Query 047285
Match_columns 552
No_of_seqs 436 out of 4645
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-55 2.2E-60 496.9 37.3 493 38-550 27-568 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-47 3.8E-52 430.3 30.6 450 82-548 118-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.3E-37 4.9E-42 298.1 7.0 366 127-537 79-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-36 3.2E-41 292.6 6.7 370 108-522 84-456 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.2E-34 2.5E-39 281.5 -3.7 370 123-518 4-375 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 2.5E-34 5.5E-39 265.6 -8.6 393 118-542 106-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.5E-33 3.3E-38 273.8 -4.3 345 117-512 46-393 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 2.4E-33 5.2E-38 259.2 -12.0 406 117-552 82-527 (565)
9 KOG0618 Serine/threonine phosp 100.0 2.1E-31 4.7E-36 270.2 -1.2 397 113-540 55-487 (1081)
10 KOG0618 Serine/threonine phosp 99.9 3.8E-28 8.2E-33 246.8 -4.0 382 122-543 41-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 8.7E-24 1.9E-28 238.6 28.3 342 120-492 552-905 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1E-23 2.2E-28 238.1 26.9 347 144-540 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 9.1E-21 2E-25 199.2 17.4 155 126-318 201-355 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.2E-25 196.7 17.7 263 151-498 201-463 (788)
15 KOG4237 Extracellular matrix p 99.8 2.4E-22 5.1E-27 186.4 -1.9 379 129-539 70-498 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 3.3E-19 7.2E-24 188.7 17.6 205 34-267 57-296 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 3.7E-18 8E-23 180.9 12.7 246 176-493 179-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 1.9E-19 4.1E-24 177.3 1.8 59 130-188 2-64 (319)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-19 2.9E-24 178.4 0.1 284 208-541 2-319 (319)
20 KOG4237 Extracellular matrix p 99.7 1.3E-19 2.8E-24 168.4 -0.8 283 231-522 68-363 (498)
21 KOG0617 Ras suppressor protein 99.6 5.7E-18 1.2E-22 139.7 -4.5 162 122-322 29-190 (264)
22 KOG0617 Ras suppressor protein 99.6 3.3E-17 7.2E-22 135.2 -4.5 163 326-526 30-193 (264)
23 PLN03150 hypothetical protein; 99.5 7.1E-14 1.5E-18 147.9 14.0 129 35-188 367-503 (623)
24 PLN03150 hypothetical protein; 99.2 7.7E-11 1.7E-15 125.0 9.3 113 409-522 419-532 (623)
25 KOG3207 Beta-tubulin folding c 99.2 7.1E-12 1.5E-16 119.0 0.8 212 123-341 118-338 (505)
26 KOG0532 Leucine-rich repeat (L 99.1 3.4E-12 7.3E-17 124.9 -3.7 194 305-540 75-271 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 5.1E-17 126.0 -5.3 198 279-516 73-271 (722)
28 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3E-16 117.0 -0.4 112 251-364 118-232 (505)
29 KOG1909 Ran GTPase-activating 99.1 8.7E-12 1.9E-16 115.2 -1.8 200 279-492 90-310 (382)
30 KOG1259 Nischarin, modulator o 99.1 3.7E-11 8E-16 108.7 1.4 128 409-543 285-413 (490)
31 PF14580 LRR_9: Leucine-rich r 99.0 8.9E-11 1.9E-15 101.9 2.7 127 122-260 15-146 (175)
32 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.4E-15 114.3 7.6 197 130-372 97-294 (394)
33 COG4886 Leucine-rich repeat (L 99.0 4.1E-10 8.8E-15 114.2 7.3 199 284-523 96-295 (394)
34 KOG1909 Ran GTPase-activating 99.0 2.4E-11 5.2E-16 112.4 -2.0 249 170-468 25-310 (382)
35 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.6E-15 123.0 4.9 106 126-240 545-652 (889)
36 PF14580 LRR_9: Leucine-rich r 99.0 5.7E-10 1.2E-14 96.9 4.9 129 148-313 16-148 (175)
37 KOG1259 Nischarin, modulator o 98.9 2E-10 4.3E-15 104.0 0.9 130 202-342 282-412 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.2E-14 117.8 4.9 279 200-492 519-806 (889)
39 PF08263 LRRNT_2: Leucine rich 98.8 4.4E-09 9.6E-14 68.4 4.5 40 39-78 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.8E-14 110.7 -1.4 103 253-365 71-173 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 9.9E-09 2.1E-13 73.1 2.7 59 409-467 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.7 9E-09 1.9E-13 73.3 2.3 59 433-491 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.6E-14 109.1 -2.0 129 124-267 70-199 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 3E-10 6.4E-15 102.8 -9.4 183 127-339 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-09 3.1E-14 98.5 -5.6 182 281-492 185-375 (419)
46 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 90.3 0.7 88 203-292 70-157 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.4 5.9E-08 1.3E-12 87.0 -0.9 141 353-493 156-316 (388)
48 KOG2982 Uncharacterized conser 98.3 9.4E-08 2E-12 86.9 -0.3 190 279-495 69-264 (418)
49 KOG1859 Leucine-rich repeat pr 98.2 5.7E-08 1.2E-12 98.4 -4.1 124 410-541 166-291 (1096)
50 KOG4579 Leucine-rich repeat (L 98.2 9.7E-08 2.1E-12 76.8 -2.6 139 355-525 28-166 (177)
51 KOG1859 Leucine-rich repeat pr 98.2 4.1E-08 8.9E-13 99.5 -6.8 106 202-317 185-291 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.1 2.1E-07 4.6E-12 83.6 -2.4 39 122-160 26-67 (388)
53 PF12799 LRR_4: Leucine Rich r 98.0 5.7E-06 1.2E-10 53.8 3.4 37 152-189 2-38 (44)
54 KOG4341 F-box protein containi 98.0 2.4E-07 5.3E-12 88.2 -5.4 110 126-239 138-251 (483)
55 KOG4341 F-box protein containi 97.9 2.3E-07 4.9E-12 88.4 -6.1 86 175-264 138-226 (483)
56 KOG4579 Leucine-rich repeat (L 97.9 5.8E-07 1.3E-11 72.4 -3.4 136 409-550 28-167 (177)
57 PRK15386 type III secretion pr 97.9 7.5E-05 1.6E-09 73.3 9.3 78 122-218 48-126 (426)
58 KOG3665 ZYG-1-like serine/thre 97.8 7.8E-06 1.7E-10 87.0 2.5 109 126-242 122-232 (699)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 51.3 2.9 38 126-165 1-38 (44)
60 KOG3665 ZYG-1-like serine/thre 97.8 6.1E-06 1.3E-10 87.8 0.5 109 175-293 122-232 (699)
61 KOG1644 U2-associated snRNP A' 97.7 5.9E-05 1.3E-09 65.3 5.1 106 432-539 42-150 (233)
62 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 63.7 4.8 86 126-218 42-127 (233)
63 KOG2739 Leucine-rich acidic nu 97.5 5.2E-05 1.1E-09 68.5 2.8 117 116-239 33-152 (260)
64 PRK15386 type III secretion pr 97.5 0.00022 4.8E-09 70.1 6.7 118 406-539 50-187 (426)
65 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 77.0 -2.0 65 303-367 241-308 (482)
66 KOG2123 Uncharacterized conser 96.9 3.1E-05 6.7E-10 70.3 -5.3 83 123-214 16-98 (388)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0029 6.4E-08 52.6 5.8 36 325-363 77-112 (129)
68 PF13306 LRR_5: Leucine rich r 96.8 0.0039 8.6E-08 51.8 6.6 105 226-338 8-112 (129)
69 KOG1947 Leucine rich repeat pr 96.7 0.00031 6.8E-09 73.3 -0.4 88 279-366 186-281 (482)
70 KOG2123 Uncharacterized conser 96.7 6.2E-05 1.3E-09 68.3 -5.3 99 409-511 20-123 (388)
71 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 60.4 2.3 82 409-494 44-130 (260)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0029 6.4E-08 34.1 0.4 21 530-551 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.0081 1.8E-07 32.3 0.5 19 153-172 2-20 (22)
74 PF13504 LRR_7: Leucine rich r 93.0 0.065 1.4E-06 26.7 1.4 10 177-186 3-12 (17)
75 KOG3864 Uncharacterized conser 91.8 0.025 5.5E-07 49.5 -1.8 81 307-387 103-184 (221)
76 KOG4308 LRR-containing protein 91.1 0.0018 3.9E-08 66.2 -11.1 188 330-542 88-303 (478)
77 KOG3864 Uncharacterized conser 90.1 0.041 8.8E-07 48.2 -2.0 82 409-490 102-186 (221)
78 KOG4308 LRR-containing protein 89.2 0.0054 1.2E-07 62.8 -9.6 92 228-319 202-304 (478)
79 KOG0473 Leucine-rich repeat pr 85.9 0.013 2.8E-07 52.3 -7.8 88 406-496 40-127 (326)
80 smart00370 LRR Leucine-rich re 85.9 0.77 1.7E-05 25.6 2.2 17 175-191 2-18 (26)
81 smart00369 LRR_TYP Leucine-ric 85.9 0.77 1.7E-05 25.6 2.2 17 175-191 2-18 (26)
82 KOG0473 Leucine-rich repeat pr 84.8 0.017 3.7E-07 51.6 -7.5 87 121-216 37-123 (326)
83 smart00369 LRR_TYP Leucine-ric 83.7 0.97 2.1E-05 25.2 1.9 20 230-249 2-21 (26)
84 smart00370 LRR Leucine-rich re 83.7 0.97 2.1E-05 25.2 1.9 20 230-249 2-21 (26)
85 PF13516 LRR_6: Leucine Rich r 82.4 0.36 7.9E-06 26.4 -0.2 16 409-424 3-18 (24)
86 smart00365 LRR_SD22 Leucine-ri 72.1 3.3 7.2E-05 23.2 1.7 14 175-188 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 71.9 2.8 6E-05 23.5 1.4 19 529-548 2-20 (26)
88 KOG4242 Predicted myosin-I-bin 68.6 29 0.00062 35.2 8.4 38 455-492 439-480 (553)
89 KOG3763 mRNA export factor TAP 63.1 3.7 8.1E-05 42.0 1.3 14 408-421 218-231 (585)
90 KOG3763 mRNA export factor TAP 62.2 4 8.6E-05 41.8 1.3 13 282-294 271-283 (585)
91 KOG4242 Predicted myosin-I-bin 60.1 68 0.0015 32.6 9.2 61 409-469 414-481 (553)
92 smart00368 LRR_RI Leucine rich 58.7 8.8 0.00019 21.8 1.8 13 127-139 3-15 (28)
93 smart00367 LRR_CC Leucine-rich 57.5 6.6 0.00014 21.8 1.2 17 353-369 1-17 (26)
94 TIGR00864 PCC polycystin catio 32.7 29 0.00063 43.2 2.4 36 462-497 1-36 (2740)
95 PF11466 Doppel: Prion-like pr 31.7 47 0.001 19.1 1.9 20 1-20 1-20 (30)
96 PF02950 Conotoxin: Conotoxin; 26.3 33 0.00071 25.0 0.9 7 66-72 61-67 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-55 Score=496.89 Aligned_cols=493 Identities=29% Similarity=0.417 Sum_probs=347.4
Q ss_pred cHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCC-----CCchhhcccCccccC
Q 047285 38 IDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG-----GDLREVKAGSNYERS 112 (552)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~ 112 (552)
.++|++||++||+++.+|.+.+.+|+. ..+||.|.||+|++ .++|+.|++++...... ..++.++.+ +...|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L-~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTI-NLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEE-ECCCC
Confidence 357899999999999888888899986 67999999999985 67999999998654322 122333332 34456
Q ss_pred ccccccCcccc-CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCC-C
Q 047285 113 KLGGKVNPSLV-DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN-Y 190 (552)
Q Consensus 113 ~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~ 190 (552)
.+.|.+|..+. .+++|++|++++|.+++ .+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.. +
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 77788887665 88889999988888876 3564 457788888888888887888888888888888888886542 2
Q ss_pred ccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC
Q 047285 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL 270 (552)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 270 (552)
|. .+.++++|++|++++|.+.+ .++..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus 181 p~------~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 181 PN------SLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred Ch------hhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 21 26677777777777777765 45666677777777777777777777777777777777777777777766
Q ss_pred ccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCcccc
Q 047285 271 FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350 (552)
Q Consensus 271 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l 350 (552)
|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. +
T Consensus 253 p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 328 (968)
T PLN00113 253 PS---SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-L 328 (968)
T ss_pred Ch---hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-H
Confidence 66 6667777777777777777777777777777777777777777777777777777777777777776666655 6
Q ss_pred CCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccc-------------------cccccccCCCCCC
Q 047285 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV-------------------LDTFSSCGAYALE 411 (552)
Q Consensus 351 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~~~L~ 411 (552)
..+++|+.|++++|. +.+.+|..++.+++|+.++++.+......... ..+..+..+++|+
T Consensus 329 ~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 329 TSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred hcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 666777777777776 66666666666666666666544322100000 0111233445566
Q ss_pred EEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCC-----------------------CCCCEEeCCCCcC
Q 047285 412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL-----------------------SSLKKLDLSNNML 468 (552)
Q Consensus 412 ~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------------------~~L~~L~L~~n~l 468 (552)
.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+ ++|+.|++++|++
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 66666666665555555555555555555555554444433333 4566666666666
Q ss_pred CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~ 548 (552)
++.+|..+.++++|+.|++++|++.+.+|. .+.++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 666777777778888888888888888887 6788888888888888888888888888888888888888888888876
Q ss_pred cc
Q 047285 549 LH 550 (552)
Q Consensus 549 l~ 550 (552)
+.
T Consensus 567 l~ 568 (968)
T PLN00113 567 LG 568 (968)
T ss_pred Hh
Confidence 54
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-47 Score=430.29 Aligned_cols=450 Identities=30% Similarity=0.384 Sum_probs=344.0
Q ss_pred CcEEEEEcCCCCccCC---CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC
Q 047285 82 GHVLQLSLQNPFSYLG---GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL 158 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L 158 (552)
.+++.|++++...... +.++.++.+ +...|.+.+.+|..++++++|++|++++|.+.+ .+|..++++++|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L-~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETL-DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEE-ECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeec
Confidence 4688888887654321 223333332 234467778888888889999999999888877 48888888889999999
Q ss_pred CCCcCCCCCccccCCCCCCCEEeccCCCCCC-CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEc
Q 047285 159 SGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN-YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237 (552)
Q Consensus 159 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l 237 (552)
++|.+.+.+|..++++++|++|++++|.+.. +|. .+..+++|++|++++|.+.+ .++..+.++++|++|++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY------EIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh------hHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEEC
Confidence 8888888888888888889999888887653 221 36777888888888887766 45666777788888888
Q ss_pred CCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCC
Q 047285 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYF 317 (552)
Q Consensus 238 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 317 (552)
++|.+.+..|..+.++++|+.|++++|.+.+.+|. ++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 88877777777777777888888887777777766 666777777777777777777777777777777777777777
Q ss_pred CCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcc
Q 047285 318 NSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQ 397 (552)
Q Consensus 318 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 397 (552)
.+.+|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|. +.+.+|..+..+++|+.+++..+........
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCE-ecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 7777777777777777777777777666655 5555556666666655 5555555555555555555543332211000
Q ss_pred -------------------ccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCC
Q 047285 398 -------------------VLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458 (552)
Q Consensus 398 -------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 458 (552)
...+.....+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++.+|..+..+++|
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 0011122356678888888888877777654 45789999999999999999999999999
Q ss_pred CEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCC
Q 047285 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS 538 (552)
Q Consensus 459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 538 (552)
+.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|. .+..+++|+.|++++|++.+.+|..+..+.+|+.+++++
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcc
Q 047285 539 CHLGPHFPSW 548 (552)
Q Consensus 539 n~~~~~iP~~ 548 (552)
|++.|.+|+.
T Consensus 581 N~l~~~~p~~ 590 (968)
T PLN00113 581 NHLHGSLPST 590 (968)
T ss_pred CcceeeCCCc
Confidence 9999999964
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-37 Score=298.11 Aligned_cols=366 Identities=28% Similarity=0.287 Sum_probs=282.3
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML 206 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L 206 (552)
.-+.||+++|++..+ -+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+++.... +..++.|
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~-----L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE-----LSALPAL 151 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH-----HHhHhhh
Confidence 456789999988874 5677888999999999999887 78877777777999999988887765432 6677788
Q ss_pred CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286 (552)
Q Consensus 207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L 286 (552)
+.||||.|.++.++. ..+..-.++++|++++|.++..-...|..+.+|..|.+++|.++...+. .|.++++|+.|
T Consensus 152 rslDLSrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~L 226 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESL 226 (873)
T ss_pred hhhhhhhchhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH---Hhhhcchhhhh
Confidence 888888887776421 2233445788888888888877777777777888888888877765555 56667788888
Q ss_pred eccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCC
Q 047285 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366 (552)
Q Consensus 287 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~ 366 (552)
+|..|.+.-.---.|..+++|+.|.+..|.+.......|..+.++++|+++.|+++ .+....+.++++|+.|++++|.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~Na- 304 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNA- 304 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhh-
Confidence 88887775322345677788888888888877777777777888888888888777 3333336677888888888886
Q ss_pred CCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC
Q 047285 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG 446 (552)
Q Consensus 367 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 446 (552)
+...-++.|... ++|++|+|++|+++...+..|..+..|++|.|++|.+..
T Consensus 305 I~rih~d~Wsft-----------------------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 305 IQRIHIDSWSFT-----------------------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred hheeecchhhhc-----------------------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 544444444433 489999999999998888889889999999999999885
Q ss_pred CCcccccCCCCCCEEeCCCCcCCccCcc---cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC
Q 047285 447 PLPPALGELSSLKKLDLSNNMLNGFIPL---SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP 523 (552)
Q Consensus 447 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 523 (552)
.-...|..+.+|++|||++|.+...+.+ .|.++++|+.|.+.+|++ ..||...|.+++.|++|+|.+|.+...-|.
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCCcceeeccc
Confidence 5556788889999999999988755433 467789999999999999 778888999999999999999999988888
Q ss_pred CCcCcccccEEecC
Q 047285 524 NWVPPFQLETLQLR 537 (552)
Q Consensus 524 ~~~~~~~L~~L~l~ 537 (552)
.|..+ +|+.|-+.
T Consensus 435 AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 435 AFEPM-ELKELVMN 447 (873)
T ss_pred ccccc-hhhhhhhc
Confidence 88887 88888774
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-36 Score=292.56 Aligned_cols=370 Identities=25% Similarity=0.312 Sum_probs=316.0
Q ss_pred ccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCC
Q 047285 108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFL 187 (552)
Q Consensus 108 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 187 (552)
++++|.+...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|..|.|+..-.+.+..++.|++|||+.|.|
T Consensus 84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eccccccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 34446666666677899999999999999999 6899888889999999999999987778899999999999999999
Q ss_pred CCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285 188 SNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267 (552)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 267 (552)
++++... +..-.++++|+|++|.|++. -...+.++.+|..|.+++|.++..++..|.++++|+.|++.+|.+.
T Consensus 162 s~i~~~s-----fp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 162 SEIPKPS-----FPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hcccCCC-----CCCCCCceEEeecccccccc--ccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 9887643 67778999999999999985 3455677889999999999999999999999999999999999987
Q ss_pred CCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCc
Q 047285 268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347 (552)
Q Consensus 268 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 347 (552)
-.... .|..+++|+.|.+..|++.......|-.+.++++|+++.|+++..-..++.+++.|+.|++++|.+. .+..
T Consensus 235 ive~l---tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~ 310 (873)
T KOG4194|consen 235 IVEGL---TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHI 310 (873)
T ss_pred eehhh---hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeec
Confidence 55433 6778999999999999998776778888999999999999999988899999999999999999998 4444
Q ss_pred cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ 427 (552)
Q Consensus 348 ~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 427 (552)
..++..++|+.|++++|. ++..-+..|..+. .|++|.|++|.++......
T Consensus 311 d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~-----------------------------~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNR-ITRLDEGSFRVLS-----------------------------QLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred chhhhcccceeEeccccc-cccCChhHHHHHH-----------------------------HhhhhcccccchHHHHhhH
Confidence 448889999999999998 7766666666665 7889999999988777777
Q ss_pred hcCCCCCcEEECCCCcccCCC---cccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcC
Q 047285 428 LLQFKSLHTLELGHNSLFGPL---PPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNL 504 (552)
Q Consensus 428 l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 504 (552)
|..+++|++|||++|.+...+ ...|..+++|+.|++.+|++....-..|.++++|+.|+|.+|.+-...|. .|..+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n-AFe~m 439 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN-AFEPM 439 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc-ccccc
Confidence 888899999999999887543 34567899999999999999844445688899999999999999666666 88888
Q ss_pred CCCCEEEccCCeeeEEcC
Q 047285 505 TKLTWFSASGNSLILKFN 522 (552)
Q Consensus 505 ~~L~~L~L~~n~~~~~~~ 522 (552)
.|++|.+..-.+.+.+-
T Consensus 440 -~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 440 -ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred -hhhhhhhcccceEEecc
Confidence 89999888877776654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=1.2e-34 Score=281.45 Aligned_cols=370 Identities=26% Similarity=0.359 Sum_probs=263.7
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 202 (552)
+-++.+|-.|+++|.|+|..+|.....+++++-|.|.+.++. .+|+.++.+.+|++|.+++|++..+... ++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE------Ls~ 76 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE------LSD 76 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh------hcc
Confidence 345666777888888877678887778888888888887776 6788888888888888888776655433 666
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
++.|+.+.+..|++... .+|..+-.+..|+.|+++.|++... |..+..-+++-+|++++|++...... .+.+++.
T Consensus 77 Lp~LRsv~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~---lfinLtD 151 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNS---LFINLTD 151 (1255)
T ss_pred chhhHHHhhhccccccC-CCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCch---HHHhhHh
Confidence 77777777777777654 5666677777777888888777654 34455566777778887777765555 5567777
Q ss_pred ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce-eecCccccCCCCccCEEeC
Q 047285 283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ-GTISSVGLENLTSIETLDL 361 (552)
Q Consensus 283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~l~~L~~L~l 361 (552)
|-.|+|++|.+. .+|..+..+..|++|++++|.+.-.-...+..+++|+.|.+++.+-+ ..+|.. +..+.+|..+|+
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDl 229 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDL 229 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccc
Confidence 778888888776 56666777788888888887765444444556667777777776533 355665 777778888888
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
+.|. +. .+|+.+..+++|+.+.++.+.+..-.. ......+|++|++|.|+++ .+|+.++.+++|+.|.+.+
T Consensus 230 S~N~-Lp-~vPecly~l~~LrrLNLS~N~iteL~~------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 230 SENN-LP-IVPECLYKLRNLRRLNLSGNKITELNM------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred cccC-CC-cchHHHhhhhhhheeccCcCceeeeec------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 8876 54 677777777766666665444332100 0111236788888888887 5777888888888888888
Q ss_pred Cccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285 442 NSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518 (552)
Q Consensus 442 n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 518 (552)
|+++ +-+|..++.+..|+++..++|.+. .+|+.+..|+.|+.|.|+.|++ -++|+ .+.-++.|+.||+..|+-.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPe-aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPE-AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechh-hhhhcCCcceeeccCCcCc
Confidence 8876 457788888888888888888876 6788888888888888888887 45676 6777888888888888754
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-34 Score=265.60 Aligned_cols=393 Identities=27% Similarity=0.329 Sum_probs=258.5
Q ss_pred cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL 197 (552)
Q Consensus 118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 197 (552)
+|+.+..+..|+.|+.++|.+. .+|+.++.+..|+.++..+|+++ .+|..++++.+|..+++.+|.+...|..
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~---- 178 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN---- 178 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH----
Confidence 3444444444444444444444 34444444444444444444444 3444444444444444444444443322
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccc
Q 047285 198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV 277 (552)
Q Consensus 198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 277 (552)
.-+++.|+++|+..|-++. +|..++.+.+|..|++..|++...+ .|..++.|.++.++.|++.-.... ..
T Consensus 179 --~i~m~~L~~ld~~~N~L~t---lP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae---~~ 248 (565)
T KOG0472|consen 179 --HIAMKRLKHLDCNSNLLET---LPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAE---HL 248 (565)
T ss_pred --HHHHHHHHhcccchhhhhc---CChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHH---Hh
Confidence 2336677777777777765 5677777888888888888876655 677888888888887776643333 44
Q ss_pred cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc--------
Q 047285 278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG-------- 349 (552)
Q Consensus 278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------- 349 (552)
.+++.+.+||+++|+++ +.|+.+..+.+|++||+++|.+++ .|..++++ +|+.|-+.+|.+. ++....
T Consensus 249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEV 324 (565)
T ss_pred cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHH
Confidence 57888888999999887 778888888889999999988875 45668888 8888888888764 111110
Q ss_pred ---------------------------------cCCCCccCEEeCCCCCCCCCCCchhHhhccc-CceeecccccCCCCC
Q 047285 350 ---------------------------------LENLTSIETLDLSGNSKLGGKIPTSFARLCK-LTSVDLSLIDLSQDF 395 (552)
Q Consensus 350 ---------------------------------l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~-L~~l~l~~~~~~~~~ 395 (552)
.....+.+.|++++-+ ++ .+|..+....+ =-.-.+.++.+....
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt-~VPdEVfea~~~~~Vt~VnfskNqL~e 402 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LT-LVPDEVFEAAKSEIVTSVNFSKNQLCE 402 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cc-cCCHHHHHHhhhcceEEEecccchHhh
Confidence 0111234445555443 33 33333322221 002222222222211
Q ss_pred ccccccccccCCCC-CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcc
Q 047285 396 SQVLDTFSSCGAYA-LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL 474 (552)
Q Consensus 396 ~~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 474 (552)
.|.-. ..+.. .+.+.+++|.+ +.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|.
T Consensus 403 lPk~L----~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 403 LPKRL----VELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred hhhhh----HHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH
Confidence 11100 00111 22344455444 467778889999999999999887 88999999999999999999988 7898
Q ss_pred cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285 475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 475 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
.+..+..++++-.++|++ +.++...+.++.+|..|||.+|.+. .+|+.+++|.+|+.|+++||+|.
T Consensus 476 ~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 888888899998888999 6666647999999999999999987 77889999999999999999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-33 Score=273.78 Aligned_cols=345 Identities=25% Similarity=0.321 Sum_probs=244.8
Q ss_pred ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCC-CCCccccCCCCCCCEEeccCCCCCCCccccC
Q 047285 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFA-GMIPLQLGNLSNLQYLDLSGTFLSNYDLHVD 195 (552)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 195 (552)
.+|+.++.+.+|++|.+++|++. .+-..++.++.|+.++++.|++. ..+|..|.++..|..|||++|++.+.|..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-- 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-- 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh--
Confidence 45666777777777777777666 34556666777777777777653 24666777777777777777777776654
Q ss_pred CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285 196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS 275 (552)
Q Consensus 196 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 275 (552)
+..-+++-.|+||+|+|.+++. ..+-+++.|-.|+++.|.+...+| ....+..|+.|++++|.+.-.-..
T Consensus 122 ----LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLr--- 191 (1255)
T KOG0444|consen 122 ----LEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLR--- 191 (1255)
T ss_pred ----hhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHh---
Confidence 5566677777777777776432 233466667777777777654444 345667777777777765432222
Q ss_pred cccCCCCccEEeccCcccc-ccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCC
Q 047285 276 WVFGLRNLVFIDLSSNQFQ-GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354 (552)
Q Consensus 276 ~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~ 354 (552)
.+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|++++|+++ .+... .+...
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~ 268 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWE 268 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc-HHHHh
Confidence 3445667777777776433 346777777888888888888775 45777788888888888888877 44333 55667
Q ss_pred ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCc-ccCchhhcCCCC
Q 047285 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS-GHLTNQLLQFKS 433 (552)
Q Consensus 355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~l~~ 433 (552)
+|++|+++.|+ ++ .+|..++.++ .|+.|.+.+|+++ .-+|..++.+.+
T Consensus 269 ~lEtLNlSrNQ-Lt-~LP~avcKL~-----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 269 NLETLNLSRNQ-LT-VLPDAVCKLT-----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhhccccch-hc-cchHHHhhhH-----------------------------HHHHHHhccCcccccCCccchhhhhh
Confidence 78888888887 65 6777777776 6777777777765 347889999999
Q ss_pred CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285 434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512 (552)
Q Consensus 434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 512 (552)
|+.+..++|.+. ..|+.+..|+.|+.|.|+.|++. .+|+.+.-++.|+.|++..|+-.-..|. .-..-++|+.-++
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK-P~da~~~lefYNI 393 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK-PNDARKKLEFYNI 393 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC-cchhhhcceeeec
Confidence 999999999987 89999999999999999999987 7999999999999999999976444443 1122245554444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-33 Score=259.20 Aligned_cols=406 Identities=26% Similarity=0.301 Sum_probs=272.5
Q ss_pred ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS 196 (552)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 196 (552)
++|++++.+..++.|+.++|++. .+|+.++.+..|+.++.++|.+. .+|+.++.+..|+.++..+|.+..+|..
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~--- 155 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPED--- 155 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchH---
Confidence 56677777777777777777777 57777777777777777777776 5677777777777777777777776644
Q ss_pred ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccc
Q 047285 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSW 276 (552)
Q Consensus 197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 276 (552)
+..+.+|..+++.+|++... +...-+++.|++|+...|.+. .+|..++.+.+|+.|++.+|.+.... .
T Consensus 156 ---~~~~~~l~~l~~~~n~l~~l---~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-----e 223 (565)
T KOG0472|consen 156 ---MVNLSKLSKLDLEGNKLKAL---PENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-----E 223 (565)
T ss_pred ---HHHHHHHHHhhccccchhhC---CHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-----C
Confidence 56667777777888777653 333334778888887777664 44556778888888888888776432 5
Q ss_pred ccCCCCccEEeccCccccccCchhhh-cccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285 277 VFGLRNLVFIDLSSNQFQGQIPIGLR-NLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355 (552)
Q Consensus 277 ~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 355 (552)
|..+..|++++++.|++. .+|.... .++++..||+.+|+++ ..|..+..+.+|++|++++|.++ .+|.. ++++ .
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s-Lgnl-h 298 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS-LGNL-H 298 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc-cccc-e
Confidence 667888888888888887 5555544 7888888888888886 45667777888888888888888 56665 8888 8
Q ss_pred cCEEeCCCCCCCCCCCchhHhhccc---Cceee-------cccccCCCCCcccccc---ccccCCCCCCEEEccCCcCcc
Q 047285 356 IETLDLSGNSKLGGKIPTSFARLCK---LTSVD-------LSLIDLSQDFSQVLDT---FSSCGAYALESLDLSICQISG 422 (552)
Q Consensus 356 L~~L~l~~n~~l~~~~~~~~~~l~~---L~~l~-------l~~~~~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~~~~ 422 (552)
|+.|.+.+|+ +. .+-..+-+.+. |+++. ++.............. .......+.+.|++++-+++.
T Consensus 299 L~~L~leGNP-lr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 299 LKFLALEGNP-LR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred eeehhhcCCc-hH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 8888888887 43 12111111110 01110 1111000000000001 111223355666666666663
Q ss_pred cCchhhcCCC---CCcEEECCCCccc-----------------------CCCcccccCCCCCCEEeCCCCcCCccCcccc
Q 047285 423 HLTNQLLQFK---SLHTLELGHNSLF-----------------------GPLPPALGELSSLKKLDLSNNMLNGFIPLSL 476 (552)
Q Consensus 423 ~~~~~l~~l~---~L~~L~L~~n~l~-----------------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 476 (552)
+|+....-. -.+..+++.|++. +-+|..+..+++|..|++++|.+. .+|..+
T Consensus 377 -VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 377 -VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred -CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 333222221 2455555555543 245566677888888888888877 688888
Q ss_pred cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccccC
Q 047285 477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552 (552)
Q Consensus 477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~~~ 552 (552)
+.+..|+.|+++.|++ ..+|+ .+.....++.+-.++|++...-|..+..+.+|+.||+.+|.++ .||..+++.
T Consensus 455 ~~lv~Lq~LnlS~NrF-r~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRF-RMLPE-CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred hhhhhhheeccccccc-ccchH-HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 8888888888888888 66777 5555566666666677777555556889999999999999999 999988763
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-31 Score=270.19 Aligned_cols=397 Identities=28% Similarity=0.357 Sum_probs=273.4
Q ss_pred ccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCcc
Q 047285 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192 (552)
Q Consensus 113 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 192 (552)
+..+.+|..+..+.+|+.|+++.|.+. ..|...+++.+|+++.|.+|.+. .+|..+..+.+|++|+++.|.++.+|.
T Consensus 55 n~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 55 NQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred cccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCch
Confidence 455667777777778888888887777 46777777788888888777776 677777788888888888877776663
Q ss_pred ccCC--------------ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCC-----
Q 047285 193 HVDS--------------LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANF----- 253 (552)
Q Consensus 193 ~~~~--------------~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l----- 253 (552)
.... +..++... .+++++..|.+.+ .++.....+.+ .|++++|.+... .+..+
T Consensus 132 ~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~--~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~ 203 (1081)
T KOG0618|consen 132 VIEVLTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGG--SFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEV 203 (1081)
T ss_pred hHHhhhHHHHHhhhcchhhhhhcccc-chhhhhhhhhccc--chhcchhhhhe--eeecccchhhhh---hhhhccchhh
Confidence 2110 01111111 4444444444443 33333333333 456666554411 11222
Q ss_pred ---------------CCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCC
Q 047285 254 ---------------SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318 (552)
Q Consensus 254 ---------------~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 318 (552)
++++.|+.++|.++... ......+|++++++.|.++ .+|.+++.+.+|+.+.+.+|.++
T Consensus 204 l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-----~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 204 LHCERNQLSELEISGPSLTALYADHNPLTTLD-----VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred hhhhhcccceEEecCcchheeeeccCcceeec-----cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence 34555555555555222 1234567888888888887 56688888888888888888884
Q ss_pred CCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhccc--CceeecccccCCCCCc
Q 047285 319 STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCK--LTSVDLSLIDLSQDFS 396 (552)
Q Consensus 319 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~--L~~l~l~~~~~~~~~~ 396 (552)
.+|..+....+|+.|.+..|++. .+|.. .+..+.|++|++..|. +. ..|+.+..... ++.+..+ .+.....
T Consensus 278 -~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~-L~-~lp~~~l~v~~~~l~~ln~s--~n~l~~l 350 (1081)
T KOG0618|consen 278 -ALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNN-LP-SLPDNFLAVLNASLNTLNVS--SNKLSTL 350 (1081)
T ss_pred -hhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhcc-cc-ccchHHHhhhhHHHHHHhhh--hcccccc
Confidence 55666677778888888888887 67776 7778999999999997 54 55554433221 1222222 2222222
Q ss_pred cccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccc
Q 047285 397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSL 476 (552)
Q Consensus 397 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 476 (552)
+ ...-...+.|+.|++.+|.++......+.++++|+.|+|++|++..-....+.+++.|++|+||+|+++ .+|.++
T Consensus 351 p---~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 351 P---SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred c---cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 2 122223457999999999999988889999999999999999998433345688999999999999998 789999
Q ss_pred cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC
Q 047285 477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH 540 (552)
Q Consensus 477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 540 (552)
.+++.|++|...+|++ ...|+ +..+++|+.+|++.|.++...-+.-...++|++||++||.
T Consensus 427 a~~~~L~tL~ahsN~l-~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQL-LSFPE--LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhhhhHHHhhcCCce-eechh--hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999999999999 56775 8899999999999999885433333333799999999996
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=3.8e-28 Score=246.77 Aligned_cols=382 Identities=29% Similarity=0.314 Sum_probs=274.4
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+.+.-+|+.||+++|.+. .+|..+..+++|+.|++++|.+. ..|....++.+|+++.|.+|.+..+|.. +.
T Consensus 41 ~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~------~~ 111 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS------IS 111 (1081)
T ss_pred hhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh------HH
Confidence 344455999999999998 68999999999999999999987 6789999999999999999998888765 78
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCC-------------------CCEEEcCCCCCCCCCCCcccCCCCCceeecC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPS-------------------LKVLKLTKCQLCHFPPLLSANFSSLKALHLA 262 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~-------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 262 (552)
.+++|+.|++++|.+...+.. +..++. ++.+++..|.+.+..+.....+.+ .|++.
T Consensus 112 ~lknl~~LdlS~N~f~~~Pl~---i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFGPIPLV---IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred hhhcccccccchhccCCCchh---HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 899999999999998875432 222333 445555555555555554444444 57777
Q ss_pred CCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce
Q 047285 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342 (552)
Q Consensus 263 ~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 342 (552)
+|.+. .. .+..+++|+.+....|++.... -.-++++.|+.++|.++...+. .-..+|++++++.|+++
T Consensus 187 ~N~~~-~~-----dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 187 YNEME-VL-----DLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred cchhh-hh-----hhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence 77665 21 3445666666666666654211 1125666667777666633221 12246777777777777
Q ss_pred eecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc
Q 047285 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG 422 (552)
Q Consensus 343 ~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 422 (552)
.+|.+ ++.+.+|+.++..+|. + ..+|..+....+|+.+.+.......... ...+...|++|+|..|.+..
T Consensus 255 -~lp~w-i~~~~nle~l~~n~N~-l-~~lp~ri~~~~~L~~l~~~~nel~yip~------~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 255 -NLPEW-IGACANLEALNANHNR-L-VALPLRISRITSLVSLSAAYNELEYIPP------FLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred -cchHH-HHhcccceEecccchh-H-HhhHHHHhhhhhHHHHHhhhhhhhhCCC------cccccceeeeeeehhccccc
Confidence 56655 7777777777777776 5 3566666666655555444333322111 11234567777777777653
Q ss_pred cCchhh-------------------------cCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccccc
Q 047285 423 HLTNQL-------------------------LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLG 477 (552)
Q Consensus 423 ~~~~~l-------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 477 (552)
..+..+ ...+.|+.|.+.+|.+++..-..+.++++|+.|+|++|++.......+.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 322111 1134578899999999988888899999999999999999844445688
Q ss_pred CCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 478 KLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 478 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
+++.|+.|+||+|++ ..+|. ...+++.|++|...+|++. .+| .+..+++|+.+|++.|+++.
T Consensus 405 kle~LeeL~LSGNkL-~~Lp~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKL-TTLPD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred chHHhHHHhcccchh-hhhhH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 999999999999999 66887 7999999999999999998 566 88889999999999999884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=8.7e-24 Score=238.64 Aligned_cols=342 Identities=21% Similarity=0.228 Sum_probs=234.4
Q ss_pred ccccCCCCCCEEeCCCCcCCC-----CccCcccCCCC-CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccc
Q 047285 120 PSLVDLKHLIHLDLSGNDFEG-----IQIPKYLGSLE-NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH 193 (552)
Q Consensus 120 ~~l~~l~~L~~L~Ls~n~~~~-----~~~p~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 193 (552)
.+|..+++|++|.+..+.... ..+|+.+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+..++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc
Confidence 347778888888886553211 13566666654 5888888888776 667666 568888888888877665432
Q ss_pred cCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccc
Q 047285 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQY 273 (552)
Q Consensus 194 ~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 273 (552)
+..+++|+.|+++++.... .++ .+..+++|++|++++|......|..+.++++|+.|++++|.....+|.
T Consensus 630 ------~~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~- 699 (1153)
T PLN03210 630 ------VHSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT- 699 (1153)
T ss_pred ------cccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-
Confidence 5667888888888764322 122 356778888888888876677777788888888888888765555554
Q ss_pred cccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce---e---ecCc
Q 047285 274 GSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ---G---TISS 347 (552)
Q Consensus 274 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~---~~~~ 347 (552)
.+ ++++|+.|++++|...+.+|.. .++|++|++++|.+.. +|..+ .+++|++|.+.++... + .++.
T Consensus 700 --~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 700 --GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred --cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccch
Confidence 33 6788888888888665555532 3678888888888753 44433 4677777777664321 1 1111
Q ss_pred cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ 427 (552)
Q Consensus 348 ~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 427 (552)
......++|+.|++++|. ..+.+|..++++++|+.+++..+..... .+ . ...+++|+.|++++|.....+|..
T Consensus 772 ~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP---~--~~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLET-LP---T--GINLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred hhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCe-eC---C--CCCccccCEEECCCCCcccccccc
Confidence 112335688888888887 5667888888888888777765432221 11 0 114568888888888655445532
Q ss_pred hcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccc
Q 047285 428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 428 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 492 (552)
.++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 367888888888887 6788888888888888888765556777777888888888888854
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1e-23 Score=238.08 Aligned_cols=347 Identities=20% Similarity=0.200 Sum_probs=238.1
Q ss_pred CcccCCCCCCCEEeCCCCc------CCCCCccccCCCC-CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcC
Q 047285 144 PKYLGSLENLRYLNLSGAK------FAGMIPLQLGNLS-NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216 (552)
Q Consensus 144 p~~~~~l~~L~~L~L~~~~------~~~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~ 216 (552)
+..|..|++|+.|.+..+. +...+|..+..++ +|+.|++.++.+..+|.. ....+|+.|+++++.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-------f~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-------FRPENLVKLQMQGSKL 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-------CCccCCcEEECcCccc
Confidence 3457788999999886553 2334676676664 689999988877776643 2457888888888877
Q ss_pred CCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc
Q 047285 217 SKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 296 (552)
.. ++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|. .+..+++|+.|++++|...+.
T Consensus 624 ~~---L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~---si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 624 EK---LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS---SIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cc---cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch---hhhccCCCCEEeCCCCCCcCc
Confidence 65 344556778888888887654444443 55667777777776665555555 566667777777777654445
Q ss_pred CchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHh
Q 047285 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFA 376 (552)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~ 376 (552)
+|..+ .+++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|.. + .+++|+.|.+.++. . ..+...+.
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~-~-~l~~L~~L~l~~~~-~-~~l~~~~~ 767 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN-L-RLENLDELILCEMK-S-EKLWERVQ 767 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc-c-cccccccccccccc-h-hhcccccc
Confidence 55544 5666777777766544444432 345666666666654 44443 2 45566666665543 1 01111110
Q ss_pred hcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCC
Q 047285 377 RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELS 456 (552)
Q Consensus 377 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 456 (552)
.+ .+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus 768 ~l---------------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 768 PL---------------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred cc---------------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 00 01111223579999999998888889999999999999999987666788765 789
Q ss_pred CCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEec
Q 047285 457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQL 536 (552)
Q Consensus 457 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 536 (552)
+|+.|++++|.....+|.. .++|+.|+|++|.+ ..+|. .+..+++|+.|++++|+-...+|.....+++|+.+++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i-~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI-EEVPW-WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCC-ccChH-HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 9999999998766566654 46899999999998 46787 7889999999999997766678878888889999999
Q ss_pred CCCC
Q 047285 537 RSCH 540 (552)
Q Consensus 537 ~~n~ 540 (552)
++|.
T Consensus 901 ~~C~ 904 (1153)
T PLN03210 901 SDCG 904 (1153)
T ss_pred CCCc
Confidence 9985
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=9.1e-21 Score=199.23 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=93.9
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
..-..|+++.+.++ .+|..+. ++|+.|++..|+++ .+|. .+++|++|++++|.++.+|. ..++
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~---------lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---------LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---------cccc
Confidence 45677888888887 5777665 47888888888887 4664 25788888888888776652 1356
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 285 (552)
|+.|++++|.+...+.. .+.|+.|++++|.+...+. ..++|+.|++++|++.+. +. ...+|+.
T Consensus 264 L~~L~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~------lp~~L~~ 326 (788)
T PRK15387 264 LLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA------LPSELCK 326 (788)
T ss_pred cceeeccCCchhhhhhc------hhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC------Ccccccc
Confidence 77777877777654322 2456677777777665432 134566666666655542 21 0124555
Q ss_pred EeccCccccccCchhhhcccCCcEEeccCCCCC
Q 047285 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318 (552)
Q Consensus 286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 318 (552)
|++++|.+++ +|. + ..+|++|++++|+++
T Consensus 327 L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 327 LWAYNNQLTS-LPT-L--PSGLQELSVSDNQLA 355 (788)
T ss_pred cccccCcccc-ccc-c--ccccceEecCCCccC
Confidence 5555555542 332 1 134555555555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2e-20 Score=196.73 Aligned_cols=263 Identities=24% Similarity=0.208 Sum_probs=166.9
Q ss_pred CCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285 151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP 230 (552)
Q Consensus 151 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 230 (552)
..-..|+++.+.++ .+|..+. ++|+.|++.+|.++.+|. .+++|++|++++|+++..+.. .+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsLP~l------p~ 262 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPVL------PP 262 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcccCc------cc
Confidence 45678999999998 6787775 489999999998887663 246788888888888865432 35
Q ss_pred CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEE
Q 047285 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 310 (552)
+|+.|++++|.+...+. ..++|+.|++++|+++.. |. .+++|+.|++++|.+++ +|.. ..+|+.|
T Consensus 263 sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~------~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L 327 (788)
T PRK15387 263 GLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV------LPPGLQELSVSDNQLAS-LPAL---PSELCKL 327 (788)
T ss_pred ccceeeccCCchhhhhh----chhhcCEEECcCCccccc-cc------cccccceeECCCCcccc-CCCC---ccccccc
Confidence 77888888887765433 124566777777766532 22 13567777777777663 3321 2346666
Q ss_pred eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390 (552)
Q Consensus 311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~ 390 (552)
++++|.+++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|. +. .+|..
T Consensus 328 ~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~-L~-~LP~l---------------- 380 (788)
T PRK15387 328 WAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR-LT-SLPAL---------------- 380 (788)
T ss_pred ccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccc-cc-cCccc----------------
Confidence 677766654 3321 135666677666666 34432 2455666666665 43 23321
Q ss_pred CCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc
Q 047285 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG 470 (552)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 470 (552)
..+|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++
T Consensus 381 ----------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 381 ----------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT- 435 (788)
T ss_pred ----------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-
Confidence 0156777777777764 3322 356777777777776 35543 235667777777776
Q ss_pred cCcccccCCCCCCeeeCCCcccceecCH
Q 047285 471 FIPLSLGKLSHLEYLDLSNNKLNASLSE 498 (552)
Q Consensus 471 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 498 (552)
.+|..+.++++|+.|+|++|++++..+.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5677777777777777777777766555
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-22 Score=186.41 Aligned_cols=379 Identities=23% Similarity=0.242 Sum_probs=199.0
Q ss_pred CEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccC-CCCCCCccccCCccccCCCCCCC
Q 047285 129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLE 207 (552)
Q Consensus 129 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~l~~L~ 207 (552)
..++|..|.|+.+ -|..|+.+++|+.|||+.|+|+..-|+.|..+++|-.|-+.+ |+|+.+|... |.++..|+
T Consensus 70 veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slq 143 (498)
T KOG4237|consen 70 VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQ 143 (498)
T ss_pred eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHH
Confidence 4455556666542 334556666666666666666655566666666655554444 5566555443 55566666
Q ss_pred EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC-cc--------cccccc
Q 047285 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL-FQ--------YGSWVF 278 (552)
Q Consensus 208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~--------~~~~~~ 278 (552)
.|.+.-|++.. .....+..+++|..|.+.+|.+..+....+..+..++.+.+..|.+...- .. ....++
T Consensus 144 rLllNan~i~C--ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 144 RLLLNANHINC--IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHhcChhhhcc--hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 66666655554 23444555666666666666665555555666666666555544321100 00 000011
Q ss_pred CCCC----------------------ccEE---eccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCC
Q 047285 279 GLRN----------------------LVFI---DLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE 332 (552)
Q Consensus 279 ~l~~----------------------L~~L---~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 332 (552)
.... ++.+ ..+.+...+.-| ..|..+++|++|++++|+++++-+.+|.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 1111 1111 111121222222 3466677777777777777777777777777777
Q ss_pred EEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCE
Q 047285 333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALES 412 (552)
Q Consensus 333 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 412 (552)
+|.+..|++. .+....|.++..|+.|++++|+ ++...|..|..+.+|..+.+-.+.. .|+| .|..
T Consensus 302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np~------------~CnC-~l~w 366 (498)
T KOG4237|consen 302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNPF------------NCNC-RLAW 366 (498)
T ss_pred hhhcCcchHH-HHHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCcc------------cCcc-chHH
Confidence 7777777766 4555556777777777777776 6655566665555333222221110 0000 1111
Q ss_pred E--EccCCcCcccCchhhcCCCCCcEEECCCCcccC---CCcccc---------cCCCCCCEEeCCCCcCCccCcccccC
Q 047285 413 L--DLSICQISGHLTNQLLQFKSLHTLELGHNSLFG---PLPPAL---------GELSSLKKLDLSNNMLNGFIPLSLGK 478 (552)
Q Consensus 413 L--~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~ 478 (552)
| ++......|..+- .....++.+.+++..+.. ..|+.. ..++.+.+..=..|.....+|..+
T Consensus 367 l~~Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i-- 442 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI-- 442 (498)
T ss_pred HHHHHhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--
Confidence 1 0111111111110 112335555555543321 111111 122233332222222222445443
Q ss_pred CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285 479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC 539 (552)
Q Consensus 479 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 539 (552)
...-..+++.+|.+ ..+|.. .+.+| .+|+++|++....-..|.++.+|.+|-+++|
T Consensus 443 P~d~telyl~gn~~-~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 PVDVTELYLDGNAI-TSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CchhHHHhcccchh-cccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 23456889999999 567773 55677 8999999998776677888889999988876
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=3.3e-19 Score=188.75 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=119.5
Q ss_pred CCCCcHHHHHHHHHhHhcCCCCCCCCC----CCCCCCCCCcccCc----------------eEecCCCCcEEEEEcCCCC
Q 047285 34 YVGCIDSEREALLKLKQDLIDPSNRLA----SWNTGDGDCCKWAG----------------VFCSNITGHVLQLSLQNPF 93 (552)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----~W~~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~ 93 (552)
..+-.++|.+.+.++.+.+..|. +.. +|+. ++++|.-+. |.|. ++.|+.+.+-+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~ 132 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPA-YADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESE 132 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCC-CCcccccCCcchhhheeeecCCceEEecC--CCccccccccccc
Confidence 34455778888999888887663 334 4886 678886554 5553 5677777776643
Q ss_pred ccCCC----Cchhhcc-cCccccCcccc----------ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC
Q 047285 94 SYLGG----DLREVKA-GSNYERSKLGG----------KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL 158 (552)
Q Consensus 94 ~~~~~----~l~~l~~-~~~~~~~~~~~----------~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L 158 (552)
..... +..+... ...+..+...+ .+.+++ ..+...|++++++++ .+|..+. ++|+.|++
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl--~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~L 206 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCL--KNNKTELRLKILGLT--TIPACIP--EQITTLIL 206 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhc--ccCceEEEeCCCCcC--cCCcccc--cCCcEEEe
Confidence 22111 1100000 00000011110 111222 246788999988888 5777654 57899999
Q ss_pred CCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcC
Q 047285 159 SGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238 (552)
Q Consensus 159 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~ 238 (552)
++|+++ .+|..+. ++|++|++++|.++.+|.. + ..+|+.|++++|.+...+. .+ ..+|+.|+++
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~------l--~~~L~~L~Ls~N~L~~LP~---~l--~s~L~~L~Ls 270 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLTSIPAT------L--PDTIQEMELSINRITELPE---RL--PSALQSLDLF 270 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCccccCChh------h--hccccEEECcCCccCcCCh---hH--hCCCCEEECc
Confidence 999888 5676554 5889999998888776532 1 2367778888777765432 22 1356777777
Q ss_pred CCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285 239 KCQLCHFPPLLSANFSSLKALHLAINNFD 267 (552)
Q Consensus 239 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 267 (552)
+|.+...+. .+ .++|+.|++++|+++
T Consensus 271 ~N~L~~LP~-~l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 271 HNKISCLPE-NL--PEELRYLSVYDNSIR 296 (754)
T ss_pred CCccCcccc-cc--CCCCcEEECCCCccc
Confidence 666664322 22 134555555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=3.7e-18 Score=180.88 Aligned_cols=246 Identities=26% Similarity=0.303 Sum_probs=116.9
Q ss_pred CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCC
Q 047285 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSS 255 (552)
Q Consensus 176 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 255 (552)
+...|+++++.++.+|.. + .++|+.|++++|.++..+. .+ .++|++|++++|.+...+.. + .++
T Consensus 179 ~~~~L~L~~~~LtsLP~~---I-----p~~L~~L~Ls~N~LtsLP~---~l--~~nL~~L~Ls~N~LtsLP~~-l--~~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC---I-----PEQITTLILDNNELKSLPE---NL--QGNIKTLYANSNQLTSIPAT-L--PDT 242 (754)
T ss_pred CceEEEeCCCCcCcCCcc---c-----ccCCcEEEecCCCCCcCCh---hh--ccCCCEEECCCCccccCChh-h--hcc
Confidence 456777777766665532 1 1356677777776665322 11 24666666666666544321 1 134
Q ss_pred CceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEE
Q 047285 256 LKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335 (552)
Q Consensus 256 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 335 (552)
|+.|++++|.+. .+|. .+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+++. |..+. ++|+.|+
T Consensus 243 L~~L~Ls~N~L~-~LP~---~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~ 310 (754)
T PRK15370 243 IQEMELSINRIT-ELPE---RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLN 310 (754)
T ss_pred ccEEECcCCccC-cCCh---hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHH
Confidence 555555555554 2222 22 134555555555554 2343332 3455555555555432 22111 2444555
Q ss_pred ccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285 336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415 (552)
Q Consensus 336 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 415 (552)
+++|.++ .+|.. + .++|+.|++++|. +++ +|..+. ++|+.|++
T Consensus 311 Ls~N~Lt-~LP~~-l--~~sL~~L~Ls~N~-Lt~-LP~~l~-------------------------------~sL~~L~L 353 (754)
T PRK15370 311 VQSNSLT-ALPET-L--PPGLKTLEAGENA-LTS-LPASLP-------------------------------PELQVLDV 353 (754)
T ss_pred hcCCccc-cCCcc-c--cccceeccccCCc-ccc-CChhhc-------------------------------CcccEEEC
Confidence 5555444 23322 1 1344555555544 331 222110 14555566
Q ss_pred cCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccc----ccCCCCCCeeeCCCcc
Q 047285 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS----LGKLSHLEYLDLSNNK 491 (552)
Q Consensus 416 s~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~ 491 (552)
++|+++. +|..+ .++|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|.. ...++++..|++.+|+
T Consensus 354 s~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 354 SKNQITV-LPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 6555552 33333 245556666665555 3444332 24555555555554 33332 2223555555555555
Q ss_pred cc
Q 047285 492 LN 493 (552)
Q Consensus 492 l~ 493 (552)
++
T Consensus 427 ls 428 (754)
T PRK15370 427 FS 428 (754)
T ss_pred cc
Confidence 53
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.9e-19 Score=177.28 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=39.4
Q ss_pred EEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCC----CccccCCCCCCCEEeccCCCCC
Q 047285 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM----IPLQLGNLSNLQYLDLSGTFLS 188 (552)
Q Consensus 130 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~n~l~ 188 (552)
.|+|..+.+++...+..+..+++|++|++++|.++.. ++..+...++|++++++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 4666677776445566666777788888888877432 4555666777777777776544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.3e-19 Score=178.36 Aligned_cols=284 Identities=25% Similarity=0.247 Sum_probs=144.0
Q ss_pred EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC----CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc
Q 047285 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF----PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL 283 (552)
Q Consensus 208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 283 (552)
.|+|..+.+.+. .+...+..+++|++|+++++.+++. ++..+...+.++.++++++.+.+....
T Consensus 2 ~l~L~~~~l~~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~----------- 69 (319)
T cd00116 2 QLSLKGELLKTE-RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG----------- 69 (319)
T ss_pred ccccccCccccc-chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH-----------
Confidence 456666666532 3444455556677777777765432 122223334455555544433310000
Q ss_pred cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC---CCCEEEccCcccee----ecCccccCCC-Cc
Q 047285 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN---DLEFLSVAWNSLQG----TISSVGLENL-TS 355 (552)
Q Consensus 284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~l~~n~l~~----~~~~~~l~~l-~~ 355 (552)
...++..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+ .+... +..+ ++
T Consensus 70 ----------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~ 138 (319)
T cd00116 70 ----------LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPA 138 (319)
T ss_pred ----------HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCC
Confidence 011223344455566666665555543333333222 36666666665542 11111 3344 66
Q ss_pred cCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----CchhhcCC
Q 047285 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTNQLLQF 431 (552)
Q Consensus 356 L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~l~~l 431 (552)
|+.|++++|. +++.....+... +..++.|++|++++|.+++. ++..+..+
T Consensus 139 L~~L~L~~n~-l~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 139 LEKLVLGRNR-LEGASCEALAKA-------------------------LRANRDLKELNLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred ceEEEcCCCc-CCchHHHHHHHH-------------------------HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence 7777777776 553322221110 01223566677776666632 22334445
Q ss_pred CCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCccccc-----CCCCCCeeeCCCcccce----ecCH
Q 047285 432 KSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLG-----KLSHLEYLDLSNNKLNA----SLSE 498 (552)
Q Consensus 432 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~ 498 (552)
++|+.|++++|.+.+. ++..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+..
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 5777777777766532 233445566777777777776642221111 23577777777777652 1222
Q ss_pred HhhhcCCCCCEEEccCCeeeEE----cCCCCcCc-ccccEEecCCCCC
Q 047285 499 IHFVNLTKLTWFSASGNSLILK----FNPNWVPP-FQLETLQLRSCHL 541 (552)
Q Consensus 499 ~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~ 541 (552)
.+..+++|+++++++|.+... +...+... ..|+++++.+|.+
T Consensus 273 -~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 273 -VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred -HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 445556777777777777644 33333333 4677777776653
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-19 Score=168.37 Aligned_cols=283 Identities=22% Similarity=0.197 Sum_probs=179.7
Q ss_pred CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccC-ccccccCchhhhcccCCcE
Q 047285 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRH 309 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~ 309 (552)
.-.++++..|.++.+++..|..+++|+.|++++|+++...|+ .|..++++..|-+.+ |+++......|+.+..++.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~---AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD---AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChH---hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456777777888888888888888888888888888777777 677777766665554 7777544456777778888
Q ss_pred EeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC-----------CchhHhhc
Q 047285 310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK-----------IPTSFARL 378 (552)
Q Consensus 310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~-----------~~~~~~~l 378 (552)
|.+.-|++.-.....|..++++..|.+..|.+. .++...+..+..++.+.+..|+.+..- .|..++..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 888777777777777777788888888777776 555545777777777777777621110 11111111
Q ss_pred ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCC
Q 047285 379 CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSS 457 (552)
Q Consensus 379 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 457 (552)
....-..+............. .+....+..=-.+.+...+..| ..|..+++|++|++++|++++.-+.+|....+
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf----~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKF----LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred eecchHHHHHHHhcccchhhh----hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 111111111111110000000 0000111111122333333444 35777888888888888888777777888888
Q ss_pred CCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 458 LKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 458 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
+++|.|..|++...-...|.++..|++|+|.+|+++..-|. .|..+.+|.+|.|-.|++.+.+-
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccceeeeeehccCcccCccc
Confidence 88888888887644455677788888888888888766666 77888888888888888776643
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.7e-18 Score=139.75 Aligned_cols=162 Identities=28% Similarity=0.382 Sum_probs=121.0
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+.++.+.+.|.+|+|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++..+|.. |+
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg------fg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG------FG 99 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc------cC
Confidence 566778888899999988 57888888999999999999887 6888888899999998888876665543 45
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.++.|+.||+++|++.. ...|..|..+..|+.|.++.|.++-. |. .+++++
T Consensus 100 s~p~levldltynnl~e-------------------------~~lpgnff~m~tlralyl~dndfe~l-p~---dvg~lt 150 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNE-------------------------NSLPGNFFYMTTLRALYLGDNDFEIL-PP---DVGKLT 150 (264)
T ss_pred CCchhhhhhcccccccc-------------------------ccCCcchhHHHHHHHHHhcCCCcccC-Ch---hhhhhc
Confidence 55556666666655544 23444555566666666666665532 22 677888
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP 322 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 322 (552)
+|+.|.+++|.+. .+|..++.++.|++|.+.+|+++...|
T Consensus 151 ~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 151 NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 9999999999887 688889999999999999998875433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.3e-17 Score=135.24 Aligned_cols=163 Identities=28% Similarity=0.477 Sum_probs=117.0
Q ss_pred CCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcccccccccc
Q 047285 326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405 (552)
Q Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 405 (552)
.++.+++.|.+++|+++ .+|.. +..+.+|+.|++++|+ +. .+|..+.+++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnq-ie-~lp~~issl~-------------------------- 79 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQ-IE-ELPTSISSLP-------------------------- 79 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccch-hh-hcChhhhhch--------------------------
Confidence 34566777778888877 55555 6777788888888876 43 5666666666
Q ss_pred CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY 484 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 484 (552)
+|+.|+++-|++. ..|..|+.++.|+.||+..|++.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.
T Consensus 80 ---klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 80 ---KLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred ---hhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence 5666666666655 567778888888888888877763 46777777778888888888877 67777788888888
Q ss_pred eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285 485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV 526 (552)
Q Consensus 485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 526 (552)
|.+.+|.+ -++|. .++.+++|++|++.+|+++. +|+.+.
T Consensus 155 l~lrdndl-l~lpk-eig~lt~lrelhiqgnrl~v-lppel~ 193 (264)
T KOG0617|consen 155 LSLRDNDL-LSLPK-EIGDLTRLRELHIQGNRLTV-LPPELA 193 (264)
T ss_pred EeeccCch-hhCcH-HHHHHHHHHHHhcccceeee-cChhhh
Confidence 88888877 34666 57778888888888888773 344443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=7.1e-14 Score=147.92 Aligned_cols=129 Identities=37% Similarity=0.591 Sum_probs=109.5
Q ss_pred CCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCc----ccCceEecC--CC--CcEEEEEcCCCCccCCCCchhhccc
Q 047285 35 VGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCC----KWAGVFCSN--IT--GHVLQLSLQNPFSYLGGDLREVKAG 106 (552)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c----~w~gv~c~~--~~--~~v~~L~l~~~~~~~~~~l~~l~~~ 106 (552)
..+.++|.+||+.+|+++..+.. .+|+ +.+|+ .|.||.|.. .. .+|+.|+|++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------- 427 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------- 427 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCC---------------
Confidence 35667899999999999875532 4897 43443 799999952 22 2589999988
Q ss_pred CccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCC
Q 047285 107 SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~ 186 (552)
+.+.|.+|..++++++|++|+|++|.+.+ .+|..++.+++|++|+|++|++++.+|..++++++|++|++++|.
T Consensus 428 -----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 428 -----QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred -----CCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 48889999999999999999999999998 599999999999999999999999999999999999999999987
Q ss_pred CC
Q 047285 187 LS 188 (552)
Q Consensus 187 l~ 188 (552)
+.
T Consensus 502 l~ 503 (623)
T PLN03150 502 LS 503 (623)
T ss_pred cc
Confidence 65
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=7.7e-11 Score=125.00 Aligned_cols=113 Identities=32% Similarity=0.529 Sum_probs=94.3
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|++++|.+++.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888888899999999998888888888888899999999998888888888888889999999
Q ss_pred CcccceecCHHhhhc-CCCCCEEEccCCeeeEEcC
Q 047285 489 NNKLNASLSEIHFVN-LTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~ 522 (552)
+|+++|.+|. .+.. ..++..+++.+|+..+..|
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence 9988888887 4554 3566788888887666544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.1e-12 Score=118.99 Aligned_cols=212 Identities=26% Similarity=0.246 Sum_probs=115.5
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCC--CccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM--IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+++.|+...|.++.+...........|++++.|||+.|=+..- +-.....+|+|+.|+++.|.+...-.... -
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----T 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----h
Confidence 45777777777777665321113556677777777777755432 22334567777777777776543211100 1
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 280 (552)
..++.|+.|.++.|.++ +.++...+..+|+|+.|++..|............+..|+.|++++|++...... ...+.+
T Consensus 194 ~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--~~~~~l 270 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--YKVGTL 270 (505)
T ss_pred hhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--cccccc
Confidence 24667777777777776 445566666777777777777753333333344556666777766665433211 134456
Q ss_pred CCccEEeccCcccccc-Cchh-----hhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccc
Q 047285 281 RNLVFIDLSSNQFQGQ-IPIG-----LRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSL 341 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l 341 (552)
+.|+.|+++.+.+... .|+. ...+++|++|++..|++...- ...+..+++|+.|.+..|.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 6666666666655422 1111 233455555555555553211 12223334444444444444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.4e-12 Score=124.89 Aligned_cols=194 Identities=29% Similarity=0.398 Sum_probs=153.3
Q ss_pred cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCcee
Q 047285 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSV 384 (552)
Q Consensus 305 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l 384 (552)
..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|.. +.++..|+.++++.|+ ++ .+|..++.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~Nq-lS-~lp~~lC~lp----- 144 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQ-LS-HLPDGLCDLP----- 144 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccch-hh-cCChhhhcCc-----
Confidence 34456778888876 45666677778888888888876 67766 7888888888888887 54 6777777776
Q ss_pred ecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCC
Q 047285 385 DLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS 464 (552)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 464 (552)
|+.|.+++|+++ .+|+.++..++|..||.+.|++. .+|..++.+.+|+.|.+.
T Consensus 145 -------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 145 -------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred -------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 899999999988 57778888899999999999998 788889999999999999
Q ss_pred CCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc---CcccccEEecCCCC
Q 047285 465 NNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV---PPFQLETLQLRSCH 540 (552)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~~~L~~L~l~~n~ 540 (552)
.|++. .+|..+..++ |..||++.|++ ..+|- .|.+++.|++|-|.+|++... |-.++ ...-.++|+..-|+
T Consensus 198 Rn~l~-~lp~El~~Lp-Li~lDfScNki-s~iPv-~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSLP-LIRLDFSCNKI-SYLPV-DFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhh-hCCHHHhCCc-eeeeecccCce-eecch-hhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 99988 5777777554 89999999999 66887 799999999999999998732 22221 22346788888885
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=2.3e-12 Score=126.00 Aligned_cols=198 Identities=31% Similarity=0.461 Sum_probs=162.3
Q ss_pred CCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCE
Q 047285 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358 (552)
Q Consensus 279 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 358 (552)
.+..-...+++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|+++ ..|.. +..+ -|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-lC~l-pLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG-LCDL-PLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh-hhcC-ccee
Confidence 3455667899999998 88999999999999999999886 56788999999999999999998 66665 5555 4899
Q ss_pred EeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEE
Q 047285 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLE 438 (552)
Q Consensus 359 L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~ 438 (552)
|-+++|+ ++ .+|+.++... .|..||.+.|.+. .+|..++++.+|+.|.
T Consensus 148 li~sNNk-l~-~lp~~ig~~~-----------------------------tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 148 LIVSNNK-LT-SLPEEIGLLP-----------------------------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred EEEecCc-cc-cCCcccccch-----------------------------hHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 9999997 54 6677666444 7888999999987 5777899999999999
Q ss_pred CCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhc-CCCCCEEEccCCe
Q 047285 439 LGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN-LTKLTWFSASGNS 516 (552)
Q Consensus 439 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~ 516 (552)
+..|++. .+|..+..+ .|..||++.|++. .+|..|.++..|++|-|.+|++......+...+ ..-.++|+..-|+
T Consensus 196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9999998 677777755 6999999999998 899999999999999999999965444433333 3444788888774
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-11 Score=117.03 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=48.9
Q ss_pred cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc--CchhhhcccCCcEEeccCCCCCCCCCccC-CC
Q 047285 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPGWL-SK 327 (552)
Q Consensus 251 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~ 327 (552)
.++++|+...+.+......... .....+++++.|+|+.|-+... +......+|+|+.|.++.|++.-...... ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3455566666655544322211 1334456666666666544421 12233445556666666555542221110 12
Q ss_pred CCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 328 FNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 328 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+++|+.|.++.|.++..-....+..+|+|+.|++..|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 3444444444444442222222333444444444444
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=8.7e-12 Score=115.23 Aligned_cols=200 Identities=24% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCCCccEEeccCccccccCchh----hhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCC
Q 047285 279 GLRNLVFIDLSSNQFQGQIPIG----LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354 (552)
Q Consensus 279 ~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~ 354 (552)
.+++|++++||+|.+...-++. +..+..|++|.+.+|.+.......++. .|..+. -......-+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~ 157 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKP 157 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCc
Confidence 4456666666666654333322 234556666666666554221111110 000000 000123345
Q ss_pred ccCEEeCCCCCCCCCCC----chhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----Cch
Q 047285 355 SIETLDLSGNSKLGGKI----PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTN 426 (552)
Q Consensus 355 ~L~~L~l~~n~~l~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~ 426 (552)
.|+++...+|. +.... ...|...+.|+.+.+..+.+...+. ......+.+++.|+.||+.+|.++.. +..
T Consensus 158 ~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 158 KLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred ceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 66666666665 33221 1233334444444444333333222 11122333555667777777666532 233
Q ss_pred hhcCCCCCcEEECCCCcccCCCcccc-----cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCccc
Q 047285 427 QLLQFKSLHTLELGHNSLFGPLPPAL-----GELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 427 ~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 492 (552)
.+..+++|+.|++++|.+...-...+ ...|+|++|.+.+|.++.. +...+...|.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44556666677777666653322222 2356666666666666421 222334456666666666666
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.7e-11 Score=108.66 Aligned_cols=128 Identities=30% Similarity=0.255 Sum_probs=98.9
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
.|+++|+++|.|+ .+.++..-.|+++.|++++|.+. .+ ..+..+++|+.||+++|.++ .+..+-..+-++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 6888999999887 45566777888999999999887 33 33788889999999999887 455555567788999999
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEE-cCCCCcCcccccEEecCCCCCCC
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILK-FNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
+|.+ ..+. .++.+-+|..||+++|+|... -...+++++-|+.+.+.+|++.+
T Consensus 361 ~N~i-E~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKI-ETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhH-hhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9988 3343 377778888999999988632 23567888889999999998883
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=8.9e-11 Score=101.92 Aligned_cols=127 Identities=32% Similarity=0.435 Sum_probs=45.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
+.+...+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++. ++ .+..+++|++|++++|.++.++.. +
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~------l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEG------L 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH------H
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccc------h
Confidence 4455678899999998874 3 3455 57889999999998873 33 577788889999998888775321 2
Q ss_pred -CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC---CcccCCCCCceee
Q 047285 201 -SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP---LLSANFSSLKALH 260 (552)
Q Consensus 201 -~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~ 260 (552)
..+++|++|++++|++..... ...+..+++|++|++.+|+++.... ..+..+|+|+.||
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred HHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 357788888888888877644 3455677888888888887764432 2233445555554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.9e-10 Score=114.32 Aligned_cols=197 Identities=35% Similarity=0.434 Sum_probs=114.8
Q ss_pred EEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCC-CCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLS-NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH 208 (552)
Q Consensus 130 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~ 208 (552)
.++++.+.+.. .+..+..++.++.|++.++.++ .+|.....+. +|+.|++++|.+..++. .+..+++|+.
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~------~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPS------PLRNLPNLKN 167 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhh------hhhccccccc
Confidence 56777766642 2344555677788888888777 5666666664 78888888777766531 2667777777
Q ss_pred EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEec
Q 047285 209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDL 288 (552)
Q Consensus 209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L 288 (552)
|++++|++... +......+.|+.|++++|.+...++.. .....|+++.+
T Consensus 168 L~l~~N~l~~l---~~~~~~~~~L~~L~ls~N~i~~l~~~~----------------------------~~~~~L~~l~~ 216 (394)
T COG4886 168 LDLSFNDLSDL---PKLLSNLSNLNNLDLSGNKISDLPPEI----------------------------ELLSALEELDL 216 (394)
T ss_pred cccCCchhhhh---hhhhhhhhhhhheeccCCccccCchhh----------------------------hhhhhhhhhhh
Confidence 77777777653 222235566666777766665544421 12233555555
Q ss_pred cCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCC
Q 047285 289 SSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLG 368 (552)
Q Consensus 289 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~ 368 (552)
++|... ..+..+..+.++..+.+.+|++... +..++.++++++|++++|.++ .++. ++...+++.|+++++. +.
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~-~~ 290 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNS-LS 290 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcc-cc
Confidence 555322 2334455555555555555554432 344555566666666666665 3333 5566666667766665 44
Q ss_pred CCCc
Q 047285 369 GKIP 372 (552)
Q Consensus 369 ~~~~ 372 (552)
...+
T Consensus 291 ~~~~ 294 (394)
T COG4886 291 NALP 294 (394)
T ss_pred ccch
Confidence 4433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.1e-10 Score=114.18 Aligned_cols=199 Identities=36% Similarity=0.492 Sum_probs=129.1
Q ss_pred cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC-CCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN-DLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362 (552)
Q Consensus 284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~ 362 (552)
..+++..+.+...+ ..+..++.++.|++.+|.++... ....... +|+.|++++|++. .++.. +..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence 35777777664332 23455577888888888876543 3344453 7888888888776 44433 6677888888888
Q ss_pred CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285 363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442 (552)
Q Consensus 363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n 442 (552)
+|+ ++ .+|...+.. +.|+.|++++|.+. .+|........|++|.+++|
T Consensus 172 ~N~-l~-~l~~~~~~~-----------------------------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 172 FND-LS-DLPKLLSNL-----------------------------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred Cch-hh-hhhhhhhhh-----------------------------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 876 44 333333222 26777788888777 34444445556778888877
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
.+. ..+..+..+.++..+.+.+|++. .++..+..++++++|++++|.++. ++. +....+++.|++++|.+....|
T Consensus 220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccch
Confidence 544 45556677777777777777766 335666677777788887777743 332 6667777777777777765554
Q ss_pred C
Q 047285 523 P 523 (552)
Q Consensus 523 ~ 523 (552)
.
T Consensus 295 ~ 295 (394)
T COG4886 295 L 295 (394)
T ss_pred h
Confidence 3
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=2.4e-11 Score=112.36 Aligned_cols=249 Identities=20% Similarity=0.188 Sum_probs=136.6
Q ss_pred ccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCC-cch-------hhhcCCCCCCCEEEcCCCC
Q 047285 170 QLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA-SDW-------LLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 170 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~-~~~-------~~~~~~~~~L~~L~l~~n~ 241 (552)
.+..+..++.+++++|.++.-... ..-+.+.+.++|+..++++--.... ..+ ...+..+|+|++|+|++|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~-~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAAR-AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHH-HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 455667778888888765431110 0011244555666666664321110 011 1223445566666666665
Q ss_pred CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc-------------CchhhhcccCCc
Q 047285 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ-------------IPIGLRNLTSLR 308 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------------~~~~l~~l~~L~ 308 (552)
+....+.. +...+.++..|++|.|.+|.+... .....+.-++|+
T Consensus 104 ~G~~g~~~-----------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 104 FGPKGIRG-----------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred cCccchHH-----------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 54332221 111344556666666666654311 111223446778
Q ss_pred EEeccCCCCCCCCC----ccCCCCCCCCEEEccCccceee---cCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccC
Q 047285 309 HLDLRFNYFNSTTP----GWLSKFNDLEFLSVAWNSLQGT---ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL 381 (552)
Q Consensus 309 ~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 381 (552)
++...+|++..... ..+...+.|+.+.+..|.+... ....++..+++|++||+.+|. ++......+...
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka--- 236 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA--- 236 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH---
Confidence 88888877764432 2345567788888887766421 223346778888888888887 654433332221
Q ss_pred ceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhh-----cCCCCCcEEECCCCcccC----CCcccc
Q 047285 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL-----LQFKSLHTLELGHNSLFG----PLPPAL 452 (552)
Q Consensus 382 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l 452 (552)
++.++.|++|++++|.+...-...+ ...|+|+.|.+.+|.++- .+...+
T Consensus 237 ----------------------L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~ 294 (382)
T KOG1909|consen 237 ----------------------LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM 294 (382)
T ss_pred ----------------------hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence 1122367777777777664433222 225778888888887762 123344
Q ss_pred cCCCCCCEEeCCCCcC
Q 047285 453 GELSSLKKLDLSNNML 468 (552)
Q Consensus 453 ~~l~~L~~L~L~~n~l 468 (552)
...+.|+.|++++|.+
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 5577888888888887
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.1e-10 Score=123.03 Aligned_cols=106 Identities=32% Similarity=0.363 Sum_probs=57.7
Q ss_pred CCCCEEeCCCCc--CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285 126 KHLIHLDLSGND--FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 126 ~~L~~L~Ls~n~--~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 203 (552)
+.|++|-+.+|. +.. ...++|..++.|++|||++|.--+.+|..|+++-+||+|+++++.+..+|.. +.++
T Consensus 545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~------l~~L 617 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG------LGNL 617 (889)
T ss_pred CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH------HHHH
Confidence 356666666654 332 1233455666666666666655556666666666666666666666555543 5555
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCC
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n 240 (552)
++|.+|++..+..... ++.....+++||+|.+...
T Consensus 618 k~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred Hhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 5566665555433221 1223334555555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=5.7e-10 Score=96.92 Aligned_cols=129 Identities=31% Similarity=0.404 Sum_probs=40.9
Q ss_pred CCCCCCCEEeCCCCcCCCCCccccC-CCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285 148 GSLENLRYLNLSGAKFAGMIPLQLG-NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226 (552)
Q Consensus 148 ~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 226 (552)
.+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++.++ .+..++.|+.|++++|.++..... ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-------~l~~L~~L~~L~L~~N~I~~i~~~--l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-------GLPGLPRLKTLDLSNNRISSISEG--LD 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-------T----TT--EEE--SS---S-CHH--HH
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-------CccChhhhhhcccCCCCCCccccc--hH
Confidence 345567888888888873 3 3455 4778888888888776643 255677777777777777664211 11
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccC---chhhhc
Q 047285 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI---PIGLRN 303 (552)
Q Consensus 227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~l~~ 303 (552)
..+|+|++|++++|.+.+.... ..+..+++|++|++.+|+++... ...+..
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l--------------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNEL--------------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCC--------------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred HhCCcCCEEECcCCcCCChHHh--------------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 2356666666666665432210 14556677777777777766331 123456
Q ss_pred ccCCcEEecc
Q 047285 304 LTSLRHLDLR 313 (552)
Q Consensus 304 l~~L~~L~l~ 313 (552)
+|+|+.||-.
T Consensus 139 lP~Lk~LD~~ 148 (175)
T PF14580_consen 139 LPSLKVLDGQ 148 (175)
T ss_dssp -TT-SEETTE
T ss_pred cChhheeCCE
Confidence 7777777654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2e-10 Score=104.03 Aligned_cols=130 Identities=26% Similarity=0.311 Sum_probs=78.7
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
....|+.+|+|+|.++. +..+..-.|.++.|+++.|.+..... ++.+++|+.||+++|.++... . |-..+-
T Consensus 282 TWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-G---wh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-G---WHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-h---hHhhhc
Confidence 34557777777777765 34445556777777777777665443 556667777777776654321 1 444566
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccce
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQ 342 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 342 (552)
+++.|.|+.|.+.. ...++.+-+|..||+++|++.... ...++++|.|+++.+.+|.+.
T Consensus 353 NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77777777776642 234566666777777777665322 234555556666655555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.5e-09 Score=117.82 Aligned_cols=279 Identities=23% Similarity=0.218 Sum_probs=148.8
Q ss_pred cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC--CCCCCCCcccCCCCCceeecCCCCCCCCCccccccc
Q 047285 200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ--LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV 277 (552)
Q Consensus 200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 277 (552)
.......+.+.+-+|.+..... -..++.|++|-+.+|. +.......|..++.|++||+++|.-.+.+|. .+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~---~I 591 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS---SI 591 (889)
T ss_pred ccchhheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh---HH
Confidence 3344555666666665543211 1245578888888876 5555566677788888888888776677777 77
Q ss_pred cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce-eecCccccCCCCcc
Q 047285 278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ-GTISSVGLENLTSI 356 (552)
Q Consensus 278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~l~~L 356 (552)
+.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....++.....+.+|++|.+...... +......+..+.+|
T Consensus 592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 78888888888888877 67888888888888888877765555666666888888887654311 11111114455555
Q ss_pred CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcC------
Q 047285 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ------ 430 (552)
Q Consensus 357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~------ 430 (552)
+.+...... . .+-..+..+.+|.......... +........+...+.+|+.|.+.++.+..........
T Consensus 671 ~~ls~~~~s-~--~~~e~l~~~~~L~~~~~~l~~~--~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~ 745 (889)
T KOG4658|consen 671 ENLSITISS-V--LLLEDLLGMTRLRSLLQSLSIE--GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLC 745 (889)
T ss_pred hhheeecch-h--HhHhhhhhhHHHHHHhHhhhhc--ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhh
Confidence 555554332 1 1222222233222111111100 0000111122334556777777777665322211111
Q ss_pred CCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccc
Q 047285 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 431 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 492 (552)
++++..+.+.+|... ..+.+....++|+.|.+..+.....+......+..+..+-+..+.+
T Consensus 746 f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 746 FPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred HHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 222333333333222 2223333456666677666665444443334444444443444433
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.84 E-value=4.4e-09 Score=68.44 Aligned_cols=40 Identities=48% Similarity=0.981 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHhcCC-CCCCCCCCCCCCC-CCCcccCceEec
Q 047285 39 DSEREALLKLKQDLI-DPSNRLASWNTGD-GDCCKWAGVFCS 78 (552)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~-~~~c~w~gv~c~ 78 (552)
++|++||++||+++. ++.+.+.+|+... .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 4668899999743 799999999995
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-09 Score=110.66 Aligned_cols=103 Identities=36% Similarity=0.418 Sum_probs=65.8
Q ss_pred CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCC
Q 047285 253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE 332 (552)
Q Consensus 253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 332 (552)
+..++.+.+..|.+.... . .+..+++|+.+++.+|.+.. +...+..+++|++|++++|.++...+ +..++.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~-~---~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL-N---HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK 143 (414)
T ss_pred hHhHHhhccchhhhhhhh-c---ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchh
Confidence 344444555555444311 1 35566777788888877763 22226667888888888888776543 45566688
Q ss_pred EEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285 333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365 (552)
Q Consensus 333 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 365 (552)
.|++++|.+. .+.. +..++.|+.+++++|.
T Consensus 144 ~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 144 ELNLSGNLIS-DISG--LESLKSLKLLDLSYNR 173 (414)
T ss_pred hheeccCcch-hccC--CccchhhhcccCCcch
Confidence 8888888776 3333 5557788888888886
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=9.9e-09 Score=73.12 Aligned_cols=59 Identities=39% Similarity=0.508 Sum_probs=32.3
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 467 (552)
+|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555444555555555555555555554444455555555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=9e-09 Score=73.35 Aligned_cols=59 Identities=42% Similarity=0.642 Sum_probs=29.2
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcc
Q 047285 433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491 (552)
Q Consensus 433 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 491 (552)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333444555555555555555543334444555555555555544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.1e-09 Score=109.10 Aligned_cols=129 Identities=33% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 203 (552)
.+..++.+++..|.+. .+-..++.+++|++|++.+|++.. +...+..+++|++|++++|.|+.+.. +..+
T Consensus 70 ~l~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-------l~~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-------LSTL 139 (414)
T ss_pred HhHhHHhhccchhhhh--hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-------hhhc
Confidence 4555666666666665 233445666777777777777763 33236667777777777776655432 4555
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC-CcccCCCCCceeecCCCCCC
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP-LLSANFSSLKALHLAINNFD 267 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 267 (552)
+.|+.|++++|.++.+.. +..++.|+.+++++|.+....+ . ...+.+++.+++..|.+.
T Consensus 140 ~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 557777777776665422 2235666666666666655444 2 344455555555555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3e-10 Score=102.84 Aligned_cols=183 Identities=26% Similarity=0.233 Sum_probs=102.4
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCC-CCCCccccCCccccCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF-LSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~l~~ 205 (552)
.|++|||+...++..++-..+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+. +++..... .+.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l----l~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL----LLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH----HHHhhhh
Confidence 478888888777654555666777888888888888877777777777778888877653 33321110 1344555
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 285 (552)
|..|++++|.+....--.....--+ +|+.|+++++.-.-.......-...+++|.+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise------------------------~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISE------------------------TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhch------------------------hhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 5555555554433210001111123 3444444432111000010002346777777
Q ss_pred EeccCcc-ccccCchhhhcccCCcEEeccCCCCCCCCCcc---CCCCCCCCEEEccCc
Q 047285 286 IDLSSNQ-FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGW---LSKFNDLEFLSVAWN 339 (552)
Q Consensus 286 L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n 339 (552)
|||++|. ++......+.+++.|++|.++.|+. .+|.. +...|.|.+|++.++
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7777763 3333344566677788888877763 34433 356678888887765
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-09 Score=98.46 Aligned_cols=182 Identities=21% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCccEEeccCcccccc-CchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcc-ceeecCccccCCCCccCE
Q 047285 281 RNLVFIDLSSNQFQGQ-IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS-LQGTISSVGLENLTSIET 358 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~ 358 (552)
+.|+++||++..++.. +-..+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..-....+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3578888887766532 23346778888888888888888777777777888888888753 332222223667888888
Q ss_pred EeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcC---cccCchhhcCCCCCc
Q 047285 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI---SGHLTNQLLQFKSLH 435 (552)
Q Consensus 359 L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~---~~~~~~~l~~l~~L~ 435 (552)
|+++.|..++..+-..+.+.. ++|..|+++++.- ...+..-...+++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~his----------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS----------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred cCchHhhccchhhhHHHhhhc----------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 888888633322222222222 2677777777631 112222335678888
Q ss_pred EEECCCCcc-cCCCcccccCCCCCCEEeCCCCcCCccCccc---ccCCCCCCeeeCCCccc
Q 047285 436 TLELGHNSL-FGPLPPALGELSSLKKLDLSNNMLNGFIPLS---LGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 436 ~L~L~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l 492 (552)
.|||++|.. +...-..|..++.|++|.++.|... +|.. +...|+|.+|++.+|--
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 888887753 3333445667888888888888743 4443 45678888888887754
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.8e-08 Score=90.25 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
++.++.+||.+|.++.+..+...+.++|+|+.|+++.|.+...+...-....+|++|-+.+..+.-..... .+..++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s--~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS--SLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhh--hhhcchh
Confidence 55667777777777777777788888888888888888877655544355667777777666554322111 3445666
Q ss_pred ccEEeccCcc
Q 047285 283 LVFIDLSSNQ 292 (552)
Q Consensus 283 L~~L~L~~n~ 292 (552)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6777777663
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=5.9e-08 Score=87.05 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCccCEEeCCCCCCCCCCCch---hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----Cc
Q 047285 353 LTSIETLDLSGNSKLGGKIPT---SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LT 425 (552)
Q Consensus 353 l~~L~~L~l~~n~~l~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~ 425 (552)
-|.|+++....|+...|.--. .+..-..|+.+.+..+.+...++..+.......+.+|+.||+.+|.++-. +.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 356666666666522221111 11112233444444444333333333233333455777777777776632 23
Q ss_pred hhhcCCCCCcEEECCCCcccCCCcccc------cCCCCCCEEeCCCCcCCccCccc-------ccCCCCCCeeeCCCccc
Q 047285 426 NQLLQFKSLHTLELGHNSLFGPLPPAL------GELSSLKKLDLSNNMLNGFIPLS-------LGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 426 ~~l~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l 492 (552)
..++.++.|+.|.+.+|-++..-..++ ...|+|+.|...+|.+.+.+... -.++|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 344556667777777776653322221 13466777777777664332221 13456666666666666
Q ss_pred c
Q 047285 493 N 493 (552)
Q Consensus 493 ~ 493 (552)
.
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 3
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=9.4e-08 Score=86.90 Aligned_cols=190 Identities=21% Similarity=0.211 Sum_probs=104.4
Q ss_pred CCCCccEEeccCccccc--cCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCcc
Q 047285 279 GLRNLVFIDLSSNQFQG--QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356 (552)
Q Consensus 279 ~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 356 (552)
.++.++.++|.+|.++. ++...+.++|.|+.|+++.|.+...+.....-..+|+.|-+.+..+...-....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46778888888887763 2444567788888888888888765543323456788888877776654444446677788
Q ss_pred CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc--cCchhhcCCCCC
Q 047285 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG--HLTNQLLQFKSL 434 (552)
Q Consensus 357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L 434 (552)
+.|.++.|. +.. +.++-.. .+. ..+.+.+|..-.|...- ..-.--.-+|++
T Consensus 149 telHmS~N~-~rq--------------~n~Dd~c--~e~----------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 149 TELHMSDNS-LRQ--------------LNLDDNC--IED----------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred hhhhhccch-hhh--------------hcccccc--ccc----------cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 888888774 210 0000000 000 00123333333332110 000011225667
Q ss_pred cEEECCCCcccCC-CcccccCCCCCCEEeCCCCcCCcc-CcccccCCCCCCeeeCCCccccee
Q 047285 435 HTLELGHNSLFGP-LPPALGELSSLKKLDLSNNMLNGF-IPLSLGKLSHLEYLDLSNNKLNAS 495 (552)
Q Consensus 435 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 495 (552)
..+.+..|.+... -...+..+|.+--|+|+.|++..- -.+.+.++++|..|.++++++.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 7777777765421 223344556666666666666421 123455666677777777666543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=5.7e-08 Score=98.45 Aligned_cols=124 Identities=29% Similarity=0.294 Sum_probs=56.4
Q ss_pred CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccc-ccCCCCCCeeeCC
Q 047285 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS-LGKLSHLEYLDLS 488 (552)
Q Consensus 410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 488 (552)
|.+.+.++|.+. ...+++.-++.|+.|+|++|+++.. ..+..++.|++|||++|.+. .+|.. ...+. |+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 444455555444 2223344445555555555555422 24445555555555555554 23321 11222 5555555
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCcccccEEecCCCCC
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~ 541 (552)
+|.++. +- .+.++.+|+.||+++|-+.+-.-- -+..+..|+.|.+.||++
T Consensus 241 nN~l~t-L~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTT-LR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHh-hh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555532 21 244555555555555554432111 112233455555555554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=9.7e-08 Score=76.75 Aligned_cols=139 Identities=23% Similarity=0.262 Sum_probs=89.2
Q ss_pred ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCC
Q 047285 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL 434 (552)
Q Consensus 355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L 434 (552)
.+..++++.|+ + +.+++....+. ....|..+++++|.+....+..-..++.+
T Consensus 28 E~h~ldLssc~-l-m~i~davy~l~--------------------------~~~el~~i~ls~N~fk~fp~kft~kf~t~ 79 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-L-MYIADAVYMLS--------------------------KGYELTKISLSDNGFKKFPKKFTIKFPTA 79 (177)
T ss_pred Hhhhcccccch-h-hHHHHHHHHHh--------------------------CCceEEEEecccchhhhCCHHHhhccchh
Confidence 45667777776 3 24555555544 22357778888888875544444556678
Q ss_pred cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccC
Q 047285 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASG 514 (552)
Q Consensus 435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 514 (552)
+.|++++|+++ .+|..+..++.|+.|+++.|++. ..|.-+..+.++-.|+..+|.. .+++-. +-.-...-..++.+
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid~d-l~~s~~~al~~lgn 155 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEIDVD-LFYSSLPALIKLGN 155 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCcHH-HhccccHHHHHhcC
Confidence 88888888887 67777888888888888888887 4555555577788888888777 445542 21112222334466
Q ss_pred CeeeEEcCCCC
Q 047285 515 NSLILKFNPNW 525 (552)
Q Consensus 515 n~~~~~~~~~~ 525 (552)
+++.+..+...
T Consensus 156 epl~~~~~~kl 166 (177)
T KOG4579|consen 156 EPLGDETKKKL 166 (177)
T ss_pred CcccccCcccc
Confidence 66666655443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=4.1e-08 Score=99.45 Aligned_cols=106 Identities=32% Similarity=0.263 Sum_probs=53.3
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
-++.|+.|||+.|++..+ ..+..+++|++|++++|.+...+-.....+. |+.|.+++|.++... .+.+++
T Consensus 185 ll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-----gie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-----GIENLK 254 (1096)
T ss_pred HHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-----hHHhhh
Confidence 345566666666665542 2445556666666666665544443333333 555555555544321 334555
Q ss_pred CccEEeccCccccccC-chhhhcccCCcEEeccCCCC
Q 047285 282 NLVFIDLSSNQFQGQI-PIGLRNLTSLRHLDLRFNYF 317 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l 317 (552)
+|+.||+++|-+.+.- ...+..+..|+.|++.+|.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555666655444221 11233445555555555544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=2.1e-07 Score=83.58 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=22.4
Q ss_pred ccCCCCCCEEeCCCCcCCCC---ccCcccCCCCCCCEEeCCC
Q 047285 122 LVDLKHLIHLDLSGNDFEGI---QIPKYLGSLENLRYLNLSG 160 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~L~~ 160 (552)
+..+..++.++||+|.|... .+...+.+-.+|+..++++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 44466777777777776541 1223344556666666654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.7e-06 Score=53.83 Aligned_cols=37 Identities=41% Similarity=0.584 Sum_probs=20.9
Q ss_pred CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCC
Q 047285 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN 189 (552)
Q Consensus 152 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~ 189 (552)
+|++|++++|+++ .+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666665 355456666666666666665554
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=2.4e-07 Score=88.21 Aligned_cols=110 Identities=22% Similarity=0.228 Sum_probs=57.3
Q ss_pred CCCCEEeCCCCcCCCC-ccCcccCCCCCCCEEeCCCCc-CCCCCcccc-CCCCCCCEEeccCCC-CCCCccccCCccccC
Q 047285 126 KHLIHLDLSGNDFEGI-QIPKYLGSLENLRYLNLSGAK-FAGMIPLQL-GNLSNLQYLDLSGTF-LSNYDLHVDSLSWLS 201 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~-~~p~~~~~l~~L~~L~L~~~~-~~~~lp~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~ 201 (552)
..|+.|.+.++.-.+. .+-.....+++++.|++.+|. ++...-..+ ..+++|++|++..|. ++..-... ...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~----la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY----LAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH----HHH
Confidence 3678888888753332 223344578888888888875 222211222 357788888877642 33221110 123
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~ 239 (552)
.+++|++|+++++.......+......+..++.+...+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 46666666666664332223333334444444444444
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.94 E-value=2.3e-07 Score=88.43 Aligned_cols=86 Identities=26% Similarity=0.261 Sum_probs=45.7
Q ss_pred CCCCEEeccCCCCCCCccccCCcc-ccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCCCCCC-ccc
Q 047285 175 SNLQYLDLSGTFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCHFPPL-LSA 251 (552)
Q Consensus 175 ~~L~~L~l~~n~l~~~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~~~ 251 (552)
..|+.|.++++.-.. ..++. ...+++++++|++.++...+..........|+.|++|++..|. ++...-. ...
T Consensus 138 g~lk~LSlrG~r~v~----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCC----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 457777777763111 11111 2346777777777777544443445555667777777777643 2222211 223
Q ss_pred CCCCCceeecCCC
Q 047285 252 NFSSLKALHLAIN 264 (552)
Q Consensus 252 ~l~~L~~L~l~~n 264 (552)
.+++|++++++.+
T Consensus 214 gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 214 GCRKLKYLNLSWC 226 (483)
T ss_pred hhhhHHHhhhccC
Confidence 4555555555543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.8e-07 Score=72.37 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=96.3
Q ss_pred CCCEEEccCCcCcccCch---hhcCCCCCcEEECCCCcccCCCccccc-CCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285 409 ALESLDLSICQISGHLTN---QLLQFKSLHTLELGHNSLFGPLPPALG-ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY 484 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 484 (552)
.+..++|+.|++- .+++ .+.....|+..+|++|.+. ..|..|. ..+.++.|++++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4667888888765 2333 3445567788899999998 5555554 5568999999999998 68888999999999
Q ss_pred eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285 485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
|+++.|++. ..|+ .+..+.++..|+..+|..- .+|..+......-..++.++.+.+.-|..++
T Consensus 105 lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccccCccc-cchH-HHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 999999994 4566 4555888888998888765 3443333333344455577777766654443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=7.5e-05 Score=73.34 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=53.4
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCC-CCCCCccccCCcccc
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT-FLSNYDLHVDSLSWL 200 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l 200 (552)
+..++++++|++++|.++ .+|. + -.+|++|.+++|.-...+|..+ .++|++|++++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---------
Confidence 556789999999999888 5673 1 2469999999875544667655 358899999887 444332
Q ss_pred CCCCCCCEEeCCCCcCCC
Q 047285 201 SGLYMLEHLDLSQMNLSK 218 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~ 218 (552)
.+|+.|+++.+....
T Consensus 112 ---~sLe~L~L~~n~~~~ 126 (426)
T PRK15386 112 ---ESVRSLEIKGSATDS 126 (426)
T ss_pred ---cccceEEeCCCCCcc
Confidence 246666666554433
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=7.8e-06 Score=86.98 Aligned_cols=109 Identities=33% Similarity=0.469 Sum_probs=66.0
Q ss_pred CCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCCcCCCC-CccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGAKFAGM-IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 203 (552)
.+|++||+++...-...-|..++ .+|.|++|.+.+-.+... .-.-..++|+|..||+|++.++.+ ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhcc
Confidence 46777777775433223444555 367788887777665422 122345677777888877766654 226677
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCC
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQL 242 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 242 (552)
++|+.|.+.+-.+..... ...+-++++|+.||++....
T Consensus 195 knLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccHHHHhccCCCCCchhh-HHHHhcccCCCeeecccccc
Confidence 777777777766665422 23344566777777666543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.9e-05 Score=51.34 Aligned_cols=38 Identities=42% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG 165 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 165 (552)
++|++|++++|+++ .+|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 578889999999999999999983
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=6.1e-06 Score=87.76 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=62.0
Q ss_pred CCCCEEeccCCCCCCCccccCCcc-ccC-CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285 175 SNLQYLDLSGTFLSNYDLHVDSLS-WLS-GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252 (552)
Q Consensus 175 ~~L~~L~l~~n~l~~~~~~~~~~~-~l~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 252 (552)
.+|++||+++...-. ..++ .++ .+|.|+.|.+++-.+... +......++|+|+.||+++++++.. ..+++
T Consensus 122 ~nL~~LdI~G~~~~s-----~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-----NGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchhh-----ccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 578888887753110 1111 122 477777777777666553 3455566777777777777776654 44556
Q ss_pred CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccc
Q 047285 253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF 293 (552)
Q Consensus 253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 293 (552)
+++|+.|.+.+-.+.... ....++++++|++||+|....
T Consensus 194 LknLq~L~mrnLe~e~~~--~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQ--DLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cccHHHHhccCCCCCchh--hHHHHhcccCCCeeecccccc
Confidence 666666666554444311 001445566666666665543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=5.9e-05 Score=65.31 Aligned_cols=106 Identities=25% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS 511 (552)
Q Consensus 432 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 511 (552)
.+...+||++|.+.. + ..|..++.|.+|.+++|+++..-|..-.-+|+|..|.+.+|++...-.-..+..||+|++|.
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455677777777752 2 34566777888888888877555554445677888888887764321111366778888888
Q ss_pred ccCCeeeEEcC---CCCcCcccccEEecCCC
Q 047285 512 ASGNSLILKFN---PNWVPPFQLETLQLRSC 539 (552)
Q Consensus 512 L~~n~~~~~~~---~~~~~~~~L~~L~l~~n 539 (552)
+-+|++...-- -.+..+++|+.||+++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88887763311 02234567777777653
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00011 Score=63.71 Aligned_cols=86 Identities=24% Similarity=0.247 Sum_probs=49.8
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
.+...+||++|.+.. + +.|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+.++. .+..+..+++
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~----dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG----DLDPLASCPK 114 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh----hcchhccCCc
Confidence 355667777776652 1 34556677777777777777544443344566777777777665532 2222455555
Q ss_pred CCEEeCCCCcCCC
Q 047285 206 LEHLDLSQMNLSK 218 (552)
Q Consensus 206 L~~L~ls~n~~~~ 218 (552)
|++|.+-+|.++.
T Consensus 115 L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 115 LEYLTLLGNPVEH 127 (233)
T ss_pred cceeeecCCchhc
Confidence 5555555554443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.54 E-value=5.2e-05 Score=68.54 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=76.2
Q ss_pred cccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC--cCCCCCccccCCCCCCCEEeccCCCCCCCccc
Q 047285 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA--KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH 193 (552)
Q Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 193 (552)
|.+....-.+..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++.-...+|+|++|++++|++..+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--- 106 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--- 106 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---
Confidence 33444455566677777766655532 23456789999999999 77777776677789999999999987652
Q ss_pred cCCccccCCCCCCCEEeCCCCcCCCCcch-hhhcCCCCCCCEEEcCC
Q 047285 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDW-LLVTNSLPSLKVLKLTK 239 (552)
Q Consensus 194 ~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~~~~~~~L~~L~l~~ 239 (552)
..++.+..+.+|..|++..|..+...+. -..+.-+++|++|+-..
T Consensus 107 -stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 107 -STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred -cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 3344467777788888887766553221 22334456666665433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00022 Score=70.11 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (552)
.+..++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|.....+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 35689999999998874 441 24579999999876555667655 35899999999943335554 46667
Q ss_pred eCCCccc--ceecCHHhhhcC------------------CCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285 486 DLSNNKL--NASLSEIHFVNL------------------TKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC 539 (552)
Q Consensus 486 ~L~~n~l--~~~~~~~~~~~l------------------~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 539 (552)
+++.+.. .+.+|. .+..+ ++|++|++++|... ..|..+- .+|+.|+++.|
T Consensus 118 ~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 7766543 234444 23222 35666777766644 2232222 36777777655
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.0001 Score=76.96 Aligned_cols=65 Identities=29% Similarity=0.178 Sum_probs=32.8
Q ss_pred cccCCcEEeccCCC-CCCCCCccCCC-CCCCCEEEccCcc-ceeecCccccCCCCccCEEeCCCCCCC
Q 047285 303 NLTSLRHLDLRFNY-FNSTTPGWLSK-FNDLEFLSVAWNS-LQGTISSVGLENLTSIETLDLSGNSKL 367 (552)
Q Consensus 303 ~l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~l 367 (552)
.+++|+.++++.+. +++..-..+.. +++|+.|.+.++. +++.........++.|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 34555555555554 33332222222 5566666655554 333322222445666777777776643
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=3.1e-05 Score=70.26 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=55.0
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 202 (552)
..+.+.+.|++.++.+.++ ....+|+.|+.|.|+-|+|+..- .+..|++|++|+|..|.|..+. .+.++.+
T Consensus 16 sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sld----EL~YLkn 86 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLD----ELEYLKN 86 (388)
T ss_pred hHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHH----HHHHHhc
Confidence 3466778888888888765 34457888888888888887432 3677888888888877665542 2333445
Q ss_pred CCCCCEEeCCCC
Q 047285 203 LYMLEHLDLSQM 214 (552)
Q Consensus 203 l~~L~~L~ls~n 214 (552)
+++|+.|.|..|
T Consensus 87 lpsLr~LWL~EN 98 (388)
T KOG2123|consen 87 LPSLRTLWLDEN 98 (388)
T ss_pred CchhhhHhhccC
Confidence 555555555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0029 Score=52.59 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=11.8
Q ss_pred CCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285 325 LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363 (552)
Q Consensus 325 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~ 363 (552)
+..+++|+.+.+..+ +. .++...+.++ +++.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 333444444444332 22 2333334443 444444443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.0039 Score=51.80 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=41.5
Q ss_pred cCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhccc
Q 047285 226 TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT 305 (552)
Q Consensus 226 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 305 (552)
+..+++|+.+.+.. .+.......|..+++|+.+.+..+ +...... .+..+++++.+.+.+ .+.......+..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee---eeecccccccccccc-cccccccccccccc
Confidence 34455666666553 344455555566656666665443 2222222 344555566666644 22212233444556
Q ss_pred CCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338 (552)
Q Consensus 306 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 338 (552)
+|+.+++..+ +.......+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666443 333333444444 555555543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00031 Score=73.30 Aligned_cols=88 Identities=20% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCCCccEEeccCcccccc--CchhhhcccCCcEEeccCC-CCCCCC----CccCCCCCCCCEEEccCcc-ceeecCcccc
Q 047285 279 GLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFN-YFNSTT----PGWLSKFNDLEFLSVAWNS-LQGTISSVGL 350 (552)
Q Consensus 279 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l 350 (552)
.++.|+.+.+.++.-... +-.....+++|+.|+++++ ...... ......+++|+.++++++. +++..-....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677777776643322 2334556778888888763 111111 1223456788888888776 4432222212
Q ss_pred CCCCccCEEeCCCCCC
Q 047285 351 ENLTSIETLDLSGNSK 366 (552)
Q Consensus 351 ~~l~~L~~L~l~~n~~ 366 (552)
..+++|+.|.+.+|..
T Consensus 266 ~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSN 281 (482)
T ss_pred hhCCCcceEccCCCCc
Confidence 2377888888777763
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=6.2e-05 Score=68.34 Aligned_cols=99 Identities=20% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccC-cccccCCCCCCeeeC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFI-PLSLGKLSHLEYLDL 487 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 487 (552)
+.+.|+.-+|.++++ .....++.|+.|.|+-|+|+.. ..+..|++|++|.|..|.+...- -..+.++|+|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 455666666666532 1234566677777777766532 33556666777777766665211 123556666777777
Q ss_pred CCcccceecCH----HhhhcCCCCCEEE
Q 047285 488 SNNKLNASLSE----IHFVNLTKLTWFS 511 (552)
Q Consensus 488 ~~n~l~~~~~~----~~~~~l~~L~~L~ 511 (552)
..|+-.|.-+. ..+..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666555432 1344556666554
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.001 Score=60.38 Aligned_cols=82 Identities=28% Similarity=0.344 Sum_probs=41.2
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCC--cccCCCcccccCCCCCCEEeCCCCcCCccCccc---ccCCCCCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHN--SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS---LGKLSHLE 483 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~ 483 (552)
.|+.+.+.+..++.. ..+-.+++|++|.++.| ++++.++.....+|+|+++++++|++.. +++ +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 455555555444321 12334556666666666 4444444444455666666666666542 222 23345555
Q ss_pred eeeCCCcccce
Q 047285 484 YLDLSNNKLNA 494 (552)
Q Consensus 484 ~L~L~~n~l~~ 494 (552)
.|++.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 66666655443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0029 Score=34.07 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=14.0
Q ss_pred cccEEecCCCCCCCCCCccccc
Q 047285 530 QLETLQLRSCHLGPHFPSWLHS 551 (552)
Q Consensus 530 ~L~~L~l~~n~~~~~iP~~l~~ 551 (552)
+|+.||+++|+++ .||++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 67766543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.0081 Score=32.32 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=9.4
Q ss_pred CCEEeCCCCcCCCCCccccC
Q 047285 153 LRYLNLSGAKFAGMIPLQLG 172 (552)
Q Consensus 153 L~~L~L~~~~~~~~lp~~l~ 172 (552)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.05 E-value=0.065 Score=26.67 Aligned_cols=10 Identities=50% Similarity=0.541 Sum_probs=3.4
Q ss_pred CCEEeccCCC
Q 047285 177 LQYLDLSGTF 186 (552)
Q Consensus 177 L~~L~l~~n~ 186 (552)
|++|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.77 E-value=0.025 Score=49.46 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=43.5
Q ss_pred CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC-CCCccCEEeCCCCCCCCCCCchhHhhcccCceee
Q 047285 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE-NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385 (552)
Q Consensus 307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~ 385 (552)
++.+|.++..+.....+.+.+++.++.|.+.+|.-.+..--..++ -.++|+.|++++|+.++......+..+++|+.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 334444444443333333444444444444444322111111111 3478888888888888877777788887666665
Q ss_pred cc
Q 047285 386 LS 387 (552)
Q Consensus 386 l~ 387 (552)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 55
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.10 E-value=0.0018 Score=66.20 Aligned_cols=188 Identities=31% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCCEEEccCccceeecCc---cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccC
Q 047285 330 DLEFLSVAWNSLQGTISS---VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406 (552)
Q Consensus 330 ~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 406 (552)
.+..+.+.+|.+...... ..+...+.|+.|++++|. +.+.....++..- +..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l--~~~---------------------- 142 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGL--RLP---------------------- 142 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhc--ccc----------------------
Confidence 477888888887643221 235667889999999998 5533333332211 000
Q ss_pred CCCCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcccC----CCccccc----CCCCCCEEeCCCCcCCcc---
Q 047285 407 AYALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSLFG----PLPPALG----ELSSLKKLDLSNNMLNGF--- 471 (552)
Q Consensus 407 ~~~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~--- 471 (552)
-..+++|++..|.++.. +.+.+.....++.++++.|.+.. .++..+. ...++++|++++|.++..
T Consensus 143 ~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 143 QCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred hHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 01344444444544432 23334445555555555555421 1112222 344566666666655421
Q ss_pred -CcccccCCCC-CCeeeCCCcccceecCHH---hhhcC-CCCCEEEccCCeeeEEcC----CCCcCcccccEEecCCCCC
Q 047285 472 -IPLSLGKLSH-LEYLDLSNNKLNASLSEI---HFVNL-TKLTWFSASGNSLILKFN----PNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 472 -~~~~~~~l~~-L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~ 541 (552)
+...+...++ +..+++..|.+.+..... .+... ..+++++++.|.+...-. ..+..+.+++.+.+++|++
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 1112233333 445666666554321110 22233 444566666666654322 2333445566666666654
Q ss_pred C
Q 047285 542 G 542 (552)
Q Consensus 542 ~ 542 (552)
.
T Consensus 303 ~ 303 (478)
T KOG4308|consen 303 T 303 (478)
T ss_pred c
Confidence 4
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=0.041 Score=48.21 Aligned_cols=82 Identities=28% Similarity=0.264 Sum_probs=52.2
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCC-ccccc-CCCCCCEEeCCCCc-CCccCcccccCCCCCCee
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPL-PPALG-ELSSLKKLDLSNNM-LNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 485 (552)
.++.+|-+++.|..+-.+.+..++.++.|.+.+|.-.+.. -+.++ -.++|+.|++++|+ |++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5778888888887777777778888888888887644321 01111 24577777777765 454444455666667666
Q ss_pred eCCCc
Q 047285 486 DLSNN 490 (552)
Q Consensus 486 ~L~~n 490 (552)
.|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.16 E-value=0.0054 Score=62.81 Aligned_cols=92 Identities=27% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCCCCCEEEcCCCCCCCCC----CCcccCCCC-CceeecCCCCCCCCCc-cccccccCC-CCccEEeccCccccccCc--
Q 047285 228 SLPSLKVLKLTKCQLCHFP----PLLSANFSS-LKALHLAINNFDNSLF-QYGSWVFGL-RNLVFIDLSSNQFQGQIP-- 298 (552)
Q Consensus 228 ~~~~L~~L~l~~n~~~~~~----~~~~~~l~~-L~~L~l~~n~~~~~~~-~~~~~~~~l-~~L~~L~L~~n~~~~~~~-- 298 (552)
...++++|++.+|.++... ...+...+. ++.+++..|.+.+... .....+..+ ..+++++++.|.++..-.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3556666777666655211 122333344 5667777777665411 111123333 567888888887765433
Q ss_pred --hhhhcccCCcEEeccCCCCCC
Q 047285 299 --IGLRNLTSLRHLDLRFNYFNS 319 (552)
Q Consensus 299 --~~l~~l~~L~~L~l~~n~l~~ 319 (552)
..+..+++++++.++.|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 334456677777777776653
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.92 E-value=0.013 Score=52.32 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=50.2
Q ss_pred CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (552)
.+...+.||++.|++- ..-..+..++.|..|+++.|++. -.|..++....++.+++..|..+ ..|..+...|.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3345566666666543 12223444455666666666654 55666666666666666666655 456666666666666
Q ss_pred eCCCcccceec
Q 047285 486 DLSNNKLNASL 496 (552)
Q Consensus 486 ~L~~n~l~~~~ 496 (552)
++.+|.++..+
T Consensus 117 e~k~~~~~~~~ 127 (326)
T KOG0473|consen 117 EQKKTEFFRKL 127 (326)
T ss_pred hhccCcchHHH
Confidence 66666654433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.87 E-value=0.77 Score=25.59 Aligned_cols=17 Identities=47% Similarity=0.522 Sum_probs=10.0
Q ss_pred CCCCEEeccCCCCCCCc
Q 047285 175 SNLQYLDLSGTFLSNYD 191 (552)
Q Consensus 175 ~~L~~L~l~~n~l~~~~ 191 (552)
++|++|++++|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.87 E-value=0.77 Score=25.59 Aligned_cols=17 Identities=47% Similarity=0.522 Sum_probs=10.0
Q ss_pred CCCCEEeccCCCCCCCc
Q 047285 175 SNLQYLDLSGTFLSNYD 191 (552)
Q Consensus 175 ~~L~~L~l~~n~l~~~~ 191 (552)
++|++|++++|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666555554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.75 E-value=0.017 Score=51.57 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=61.4
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+..++..+.||++.|.+. .+-..|+-++.|..|+++.|.+. .+|..++.+..++++++..|.....|.. +
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s------~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS------Q 107 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc------c
Confidence 4667788888888888776 45566677778888888888776 6788888888888888887766655543 4
Q ss_pred CCCCCCCEEeCCCCcC
Q 047285 201 SGLYMLEHLDLSQMNL 216 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~ 216 (552)
...+.++++++-.+.+
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 4455555555555543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.68 E-value=0.97 Score=25.17 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=10.1
Q ss_pred CCCCEEEcCCCCCCCCCCCc
Q 047285 230 PSLKVLKLTKCQLCHFPPLL 249 (552)
Q Consensus 230 ~~L~~L~l~~n~~~~~~~~~ 249 (552)
++|++|++++|.+...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555544433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.68 E-value=0.97 Score=25.17 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=10.1
Q ss_pred CCCCEEEcCCCCCCCCCCCc
Q 047285 230 PSLKVLKLTKCQLCHFPPLL 249 (552)
Q Consensus 230 ~~L~~L~l~~n~~~~~~~~~ 249 (552)
++|++|++++|.+...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555544433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.40 E-value=0.36 Score=26.37 Aligned_cols=16 Identities=50% Similarity=0.488 Sum_probs=7.5
Q ss_pred CCCEEEccCCcCcccC
Q 047285 409 ALESLDLSICQISGHL 424 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~ 424 (552)
+|++|++++|.+++..
T Consensus 3 ~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 3 NLETLDLSNNQITDEG 18 (24)
T ss_dssp T-SEEE-TSSBEHHHH
T ss_pred CCCEEEccCCcCCHHH
Confidence 4555556555555433
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.14 E-value=3.3 Score=23.22 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=7.3
Q ss_pred CCCCEEeccCCCCC
Q 047285 175 SNLQYLDLSGTFLS 188 (552)
Q Consensus 175 ~~L~~L~l~~n~l~ 188 (552)
++|++|++++|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.95 E-value=2.8 Score=23.49 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=14.6
Q ss_pred ccccEEecCCCCCCCCCCcc
Q 047285 529 FQLETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 529 ~~L~~L~l~~n~~~~~iP~~ 548 (552)
.+|+.|++++|+++ .+|+.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 35788888888888 78763
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.56 E-value=29 Score=35.16 Aligned_cols=38 Identities=29% Similarity=0.259 Sum_probs=19.0
Q ss_pred CCCCCEEeCCCCcCCc----cCcccccCCCCCCeeeCCCccc
Q 047285 455 LSSLKKLDLSNNMLNG----FIPLSLGKLSHLEYLDLSNNKL 492 (552)
Q Consensus 455 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l 492 (552)
-+.+.+|++++|.... .+|.....-..++.+..+.|..
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3456666666665432 1334444444555555555544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.12 E-value=3.7 Score=41.99 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=7.7
Q ss_pred CCCCEEEccCCcCc
Q 047285 408 YALESLDLSICQIS 421 (552)
Q Consensus 408 ~~L~~L~ls~n~~~ 421 (552)
+.+..+.|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34555556666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.22 E-value=4 Score=41.80 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=7.0
Q ss_pred CccEEeccCcccc
Q 047285 282 NLVFIDLSSNQFQ 294 (552)
Q Consensus 282 ~L~~L~L~~n~~~ 294 (552)
.|++|.+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 4555555555544
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.08 E-value=68 Score=32.61 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCCEEEccCCcCcccCch---hhcCCCCCcEEECCCCcccC----CCcccccCCCCCCEEeCCCCcCC
Q 047285 409 ALESLDLSICQISGHLTN---QLLQFKSLHTLELGHNSLFG----PLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
-+..+.++.|......-. .+..-+.+..|++++|.... .+|..+..-..++..-.+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 366677777766533222 23445678889999887652 23444444445666666666543
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.71 E-value=8.8 Score=21.84 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=7.2
Q ss_pred CCCEEeCCCCcCC
Q 047285 127 HLIHLDLSGNDFE 139 (552)
Q Consensus 127 ~L~~L~Ls~n~~~ 139 (552)
.|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.51 E-value=6.6 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=11.2
Q ss_pred CCccCEEeCCCCCCCCC
Q 047285 353 LTSIETLDLSGNSKLGG 369 (552)
Q Consensus 353 l~~L~~L~l~~n~~l~~ 369 (552)
+++|+.|++++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777765543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.67 E-value=29 Score=43.21 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=26.2
Q ss_pred eCCCCcCCccCcccccCCCCCCeeeCCCcccceecC
Q 047285 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLS 497 (552)
Q Consensus 462 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 497 (552)
||++|+|+..-+..|..+++|+.|+|++|++.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 577888875445567778888888888888765543
No 95
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=31.74 E-value=47 Score=19.10 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=11.6
Q ss_pred CcccchhhHHHHHHHHHHHH
Q 047285 1 MKSTIMSVSVAILFLELFVV 20 (552)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (552)
||.++-....|+++++++--
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~ 20 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSH 20 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHH
Confidence 77787777777777665543
No 96
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=26.30 E-value=33 Score=24.97 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=5.3
Q ss_pred CCCCccc
Q 047285 66 DGDCCKW 72 (552)
Q Consensus 66 ~~~~c~w 72 (552)
+.+||+|
T Consensus 61 ~~~CC~~ 67 (75)
T PF02950_consen 61 NSECCSG 67 (75)
T ss_dssp TTCBSSS
T ss_pred CCCCCCC
Confidence 4678887
Done!