GS F L +L ++DLS N
Sbjct: 312 LSIIRCQLKQFPTL---DLPFLKSLTLTMNK--------GSISFKKVALPSLSYLDLSRN 360
Query: 292 --QFQGQIPIGLRNLTSLRHLDLRFN------------------YFNSTTPGWLSKFN-- 329
F G SLRHLDL FN F +T +++F+
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 330 ----DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
L +L +++ + + + L LTS+ TL ++GNS + FA LT +D
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 386 LSLIDLSQDFSQVLDT 401
LS L Q V DT
Sbjct: 480 LSKCQLEQISWGVFDT 495
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
L ++DLS + + L L +L L N S +PG S LE L VA +
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKL 116
Query: 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
++ S + L +++ L+++ N K+P F+ L L VDLS
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
++P NLT+L H+DL +NY + T NDL+FL
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTIT------VNDLQFL 176
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 41/196 (20%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF---GLRNLVFIDLSSN 291
L + +CQL FP L + LK+L L +N GS F L +L ++DLS N
Sbjct: 307 LSIIRCQLKQFPTL---DLPFLKSLTLTMNK--------GSISFKKVALPSLSYLDLSRN 355
Query: 292 --QFQGQIPIGLRNLTSLRHLDLRFN------------------YFNSTTPGWLSKFN-- 329
F G SLRHLDL FN F +T +++F+
Sbjct: 356 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 415
Query: 330 ----DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
L +L +++ + + + L LTS+ TL ++GNS + FA LT +D
Sbjct: 416 LSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 474
Query: 386 LSLIDLSQDFSQVLDT 401
LS L Q V DT
Sbjct: 475 LSKCQLEQISWGVFDT 490
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
L ++DLS + + L L +L L N S +PG S LE L VA +
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKL 111
Query: 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
++ S + L +++ L+++ N K+P F+ L L VDLS
Sbjct: 112 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 156
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
++P NLT+L H+DL +NY + T NDL+FL
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYIQTIT------VNDLQFL 171
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 81 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLS--------------NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
LS +S N+ V L L+ L LE LD+S +K SD + V
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS---NKVSD-ISVLA 191
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
L +L+ L T Q+ PL ++L L L N L G+ L NL +D
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 244
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
L++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
Query: 348 VGLENLT 354
L+NLT
Sbjct: 301 SNLKNLT 307
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 81 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLS--------------NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
LS +S N+ V L L+ L LE LD+S +K SD + V
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS---NKVSD-ISVLA 191
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
L +L+ L T Q+ PL ++L L L N L G+ L NL +D
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 244
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
L++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
Query: 348 VGLENLT 354
L+NLT
Sbjct: 301 SNLKNLT 307
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 85 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 139
Query: 182 LSGTFLSN--------------YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
LS +S+ + V L L+ L LE LD+S +S S +TN
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 199
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
L+ L T Q+ PL ++L L L N L G+ L NL +D
Sbjct: 200 ----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 248
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
L++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 304
Query: 348 VGLENLT 354
L+NLT
Sbjct: 305 SNLKNLT 311
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 86 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 140
Query: 182 LSGTFLSN--------------YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
LS +S+ + V L L+ L LE LD+S +S S +TN
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 200
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
L+ L T Q+ PL ++L L L N L G+ L NL +D
Sbjct: 201 ----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 249
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
L++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 305
Query: 348 VGLENLT 354
L+NLT
Sbjct: 306 SNLKNLT 312
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 81 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
LS +S+ V L L+ L LE LD+S +S S +T
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
N L+ L T Q+ PL ++L L L N L G+ L NL +
Sbjct: 196 N----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
DL++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
L+NLT
Sbjct: 301 ISNLKNLT 308
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
L NL + L +NQ P L+NLT+L L+L N + + LS L+ LS +
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSS 160
Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
N + L NLT++E LD+S N K+ + + L KLT+++ SLI + S +
Sbjct: 161 NQVTDL---KPLANLTTLERLDISSN-----KV-SDISVLAKLTNLE-SLIATNNQISDI 210
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 81 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
LS +S+ V L L+ L LE LD+S +S S +T
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
N L+ L T Q+ PL ++L L L N L G+ L NL +
Sbjct: 196 N----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
DL++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
L+NLT
Sbjct: 301 ISNLKNLT 308
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 111/277 (40%), Gaps = 58/277 (20%)
Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
L NL + L +NQ P L+NLT+L L+L N + + LS L+ LS +
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSS 160
Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
N + L NLT++E LD+S N K+ + + L KLT+++ SLI + S +
Sbjct: 161 NQVTDL---KPLANLTTLERLDISSN-----KV-SDISVLAKLTNLE-SLIATNNQISDI 210
Query: 399 --------LDTFS-------SCGAYA----LESLDLSICQISGHLTNQLLQFKSLHTLEL 439
LD S G A L LDL+ QIS L L L+L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKL 268
Query: 440 GHNSLFGPLPPA---------LGEXXXXXXXXXXXXXXXGFIPL---------SLGKLSH 481
G N + P A L E ++ L + L+
Sbjct: 269 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 482 LEYLDLSNNKLNASLSEI-HFVNLTKLTWFSASGNSL 517
L+ L SNNK +S++ NLT + W SA N +
Sbjct: 329 LQRLFFSNNK----VSDVSSLANLTNINWLSAGHNQI 361
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 105/248 (42%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
L +L L+ + ++ N I L +L NL L L + + PL+ NL+NL L+
Sbjct: 81 LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
LS +S+ V L L+ L LE LD+S +K SD + V
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS---NKVSD-ISVL 191
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
L +L+ L T Q+ PL ++L L L N L G+ L NL +
Sbjct: 192 AKLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
DL++NQ P L LT L L L N ++ +P L+ L L + N L+
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
L+NLT
Sbjct: 301 ISNLKNLT 308
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVA 337
L NL + L +NQ P L+NLT+L L+L N + + L+ L F S
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQ 162
Query: 338 WNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQ 397
L+ L NLT++E LD+S N K+ + + L KLT+++ SLI + S
Sbjct: 163 VTDLKP------LANLTTLERLDISSN-----KV-SDISVLAKLTNLE-SLIATNNQISD 209
Query: 398 V 398
+
Sbjct: 210 I 210
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG-LRNLVFI 286
L +L L LT QL P + ++LK L L +N L VF L NL ++
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV----ENQLQSLPDGVFDKLTNLTYL 138
Query: 287 DLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
+L+ NQ Q +P G+ LT+L LDL +N S G K L+ L + N L+
Sbjct: 139 NLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 346 SSVGLENLTSIETLDLSGN 364
V + LTS++ + L N
Sbjct: 198 DGV-FDRLTSLQYIWLHDN 215
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 137 DFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHV-D 195
D + +Q +YL N+RYL L G K + L+ L+NL YL L+G L + V D
Sbjct: 52 DIKSVQGIQYL---PNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLPNGVFD 106
Query: 196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSS 255
L+ L L ++E+ L D V + L +L L L QL P + ++
Sbjct: 107 KLTNLKELVLVEN------QLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 256 LKALHLAINNFDNSLFQYGSWVFG-LRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLR 313
L L L+ N L VF L L + L NQ + +P G+ LTSL+++ L
Sbjct: 159 LTELDLSYN----QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 213
Query: 314 FNYFNSTTPG------WLSK 327
N ++ T PG W++K
Sbjct: 214 DNPWDCTCPGIRYLSEWINK 233
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL 174
N S + L HLDLS NDF+ + + K G+L L +L LS AKF + L + +L
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLR 313
S L+ L L+ N + + ++F ++L ++D+S N+ Q I + SLRHLDL
Sbjct: 76 SELRVLRLSHNRIRS--LDFHVFLFN-QDLEYLDVSHNRLQN---ISCCPMASLRHLDLS 129
Query: 314 FNYFN 318
FN F+
Sbjct: 130 FNDFD 134
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 113/274 (41%), Gaps = 42/274 (15%)
Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
+L LDLS N+ + + L +LRYL+L + P LSNL+YL L F
Sbjct: 249 NLTQLDLSYNNLHDVGNGSF-SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 187 L-------SNYDLHVDSLSWL---------------------SGLYMLEHLDLSQ--MNL 216
S+ ++ S WL +GL L++L LS+ +L
Sbjct: 308 TKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSL 367
Query: 217 SKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFS---SLKALHLAINNFDNSLFQY 273
++ V+ + L L LTK H + + FS L+ L L +N + L
Sbjct: 368 QTLTNETFVSLAHSPLLTLNLTK---NHISKIANGTFSWLGQLRILDLGLNEIEQKL--S 422
Query: 274 GSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNST--TPGWLSKFNDL 331
G GLRN+ I LS N++ + SL+ L LR + +P +L
Sbjct: 423 GQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNL 482
Query: 332 EFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365
L ++ N++ I+ LE L ++E LD N+
Sbjct: 483 TILDLSNNNI-ANINEDLLEGLENLEILDFQHNN 515
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL-----SNLQY 179
LK L HL++ ND GI+ + G L NL+YL+LS + F + L S L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS-FTSLRTLTNETFVSLAHSPLHI 385
Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTN----SLPSLKV 234
L+L+ +S + D+ SWL L +L+ L L+++ +W + N L K
Sbjct: 386 LNLTKNKIS--KIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
L+LT+ P L L +A+ N D+S + LRNL +DLS+N
Sbjct: 443 LQLTRNSFALVPSL-----QRLMLRRVALKNVDSSPSPFQP----LRNLTILDLSNNNIA 493
Query: 295 GQIPIGLRNLTSLRHLDLRFN 315
L L L LDL+ N
Sbjct: 494 NINDDMLEGLEKLEILDLQHN 514
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL-----SNLQY 179
LK L HL++ ND GI+ + G L NL+YL+LS + F + L S L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS-FTSLRTLTNETFVSLAHSPLHI 395
Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTN----SLPSLKV 234
L+L+ +S + D+ SWL L +L+ L L+++ +W + N L K
Sbjct: 396 LNLTKNKIS--KIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
L+LT+ P L L +A+ N D+S + LRNL +DLS+N
Sbjct: 453 LQLTRNSFALVPSL-----QRLMLRRVALKNVDSSPSPFQP----LRNLTILDLSNNNIA 503
Query: 295 GQIPIGLRNLTSLRHLDLRFN 315
L L L LDL+ N
Sbjct: 504 NINDDMLEGLEKLEILDLQHN 524
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNL-----SNLQY 179
LK L HL++ ND GI+ + G L NL+YL+LS + F + L S L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS-FTSLRTLTNETFVSLAHSPLHI 390
Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTN----SLPSLKV 234
L+L+ +S + D+ SWL L +L+ L L+++ +W + N L K
Sbjct: 391 LNLTKNKIS--KIESDAFSWLGHLEVLD-LGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
L+LT+ P L L +A+ N D+S + LRNL +DLS+N
Sbjct: 448 LQLTRNSFALVPSL-----QRLMLRRVALKNVDSSPSPFQP----LRNLTILDLSNNNIA 498
Query: 295 GQIPIGLRNLTSLRHLDLRFN 315
L L L LDL+ N
Sbjct: 499 NINDDMLEGLEKLEILDLQHN 519
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL +A L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N+L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
+DLS NQ Q +P+ + L +L LD+ FN S G L +L+ L + N L+ T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 346 SSVGLENLTSIETLDLSGNS 365
L +E L L+ N+
Sbjct: 140 PPGLLTPTPKLEKLSLANNN 159
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL +A L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N+L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
+DLS NQ Q +P+ + L +L LD+ FN S G L +L+ L + N L+ T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 346 SSVGLENLTSIETLDLSGNS 365
L +E L L+ N+
Sbjct: 140 PPGLLTPTPKLEKLSLANNN 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL +A L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N+L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
+DLS NQ Q +P+ + L +L LD+ FN S G L +L+ L + N L+ T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 346 SSVGLENLTSIETLDLSGNS 365
L +E L L+ N+
Sbjct: 140 PPGLLTPTPKLEKLSLANNN 159
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL + L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL + L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 78/188 (41%), Gaps = 39/188 (20%)
Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
D + LS L+ SL+ L L L+L + L+K L V +LP L L L+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHN 87
Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
QL P LL +L L ++ N + +P+G
Sbjct: 88 QLQSLP-LLGQTLPALTVLDVSFNRLTS----------------------------LPLG 118
Query: 301 -LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSIE 357
LR L L+ L L+ N + PG L+ LE LS+A N L + + GLENL +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL---D 175
Query: 358 TLDLSGNS 365
TL L NS
Sbjct: 176 TLLLQENS 183
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 36/173 (20%)
Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
LS L+ SL+ L L L+L + L+K L V +LP L L L+ QL P
Sbjct: 39 LSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP 94
Query: 247 PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLT 305
LL +L L ++ N + +P+G LR L
Sbjct: 95 -LLGQTLPALTVLDVSFNRLTS----------------------------LPLGALRGLG 125
Query: 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
L+ L L+ N + PG L+ LE LS+A N+L + + GLENL ++
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL + L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 78/188 (41%), Gaps = 39/188 (20%)
Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
D + LS L+ SL+ L L L+L + L+K L V +LP L L L+
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPVLGTLDLSHN 87
Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
QL P LL +L L ++ N + +P+G
Sbjct: 88 QLQSLP-LLGQTLPALTVLDVSFNRLTS----------------------------LPLG 118
Query: 301 -LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSIE 357
LR L L+ L L+ N + PG L+ LE LS+A N L + + GLENL +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL---D 175
Query: 358 TLDLSGNS 365
TL L NS
Sbjct: 176 TLLLQENS 183
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 205 MLEHLDLSQMNLSKAS-DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
++ + L+Q+NL + L V +LP L L L+ QL P LL +L L ++
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSF 109
Query: 264 NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTP 322
N + +P+G LR L L+ L L+ N + P
Sbjct: 110 NRLTS----------------------------LPLGALRGLGELQELYLKGNELKTLPP 141
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSV--GLENLTSI 356
G L+ LE LS+A N+L + + GLENL ++
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLR 313
+++K+L L+ N + +G + NL + L S++ +L SL HLDL
Sbjct: 52 AAMKSLDLSFNKI--TYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 314 FNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPT 373
N+ +S + W + L++L++ N Q + NLT+++TL +
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 168
Query: 374 SFARLCKLTSVDLSLIDLSQDFSQVLDTF 402
FA L L +++ + L SQ L +
Sbjct: 169 DFAGLTSLNELEIKALSLRNYQSQSLKSI 197
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLR 313
+++K+L L+ N + +G + NL + L S++ +L SL HLDL
Sbjct: 26 AAMKSLDLSFNKI--TYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 314 FNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPT 373
N+ +S + W + L++L++ N Q + NLT+++TL +
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 374 SFARLCKLTSVDLSLIDLSQDFSQVLDTF 402
FA L L +++ + L SQ L +
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSI 171
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
L+L Q+ PL N + + L L+ N N S + GL+++ +DL+S Q
Sbjct: 74 LELKDNQITDLTPL--KNLTKITELELSGNPLKNV-----SAIAGLQSIKTLDLTSTQIT 126
Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
P L L++L+ L L N + +P L+ +L++LS+ N + L LT
Sbjct: 127 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLANLSKLT 182
Query: 355 SIETLD 360
++ D
Sbjct: 183 TLRADD 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG-LRNLVFI 286
L +L L LT QL P + ++LK L L +N L VF L NL ++
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV----ENQLQSLPDGVFDKLTNLTYL 138
Query: 287 DLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
L NQ Q +P G+ LT+L LDL N S G K L+ LS+ N L+
Sbjct: 139 YLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 346 SSVGLENLTSI 356
V + LTS+
Sbjct: 198 DGV-FDRLTSL 207
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF---AGMIPLQLGN 173
K +L+ LK+L ++D+S N F +P+ E ++YLNLS + G IP
Sbjct: 378 KTGETLLTLKNLTNIDISKNSFHS--MPETCQWPEKMKYLNLSSTRIHSVTGCIP----- 430
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
L+ LD+S L+ + L++ L+ L +S+ L D L LP L
Sbjct: 431 -KTLEILDVSNNNLNLFSLNLP---------QLKELYISRNKLMTLPDASL----LPMLL 476
Query: 234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS 269
VLK+++ QL P + +SL+ + L N +D S
Sbjct: 477 VLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
NL + L+SN +L SL HLDL +NY ++ + W + L FL++ N
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Query: 342 QGTISSVGLENLTSIETLDLSGNSKLGGKIPTS-FARLCKLTSVDLSLIDL 391
+ + +LT ++ L + GN KI FA L L +++ DL
Sbjct: 111 KTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFAGLTFLEELEIDASDL 160
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 51/321 (15%)
Query: 142 QIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS----GTFLSNYDLHVDSL 197
Q+P+ ++ Y++LS A + L +LQ+L + G + N ++
Sbjct: 24 QVPELPA---HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----NTF 75
Query: 198 SWLSGLYMLEHLDLSQ-MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANF--- 253
LS L +L+ LD +Q + L + N L +L+VL LT+C L +LS NF
Sbjct: 76 RGLSSLIILK-LDYNQFLQLETGA-----FNGLANLEVLTLTQCNLDG--AVLSGNFFKP 127
Query: 254 -SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDL 312
+SL+ L L NN Q S+ +R +DL+ N+ + L N L
Sbjct: 128 LTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 313 RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIP 372
R + D+ + W + TSI TLDLSGN
Sbjct: 186 RLSSIT---------LQDMNEYWLGWEKCGNPFKN------TSITTLDLSGNGFKESMAK 230
Query: 373 TSFARLC--KLTSVDLS-LIDLSQDF--SQVLD----TFSSCGAYALESLDLSICQISGH 423
F + K+ S+ LS ++ F + D TF A +++ DLS +I
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290
Query: 424 LTNQLLQFKSLHTLELGHNSL 444
L + F L L L N +
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEI 311
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
+DL SN+ LT LR L L N + G + +LE L V N LQ
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
V + L ++ L L N +L P F L KLT + L +L V D +S
Sbjct: 102 IGV-FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS- 158
Query: 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444
L+ L L Q+ + L TL+L +N L
Sbjct: 159 ----LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 71/175 (40%), Gaps = 14/175 (8%)
Query: 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANF 253
+D+ ++ +GL +LE LDLS + D L L L L +C L P L
Sbjct: 70 IDAAAF-TGLTLLEQLDLSDNAQLRVVD-PTTFRGLGHLHTLHLDRCGLQELGPGLFRGL 127
Query: 254 SSLKALHLAINNF----DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
++L+ L+L NN DN+ G NL + L N+ R L SL
Sbjct: 128 AALQYLYLQDNNLQALPDNTFRDLG-------NLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
L L N+ P L L + N+L + V L L S++ L L+ N
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV-LVPLRSLQYLRLNDN 234
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 326 SKFNDLEFLSVAW---NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLT 382
+ F L++ W N+L G I + LT +E LDLS N++L PT+F L L
Sbjct: 49 ASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLH 107
Query: 383 SVDLSLIDLSQ 393
++ L L +
Sbjct: 108 TLHLDRCGLQE 118
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 51/321 (15%)
Query: 142 QIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS----GTFLSNYDLHVDSL 197
Q+P+ ++ Y++LS A + L +LQ+L + G + N ++
Sbjct: 24 QVPELPA---HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----NTF 75
Query: 198 SWLSGLYMLEHLDLSQ-MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANF--- 253
LS L +L+ LD +Q + L + N L +L+VL LT+C L +LS NF
Sbjct: 76 RGLSSLIILK-LDYNQFLQLETGA-----FNGLANLEVLTLTQCNLDG--AVLSGNFFKP 127
Query: 254 -SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDL 312
+SL+ L L NN Q S+ +R +DL+ N+ + L N L
Sbjct: 128 LTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 313 RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIP 372
R + D+ + W + TSI TLDLSGN
Sbjct: 186 RLSSIT---------LQDMNEYWLGWEKCGNPFKN------TSITTLDLSGNGFKESMAK 230
Query: 373 TSFARLC--KLTSVDLS-LIDLSQDF--SQVLD----TFSSCGAYALESLDLSICQISGH 423
F + K+ S+ LS ++ F + D TF A +++ DLS +I
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290
Query: 424 LTNQLLQFKSLHTLELGHNSL 444
L + F L L L N +
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEI 311
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
NL + L+SN +L SL HLDL +NY ++ + W + L FL++ N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 342 QGTISSVGLENLTSIETLDLSGNSKLGGKIP-TSFARLCKLTSVDLSLIDL 391
+ + +LT ++ L + GN KI FA L L +++ DL
Sbjct: 137 KTLGETSLFSHLTKLQILRV-GNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 147/381 (38%), Gaps = 55/381 (14%)
Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLG--NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203
+LG+ E++ ++S A G+ + + NL ++ D+S T +
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCF------------- 274
Query: 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL---SANFSSLKALH 260
L+ LDL+ +L + + + L +LK + HF L +ANF SL H
Sbjct: 275 TQLQELDLTATHLKG------LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT--H 326
Query: 261 LAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFN 318
L I L + L NL +DLS N + + L+NL+ L+ L+L N
Sbjct: 327 LYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 319 STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS------GNSKLGGKIP 372
+ LE L +A+ L +NL ++ L+L+ N L +P
Sbjct: 387 GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 373 TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFK 432
L L D + + +L T S LE L LS C G L+ F
Sbjct: 447 V----LRHLNLKGNHFQDGTITKTNLLQTVGS-----LEVLILSSC---GLLSIDQQAFH 494
Query: 433 SLHTL---ELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSN 489
SL + +L HNSL +L P L LS ++LS+
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINI-ISPRLLPILSQQSTINLSH 553
Query: 490 NKLNASLSEIHFVNLTKLTWF 510
N L+ + S IHF LTW+
Sbjct: 554 NPLDCTCSNIHF-----LTWY 569
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 40/263 (15%)
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL---P 230
L NL +LDL+ ++W+ H LS + L+ + SL
Sbjct: 53 LMNLTFLDLTRC----------QINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPK 102
Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS 290
SLK L L + + + + N +L++L+L N+ + F F RNL +D +
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKD---FPARNLKVLDFQN 159
Query: 291 NQFQGQIPIGLRNLTSLRHLDLRFN----------YFNSTTPGWLSKFNDLEFLSVAWNS 340
N +R+L +L L FN F+ST L+ F LSV +N
Sbjct: 160 NAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLN-FGGTPNLSVIFNG 218
Query: 341 LQ-GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVL 399
LQ T S+ L I+ D+S + L G LC+++ L+L + FS +
Sbjct: 219 LQNSTTQSLWLGTFEDIDDEDISS-AMLKG--------LCEMSVESLNLQE--HRFSDIS 267
Query: 400 DTFSSCGAYALESLDLSICQISG 422
T C L+ LDL+ + G
Sbjct: 268 STTFQCFT-QLQELDLTATHLKG 289
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKY--LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
L L L HL+L GN F+ I K L ++ +L L LS + +L + +
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYM 205
+DLS L+ +DSLS L G+Y+
Sbjct: 502 VDLSHNSLTCDS--IDSLSHLKGIYL 525
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 37/256 (14%)
Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPL-QLGNLSNL----- 177
+L+ + L ++G IQ +YL +LE YLNL+G + + PL L L+NL
Sbjct: 42 ELESITKLVVAGEKVASIQGIEYLTNLE---YLNLNGNQITDISPLSNLVKLTNLYIGTN 98
Query: 178 QYLDLSG----TFLSNYDLHVDSLSWLSGLYMLEH---LDL-SQMNLSKASDWLLVTNSL 229
+ D+S T L L+ D++S +S L L L+L + NLS S ++
Sbjct: 99 KITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPL----SNX 154
Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS 289
L L +T+ ++ P+ AN + L +L L N ++ S + L +L +
Sbjct: 155 TGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAY 207
Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV- 348
NQ P+ N T L L + N +P L+ + L +L + N IS +
Sbjct: 208 VNQITDITPVA--NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDIN 259
Query: 349 GLENLTSIETLDLSGN 364
+++LT ++ L++ N
Sbjct: 260 AVKDLTKLKXLNVGSN 275
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA 337
FG N+ D N F G +S+RHLDL + S DL+ L++A
Sbjct: 247 FGFHNIK--DPDQNTFAGLAR------SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 338 WNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL 386
+N + I+ L +++ L+LS N LG ++F L K+ +DL
Sbjct: 299 YNKI-NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDL 345
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 66/312 (21%)
Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
L +V +L DLK L +L+ N I + G L+NL+ LNLS +
Sbjct: 281 LNSRVFETLKDLKVL---NLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYG 336
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
L + Y+DL ++ + + +L L L+ D + L + +PS+
Sbjct: 337 LPKVAYIDLQKNHIA--IIQDQTFKFLEKLQTLDLRD----------NALTTIHFIPSIP 384
Query: 234 VLKLTKCQLCHFPPL-LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
+ L+ +L P + L+AN +HL+ N +N Y ++ + +L + L+ N+
Sbjct: 385 DIFLSGNKLVTLPKINLTANL-----IHLSENRLENLDILY--FLLRVPHLQILILNQNR 437
Query: 293 FQG--------------QIPIG----------------LRNLTSLRHLDLRFNYFNSTTP 322
F Q+ +G L+ L+ L L NY NS P
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
Query: 323 GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLT 382
G S L LS+ N L +S L ++E LD+S N L P F
Sbjct: 498 GVFSHLTALRGLSLNSNRLT-VLSHNDLP--ANLEILDISRNQLLAPN-PDVF------- 546
Query: 383 SVDLSLIDLSQD 394
V LS++D++ +
Sbjct: 547 -VSLSVLDITHN 557
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPPF 529
+P L HL +DLSNN++ ++LS F N+T+L +LIL +N +PP
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLL-------TLILSYNRLRCIPPR 96
Query: 530 Q---LETLQLRSCH 540
L++L+L S H
Sbjct: 97 TFDGLKSLRLLSLH 110
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
L+L Q+ PL N + + L L+ N N S + GL+++ +DL+S Q
Sbjct: 68 LELKDNQITDLAPL--KNLTKITELELSGNPLKNV-----SAIAGLQSIKTLDLTSTQIT 120
Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
P L L++L+ L L N + +P L+ +L++LS+ + L LT
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176
Query: 355 SIETLD 360
+++ D
Sbjct: 177 TLKADD 182
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMI---PLQLGNLSNL 177
+ +L +L LDLS N +P LGS L+Y F M+ P + GNL NL
Sbjct: 265 EIKNLSNLRVLDLSHNRL--TSLPAELGSCFQLKYFYF----FDNMVTTLPWEFGNLCNL 318
Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGL 203
Q+L + G L L + + ++GL
Sbjct: 319 QFLGVEGNPLEKQFLKILTEKSVTGL 344
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
P+L L L L+LSGN + I+ P L +LR L L A+ A + +L +L+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 180 LDLSGTFLSN--YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
L+LS L + +DL + L+ LE + L+ D L ++ L
Sbjct: 231 LNLSHNNLMSLPHDL-------FTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNT 283
Query: 238 TKCQLCHFPPLLSANF 253
T C CH P L +
Sbjct: 284 TCCARCHAPAGLKGRY 299
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
T+ +L P + N L +I F++ LR+L + LS N + +I
Sbjct: 22 TRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKH------LRHLEILQLSKNLVR-KI 74
Query: 298 PIG----LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW--NSLQGTISSVGLE 351
+G L +L +L D R + +LSK +L W N+ +I S
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL------WLRNNPIESIPSYAFN 128
Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL-----------------IDLSQD 394
+ S+ LDL +L +F L L ++L + ++LS +
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGN 188
Query: 395 FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF 445
++ S G +L L L Q++ N KSL L L HN+L
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
P+L L L L+LSGN + I+ P L +LR L L A+ A + +L +L+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 180 LDLSGTFLSN--YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
L+LS L + +DL + L+ LE + L+ D L ++ L
Sbjct: 231 LNLSHNNLMSLPHDL-------FTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNT 283
Query: 238 TKCQLCHFPPLLSANF 253
T C CH P L +
Sbjct: 284 TCCARCHAPAGLKGRY 299
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 30/229 (13%)
Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
T+ +L P + N L +I F++ LR+L + LS N + +I
Sbjct: 22 TRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKH------LRHLEILQLSKNLVR-KI 74
Query: 298 PIGLRN-LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW--NSLQGTISSVGLENLT 354
+G N L SL L+L F+ +T P F L L W N+ +I S +
Sbjct: 75 EVGAFNGLPSLNTLEL-FDNRLTTVPT--QAFEYLSKLRELWLRNNPIESIPSYAFNRVP 131
Query: 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL-----------------IDLSQDFSQ 397
S+ LDL +L +F L L ++L + ++LS +
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 398 VLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG 446
++ S G +L L L Q++ N KSL L L HN+L
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFID 287
LP L L+L + QL P S ++ L L +N + + + +F GL L ++
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG----ENKIKEISNKMFLGLHQLKTLN 108
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318
L NQ +P +L SL L+L N FN
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 260 HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS 319
H I D S+F++ + L ++DLS N+ + I +L+HLDL FN F++
Sbjct: 54 HNRIQYLDISVFKFN------QELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDA 104
>pdb|4J5I|A Chain A, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|B Chain B, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|C Chain C, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|D Chain D, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|E Chain E, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|F Chain F, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|G Chain G, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|H Chain H, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
Length = 304
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 32 NSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKW 72
S+VG D+E AL +L QD I W+ GD W
Sbjct: 205 KSFVGLKDTESAALFRLFQDRITRLENTVRWSWKPGDLAIW 245
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
K++ +L LK HL LS N+ E I L +ENLR L+L G +
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSL-GRNL----------IKK 84
Query: 177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDW 222
++ LD L + + ++ LSG+ L +L + M+ +K ++W
Sbjct: 85 IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
K++ +L LK HL LS N+ E I L +ENLR L+L G +
Sbjct: 40 KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSL-GRNL----------IKK 85
Query: 177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDW 222
++ LD L + + ++ LSG+ L +L + M+ +K ++W
Sbjct: 86 IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 131
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 132 DLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD 191
DLSG DF G + + LR N GAK G ++ DL+G LS D
Sbjct: 17 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLG---------ASFFDADLTGADLSEAD 67
Query: 192 LHVDSLSWLSGLYMLEHLDLSQMNLSKAS 220
L S L + ++L+ NL A+
Sbjct: 68 LRGADFS----LANVTKVNLTNANLEGAT 92
>pdb|4F88|1 Chain 1, X-Ray Crystal Structure Of Plyc
pdb|4F88|2 Chain 2, X-Ray Crystal Structure Of Plyc
Length = 465
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 65 GDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGD 99
GDG C W G + + + G+ + S +P L GD
Sbjct: 329 GDGQCYAWVGWWSARVCGYSISYSTGDPMLPLIGD 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,963,297
Number of Sequences: 62578
Number of extensions: 651438
Number of successful extensions: 1727
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 268
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)