Query 047285
Match_columns 552
No_of_seqs 436 out of 4645
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3E-62 1E-66 535.3 37.6 504 32-551 4-560 (768)
2 4eco_A Uncharacterized protein 100.0 8.3E-52 2.8E-56 442.6 33.6 439 35-519 25-601 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.2E-50 4.1E-55 440.5 35.8 457 33-539 262-861 (876)
4 3rgz_A Protein brassinosteroid 100.0 2.3E-51 8E-56 449.1 28.6 445 82-548 200-723 (768)
5 3t6q_A CD180 antigen; protein- 100.0 5.9E-47 2E-51 405.1 35.9 432 82-547 33-518 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-45 5.3E-50 394.1 35.2 423 82-548 32-539 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.7E-45 3E-49 388.3 36.7 415 112-546 67-564 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-43 9.7E-48 381.6 41.2 453 82-547 25-553 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 9.7E-44 3.3E-48 377.6 33.7 423 82-547 28-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-43 5.3E-48 391.2 31.5 466 70-550 14-547 (844)
11 1ziw_A TOLL-like receptor 3; i 100.0 5E-42 1.7E-46 371.8 38.0 417 108-543 31-518 (680)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-42 9.4E-47 369.0 31.5 419 82-546 56-562 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-42 5.7E-47 366.2 27.6 431 69-546 3-514 (549)
14 4eco_A Uncharacterized protein 100.0 4E-43 1.4E-47 375.4 21.2 388 126-542 81-600 (636)
15 2z63_A TOLL-like receptor 4, v 100.0 4.9E-41 1.7E-45 356.7 30.1 403 126-550 28-515 (570)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-41 5.4E-46 375.2 26.5 440 82-546 48-564 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 1.6E-41 5.4E-46 369.0 23.8 394 126-542 323-840 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 9.1E-41 3.1E-45 350.4 27.6 399 118-546 15-485 (520)
19 3v47_A TOLL-like receptor 5B a 100.0 8.4E-40 2.9E-44 337.3 29.5 367 126-546 30-412 (455)
20 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-41 8.4E-46 329.9 16.2 296 36-369 2-306 (313)
21 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-40 1.8E-44 347.2 27.4 406 117-550 19-494 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 3.5E-39 1.2E-43 332.6 31.5 384 68-522 6-412 (455)
23 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-40 2E-44 344.3 24.9 383 129-548 3-462 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9E-39 3.1E-43 338.1 28.6 398 118-546 46-514 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-37 6.4E-42 333.5 34.6 415 112-543 62-581 (635)
26 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-37 3.9E-42 319.2 28.5 355 116-549 32-394 (457)
27 1o6v_A Internalin A; bacterial 100.0 8.2E-37 2.8E-41 315.3 34.6 356 121-551 63-431 (466)
28 1o6v_A Internalin A; bacterial 100.0 5.9E-37 2E-41 316.4 29.9 347 123-543 43-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 1.8E-37 6.3E-42 317.4 25.8 368 112-550 21-419 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-37 2.4E-41 323.6 25.8 391 124-548 29-491 (562)
31 2id5_A Lingo-1, leucine rich r 100.0 2.4E-35 8.2E-40 305.7 28.3 331 126-524 32-362 (477)
32 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-35 3E-39 312.7 30.7 417 117-550 45-563 (635)
33 2id5_A Lingo-1, leucine rich r 100.0 2.9E-35 9.8E-40 305.1 25.7 325 128-522 13-337 (477)
34 1jl5_A Outer protein YOPM; leu 100.0 5.8E-35 2E-39 298.9 25.8 358 123-550 8-380 (454)
35 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-34 1.6E-38 292.4 31.5 351 82-511 42-405 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.6E-34 5.5E-39 291.4 26.9 313 123-521 42-355 (390)
37 4fmz_A Internalin; leucine ric 100.0 3E-33 1E-37 277.6 30.3 307 122-518 40-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 9.5E-34 3.2E-38 301.2 27.5 311 124-495 49-360 (597)
39 4fmz_A Internalin; leucine ric 100.0 2.1E-32 7E-37 271.6 29.3 307 147-542 40-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 1.4E-32 4.9E-37 277.1 23.4 311 149-543 43-353 (390)
41 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.6E-37 268.8 18.7 253 254-543 50-306 (313)
42 3oja_B Anopheles plasmodium-re 100.0 8.8E-32 3E-36 286.1 26.3 312 150-521 50-361 (597)
43 4fcg_A Uncharacterized protein 100.0 6.3E-33 2.1E-37 272.0 13.9 275 35-340 22-312 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-35 1.4E-39 302.7 -5.0 386 126-546 3-444 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-30 1.3E-34 253.5 25.2 288 127-491 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.4E-29 8.2E-34 247.5 30.4 290 127-516 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 2.1E-29 7.3E-34 247.9 28.5 225 277-540 96-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-29 6.4E-34 248.4 26.9 289 152-516 34-331 (332)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-33 5.4E-38 290.9 -3.4 389 83-521 4-443 (461)
50 3ogk_B Coronatine-insensitive 100.0 5.8E-33 2E-37 296.0 -10.2 386 124-519 110-527 (592)
51 2z66_A Variable lymphocyte rec 100.0 6.9E-28 2.4E-32 234.5 18.6 263 230-527 28-296 (306)
52 2z66_A Variable lymphocyte rec 100.0 5.9E-28 2E-32 234.9 17.0 281 233-551 10-296 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 5.6E-28 1.9E-32 240.0 16.4 205 122-365 27-233 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 5.2E-28 1.8E-32 240.2 16.2 280 173-497 29-318 (353)
55 4fcg_A Uncharacterized protein 100.0 8.9E-28 3E-32 235.4 16.5 235 280-542 80-314 (328)
56 3zyi_A Leucine-rich repeat-con 100.0 1.3E-26 4.5E-31 238.0 25.3 228 126-368 75-303 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-27 8.1E-32 228.1 18.1 250 255-540 33-285 (285)
58 3ogk_B Coronatine-insensitive 99.9 2.3E-30 7.9E-35 275.9 -4.7 394 112-515 122-548 (592)
59 3zyi_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 234.9 24.3 252 205-496 55-306 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 5.4E-26 1.8E-30 232.6 25.1 252 205-496 44-295 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.6E-31 223.6 18.1 255 257-550 14-269 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 1.6E-25 5.5E-30 229.0 24.2 248 176-469 44-292 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.1E-29 229.2 28.8 263 126-498 40-302 (622)
64 2p1m_B Transport inhibitor res 99.9 5.3E-30 1.8E-34 273.2 -13.0 133 408-541 372-518 (594)
65 1wwl_A Monocyte differentiatio 99.9 1.8E-27 6E-32 231.9 5.5 248 251-543 40-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3E-24 1E-28 226.1 29.2 266 151-526 40-305 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-26 9.4E-31 224.0 10.8 254 235-537 15-270 (317)
68 1wwl_A Monocyte differentiatio 99.9 3.7E-27 1.3E-31 229.7 3.9 277 58-369 20-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-27 7.7E-32 231.8 2.1 267 205-522 11-280 (317)
70 2o6q_A Variable lymphocyte rec 99.9 4.8E-24 1.7E-28 203.1 22.5 218 67-343 2-219 (270)
71 3oja_A Leucine-rich immune mol 99.9 4.5E-25 1.5E-29 227.8 15.4 135 409-548 121-257 (487)
72 2p1m_B Transport inhibitor res 99.9 3.7E-28 1.3E-32 259.0 -10.0 408 122-539 101-541 (594)
73 3oja_A Leucine-rich immune mol 99.9 3.5E-25 1.2E-29 228.6 12.4 240 121-387 29-270 (487)
74 3rfs_A Internalin B, repeat mo 99.9 7.3E-25 2.5E-29 209.0 12.0 206 302-550 38-243 (272)
75 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.3E-28 199.9 18.3 209 281-522 28-241 (276)
76 2z62_A TOLL-like receptor 4, v 99.9 2E-22 6.7E-27 192.7 21.9 208 127-372 29-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 4.8E-22 1.6E-26 189.3 24.1 204 127-370 17-220 (270)
78 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.2E-28 199.8 12.5 211 277-530 37-247 (272)
79 2ast_B S-phase kinase-associat 99.9 3.2E-24 1.1E-28 211.6 6.8 253 231-550 48-314 (336)
80 1p9a_G Platelet glycoprotein I 99.9 5.6E-22 1.9E-26 190.5 21.7 202 121-365 5-206 (290)
81 1p9a_G Platelet glycoprotein I 99.9 5E-22 1.7E-26 190.8 19.3 204 250-494 6-209 (290)
82 3goz_A Leucine-rich repeat-con 99.9 6.7E-24 2.3E-28 211.2 3.1 261 234-520 2-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 2.1E-23 7.1E-28 207.6 6.1 259 209-498 3-302 (362)
84 2ca6_A RAN GTPase-activating p 99.9 7.1E-24 2.4E-28 213.1 2.7 249 277-545 28-319 (386)
85 2ast_B S-phase kinase-associat 99.9 3.4E-23 1.2E-27 204.1 6.1 151 204-364 47-205 (336)
86 4glp_A Monocyte differentiatio 99.9 3.9E-22 1.3E-26 194.0 12.2 226 281-543 64-308 (310)
87 3m19_A Variable lymphocyte rec 99.9 5.4E-21 1.8E-25 179.9 19.3 191 68-295 3-193 (251)
88 1h6u_A Internalin H; cell adhe 99.9 4.3E-21 1.5E-25 186.1 18.9 194 122-342 37-230 (308)
89 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.7E-26 189.6 14.9 191 280-518 40-230 (308)
90 2ca6_A RAN GTPase-activating p 99.9 2.7E-23 9.2E-28 208.9 2.7 245 222-520 24-318 (386)
91 4glp_A Monocyte differentiatio 99.9 1.8E-21 6.1E-26 189.3 14.6 207 229-494 90-308 (310)
92 2xwt_C Thyrotropin receptor; s 99.9 3.8E-21 1.3E-25 179.5 15.0 196 126-338 31-235 (239)
93 3m19_A Variable lymphocyte rec 99.9 9.4E-21 3.2E-25 178.2 16.9 181 305-520 14-194 (251)
94 2o6s_A Variable lymphocyte rec 99.8 5.4E-20 1.9E-24 167.8 17.1 163 125-305 27-189 (208)
95 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.2E-25 176.1 12.3 196 282-515 32-236 (239)
96 2o6s_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 166.4 13.5 193 308-546 10-202 (208)
97 3cvr_A Invasion plasmid antige 99.8 1.3E-19 4.3E-24 188.6 14.6 212 60-327 34-252 (571)
98 3cvr_A Invasion plasmid antige 99.8 3.3E-19 1.1E-23 185.5 14.3 186 282-527 60-252 (571)
99 3e6j_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 159.0 18.2 164 61-269 11-174 (229)
100 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.3E-23 170.5 17.7 132 231-365 31-165 (350)
101 4ay9_X Follicle-stimulating ho 99.8 9.8E-19 3.4E-23 172.9 12.0 241 257-540 12-257 (350)
102 1h6t_A Internalin B; cell adhe 99.8 7.1E-18 2.4E-22 161.9 16.0 173 122-343 42-214 (291)
103 1h6t_A Internalin B; cell adhe 99.8 3.4E-18 1.2E-22 164.2 13.4 171 278-493 43-213 (291)
104 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.4E-22 174.8 16.7 175 122-321 39-213 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.4E-22 151.2 15.9 156 309-497 15-170 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.8E-22 151.8 14.9 156 332-522 14-170 (220)
107 1m9s_A Internalin B; cell inva 99.7 9.6E-18 3.3E-22 176.4 14.3 191 254-494 21-211 (605)
108 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 8E-22 151.4 14.4 155 308-496 14-168 (220)
109 2xot_A Amphoterin-induced prot 99.7 4.2E-17 1.5E-21 161.8 15.3 178 284-495 21-204 (361)
110 3e6j_A Variable lymphocyte rec 99.7 9.8E-17 3.4E-21 148.2 16.0 137 408-546 40-176 (229)
111 4b8c_D Glucose-repressible alc 99.7 1E-18 3.5E-23 188.6 2.8 54 37-92 129-183 (727)
112 2xot_A Amphoterin-induced prot 99.7 3.3E-17 1.1E-21 162.6 13.5 176 257-469 21-202 (361)
113 2v9t_B SLIT homolog 2 protein 99.7 1.2E-16 4.1E-21 146.6 15.5 152 284-469 14-165 (220)
114 4ezg_A Putative uncharacterize 99.7 4.7E-17 1.6E-21 146.8 11.9 106 409-518 89-194 (197)
115 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 147.6 10.4 130 408-543 66-195 (197)
116 1dce_A Protein (RAB geranylger 99.7 6.4E-19 2.2E-23 184.3 -3.4 107 409-521 442-549 (567)
117 1dce_A Protein (RAB geranylger 99.7 4.4E-20 1.5E-24 193.1 -12.3 204 123-360 346-566 (567)
118 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.4E-21 150.1 10.8 170 124-343 17-186 (263)
119 1xeu_A Internalin C; cellular 99.7 5.8E-16 2E-20 146.2 13.9 152 121-296 36-187 (263)
120 1w8a_A SLIT protein; signaling 99.7 9.3E-16 3.2E-20 137.5 13.8 132 411-546 11-143 (192)
121 4b8c_D Glucose-repressible alc 99.6 3.3E-17 1.1E-21 176.7 3.2 180 321-542 216-404 (727)
122 2ell_A Acidic leucine-rich nuc 99.6 1.9E-16 6.4E-21 138.9 6.3 139 407-548 23-165 (168)
123 3sb4_A Hypothetical leucine ri 99.6 1.5E-16 5.2E-21 155.8 6.0 223 280-536 100-328 (329)
124 1w8a_A SLIT protein; signaling 99.6 8E-16 2.8E-20 137.9 9.0 128 409-541 55-182 (192)
125 2je0_A Acidic leucine-rich nuc 99.6 8.6E-16 2.9E-20 131.7 6.2 128 408-538 17-149 (149)
126 2je0_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 128.5 9.3 104 409-514 43-149 (149)
127 3sb4_A Hypothetical leucine ri 99.6 2.1E-15 7E-20 147.7 9.6 287 174-512 24-328 (329)
128 2ell_A Acidic leucine-rich nuc 99.6 9.7E-15 3.3E-19 127.9 12.1 132 305-469 24-160 (168)
129 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 127.5 13.0 133 410-546 9-141 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 2.3E-14 8E-19 128.3 13.0 112 408-521 31-142 (193)
131 2wfh_A SLIT homolog 2 protein 99.5 5E-14 1.7E-18 126.1 13.2 108 432-541 31-138 (193)
132 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 121.2 13.5 87 409-495 53-139 (177)
133 4fdw_A Leucine rich hypothetic 99.5 1.2E-12 4E-17 130.9 19.8 217 282-539 158-380 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 8.3E-14 2.8E-18 122.9 7.5 131 406-542 17-153 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.5E-18 122.3 8.0 115 121-245 14-128 (176)
136 4fdw_A Leucine rich hypothetic 99.4 5.9E-12 2E-16 125.8 20.3 249 200-491 132-381 (401)
137 4fs7_A Uncharacterized protein 99.4 1.1E-11 3.8E-16 124.2 21.7 329 120-534 65-393 (394)
138 1ds9_A Outer arm dynein; leuci 99.4 9E-16 3.1E-20 138.4 -7.5 127 409-542 49-185 (198)
139 1ds9_A Outer arm dynein; leuci 99.4 3.7E-15 1.3E-19 134.3 -5.2 62 300-365 43-104 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 114.8 10.1 109 409-521 10-118 (170)
141 4fs7_A Uncharacterized protein 99.4 2.9E-11 1E-15 121.2 20.5 128 404-539 249-376 (394)
142 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 112.0 11.3 109 434-546 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.6E-17 112.6 10.2 107 410-520 14-120 (174)
144 2r9u_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 110.3 11.6 107 434-544 14-120 (174)
145 3un9_A NLR family member X1; l 99.2 2.5E-13 8.7E-18 134.4 -3.9 86 409-494 156-253 (372)
146 3un9_A NLR family member X1; l 99.2 9.7E-13 3.3E-17 130.2 -0.7 186 328-543 71-284 (372)
147 4gt6_A Cell surface protein; l 99.1 3.1E-09 1.1E-13 106.4 21.5 320 200-541 59-390 (394)
148 2ifg_A High affinity nerve gro 99.1 1.3E-10 4.5E-15 114.4 9.2 86 407-493 30-116 (347)
149 4gt6_A Cell surface protein; l 99.1 1.1E-08 3.9E-13 102.2 23.4 105 406-517 286-390 (394)
150 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 111.5 10.6 108 411-522 11-120 (347)
151 2ra8_A Uncharacterized protein 98.9 4.9E-10 1.7E-14 109.8 5.3 83 431-516 251-341 (362)
152 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.5E-14 106.1 3.2 83 407-491 251-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 9.1E-07 3.1E-11 87.9 23.0 108 404-515 236-343 (379)
154 4h09_A Hypothetical leucine ri 98.7 3E-06 1E-10 84.1 24.2 315 122-505 42-356 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 3.4E-08 1.2E-12 87.2 3.1 112 406-518 34-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 1.9E-08 6.4E-13 88.9 -0.1 118 424-542 28-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.2E-12 86.4 4.0 81 429-511 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.4E-07 8.4E-12 85.9 1.7 79 406-486 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 3.8E-07 1.3E-11 78.4 0.9 83 409-491 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 4.1E-07 1.4E-11 78.2 1.0 85 431-516 60-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.1E-09 64.1 4.3 110 407-517 40-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00014 4.8E-09 63.6 -0.3 115 426-541 35-169 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.005 1.7E-07 50.1 5.5 58 435-494 11-69 (130)
164 3rfe_A Platelet glycoprotein I 95.9 0.015 5E-07 47.3 6.5 57 411-469 11-68 (130)
165 1z65_A PRPLP, prion-like prote 40.8 20 0.0007 19.6 2.1 21 1-21 1-21 (30)
166 2lz0_A Uncharacterized protein 31.5 92 0.0031 23.1 5.5 42 423-465 11-52 (100)
167 2lz0_A Uncharacterized protein 26.3 91 0.0031 23.2 4.6 45 444-489 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-62 Score=535.30 Aligned_cols=504 Identities=26% Similarity=0.312 Sum_probs=389.6
Q ss_pred CCCCCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCC-----CCchhhccc
Q 047285 32 NSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG-----GDLREVKAG 106 (552)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~-----~~l~~l~~~ 106 (552)
+++.++.++|++||++||+++.||. .+++|+. +.+||.|.||+|+ .|+|+.|++++...... ..+..+..
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~- 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG- 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT-
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc-
Confidence 3444557899999999999999888 8999985 6799999999998 79999999998654321 11111111
Q ss_pred CccccCccccc--cCccccCCCCCCEEeCCCCcCCCCccCc--ccCCCCCCCEEeCCCCcCCCCCcccc-CCCCCCCEEe
Q 047285 107 SNYERSKLGGK--VNPSLVDLKHLIHLDLSGNDFEGIQIPK--YLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLD 181 (552)
Q Consensus 107 ~~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~~~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~ 181 (552)
....++...+. +|+.++++++|++|+|++|.+.+ .+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 11111222222 23566667777777777776665 3555 66666677777777666666666554 5666666666
Q ss_pred ccCCCCCCCcccc----C----------------CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285 182 LSGTFLSNYDLHV----D----------------SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 182 l~~n~l~~~~~~~----~----------------~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (552)
+++|.++...... . ....+..+++|++|++++|.+.+. ++. +.++++|++|++++|.
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCc
Confidence 6666554321100 0 001135677788888888877662 333 6778888888888888
Q ss_pred CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcc-cCCcEEeccCCCCCCC
Q 047285 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL-TSLRHLDLRFNYFNST 320 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~ 320 (552)
+.+..|..+.++++|++|++++|.+.+.++. . .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP---L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCC---C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCc---c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 8877777788888888888888888776665 2 67888888888888888888877664 8899999999999888
Q ss_pred CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcc-cCceeecccccCCCCCcc--
Q 047285 321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLC-KLTSVDLSLIDLSQDFSQ-- 397 (552)
Q Consensus 321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~-- 397 (552)
+|..+.++++|++|++++|.++|.+|...+..+++|++|++++|. +++.+|..+..++ +|+.++++.+.......+
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 888899999999999999999888887768889999999999998 8888899888887 888888876543211000
Q ss_pred -------------------ccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCC
Q 047285 398 -------------------VLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458 (552)
Q Consensus 398 -------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 458 (552)
...+..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 0122346678899999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCC
Q 047285 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS 538 (552)
Q Consensus 459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 538 (552)
++|++++|.+++.+|..+.++++|++|++++|++++.+|. .+..+++|++|++++|++.+.+|..+..+++|+.|++++
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 9999999999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccc
Q 047285 539 CHLGPHFPSWLHS 551 (552)
Q Consensus 539 n~~~~~iP~~l~~ 551 (552)
|+++|.+|.++.+
T Consensus 548 N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 548 NLFNGTIPAAMFK 560 (768)
T ss_dssp SEEESBCCGGGGT
T ss_pred CccCCcCChHHhc
Confidence 9999999988754
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.3e-52 Score=442.62 Aligned_cols=439 Identities=19% Similarity=0.241 Sum_probs=273.5
Q ss_pred CCCcHHHHHHHHHhHhcCCCCC-C-------CCCCCCCCCCCCccc---CceEecCCCCcEEEEEcCCCCccCCCCchhh
Q 047285 35 VGCIDSEREALLKLKQDLIDPS-N-------RLASWNTGDGDCCKW---AGVFCSNITGHVLQLSLQNPFSYLGGDLREV 103 (552)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~-~-------~~~~W~~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l 103 (552)
.+...+|++||.++++++.++. . ...+|+. +.+||.| .||+|+. .|||++|+|++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~------------ 90 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEG------------ 90 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTT------------
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecC------------
Confidence 3445679999999999986442 1 2348987 6899999 9999975 49999999998
Q ss_pred cccCccccCccccccCccccCCCCCCEEeCCCCcC------CC-------------------------------------
Q 047285 104 KAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDF------EG------------------------------------- 140 (552)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~------~~------------------------------------- 140 (552)
+++.|.+|++++++++|++|+|++|.+ .+
T Consensus 91 --------~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 91 --------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp --------SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred --------cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 488999999999999999999999954 10
Q ss_pred ---------------------------------CccCcccCCCCCCCEEeCCCCcCCCC-----------------Cccc
Q 047285 141 ---------------------------------IQIPKYLGSLENLRYLNLSGAKFAGM-----------------IPLQ 170 (552)
Q Consensus 141 ---------------------------------~~~p~~~~~l~~L~~L~L~~~~~~~~-----------------lp~~ 170 (552)
..+|+.++++++|++|+|++|++++. +|..
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 01566677777777777777777764 7777
Q ss_pred cC--CCCCCCEEeccCCCCCC-CccccCCccccCCCCCCCEEeCCCCc-CCCCcchhhhcCCC------CCCCEEEcCCC
Q 047285 171 LG--NLSNLQYLDLSGTFLSN-YDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSL------PSLKVLKLTKC 240 (552)
Q Consensus 171 l~--~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~l~~L~~L~ls~n~-~~~~~~~~~~~~~~------~~L~~L~l~~n 240 (552)
++ ++++|++|++++|.+.. +| +.+.++++|++|++++|. +++. .+|..+..+ ++|++|++++|
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLP------TFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCC------TTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred hhhcccCCCCEEEecCCcCCccCh------HHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCC
Confidence 77 77777777777775432 22 136677777777777776 5530 134434333 77777777777
Q ss_pred CCCCCCCC--cccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC-CcEEeccCCCC
Q 047285 241 QLCHFPPL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS-LRHLDLRFNYF 317 (552)
Q Consensus 241 ~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l 317 (552)
.++ .+|. .+.++++|+.|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 777 4555 67777777777777777776655 3455677777777777776 66666777777 77777777777
Q ss_pred CCCCCccCCCCC--CCCEEEccCccceeecCccccC-------CCCccCEEeCCCCCCCCCCCchh-HhhcccCceeecc
Q 047285 318 NSTTPGWLSKFN--DLEFLSVAWNSLQGTISSVGLE-------NLTSIETLDLSGNSKLGGKIPTS-FARLCKLTSVDLS 387 (552)
Q Consensus 318 ~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~l~-------~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~l~l~ 387 (552)
+ .+|..+...+ +|++|++++|.+++.+|.. +. .+++|+.|++++|. ++ .+|.. +..+++|+.++++
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~-l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ-IS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC-CC-SCCTHHHHTTCCCSEEECC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc-cC-cCCHHHHccCCCCCEEECC
Confidence 6 5566555543 6777777777777666554 55 56677777777776 55 34433 3446655555544
Q ss_pred cccCCCCCccccccc---cccCCCCCCEEEccCCcCcccCchhhc--CCCCCcEEECCCCcccCCCcccccCCCCCCEEe
Q 047285 388 LIDLSQDFSQVLDTF---SSCGAYALESLDLSICQISGHLTNQLL--QFKSLHTLELGHNSLFGPLPPALGELSSLKKLD 462 (552)
Q Consensus 388 ~~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 462 (552)
.+.... ........ ...++++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|+
T Consensus 466 ~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 466 GNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp SSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 433321 00000000 0111224555555555555 3444443 45555555555555553 455555555555555
Q ss_pred C------CCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285 463 L------SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL 519 (552)
Q Consensus 463 L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 519 (552)
+ ++|.+.+.+|..+..+++|++|++++|++ +.+|. .+. ++|++|++++|++..
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~-~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE-KIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--TTCCEEECCSCTTCE
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH-hHh--CcCCEEECcCCCCcc
Confidence 5 23444445555555555555555555555 44444 222 455555555555443
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-50 Score=440.49 Aligned_cols=457 Identities=18% Similarity=0.205 Sum_probs=301.4
Q ss_pred CCCCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCC----CCC--ccc------------CceEecCCCCcEEEEEcCCCCc
Q 047285 33 SYVGCIDSEREALLKLKQDLIDPSNRLASWNTGD----GDC--CKW------------AGVFCSNITGHVLQLSLQNPFS 94 (552)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~----~~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~ 94 (552)
.+.++..+|++||++||+++.+| +|+..+ .+| |.| .||+|+. .+||+.|+|++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--- 332 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--- 332 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence 44556788999999999999765 675432 345 999 9999986 79999999998
Q ss_pred cCCCCchhhcccCccccCccccccCccccCCCCCCEEeC-CCCcCCCC--------------------------------
Q 047285 95 YLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL-SGNDFEGI-------------------------------- 141 (552)
Q Consensus 95 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~~~~~-------------------------------- 141 (552)
+++.|.+|++++++++|++|+| ++|.+.|.
T Consensus 333 -----------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 333 -----------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp -----------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred -----------------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 4899999999999999999999 77754321
Q ss_pred -------------------------------------------ccCcccCCCCCCCEEeCCCCcCCC-------------
Q 047285 142 -------------------------------------------QIPKYLGSLENLRYLNLSGAKFAG------------- 165 (552)
Q Consensus 142 -------------------------------------------~~p~~~~~l~~L~~L~L~~~~~~~------------- 165 (552)
.+|..++++++|++|+|++|++++
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 066777788888888888888876
Q ss_pred ----CCccccC--CCCCCCEEeccCCCCC-CCccccCCccccCCCCCCCEEeCCCCc-CCCCcchhh-------hcCCCC
Q 047285 166 ----MIPLQLG--NLSNLQYLDLSGTFLS-NYDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLL-------VTNSLP 230 (552)
Q Consensus 166 ----~lp~~l~--~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~l~~L~~L~ls~n~-~~~~~~~~~-------~~~~~~ 230 (552)
.+|..++ ++++|++|++++|.+. .+| +.+.++++|++|++++|. +++. .+|. .+..++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP------~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~ 548 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLP------DFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGP 548 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC------GGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTT
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccCh------HHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccC
Confidence 3777777 8888888888877643 223 236778888888888886 6540 1222 234556
Q ss_pred CCCEEEcCCCCCCCCCCC--cccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC-C
Q 047285 231 SLKVLKLTKCQLCHFPPL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS-L 307 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L 307 (552)
+|++|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++ |
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 8888888888887 5555 7778888888888888777 444 4667788888888888877 67777777877 8
Q ss_pred cEEeccCCCCCCCCCccCCCCCC--CCEEEccCccceeecCccc--cC--CCCccCEEeCCCCCCCCCCCchhH-hhccc
Q 047285 308 RHLDLRFNYFNSTTPGWLSKFND--LEFLSVAWNSLQGTISSVG--LE--NLTSIETLDLSGNSKLGGKIPTSF-ARLCK 380 (552)
Q Consensus 308 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~--l~--~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~ 380 (552)
++|++++|.++ .+|..+...+. |+.|++++|.+.+.+|... +. .+++|+.|++++|. ++ .+|..+ ..+++
T Consensus 622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~-~lp~~~~~~l~~ 698 (876)
T 4ecn_A 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQ-KFPTELFATGSP 698 (876)
T ss_dssp CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CC-SCCHHHHHTTCC
T ss_pred CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CC-ccCHHHHccCCC
Confidence 88888888877 56666665543 8888888888876554321 12 33478888888887 66 455544 35666
Q ss_pred CceeecccccCCCCCccccccc---cccCCCCCCEEEccCCcCcccCchhhc--CCCCCcEEECCCCcccCCCcccccCC
Q 047285 381 LTSVDLSLIDLSQDFSQVLDTF---SSCGAYALESLDLSICQISGHLTNQLL--QFKSLHTLELGHNSLFGPLPPALGEL 455 (552)
Q Consensus 381 L~~l~l~~~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l 455 (552)
|+.++++.+.... ........ ...++++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 699 L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 699 ISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp CSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 6666555443331 00000000 0112235666666666666 4555554 56666666666666664 55566666
Q ss_pred CCCCEEeCCC------CcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcc
Q 047285 456 SSLKKLDLSN------NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529 (552)
Q Consensus 456 ~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 529 (552)
++|+.|++++ |.+.+.+|..+.++++|+.|+|++|++ +.+|. .+. ++|+.|+|++|++...-+..+....
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~-~l~--~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE-KLT--PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH-hhc--CCCCEEECCCCCCCccChHHccccc
Confidence 6666666654 555555666666666666666666666 55555 222 4666666666665544444443333
Q ss_pred cccEEecCCC
Q 047285 530 QLETLQLRSC 539 (552)
Q Consensus 530 ~L~~L~l~~n 539 (552)
.+..+.+.+|
T Consensus 852 ~~~~~~L~~n 861 (876)
T 4ecn_A 852 EAGMYVLLYD 861 (876)
T ss_dssp HTTCCEEECC
T ss_pred cchheeecCC
Confidence 3333444433
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-51 Score=449.13 Aligned_cols=445 Identities=30% Similarity=0.390 Sum_probs=363.4
Q ss_pred CcEEEEEcCCCCccCC----CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEe
Q 047285 82 GHVLQLSLQNPFSYLG----GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLN 157 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~ 157 (552)
.+++.|++++...... +.++.++.+ +...+.+.+.+|..+.++++|++|++++|.+.+ .+|.. .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHL-DISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEE-ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEE-ECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEE
Confidence 4677888877543221 111222211 233456666666677777777777777777665 24443 667777777
Q ss_pred CCCCcCCCCCccccCCC-CCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhh-cCCCCCCCEE
Q 047285 158 LSGAKFAGMIPLQLGNL-SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLV-TNSLPSLKVL 235 (552)
Q Consensus 158 L~~~~~~~~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~-~~~~~~L~~L 235 (552)
+++|++++.+|..+.+. ++|++|++++|.++... .+.+..+++|++|++++|.+.+ .++.. +..+++|++|
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-----PPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVL 348 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-----CGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-----chHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEE
Confidence 77777777777777664 77777777777654211 1237788888999999888874 34443 7788899999
Q ss_pred EcCCCCCCCCCCCcccCCC-CCceeecCCCCCCCCCccccccccC--CCCccEEeccCccccccCchhhhcccCCcEEec
Q 047285 236 KLTKCQLCHFPPLLSANFS-SLKALHLAINNFDNSLFQYGSWVFG--LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDL 312 (552)
Q Consensus 236 ~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 312 (552)
++++|.+.+..|..+.+++ +|+.|++++|.+.+.++. .+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 9999988888888888887 899999999988887776 5554 788999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCC
Q 047285 313 RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS 392 (552)
Q Consensus 313 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~ 392 (552)
++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|. +++.+|..+..+++|+.++++.+...
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999999999999999999999999999999888887 8899999999999998 89999999999999999888876655
Q ss_pred CCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccc--------------------
Q 047285 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL-------------------- 452 (552)
Q Consensus 393 ~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-------------------- 452 (552)
.... ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+
T Consensus 504 ~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 504 GEIP-----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CcCC-----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 3222 234567899999999999999999999999999999999999988777644
Q ss_pred --------------------------------------------------cCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 047285 453 --------------------------------------------------GELSSLKKLDLSNNMLNGFIPLSLGKLSHL 482 (552)
Q Consensus 453 --------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 482 (552)
..+++|+.|++++|+++|.+|..++++++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 335789999999999999999999999999
Q ss_pred CeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285 483 EYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 483 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~ 548 (552)
+.|+|++|+++|.+|. .++++++|++|+|++|+++|.+|..+..+.+|+.||+++|+++|.||+.
T Consensus 659 ~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 659 FILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999 8999999999999999999999999999999999999999999999964
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.9e-47 Score=405.12 Aligned_cols=432 Identities=20% Similarity=0.150 Sum_probs=200.8
Q ss_pred CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285 82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA 161 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~ 161 (552)
..++.|++++. .+++..|..|.++++|++|++++|.+.+. .|+.|+++++|++|++++|
T Consensus 33 ~~l~~L~Ls~n--------------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 33 NSTECLEFSFN--------------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTCCEEECTTC--------------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred CcCcEEEccCC--------------------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCC
Confidence 46777888774 55555555666666666666666666642 4566666666666666666
Q ss_pred cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (552)
++++..|..++++++|++|++++|.++.++... +..+++|++|++++|.+.+.. .+. +..+++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-----LHNQKTLESLYLGSNHISSIK-LPK-GFPTEKLKVLDFQNNA 164 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-----CTTCTTCCEEECCSSCCCCCC-CCT-TCCCTTCCEEECCSSC
T ss_pred cccccChhhhcccccccEeeccccCcccCCcch-----hccCCcccEEECCCCcccccC-ccc-ccCCcccCEEEcccCc
Confidence 666555666666666666666666655542211 455566666666666555421 111 1225556666666555
Q ss_pred CCCCCCCcccCCCCCc--eeecCCCCCCCCCcccccc-------------------------------------------
Q 047285 242 LCHFPPLLSANFSSLK--ALHLAINNFDNSLFQYGSW------------------------------------------- 276 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~~~~------------------------------------------- 276 (552)
+.+..+..+..+++|+ .|++++|.+.+..+.....
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 5555555555555555 4555555544433321100
Q ss_pred ---ccCC--CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC
Q 047285 277 ---VFGL--RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351 (552)
Q Consensus 277 ---~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 351 (552)
+..+ .+|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+.. +.
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~ 322 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-AS 322 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hh
Confidence 0000 03444444444444444444444555555555555444 33444444455555555555444322222 44
Q ss_pred CCCccCEEeCCCCCCCCCCCch-hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcC
Q 047285 352 NLTSIETLDLSGNSKLGGKIPT-SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ 430 (552)
Q Consensus 352 ~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~ 430 (552)
.+++|+.|++++|. +.+.++. .+..+++|+.++++........ ..+..+..+++|++|++++|.+++..+..+..
T Consensus 323 ~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 323 NFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSD---CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEE---ESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred ccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCcccccc---CcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 44455555555544 3333322 2444444444444433221100 00111223334444444444444444444444
Q ss_pred CCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee-cCH-HhhhcCCCC
Q 047285 431 FKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS-LSE-IHFVNLTKL 507 (552)
Q Consensus 431 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~~~~l~~L 507 (552)
+++|+.|++++|++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. ++. ..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 44444444444444433222 134444444444444444433344444444444444444444331 110 123344444
Q ss_pred CEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCc
Q 047285 508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS 547 (552)
Q Consensus 508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~ 547 (552)
++|++++|++.+..|..+..+++|+.|++++|++++..|+
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 4444444444444444444444444444444444443333
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-45 Score=394.13 Aligned_cols=423 Identities=19% Similarity=0.166 Sum_probs=253.8
Q ss_pred CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285 82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA 161 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~ 161 (552)
.+++.|++++ +.+.+..+..|.++++|++|++++|.+++. .|..|+++++|++|++++|
T Consensus 32 ~~l~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 32 SSTKNIDLSF--------------------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTCCEEECTT--------------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred CCcCEEECCC--------------------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCC
Confidence 4678888877 466666666778888888888888877753 4667778888888888888
Q ss_pred cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (552)
++++..|..++++++|++|++++|.+..++... +.++++|++|++++|.+.+. .++..+.++++|++|++++|.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFP-----IGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-----CTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccc-----cCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCc
Confidence 887766777888888888888888776655322 67777888888888877653 245667777888888888887
Q ss_pred CCCCCCCcccCCCCCc----eeecCCCCCCCCCcccc-------------------------------------------
Q 047285 242 LCHFPPLLSANFSSLK----ALHLAINNFDNSLFQYG------------------------------------------- 274 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~------------------------------------------- 274 (552)
+.+..+..+..+++|+ .|++++|.+++..+...
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 7777666665555443 45555555443222200
Q ss_pred ----------------------------------ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCC
Q 047285 275 ----------------------------------SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNST 320 (552)
Q Consensus 275 ----------------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 320 (552)
..+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SS
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cc
Confidence 01223445555555555553 233 455566677777777776 45
Q ss_pred CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC--CchhHhhcccCceeecccccCCCCCccc
Q 047285 321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK--IPTSFARLCKLTSVDLSLIDLSQDFSQV 398 (552)
Q Consensus 321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 398 (552)
+|. + .+++|++|++++|...+.+ .+..+++|+.|++++|. +++. ++..+..+++|+.++++.+......
T Consensus 322 lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--- 392 (606)
T 3vq2_A 322 FPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--- 392 (606)
T ss_dssp CCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEEC---
T ss_pred ccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccch---
Confidence 553 3 6667777777766544333 25567777777777776 5544 3677777777777777654422200
Q ss_pred cccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc-cCcccc
Q 047285 399 LDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG-FIPLSL 476 (552)
Q Consensus 399 ~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~ 476 (552)
..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++ .+|..+
T Consensus 393 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp ---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 123334455555555555554444 344555555555555555555455555555555555555555544 244445
Q ss_pred cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285 477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~ 548 (552)
..+++|++|++++|++++..|. .+.++++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred ccCCCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 5555555555555555444444 4455555555555555555554555555555555555555555 44443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.7e-45 Score=388.29 Aligned_cols=415 Identities=21% Similarity=0.179 Sum_probs=257.3
Q ss_pred CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCc
Q 047285 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD 191 (552)
Q Consensus 112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~ 191 (552)
+.+.+..|..|.++++|++|++++|.+.+ ..|..|+.+++|++|++++|++++..|..++++++|++|++++|.+..++
T Consensus 67 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 67 CQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence 35666666677777777777777777765 25667777777777777777777555666777777777777777666543
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCC--------------------------------------
Q 047285 192 LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK-------------------------------------- 233 (552)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~-------------------------------------- 233 (552)
. +.+..+++|++|++++|.+... .+..+..+++|+
T Consensus 146 ~-----~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (606)
T 3t6q_A 146 L-----PKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218 (606)
T ss_dssp C-----CTTCCCTTCCEEECCSSCCCEE--CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred c-----ccccCCcccCEEEcccCccccc--ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHH
Confidence 2 1133456666666666655542 223333444444
Q ss_pred ---------------------------------------EEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccc
Q 047285 234 ---------------------------------------VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYG 274 (552)
Q Consensus 234 ---------------------------------------~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 274 (552)
+|++++|.+.+.++..+..+++|++|++++|.++ .+|.
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-- 295 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-- 295 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS--
T ss_pred hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh--
Confidence 4444445555555555556666666666666655 3333
Q ss_pred ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCc-cCCCCCCCCEEEccCccceeec--CccccC
Q 047285 275 SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPG-WLSKFNDLEFLSVAWNSLQGTI--SSVGLE 351 (552)
Q Consensus 275 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~l~ 351 (552)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +.. +.
T Consensus 296 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~ 373 (606)
T 3t6q_A 296 -GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LR 373 (606)
T ss_dssp -SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TT
T ss_pred -hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cc
Confidence 455566666666666666655555666666666666666666544433 3566666666666666665433 333 56
Q ss_pred CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCC
Q 047285 352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF 431 (552)
Q Consensus 352 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l 431 (552)
.+++|++|++++|. +.+..|..+..+++|+.++++......... ...+..+++|++|++++|.+++..+..+..+
T Consensus 374 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 374 NLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred cCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 66666666666665 555556666666666666665444332111 1123445667777777777766666666677
Q ss_pred CCCcEEECCCCcccC---CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCC
Q 047285 432 KSLHTLELGHNSLFG---PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT 508 (552)
Q Consensus 432 ~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 508 (552)
++|++|++++|++++ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|. .+.+++.|
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L- 526 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE-ALSHLKGI- 526 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG-GGTTCCSC-
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh-HhCccccc-
Confidence 777777777777664 2234566677777777777777766666677777777777777777666665 66677777
Q ss_pred EEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 509 WFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 509 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
+|++++|++++..|..+..+.+|+.|++++|++....+
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 77777777776655556666677777777777765544
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-43 Score=381.63 Aligned_cols=453 Identities=21% Similarity=0.194 Sum_probs=331.9
Q ss_pred CcEEEEEcCCCCccCCC--Cchhhccc--CccccCccccccCccccCCCCCCEEeCCCCcCCCCccCc-ccCCCCCCCEE
Q 047285 82 GHVLQLSLQNPFSYLGG--DLREVKAG--SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPK-YLGSLENLRYL 156 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~--~l~~l~~~--~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~-~~~~l~~L~~L 156 (552)
.+++.|++++..+.... .+..+..+ .+...+.+.+..|..++++++|++|++++|.+++ +|. .|+.+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 57899999886543321 12222221 2334467777777788888888888888888884 454 68888888888
Q ss_pred eCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEE
Q 047285 157 NLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236 (552)
Q Consensus 157 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~ 236 (552)
++++|++++..|..++++++|++|++++|.++..+.. .+..+++|++|++++|.+++..........+++|++|+
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-----TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-----SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCch-----hhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 8888888876667788888888888888877664332 26778889999999888877533222234568889999
Q ss_pred cCCCCCCCCCCCcccCC---------------------------CCCceeecCCCCCCCCCccccccccCCC--CccEEe
Q 047285 237 LTKCQLCHFPPLLSANF---------------------------SSLKALHLAINNFDNSLFQYGSWVFGLR--NLVFID 287 (552)
Q Consensus 237 l~~n~~~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~l~--~L~~L~ 287 (552)
+++|.+.+..+..+..+ ++|+.|++++|.+.+..+. ++..++ +|++|+
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~---~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT---TFLGLKWTNLTMLD 254 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT---TTGGGGGSCCCEEE
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh---HhhccCcCCCCEEE
Confidence 99888888877766554 4456666777777666665 555554 489999
Q ss_pred ccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceee--------cCccccCCCCccCEE
Q 047285 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT--------ISSVGLENLTSIETL 359 (552)
Q Consensus 288 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------~~~~~l~~l~~L~~L 359 (552)
+++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|...+. +....+..+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 999988877778888889999999999988888888888888999998887654432 222247788999999
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCC-----------------------ccccccccccCCCCCCEEEcc
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF-----------------------SQVLDTFSSCGAYALESLDLS 416 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~L~~L~ls 416 (552)
++++|. +.+..+..+..+++|+.++++.+...... .....+..+..+++|++|+++
T Consensus 335 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 335 NMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp ECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 999998 88888888999999998888754322111 111122334556677777777
Q ss_pred CCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC--ccCcccccCCCCCCeeeCCCcccc
Q 047285 417 ICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN--GFIPLSLGKLSHLEYLDLSNNKLN 493 (552)
Q Consensus 417 ~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~ 493 (552)
+|.+++.++ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+.++++|++|++++|+++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 777766544 56667777777777777777666667777777777777777765 567888888999999999999997
Q ss_pred eecCHHhhhcCCCCCEEEccCCeeeEEcC--------CCCcCcccccEEecCCCCCCCCCCc
Q 047285 494 ASLSEIHFVNLTKLTWFSASGNSLILKFN--------PNWVPPFQLETLQLRSCHLGPHFPS 547 (552)
Q Consensus 494 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--------~~~~~~~~L~~L~l~~n~~~~~iP~ 547 (552)
+..+. .+.++++|++|++++|++.+..+ ..+..+.+|+.|++++|+++ .+|.
T Consensus 494 ~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 494 NINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp CCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 65554 78889999999999999875422 23677889999999999998 6775
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-44 Score=377.56 Aligned_cols=423 Identities=22% Similarity=0.207 Sum_probs=323.0
Q ss_pred CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285 82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA 161 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~ 161 (552)
.+++.|++++ +.+++..+..|.++++|++|++++|.+++. .|+.|+++++|++|++++|
T Consensus 28 ~~l~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 28 FSTKNLDLSF--------------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp SSCCEEECCS--------------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred ccccEEEccC--------------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCC
Confidence 4678888877 467766677888899999999999988863 5677888999999999999
Q ss_pred cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (552)
++++..|..++++++|++|++++|.++.++... +..+++|++|++++|.+... .++..+.++++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS-----CTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCcc-----ccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCc
Confidence 888777778888999999999988887765422 77888899999998888763 346667788889999999888
Q ss_pred CCCCCCCcccCCCCC----ceeecCCCCCCCCCcccc-------------------------------------------
Q 047285 242 LCHFPPLLSANFSSL----KALHLAINNFDNSLFQYG------------------------------------------- 274 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~------------------------------------------- 274 (552)
+.+..+..+..+++| +.+++++|.+.+..+...
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 888877777777777 777887777665443310
Q ss_pred -----------------------------------ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCC
Q 047285 275 -----------------------------------SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS 319 (552)
Q Consensus 275 -----------------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 319 (552)
..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence 01223344455555555444 344444444 5555555555544
Q ss_pred CCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCC--chhHhhcccCceeecccccCCCCCcc
Q 047285 320 TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKI--PTSFARLCKLTSVDLSLIDLSQDFSQ 397 (552)
Q Consensus 320 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~ 397 (552)
.+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|. +++.. +..+..+++|+.++++......
T Consensus 318 ~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~---- 387 (570)
T 2z63_A 318 QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT---- 387 (570)
T ss_dssp SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEE----
T ss_pred ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccc----
Confidence 2222 2445556666665555443332 567888999999987 66543 7788889988888887654332
Q ss_pred ccccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC-ccCccc
Q 047285 398 VLDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN-GFIPLS 475 (552)
Q Consensus 398 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~ 475 (552)
... .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|.++ +.+|..
T Consensus 388 -~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 388 -MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp -EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred -ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 111 15567899999999999987766 56889999999999999999889999999999999999999997 578999
Q ss_pred ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCc
Q 047285 476 LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS 547 (552)
Q Consensus 476 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~ 547 (552)
+..+++|++|++++|++++..|. .+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..|.
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999999888787 799999999999999999988888889999999999999999998883
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=391.20 Aligned_cols=466 Identities=21% Similarity=0.191 Sum_probs=281.6
Q ss_pred cccCceEecCCCCcEEEEEcCCCCccCC--CCc---hhhcccCccccCcccccc-CccccCCCCCCEEeCCCCcCCCCcc
Q 047285 70 CKWAGVFCSNITGHVLQLSLQNPFSYLG--GDL---REVKAGSNYERSKLGGKV-NPSLVDLKHLIHLDLSGNDFEGIQI 143 (552)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~l~~~~~~~~--~~l---~~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~ 143 (552)
|.|..|.+ ...+++.|+|++..+... ..+ +.++.+ +...+...+.+ |..|.++++|++|+|++|.+.+. .
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~L-dLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~ 89 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLL-ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-H 89 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEE-EECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-C
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEE-eCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-C
Confidence 56777766 457889999988532211 111 111111 11222233333 34455555555555555555542 4
Q ss_pred CcccCCCCCCCEEeCCCCcCCCCCccc--cCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcc
Q 047285 144 PKYLGSLENLRYLNLSGAKFAGMIPLQ--LGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD 221 (552)
Q Consensus 144 p~~~~~l~~L~~L~L~~~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~ 221 (552)
|+.|+++++|++|+|++|.+++.+|.. ++++++|++|++++|.+...+.. +.+.++++|++|++++|.+.+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~-- 163 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSIDFSSNQIFLV-- 163 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEEEEESSCCCCC--
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEEECCCCcCCee--
Confidence 555555555555555555555444433 55555555555555554433210 1245555555555555555442
Q ss_pred hhhhcCCC--CCCCEEEcCCCCCCCCCCCcccCCCC------CceeecCCCCCCCCCcccccc-----------------
Q 047285 222 WLLVTNSL--PSLKVLKLTKCQLCHFPPLLSANFSS------LKALHLAINNFDNSLFQYGSW----------------- 276 (552)
Q Consensus 222 ~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~----------------- 276 (552)
.+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+.....
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 12222222 45555666666555555554444443 677777777655443321100
Q ss_pred ----------------ccC--CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285 277 ----------------VFG--LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338 (552)
Q Consensus 277 ----------------~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 338 (552)
+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 011 25677777777777766677777778888888888887777777777778888888888
Q ss_pred ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCC-CCcccccccc---------ccCCC
Q 047285 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ-DFSQVLDTFS---------SCGAY 408 (552)
Q Consensus 339 n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~---------~~~~~ 408 (552)
|.+++..+.. +..+++|+.|++++|. +.+..+..|..+++|+.++++.+.... ...+.+.... -....
T Consensus 324 N~l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 324 NLLGELYSSN-FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp CCCSCCCSCS-CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCCccCHHH-hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence 8777544544 7777888888888886 666666677777777777776654432 1110000000 00122
Q ss_pred CCCEEEccCCcCcccC-chhhcCCCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCC-----ccCcccccCCCC
Q 047285 409 ALESLDLSICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLN-----GFIPLSLGKLSH 481 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 481 (552)
+++.|++++|.+++.. +..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..+.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 3455555555554322 22345778888888888888754332 3456788888888888876 334456778888
Q ss_pred CCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285 482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 482 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
|++|+|++|++++..|. .+.++++|++|+|++|++++..+..+. .+|+.|++++|++++.+|+.+.
T Consensus 482 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPG-VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp EECCCCCHHHHTTCCTT-SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred ccEEECCCCcccccChh-HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 99999999988776666 688889999999999988865554444 6888999999999888887654
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-42 Score=371.84 Aligned_cols=417 Identities=23% Similarity=0.212 Sum_probs=301.4
Q ss_pred ccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCC
Q 047285 108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFL 187 (552)
Q Consensus 108 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 187 (552)
+...+.+.+..+..+.++++|++|++++|.+++. .|+.++++++|++|++++|++++..+..++++++|++|++++|.+
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 4455677776667799999999999999999874 688899999999999999999865555799999999999999988
Q ss_pred CCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCccc--CCCCCceeecCCCC
Q 047285 188 SNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSA--NFSSLKALHLAINN 265 (552)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~ 265 (552)
+.++.. .+.++++|++|++++|.+.+. .+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 110 ~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 110 QKIKNN-----PFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCCCSC-----TTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CccChh-----HccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 776533 278899999999999988773 455677899999999999999888776554 45889999999999
Q ss_pred CCCCCccccccccCC---------------------------CCccEEeccCccccccCchhhhcccC--CcEEeccCCC
Q 047285 266 FDNSLFQYGSWVFGL---------------------------RNLVFIDLSSNQFQGQIPIGLRNLTS--LRHLDLRFNY 316 (552)
Q Consensus 266 ~~~~~~~~~~~~~~l---------------------------~~L~~L~L~~n~~~~~~~~~l~~l~~--L~~L~l~~n~ 316 (552)
+.+..+. .+..+ ++|+.|++++|.+.+..|..+..++. |++|++++|.
T Consensus 183 l~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 183 IKEFSPG---CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCBCTT---GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred ccccChh---hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 8887665 33333 56677777777777777777776654 8888888888
Q ss_pred CCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCC-----CCch----hHhhcccCceeecc
Q 047285 317 FNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG-----KIPT----SFARLCKLTSVDLS 387 (552)
Q Consensus 317 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~-----~~~~----~~~~l~~L~~l~l~ 387 (552)
+++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|. ..+ .+|. .+..+++|+.++++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECC
Confidence 87777777888888888888888887665555 7788888888887764 322 2332 56677777777776
Q ss_pred cccCCCCCccccccccccCC----------------------------CCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285 388 LIDLSQDFSQVLDTFSSCGA----------------------------YALESLDLSICQISGHLTNQLLQFKSLHTLEL 439 (552)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~----------------------------~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L 439 (552)
......... ..+.++ ++|++|++++|.+++..|..+..+++|+.|++
T Consensus 338 ~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 338 DNDIPGIKS-----NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp SCCBCCCCT-----TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccCCCCh-----hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 554433111 111222 24555555556666555666666666667777
Q ss_pred CCCcccCCCc-ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc--eecCHHhhhcCCCCCEEEccCCe
Q 047285 440 GHNSLFGPLP-PALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN--ASLSEIHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 440 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~ 516 (552)
++|++++.+| ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. +.+|. .+.++++|++|++++|+
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCC
Confidence 6666665444 45666666777777777666555666666677777777776664 34555 57777777778887777
Q ss_pred eeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 517 LILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 517 ~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
+.+..+..+..+.+|+.|++++|++++
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCcCChhhhccccccCEEeCCCCCccc
Confidence 776666667777778888888877764
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-42 Score=368.96 Aligned_cols=419 Identities=22% Similarity=0.189 Sum_probs=319.8
Q ss_pred CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285 82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA 161 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~ 161 (552)
.+++.|++++. .+.+..|..|.++++|++|++++|.+++. .|+.|+++++|++|++++|
T Consensus 56 ~~L~~L~Ls~n--------------------~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 56 SELQWLDLSRC--------------------EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp TTCCEEECTTC--------------------CCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTS
T ss_pred ccCcEEeCCCC--------------------cccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCC
Confidence 46777888763 56666666777777777777777777753 5777777777777777777
Q ss_pred cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCC----CCEEEc
Q 047285 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS----LKVLKL 237 (552)
Q Consensus 162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~----L~~L~l 237 (552)
++++..|..++++++|++|++++|.+..... ...+.++++|++|++++|.+.+.. +..+..+++ +++|++
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l----p~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKL----PAYFSNLTNLVHVDLSYNYIQTIT--VNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCC----CGGGGTCTTCCEEECCSSCCCEEC--TTTTHHHHHCTTCCCEEEC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceec----hHhHhhcCCCCEEEccCCcceecC--hhhhhhhhccccccceeec
Confidence 7776555667777777777777777654221 012667777777777777666531 111111111 224444
Q ss_pred CCCCCCCCCCCc--------------------------------------------------------------------
Q 047285 238 TKCQLCHFPPLL-------------------------------------------------------------------- 249 (552)
Q Consensus 238 ~~n~~~~~~~~~-------------------------------------------------------------------- 249 (552)
++|.+.+.++..
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 444443333322
Q ss_pred ------------ccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCC
Q 047285 250 ------------SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYF 317 (552)
Q Consensus 250 ------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 317 (552)
+..+++|+.|+++++.+... + .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~----~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-E----DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-C----CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred cccccccccccccccCCCCCEEEecCccchhh-h----hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 33445666666666655332 1 567789999999999999 5788 45 899999999999966
Q ss_pred CCCCCccCCCCCCCCEEEccCccceeec--CccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC
Q 047285 318 NSTTPGWLSKFNDLEFLSVAWNSLQGTI--SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF 395 (552)
Q Consensus 318 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 395 (552)
.+.. .+..+++|++|++++|.+++.. +.. +..+++|++|++++|. +++ +|..+..+++|+.++++........
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~-l~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHLDLSFNG-AII-MSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEEECCSCS-EEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEeECCCCc-ccc-chhhccCCCCCCeeECCCCccCCcc
Confidence 5544 5678999999999999998653 555 8889999999999998 664 6688999999999998876544321
Q ss_pred ccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCccCcc
Q 047285 396 SQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGFIPL 474 (552)
Q Consensus 396 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 474 (552)
. ...+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..|.
T Consensus 416 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 416 E----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp T----TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred C----hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 1 1234567899999999999999999999999999999999999997 4788999999999999999999988899
Q ss_pred cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcc-cccEEecCCCCCCCCCC
Q 047285 475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF-QLETLQLRSCHLGPHFP 546 (552)
Q Consensus 475 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~iP 546 (552)
.+.++++|++|++++|++++..|. .+.++++|++|++++|+++ .+|..+..+. +|+.|++++|++....|
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred hhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999988887 7999999999999999998 6677787776 69999999999997655
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-42 Score=366.24 Aligned_cols=431 Identities=21% Similarity=0.195 Sum_probs=326.6
Q ss_pred CcccCceEecCCC-----------CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285 69 CCKWAGVFCSNIT-----------GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137 (552)
Q Consensus 69 ~c~w~gv~c~~~~-----------~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 137 (552)
.|.|.|+ |+... .+++.|++++ +.+.+..|..+.++++|++|++++|.
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------------NKITYIGHGDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------------SCCCEECSSTTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------------------CccCccChhhhhcCCcccEEECCCCC
Confidence 4889888 86432 2566666665 57777778889999999999999999
Q ss_pred CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCC
Q 047285 138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS 217 (552)
Q Consensus 138 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~ 217 (552)
+++. .|+.|+.+++|++|++++|++++..|..++++++|++|++++|.++.++.. +.+..+++|++|++++|.+.
T Consensus 62 i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 62 INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSC
T ss_pred cCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh----hhhhccCCccEEECCCCccc
Confidence 9963 668899999999999999999987777799999999999999988754321 23788999999999999854
Q ss_pred CCcchh-hhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc
Q 047285 218 KASDWL-LVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296 (552)
Q Consensus 218 ~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 296 (552)
+ .++ ..+..+++|++|++++|.+.+..|..+..+++|+.|+++.|.+...... .+..+++|++|++++|.+++.
T Consensus 137 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 137 S--EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI---FADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp C--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH---HHHSTTTBSEEEEESCBCTTC
T ss_pred c--ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh---hHhhcccccEEEccCCccccc
Confidence 4 233 4678899999999999999888888887777777777666654322111 223455566666666555542
Q ss_pred ---------------------------Cc----hhhhcccCCcEEeccCCCCCCCCC---------cc------------
Q 047285 297 ---------------------------IP----IGLRNLTSLRHLDLRFNYFNSTTP---------GW------------ 324 (552)
Q Consensus 297 ---------------------------~~----~~l~~l~~L~~L~l~~n~l~~~~~---------~~------------ 324 (552)
.+ ..+..+++|+.+++++|.+.+... ..
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 11 122344566666666665543210 00
Q ss_pred --------------CCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchh---HhhcccCceeecc
Q 047285 325 --------------LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTS---FARLCKLTSVDLS 387 (552)
Q Consensus 325 --------------l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~---~~~l~~L~~l~l~ 387 (552)
+...++|+.|++++|.+. .+|...+..+++|++|++++|. +++.+|.. ++.+++|+.++++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECT
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEcc
Confidence 112357999999999987 7777644679999999999998 87776543 6778888888888
Q ss_pred cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285 388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467 (552)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 467 (552)
.+.... .+. ....+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|+
T Consensus 370 ~N~l~~--~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 370 QNHLRS--MQK-TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN 442 (549)
T ss_dssp TSCCCC--HHH-HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred CCcccc--ccc-chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence 765432 110 0112456789999999999998 57888889999999999999997 455443 3689999999999
Q ss_pred CCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
+++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+.+|+.|++++|++.+..|
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhhhc----ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 98643 47899999999999996 6886 4679999999999999998888788999999999999999999988
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-43 Score=375.41 Aligned_cols=388 Identities=19% Similarity=0.238 Sum_probs=311.2
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcC------------------------------------------
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF------------------------------------------ 163 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~------------------------------------------ 163 (552)
.+++.|+|+++.+.| .+|..++++++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 578999999999999 6999999999999999998843
Q ss_pred ------------------------------------CCCCccccCCCCCCCEEeccCCCCCC------------------
Q 047285 164 ------------------------------------AGMIPLQLGNLSNLQYLDLSGTFLSN------------------ 189 (552)
Q Consensus 164 ------------------------------------~~~lp~~l~~l~~L~~L~l~~n~l~~------------------ 189 (552)
++ +|..++++++|++|++++|.++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 34 78888889999999999988776
Q ss_pred CccccCCccccC--CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCC-CCCCcccCC------CCCcee
Q 047285 190 YDLHVDSLSWLS--GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCH-FPPLLSANF------SSLKAL 259 (552)
Q Consensus 190 ~~~~~~~~~~l~--~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L 259 (552)
+|. .+. ++++|++|++++|.+.+ .+|..+.++++|++|++++|. +++ ..|..+..+ ++|++|
T Consensus 239 ip~------~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 239 KTE------DLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TTS------CCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred Cch------hhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 443 256 88899999999998877 577788889999999999998 877 677666665 889999
Q ss_pred ecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC-CCEEEccC
Q 047285 260 HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-LEFLSVAW 338 (552)
Q Consensus 260 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~ 338 (552)
++++|.++ .+|.. ..+..+++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++
T Consensus 311 ~L~~n~l~-~ip~~-~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLK-TFPVE-TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCS-SCCCH-HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCC-ccCch-hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 99999888 44320 046788899999999999988888 8888899999999999888 67777888888 99999999
Q ss_pred ccceeecCccccCCCC--ccCEEeCCCCCCCCCCCchhHh-------hcccCceeecccccCCCCCccccccccccCCCC
Q 047285 339 NSLQGTISSVGLENLT--SIETLDLSGNSKLGGKIPTSFA-------RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409 (552)
Q Consensus 339 n~l~~~~~~~~l~~l~--~L~~L~l~~n~~l~~~~~~~~~-------~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 409 (552)
|.++ .+|.. +...+ +|+.|++++|. +++.+|..+. .+++|+.++++.+.... ++...+..+++
T Consensus 387 N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~ 458 (636)
T 4eco_A 387 NKLK-YIPNI-FDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSP 458 (636)
T ss_dssp SCCS-SCCSC-CCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCC
T ss_pred CcCc-ccchh-hhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCccCc-----CCHHHHccCCC
Confidence 9888 77765 55544 89999999998 8888888777 66777777776655442 12222334678
Q ss_pred CCEEEccCCcCcccCchh-hcCC-------CCCcEEECCCCcccCCCccccc--CCCCCCEEeCCCCcCCccCcccccCC
Q 047285 410 LESLDLSICQISGHLTNQ-LLQF-------KSLHTLELGHNSLFGPLPPALG--ELSSLKKLDLSNNMLNGFIPLSLGKL 479 (552)
Q Consensus 410 L~~L~ls~n~~~~~~~~~-l~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l 479 (552)
|++|++++|.++ .+|.. +... ++|+.|++++|+++ .+|..+. .+++|++|++++|++++ +|..+.++
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence 999999999888 44443 3322 28999999999988 7888776 88999999999999986 88888889
Q ss_pred CCCCeeeC------CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285 480 SHLEYLDL------SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 480 ~~L~~L~L------~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
++|++|++ ++|++.+.+|. .+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 99999998 45777888887 788899999999999998 67777665 68999999999765
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=356.71 Aligned_cols=403 Identities=24% Similarity=0.257 Sum_probs=303.3
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
+++++|++++|.+++. .+..|..+++|++|++++|++++..|..++++++|++|++++|.++.++.. .+..+++
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTT
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----hhcCccc
Confidence 5799999999999963 567899999999999999999987778899999999999999988776543 3889999
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc-
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL- 283 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L- 283 (552)
|++|++++|.+...+.. .++.+++|++|++++|.+.+. .|..+.++++|+.|++++|.+++..+. .+..+++|
T Consensus 102 L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~ 176 (570)
T 2z63_A 102 LQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMP 176 (570)
T ss_dssp CCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCT
T ss_pred cccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---Hccchhccc
Confidence 99999999999885432 478999999999999999874 588899999999999999999887666 55556666
Q ss_pred ---cEEeccCccccccCchhhhcccCCcEEeccCC---------------------------------------------
Q 047285 284 ---VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFN--------------------------------------------- 315 (552)
Q Consensus 284 ---~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--------------------------------------------- 315 (552)
+.+++++|.+.+..+..+... +|++|++++|
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 677777777665544444332 3444444443
Q ss_pred -------------CCCCCCCccCCCCCCCCEEEccCccceeecCccccCC--------------------CCccCEEeCC
Q 047285 316 -------------YFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN--------------------LTSIETLDLS 362 (552)
Q Consensus 316 -------------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~--------------------l~~L~~L~l~ 362 (552)
.+.+..+..+..+++|++|++++|.+. .+|.. +.. +++|+.|+++
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~ 333 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEE
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccCCccEEeeccCcccccCcccccccCEEeCc
Confidence 112223333444455555555555544 34433 333 3444444444
Q ss_pred CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285 363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442 (552)
Q Consensus 363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n 442 (552)
+|. ..+..+. ..+++|+.++++........ ..+..+..+++|++|++++|.+++..+. +..+++|+.|++++|
T Consensus 334 ~n~-~~~~~~~--~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 334 SNK-GGNAFSE--VDLPSLEFLDLSRNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp SCB-SCCBCCC--CBCTTCCEEECCSSCCBEEE---EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred CCc-ccccccc--ccCCCCCEEeCcCCccCccc---cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 444 3333332 44555555555543322110 0012344667889999999888865554 888999999999999
Q ss_pred cccCCCc-ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc-eecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285 443 SLFGPLP-PALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN-ASLSEIHFVNLTKLTWFSASGNSLILK 520 (552)
Q Consensus 443 ~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~ 520 (552)
++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|. .+..+++|++|++++|++.+.
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccC
Confidence 9987655 56889999999999999999888999999999999999999997 57887 789999999999999999999
Q ss_pred cCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285 521 FNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 521 ~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
.|..+..+++|+.|++++|++++..|+.+.
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 899999999999999999999987776654
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=375.16 Aligned_cols=440 Identities=20% Similarity=0.169 Sum_probs=346.1
Q ss_pred CcEEEEEcCCCCccC---C---CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcc--cCCCCCC
Q 047285 82 GHVLQLSLQNPFSYL---G---GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKY--LGSLENL 153 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~---~---~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~--~~~l~~L 153 (552)
.+++.|++++..... + +.++.++. .+...|.+.+..|..|.++++|++|+|++|.+.+ ..|.. ++.+++|
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRI-LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKAL 125 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCE-EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCE-EECCCCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCC
Confidence 467889998763211 1 22333333 2345578888889999999999999999999987 35554 8999999
Q ss_pred CEEeCCCCcCCCCCc-cccCCCCCCCEEeccCCCCCCCccccCCccccCCC--CCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285 154 RYLNLSGAKFAGMIP-LQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL--YMLEHLDLSQMNLSKASDWLLVTNSLP 230 (552)
Q Consensus 154 ~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l--~~L~~L~ls~n~~~~~~~~~~~~~~~~ 230 (552)
++|++++|.+++..| ..++++++|++|++++|.++..... .+..+ ++|+.|+++.|.+.+ ..+..+..++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-----~l~~l~~~~L~~L~L~~n~l~~--~~~~~~~~~~ 198 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-----ELEPLQGKTLSFFSLAANSLYS--RVSVDWGKCM 198 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-----GGHHHHHCSSCCCEECCSBSCC--CCCCCCCSSS
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-----HcccccCCccceEECCCCcccc--ccccchhhcC
Confidence 999999999987655 5799999999999999988764322 24444 899999999999887 3444444444
Q ss_pred C------CCEEEcCCCCCCCCCCCcccC--------------------------------------CCCCceeecCCCCC
Q 047285 231 S------LKVLKLTKCQLCHFPPLLSAN--------------------------------------FSSLKALHLAINNF 266 (552)
Q Consensus 231 ~------L~~L~l~~n~~~~~~~~~~~~--------------------------------------l~~L~~L~l~~n~~ 266 (552)
+ |++|++++|.+.+..+..+.. .++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 4 999999999876555433221 26899999999999
Q ss_pred CCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecC
Q 047285 267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346 (552)
Q Consensus 267 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 346 (552)
.+..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++
T Consensus 279 ~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~ 354 (844)
T 3j0a_A 279 FSLNSR---VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQ 354 (844)
T ss_dssp CEECSC---CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CC
T ss_pred cccChh---hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cC
Confidence 887777 78899999999999999998888899999999999999999999989999999999999999999974 44
Q ss_pred ccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcc---------------cc-ccccccCCCCC
Q 047285 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQ---------------VL-DTFSSCGAYAL 410 (552)
Q Consensus 347 ~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---------------~~-~~~~~~~~~~L 410 (552)
...+..+++|+.|++++|. +++. + .+++|+.+++..+....-... .+ .......+++|
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~-l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNA-LTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SSCSCSCCCCCEEEEETCC-SCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hhhhcCCCCCCEEECCCCC-CCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCcc
Confidence 4448999999999999998 6532 2 256666666654433210000 00 00113367899
Q ss_pred CEEEccCCcCcccCch-hhcCCCCCcEEECCCCccc-----CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285 411 ESLDLSICQISGHLTN-QLLQFKSLHTLELGHNSLF-----GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY 484 (552)
Q Consensus 411 ~~L~ls~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 484 (552)
++|++++|.+++..+. .+..+++|+.|++++|.++ +..+..+..+++|++|+|++|.+++..|..+..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999999865443 4566899999999999997 444567889999999999999999888888999999999
Q ss_pred eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
|+|++|++++..+. .+. ++|++|++++|++++..|..+. +|+.|++++|++....+
T Consensus 509 L~Ls~N~l~~l~~~-~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHN-DLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCC-CCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChh-hhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 99999999775554 444 8999999999999998887654 79999999999876443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-41 Score=368.99 Aligned_cols=394 Identities=18% Similarity=0.226 Sum_probs=241.6
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC-CCCcCCCC--------------------------------------
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL-SGAKFAGM-------------------------------------- 166 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L-~~~~~~~~-------------------------------------- 166 (552)
.+++.|+|+++.+.| .+|..++++++|++|+| ++|.+.|.
T Consensus 323 ~~V~~L~Ls~~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 579999999999999 59999999999999999 77755443
Q ss_pred --------------------------------------CccccCCCCCCCEEeccCCCCCCC--ccccC---------Cc
Q 047285 167 --------------------------------------IPLQLGNLSNLQYLDLSGTFLSNY--DLHVD---------SL 197 (552)
Q Consensus 167 --------------------------------------lp~~l~~l~~L~~L~l~~n~l~~~--~~~~~---------~~ 197 (552)
+|..++++++|++|++++|.++.. +.... .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 566666666677777766666540 00000 01
Q ss_pred c-ccC--CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCC-CCCCcccCC-------CCCceeecCCCC
Q 047285 198 S-WLS--GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCH-FPPLLSANF-------SSLKALHLAINN 265 (552)
Q Consensus 198 ~-~l~--~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~ 265 (552)
| .+. ++++|++|++++|.+.+ .+|..+.++++|++|++++|. +++ ..|..+.++ ++|+.|++++|.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred ChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 1 133 66666666666666655 455566666666666666666 555 444433333 366666666666
Q ss_pred CCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC-CCEEEccCccceee
Q 047285 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-LEFLSVAWNSLQGT 344 (552)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~ 344 (552)
+. .+|.. ..+..+++|++|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .
T Consensus 560 L~-~ip~~-~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPAS-ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCH-HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-ccCCh-hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 66 33220 03556666666666666666 555 5666666666666666666 55656666666 666666666666 5
Q ss_pred cCccccCCCC--ccCEEeCCCCCCCCCCCchhH---h--hcccCceeecccccCCCCCccccccccccCCCCCCEEEccC
Q 047285 345 ISSVGLENLT--SIETLDLSGNSKLGGKIPTSF---A--RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417 (552)
Q Consensus 345 ~~~~~l~~l~--~L~~L~l~~n~~l~~~~~~~~---~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 417 (552)
+|.. +..++ +|+.|++++|. +.+.+|... . .+++|+.++++.+... . ++...+..+++|+.|++++
T Consensus 634 lp~~-~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~---lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 634 IPNI-FNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQ--K---FPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCSC-CCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--S---CCHHHHHTTCCCSEEECCS
T ss_pred Cchh-hhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCC--c---cCHHHHccCCCCCEEECCC
Confidence 5543 44443 36666666666 555444221 1 1224444444433332 1 1111222455677777777
Q ss_pred CcCcccCchhhcCC--------CCCcEEECCCCcccCCCccccc--CCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 418 CQISGHLTNQLLQF--------KSLHTLELGHNSLFGPLPPALG--ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 418 n~~~~~~~~~l~~l--------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
|.++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+|
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 7666 344333322 26777777777766 5666665 67777777777777765 6666667777777777
Q ss_pred CC------cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285 488 SN------NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 488 ~~------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
++ |++.+.+|. .+.++++|++|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 784 s~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCCCcccccccccChH-HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 54 556666666 566677777777777777 56666544 46777777777665
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.1e-41 Score=350.39 Aligned_cols=399 Identities=19% Similarity=0.161 Sum_probs=270.7
Q ss_pred cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL 197 (552)
Q Consensus 118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 197 (552)
+|..+. ++|++|++++|.+++. .|..|..+++|++|++++|++++..|..++++++|++|++++|.++.+|.
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----- 86 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC----- 86 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-----
T ss_pred cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-----
Confidence 444443 5666666666666542 34556666666666666666665555566666666666666665554432
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCC--ceeecCCCCC--CCCCccc
Q 047285 198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL--KALHLAINNF--DNSLFQY 273 (552)
Q Consensus 198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~ 273 (552)
. .+++|++|++++|.+.+. .++..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..+..
T Consensus 87 --~-~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 87 --H-PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp --C-CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred --c-ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence 1 455666666666665542 233445556666666666665544 234444444 5555555555 3322221
Q ss_pred cc-----------------------------------------------------cccCCCCccEEeccCccccccCchh
Q 047285 274 GS-----------------------------------------------------WVFGLRNLVFIDLSSNQFQGQIPIG 300 (552)
Q Consensus 274 ~~-----------------------------------------------------~~~~l~~L~~L~L~~n~~~~~~~~~ 300 (552)
.. .+..+++|+.|++++|.+.+..+..
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 10 1223344444444444444322211
Q ss_pred hh---cccCCcEEeccCCCCCCCCCccC-----CCCCCCCEEEccCccceeecCccccCCC---CccCEEeCCCCCCCCC
Q 047285 301 LR---NLTSLRHLDLRFNYFNSTTPGWL-----SKFNDLEFLSVAWNSLQGTISSVGLENL---TSIETLDLSGNSKLGG 369 (552)
Q Consensus 301 l~---~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~l~~l---~~L~~L~l~~n~~l~~ 369 (552)
+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+|...+..+ .+|+.|++++|. +..
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~ 316 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVH 316 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-ccc
Confidence 11 13588999999999998888888 8899999999999888 5553223333 578999999987 543
Q ss_pred CCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc--cCchhhcCCCCCcEEECCCCcccCC
Q 047285 370 KIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG--HLTNQLLQFKSLHTLELGHNSLFGP 447 (552)
Q Consensus 370 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~ 447 (552)
.. .+..+++|+.++++......... ..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 317 ~~--~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 317 ML--CPSKISPFLHLDFSNNLLTDTVF-----ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTT-----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred cc--chhhCCcccEEEeECCccChhhh-----hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 22 12567778888877665443222 234567799999999999997 5667899999999999999999976
Q ss_pred Cccc-ccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC-C
Q 047285 448 LPPA-LGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN-W 525 (552)
Q Consensus 448 ~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~ 525 (552)
+|.. +..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|. .+..+++|++|++++|++. .+|.. +
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 7764 78899999999999999888887664 79999999999996 7887 5669999999999999999 56665 8
Q ss_pred cCcccccEEecCCCCCCCCCC
Q 047285 526 VPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 526 ~~~~~L~~L~l~~n~~~~~iP 546 (552)
..+.+|+.|++++|++++..+
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcccEEECcCCCCcccCC
Confidence 889999999999999998765
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.4e-40 Score=337.30 Aligned_cols=367 Identities=24% Similarity=0.246 Sum_probs=238.7
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCC-ccccCCCCCCCEEeccCCCCCCCccccCCccccCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMI-PLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLY 204 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~ 204 (552)
++|++|++++|.+++. .|..++++++|++|++++|.+.+.+ |..+.++++|++|++++|.++..... .+..++
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-----AFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-----TTTTCT
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-----hccCcc
Confidence 5666777776666642 4566666667777777666665444 34566666666666666665443211 145555
Q ss_pred CCCEEeCCCCcCCCCcchhhh--cCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 205 MLEHLDLSQMNLSKASDWLLV--TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 205 ~L~~L~ls~n~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
+|++|++++|.+.+ ..+.. +..+++|++|++++|.+.+..|.. .+..+++
T Consensus 104 ~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------~~~~l~~ 155 (455)
T 3v47_A 104 NLEVLTLTQCNLDG--AVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------------------FFLNMRR 155 (455)
T ss_dssp TCCEEECTTSCCBT--HHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------------GGGGCTT
T ss_pred cCCEEeCCCCCCCc--cccCcccccCcccCCEEECCCCccCccCccc--------------------------ccCCCCc
Confidence 55555555555544 12221 444555555555555554444332 1334444
Q ss_pred ccEEeccCccccccCchhhhcc--cCCcEEeccCCCCCCCCCcc--------CCCCCCCCEEEccCccceeecCccccC-
Q 047285 283 LVFIDLSSNQFQGQIPIGLRNL--TSLRHLDLRFNYFNSTTPGW--------LSKFNDLEFLSVAWNSLQGTISSVGLE- 351 (552)
Q Consensus 283 L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~l~- 351 (552)
|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+.. +.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~ 234 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFD 234 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhc
Confidence 4444444444444444444333 44555555555554433322 224456666666666666544443 22
Q ss_pred --CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhc
Q 047285 352 --NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL 429 (552)
Q Consensus 352 --~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~ 429 (552)
..++|+.|++++|. ..+.... ...++.+.. ........++|++|++++|.+++..|..+.
T Consensus 235 ~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 235 AIAGTKIQSLILSNSY-NMGSSFG-HTNFKDPDN----------------FTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp HTTTCCEEEEECTTCT-TTSCCTT-CCSSCCCCT----------------TTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred cccccceeeEeecccc-ccccccc-hhhhccCcc----------------cccccccccCceEEEecCccccccchhhcc
Confidence 22567777777765 3221100 000000000 000111235899999999999999999999
Q ss_pred CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCE
Q 047285 430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW 509 (552)
Q Consensus 430 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 509 (552)
.+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|. .+..+++|++
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 375 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKE 375 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-hccccccccE
Confidence 999999999999999988888999999999999999999888888899999999999999999887777 7899999999
Q ss_pred EEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 510 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
|++++|++.+..+..+..+++|+.|++++|++++.+|
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999997666667889999999999999999998
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-41 Score=329.92 Aligned_cols=296 Identities=28% Similarity=0.381 Sum_probs=251.4
Q ss_pred CCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcc--cCceEecCCC--CcEEEEEcCCCCccCCCCchhhcccCcccc
Q 047285 36 GCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCK--WAGVFCSNIT--GHVLQLSLQNPFSYLGGDLREVKAGSNYER 111 (552)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~ 111 (552)
.|.++|++||++||+++.+|. .+++|+. +.+||. |.||+|+... ++|+.|++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------------- 59 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------------- 59 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------------
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCC--------------------
Confidence 599999999999999998876 6889986 678998 9999998654 8999999998
Q ss_pred Ccccc--ccCccccCCCCCCEEeCCC-CcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCC
Q 047285 112 SKLGG--KVNPSLVDLKHLIHLDLSG-NDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188 (552)
Q Consensus 112 ~~~~~--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 188 (552)
+.+.+ .+|+.+.++++|++|++++ |.+.+ .+|..++++++|++|++++|++++.+|..++++++|++|++++|.+.
T Consensus 60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp CCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 47888 8999999999999999995 88888 58999999999999999999999999999999999999999999876
Q ss_pred C-CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC-CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCC
Q 047285 189 N-YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP-SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF 266 (552)
Q Consensus 189 ~-~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 266 (552)
. +|. .+..+++|++|++++|.+++ .++..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.+
T Consensus 139 ~~~p~------~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 139 GTLPP------SISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp SCCCG------GGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred CcCCh------HHhcCCCCCeEECcCCcccC--cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 3 332 37788899999999998875 4566677777 889999999888888888888776 88888888888
Q ss_pred CCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecC
Q 047285 267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346 (552)
Q Consensus 267 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 346 (552)
++..+. .+..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|
T Consensus 210 ~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 210 EGDASV---LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EECCGG---GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cCcCCH---HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 877776 777888888888888888866654 7778888888888888888888888888888888888888888887
Q ss_pred ccccCCCCccCEEeCCCCCCCCC
Q 047285 347 SVGLENLTSIETLDLSGNSKLGG 369 (552)
Q Consensus 347 ~~~l~~l~~L~~L~l~~n~~l~~ 369 (552)
.. ..+++|+.+++++|+.+.|
T Consensus 286 ~~--~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 286 QG--GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CS--TTGGGSCGGGTCSSSEEES
T ss_pred CC--ccccccChHHhcCCCCccC
Confidence 74 6788888888888874444
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-40 Score=347.17 Aligned_cols=406 Identities=21% Similarity=0.217 Sum_probs=312.8
Q ss_pred ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS 196 (552)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 196 (552)
.+|+.+. ++|++|++++|.+++. .|..|+.+++|++|++++|++++..|..++++++|++|++++|.++..+..
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 92 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS--- 92 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH---
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH---
Confidence 4566554 7999999999999973 678899999999999999999988888999999999999999988775532
Q ss_pred ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS 275 (552)
Q Consensus 197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 275 (552)
.+..+++|++|++++|.+.+. ..+..+.++++|++|++++|. +...++..+.++++|++|++++|.+.+..+.
T Consensus 93 --~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 166 (549)
T 2z81_A 93 --WFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--- 166 (549)
T ss_dssp --HHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---
T ss_pred --HhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh---
Confidence 278999999999999998864 234567899999999999998 5556667899999999999999999998887
Q ss_pred cccCCCCccEEeccCccccccCchh-hhcccCCcEEeccCCCCCCCC--C-ccCCCCCCCCEEEccCccceeecCcc---
Q 047285 276 WVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTT--P-GWLSKFNDLEFLSVAWNSLQGTISSV--- 348 (552)
Q Consensus 276 ~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~--- 348 (552)
.+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 8889999999999999886 34444 456899999999999998752 1 12234556666666666554321100
Q ss_pred ------------------------------ccCC-----------------------------CCccCEEeCCCCCCCCC
Q 047285 349 ------------------------------GLEN-----------------------------LTSIETLDLSGNSKLGG 369 (552)
Q Consensus 349 ------------------------------~l~~-----------------------------l~~L~~L~l~~n~~l~~ 369 (552)
.+.. .++|+.|++++|. +.
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~- 323 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VF- 323 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CC-
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cc-
Confidence 0111 2356666777665 44
Q ss_pred CCchhH-hhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCc--hhhcCCCCCcEEECCCCcccC
Q 047285 370 KIPTSF-ARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT--NQLLQFKSLHTLELGHNSLFG 446 (552)
Q Consensus 370 ~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~ 446 (552)
.+|..+ ..+++|+.++++.+......... ...+..+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred cCCHHHHhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 566665 46888888777765543211100 1123456789999999998876543 45788899999999999888
Q ss_pred CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285 447 PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV 526 (552)
Q Consensus 447 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 526 (552)
.+|..+..+++|++|++++|.++ .+|..+ .++|++|++++|++++.+ ..+++|++|++++|++. .+|. ..
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-----ccCChhcEEECCCCccC-cCCC-cc
Confidence 67888888889999999999887 455443 368999999999887632 47899999999999998 6665 56
Q ss_pred CcccccEEecCCCCCCCCCCcccc
Q 047285 527 PPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 527 ~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
.+++|+.|++++|++++..|+++.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGG
T ss_pred cCccCCEEecCCCccCCcCHHHHh
Confidence 788999999999999988887665
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-39 Score=332.63 Aligned_cols=384 Identities=22% Similarity=0.217 Sum_probs=268.4
Q ss_pred CCcccCc--eEecCCC--------CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285 68 DCCKWAG--VFCSNIT--------GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137 (552)
Q Consensus 68 ~~c~w~g--v~c~~~~--------~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 137 (552)
..|.|.+ +.|+... .+++.|++++ +.+.+..|..+.++++|++|++++|.
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~--------------------n~i~~~~~~~~~~l~~L~~L~L~~n~ 65 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL--------------------NSIAELNETSFSRLQDLQFLKVEQQT 65 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS--------------------SCCCEECTTTTSSCTTCCEEECCCCS
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC--------------------CccCcCChhHhccCccccEEECcCCc
Confidence 4455555 7776422 4678888877 47888778899999999999999999
Q ss_pred CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCC
Q 047285 138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS 217 (552)
Q Consensus 138 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~ 217 (552)
+.+.-.+..|+.+++|++|++++|++++..|..++++++|++|++++|.++...... ..+..+++|++|++++|.+.
T Consensus 66 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 66 PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---STTTTCTTCCEEECCSSBCC
T ss_pred ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---ccccCcccCCEEECCCCccC
Confidence 876323677999999999999999999888999999999999999999876521111 12778999999999999998
Q ss_pred CCcchhhh-cCCCCCCCEEEcCCCCCCCCCCCcccCC--CCCceeecCCCCCCCCCccccc-----cccCCCCccEEecc
Q 047285 218 KASDWLLV-TNSLPSLKVLKLTKCQLCHFPPLLSANF--SSLKALHLAINNFDNSLFQYGS-----WVFGLRNLVFIDLS 289 (552)
Q Consensus 218 ~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~-----~~~~l~~L~~L~L~ 289 (552)
+. .+.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.... .+..+++|++|+++
T Consensus 143 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 143 KI--QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp SC--CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cc--CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 74 2333 6789999999999999999999888876 6899999999998876544211 13356899999999
Q ss_pred CccccccCchhhhcc---cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC--CCCccCEEeCCCC
Q 047285 290 SNQFQGQIPIGLRNL---TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE--NLTSIETLDLSGN 364 (552)
Q Consensus 290 ~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~--~l~~L~~L~l~~n 364 (552)
+|.+.+..|..+... ++|+.|++++|...+..... ..++.+ .... +. ..++|+.|++++|
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~-------------~~~~-~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDP-------------DNFT-FKGLEASGVKTCDLSKS 285 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-CSSCCC-------------CTTT-TGGGTTSCCCEEECCSS
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccch-hhhccC-------------cccc-cccccccCceEEEecCc
Confidence 999998888777655 88999999998765532110 001000 0000 11 1245666666666
Q ss_pred CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 444 (552)
. +.+..|..+..++ +|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 286 ~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 286 K-IFALLKSVFSHFT-----------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp C-CCEECTTTTTTCT-----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred c-ccccchhhcccCC-----------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 5 5555554444443 566666666666655555666666666666666666
Q ss_pred cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..+++|++|++++|++.+.+|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence 655555666666666666666666655566666666666666666666543332 45566666666666666666655
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-40 Score=344.29 Aligned_cols=383 Identities=20% Similarity=0.204 Sum_probs=301.3
Q ss_pred CEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285 129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH 208 (552)
Q Consensus 129 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~ 208 (552)
++|++++|.++ .+|..+. ++|++|++++|++++..|..+.++++|++|++++|.++.++.. .+..+++|++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-----VFKFNQELEY 73 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-----GGTTCTTCCE
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-----HhhcccCCCE
Confidence 68999999999 5788776 8999999999999988888999999999999999998765322 3889999999
Q ss_pred EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc--cE
Q 047285 209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL--VF 285 (552)
Q Consensus 209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L--~~ 285 (552)
|++++|.++.. +.. .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+. .+..+++| ++
T Consensus 74 L~Ls~N~l~~l---p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~ 142 (520)
T 2z7x_B 74 LDLSHNKLVKI---SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIAHLNISK 142 (520)
T ss_dssp EECCSSCCCEE---ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGTTSCEEE
T ss_pred EecCCCceeec---Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccccceeeE
Confidence 99999999864 333 799999999999999984 678999999999999999998763 45566777 99
Q ss_pred EeccCccc--cccCchhhhc--------------------------ccCCcEEeccCCC-------CCCCCCccCCCC--
Q 047285 286 IDLSSNQF--QGQIPIGLRN--------------------------LTSLRHLDLRFNY-------FNSTTPGWLSKF-- 328 (552)
Q Consensus 286 L~L~~n~~--~~~~~~~l~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~l-- 328 (552)
|++++|.+ .+..|..+.. +++|+.+++++|. +.+.++ .+..+
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 99999988 6666666655 3444455554443 111111 12222
Q ss_pred -------------------------CCCCEEEccCccceeecCcccc-----CCCCccCEEeCCCCCCCCCCCc-hhHhh
Q 047285 329 -------------------------NDLEFLSVAWNSLQGTISSVGL-----ENLTSIETLDLSGNSKLGGKIP-TSFAR 377 (552)
Q Consensus 329 -------------------------~~L~~L~l~~n~l~~~~~~~~l-----~~l~~L~~L~l~~n~~l~~~~~-~~~~~ 377 (552)
++|++|++++|.++|.+|.. + ..+++|+.+++++|. + .+| ..+..
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~-~--~~p~~~~~~ 297 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDV-F--GFPQSYIYE 297 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECC-C--CSCTHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc-hhhcccccCceeEeccccccc-e--ecchhhhhc
Confidence 35666666666666666665 4 667777777777776 4 445 44544
Q ss_pred c---ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC--CCcccc
Q 047285 378 L---CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG--PLPPAL 452 (552)
Q Consensus 378 l---~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l 452 (552)
+ .+|+.++++......... ...+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred ccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 4 446666665544322110 1467799999999999999899999999999999999999986 567789
Q ss_pred cCCCCCCEEeCCCCcCCccCccc-ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccc
Q 047285 453 GELSSLKKLDLSNNMLNGFIPLS-LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL 531 (552)
Q Consensus 453 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L 531 (552)
..+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|. .+. ++|++|++++|++. .+|..+..+++|
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence 99999999999999999867764 78899999999999999887765 332 79999999999998 788888899999
Q ss_pred cEEecCCCCCCCCCCcc
Q 047285 532 ETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 532 ~~L~l~~n~~~~~iP~~ 548 (552)
+.|++++|+++ .+|..
T Consensus 447 ~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 447 QELNVASNQLK-SVPDG 462 (520)
T ss_dssp CEEECCSSCCC-CCCTT
T ss_pred CEEECCCCcCC-ccCHH
Confidence 99999999999 78875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9e-39 Score=338.06 Aligned_cols=398 Identities=19% Similarity=0.147 Sum_probs=261.3
Q ss_pred cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL 197 (552)
Q Consensus 118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 197 (552)
+|..+. ++|++|++++|.+++. .|..|+.+++|++|++++|++++..|..++++++|++|++++|.++.+|..
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---- 118 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---- 118 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC----
T ss_pred CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc----
Confidence 444332 6677777777776652 345666777777777777777665566667777777777777766654421
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCC--ceeecCCCCC--CCCCccc
Q 047285 198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL--KALHLAINNF--DNSLFQY 273 (552)
Q Consensus 198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~ 273 (552)
.+++|++|++++|.+.+. ..+..+.++++|++|++++|.+.+. .+..+++| +.|++++|.+ .+..+..
T Consensus 119 ----~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 119 ----PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp ----CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred ----ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence 566677777777766553 1234556666777777777666543 23334444 6666666666 4433331
Q ss_pred cc-----------------------cccCCCCccEEeccCcc----------------------------cccc----Cc
Q 047285 274 GS-----------------------WVFGLRNLVFIDLSSNQ----------------------------FQGQ----IP 298 (552)
Q Consensus 274 ~~-----------------------~~~~l~~L~~L~L~~n~----------------------------~~~~----~~ 298 (552)
.. .+..+++|+.+++++|. +.+. ++
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 11 12234566666666653 1111 11
Q ss_pred hhhhcccCCcEEeccCCCCCCCCCccC-----CCCCCCCEEEccCccceeecCccccCC---CCccCEEeCCCCCCCCCC
Q 047285 299 IGLRNLTSLRHLDLRFNYFNSTTPGWL-----SKFNDLEFLSVAWNSLQGTISSVGLEN---LTSIETLDLSGNSKLGGK 370 (552)
Q Consensus 299 ~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~l~~---l~~L~~L~l~~n~~l~~~ 370 (552)
.. ...++|++|++++|.+++.+|..+ .+++.|+.+++..+.+ .+|...+.. ..+|+.|++++|. +...
T Consensus 271 ~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~ 346 (562)
T 3a79_B 271 QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHM 346 (562)
T ss_dssp HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCC
T ss_pred Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-cccc
Confidence 11 122488999999999998888776 5555555555555544 233211111 1457777777776 3321
Q ss_pred CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc--CchhhcCCCCCcEEECCCCcccCCC
Q 047285 371 IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH--LTNQLLQFKSLHTLELGHNSLFGPL 448 (552)
Q Consensus 371 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~ 448 (552)
. ....+++|+.++++........ +..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++.+
T Consensus 347 ~--~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 347 V--CPPSPSSFTFLNFTQNVFTDSV-----FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTT-----TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred c--CccCCCCceEEECCCCccccch-----hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 1 1145666666666655443211 12234567899999999999873 4567889999999999999999756
Q ss_pred cc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC-Cc
Q 047285 449 PP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN-WV 526 (552)
Q Consensus 449 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~ 526 (552)
|. .+..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 65 478899999999999999887776654 78999999999995 6777 4559999999999999998 56665 88
Q ss_pred CcccccEEecCCCCCCCCCC
Q 047285 527 PPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 527 ~~~~L~~L~l~~n~~~~~iP 546 (552)
.+++|+.|++++|++.+..|
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCEEEecCCCcCCCcc
Confidence 88999999999999998766
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-37 Score=333.54 Aligned_cols=415 Identities=22% Similarity=0.175 Sum_probs=291.7
Q ss_pred CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCc
Q 047285 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD 191 (552)
Q Consensus 112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~ 191 (552)
|.+++..+.+|.++++|++|+|++|.++++ .|+.|+++++|++|+|++|++++..+..|.++++|++|++++|.++.++
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 578777677899999999999999999963 4567999999999999999999766677899999999999999988776
Q ss_pred cccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCc----eeecCCCCCC
Q 047285 192 LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLK----ALHLAINNFD 267 (552)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~~~ 267 (552)
... ++++++|++|++++|.+... ..+..+..+++|++|++++|.+.+..+..+..+.+++ .++++.|.+.
T Consensus 141 ~~~-----~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 141 NFP-----IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp TCC-----CTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred hhh-----hhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 432 78899999999999998764 3566778899999999999999888776665544433 3444444433
Q ss_pred CCCcccc-------------------------------------------------------------------------
Q 047285 268 NSLFQYG------------------------------------------------------------------------- 274 (552)
Q Consensus 268 ~~~~~~~------------------------------------------------------------------------- 274 (552)
...+...
T Consensus 215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 2111100
Q ss_pred -----ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc
Q 047285 275 -----SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349 (552)
Q Consensus 275 -----~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 349 (552)
..+....+++.+.+.++.+... ..+.....++.|++.+|.+.+..+. .++.|+.+.+..|.......
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~~--- 366 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFS--- 366 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBCC---
T ss_pred ccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCcc---
Confidence 0011112233333333333211 1233445566666666655443322 23344444444444332111
Q ss_pred cCCCCccCEEeCCCCCCCC--CCCchhHhhcccCceeecccccCCC-----C--------------CccccccccccCCC
Q 047285 350 LENLTSIETLDLSGNSKLG--GKIPTSFARLCKLTSVDLSLIDLSQ-----D--------------FSQVLDTFSSCGAY 408 (552)
Q Consensus 350 l~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~L~~l~l~~~~~~~-----~--------------~~~~~~~~~~~~~~ 408 (552)
...+++|+.+++++|. +. +..+..+..+.+|+.+++....... . .........+..+.
T Consensus 367 ~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccc-cccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 2345566666666654 32 2233444444444444433221110 0 00001122345677
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
+++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|++|++++|++++..|..+.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 8999999999999888888999999999999999854 456788999999999999999999888999999999999999
Q ss_pred CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCc-ccccEEecCCCCCCC
Q 047285 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP-FQLETLQLRSCHLGP 543 (552)
Q Consensus 488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 543 (552)
++|++++..+. .+.++++|++|+|++|++++..|..+..+ .+|+.|++++|+++-
T Consensus 526 s~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999877676 79999999999999999999999888887 689999999999874
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-37 Score=319.23 Aligned_cols=355 Identities=21% Similarity=0.198 Sum_probs=280.5
Q ss_pred cccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccC
Q 047285 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVD 195 (552)
Q Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 195 (552)
+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|++++ +| ++++++|++|++++|.++.++
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----
T ss_pred cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee----
Confidence 3444568899999999999999995 46 68999999999999999986 44 899999999999999988753
Q ss_pred CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285 196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS 275 (552)
Q Consensus 196 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 275 (552)
+..+++|++|++++|.+++.+ +..+++|++|++++|.+++.. +..+++|++|++++|...+.+
T Consensus 102 ----~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~----- 164 (457)
T 3bz5_A 102 ----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL----- 164 (457)
T ss_dssp ----CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC-----
T ss_pred ----cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc-----
Confidence 788999999999999998742 788999999999999999852 788999999999999766554
Q ss_pred cccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285 276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355 (552)
Q Consensus 276 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 355 (552)
.+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~ 234 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQ 234 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTT
T ss_pred ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCC
Confidence 35678999999999999986 45 78899999999999999886 37889999999999999996 55 778999
Q ss_pred cCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCc
Q 047285 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLH 435 (552)
Q Consensus 356 L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~ 435 (552)
|+.|++++|. +++..+ ..+++|+.+++.. .+|+.|++++|.+.+.+| +..+++|+
T Consensus 235 L~~L~l~~N~-l~~~~~---~~l~~L~~L~l~~-------------------n~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 235 LTYFDCSVNP-LTELDV---STLSKLTTLHCIQ-------------------TDLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CSEEECCSSC-CSCCCC---TTCTTCCEEECTT-------------------CCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred CCEEEeeCCc-CCCcCH---HHCCCCCEEeccC-------------------CCCCEEECCCCccCCccc--ccccccCC
Confidence 9999999998 877543 4556666665542 256667777777666665 35667777
Q ss_pred EEECCCCcccCCCcc--------cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCC
Q 047285 436 TLELGHNSLFGPLPP--------ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507 (552)
Q Consensus 436 ~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 507 (552)
.|++++|...+.+|. .+..+++|++|++++|++++ ++ +.++++|+.|++++|++++ + +.|
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l--------~~L 357 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-F--------SSV 357 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-C--------TTG
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-c--------ccc
Confidence 777777766554443 24455778888888888876 33 7778888888888888865 2 344
Q ss_pred CEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCccc
Q 047285 508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWL 549 (552)
Q Consensus 508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l 549 (552)
..|++++|.+.|. ..+..|..+++++|+++|.||..+
T Consensus 358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 5556777777765 244567777888888888887654
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.2e-37 Score=315.33 Aligned_cols=356 Identities=26% Similarity=0.344 Sum_probs=277.0
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+..+++|++|++++|.+++ +|. ++.+++|++|++++|.+.+..| ++++++|++|++++|.++.++ .+
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~ 130 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-------PL 130 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GG
T ss_pred chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-------HH
Confidence 37889999999999999985 455 8999999999999999986544 999999999999999887654 27
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 280 (552)
..+++|++|++++|.+...+ .+..+++|++|++. +.+.+..+ +.++++|+.|++++|.+.+.. .+..+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-----~l~~l 198 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-----VLAKL 198 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGGGC
T ss_pred cCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-----hhccC
Confidence 88999999999999988743 36789999999996 44544433 788899999999999877642 46778
Q ss_pred CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 360 (552)
++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ 271 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELK 271 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEE
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEE
Confidence 899999999998886554 77789999999999988764 357788899999999998875433 67888999999
Q ss_pred CCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECC
Q 047285 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELG 440 (552)
Q Consensus 361 l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~ 440 (552)
+++|. +++..+ +..+ ++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 272 l~~n~-l~~~~~--~~~l-----------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 272 LGANQ-ISNISP--LAGL-----------------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CCSSC-CCCCGG--GTTC-----------------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCCc-cCcccc--ccCC-----------------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 99987 654332 3333 478888888888886554 7788889999999
Q ss_pred CCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285 441 HNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK 520 (552)
Q Consensus 441 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 520 (552)
+|++++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++.
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence 998886554 67888999999999988854 467788899999999998877665 67888899999999888762
Q ss_pred ---------cCCCCcCcccccEEecCCCCCCC----CCCccccc
Q 047285 521 ---------FNPNWVPPFQLETLQLRSCHLGP----HFPSWLHS 551 (552)
Q Consensus 521 ---------~~~~~~~~~~L~~L~l~~n~~~~----~iP~~l~~ 551 (552)
+|..+ .++....+....+++ ..|+|+++
T Consensus 391 p~~~~~~~~ip~~~---~~~~~~~~~~~~is~~g~~~~~~~~w~ 431 (466)
T 1o6v_A 391 PVNYKANVSIPNTV---KNVTGALIAPATISDGGSYTEPDITWN 431 (466)
T ss_dssp CBCCCSEEEEECCC---BCTTSCBCCCSEESTTCEEETTEEEEE
T ss_pred chhhcccceecccc---cccCCCeecCceecCCcEEeCCceEEC
Confidence 23222 234444555555554 46766653
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-37 Score=316.42 Aligned_cols=347 Identities=27% Similarity=0.342 Sum_probs=291.8
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 202 (552)
..+++++.|+++++.+. .+|. +..+++|++|++++|.+++. |. +.++++|++|++++|.+...+. +..
T Consensus 43 ~~l~~l~~L~l~~~~i~--~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-------LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-------GTT
T ss_pred hHhccccEEecCCCCCc--cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-------hcC
Confidence 45789999999999998 4564 78899999999999999865 44 9999999999999998876542 789
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
+++|++|++++|.+.+.+. +..+++|++|++++|.+.+.. .+..+++|+.|+++ +.+.+.. .+..+++
T Consensus 111 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~-----~~~~l~~ 178 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK-----PLANLTT 178 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-----GGTTCTT
T ss_pred CCCCCEEECCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-----hhccCCC
Confidence 9999999999999987532 788999999999999988754 47889999999996 4443322 4678899
Q ss_pred ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285 283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362 (552)
Q Consensus 283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~ 362 (552)
|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLA 251 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECC
T ss_pred CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECC
Confidence 99999999998753 358889999999999999887665 6778999999999998874 33 27788999999999
Q ss_pred CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285 363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442 (552)
Q Consensus 363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n 442 (552)
+|. +.+..+ +. .+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 252 ~n~-l~~~~~--~~-----------------------------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 252 NNQ-ISNLAP--LS-----------------------------GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp SSC-CCCCGG--GT-----------------------------TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCc-cccchh--hh-----------------------------cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 997 654433 33 33489999999999997654 888999999999999
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
++.+..+ +..+++|++|++++|.+++..| +..+++|++|++++|++++. + .+..+++|++|++++|++.+..|
T Consensus 298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch
Confidence 9986433 8899999999999999997655 67899999999999999774 3 58999999999999999998877
Q ss_pred CCCcCcccccEEecCCCCCCC
Q 047285 523 PNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 523 ~~~~~~~~L~~L~l~~n~~~~ 543 (552)
+..+++|+.|++++|++++
T Consensus 371 --~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GTTCTTCCEEECCCEEEEC
T ss_pred --hhcCCCCCEEeccCCcccC
Confidence 7889999999999999996
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-37 Score=317.39 Aligned_cols=368 Identities=24% Similarity=0.226 Sum_probs=230.9
Q ss_pred CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCC-------------CEEeCCCCcCCCCCccccCCCCCCC
Q 047285 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENL-------------RYLNLSGAKFAGMIPLQLGNLSNLQ 178 (552)
Q Consensus 112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L-------------~~L~L~~~~~~~~lp~~l~~l~~L~ 178 (552)
+.+ |.+|++++++++|++|++++|.+.+ .+|..++++++| ++|++++|++++ +|.. .++|+
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~ 94 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWER-NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLE 94 (454)
T ss_dssp --------------CCHHHHHHHHHHHHH-TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCS
T ss_pred Cch-hhCChhHhcccchhhhhccCCcccc-cCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCC
Confidence 356 7888888888888888888888877 478888877764 888888888874 4542 36788
Q ss_pred EEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCce
Q 047285 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKA 258 (552)
Q Consensus 179 ~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 258 (552)
+|++++|.++.+|. .+++|++|++++|.+++.+..+ ++|++|++++|.+.+. | .+.++++|++
T Consensus 95 ~L~l~~n~l~~lp~---------~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~l-p-~~~~l~~L~~ 157 (454)
T 1jl5_A 95 SLVASCNSLTELPE---------LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKL-P-ELQNSSFLKI 157 (454)
T ss_dssp EEECCSSCCSSCCC---------CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred EEEccCCcCCcccc---------ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCC-c-ccCCCCCCCE
Confidence 88888887776542 1367888888888777643321 5788888888888774 3 4788888888
Q ss_pred eecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285 259 LHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338 (552)
Q Consensus 259 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 338 (552)
|++++|.+++ ++. . ..+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++
T Consensus 158 L~l~~N~l~~-lp~---~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 158 IDVDNNSLKK-LPD---L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp EECCSSCCSC-CCC---C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred EECCCCcCcc-cCC---C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 8888888775 333 2 2478888888888875 55 57788888888888888775 3332 25788888888
Q ss_pred ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCC
Q 047285 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418 (552)
Q Consensus 339 n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n 418 (552)
|.++ .+|. +..+++|+.|++++|. +++ +|.. +++|+.++++.+.... .+. ..++|++|++++|
T Consensus 225 n~l~-~lp~--~~~l~~L~~L~l~~N~-l~~-l~~~---~~~L~~L~l~~N~l~~--l~~-------~~~~L~~L~ls~N 287 (454)
T 1jl5_A 225 NILE-ELPE--LQNLPFLTTIYADNNL-LKT-LPDL---PPSLEALNVRDNYLTD--LPE-------LPQSLTFLDVSEN 287 (454)
T ss_dssp SCCS-SCCC--CTTCTTCCEEECCSSC-CSS-CCSC---CTTCCEEECCSSCCSC--CCC-------CCTTCCEEECCSS
T ss_pred CcCC-cccc--cCCCCCCCEEECCCCc-CCc-cccc---ccccCEEECCCCcccc--cCc-------ccCcCCEEECcCC
Confidence 8877 6663 7778888888888887 654 4432 3566666666544332 211 1247888888888
Q ss_pred cCcccCchhhcCCCCCcEEECCCCcccCCCcccccCC-CCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecC
Q 047285 419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL-SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLS 497 (552)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 497 (552)
.+++.. . -.++|+.|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|
T Consensus 288 ~l~~l~-~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 288 IFSGLS-E---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp CCSEES-C---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred ccCccc-C---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence 877621 1 12577788888887764 22 22 477888888887774 5544 467888888888775 455
Q ss_pred HHhhhcCCCCCEEEccCCeeeE--EcCCCCcCc-------------ccccEEecCCCCCCC--CCCcccc
Q 047285 498 EIHFVNLTKLTWFSASGNSLIL--KFNPNWVPP-------------FQLETLQLRSCHLGP--HFPSWLH 550 (552)
Q Consensus 498 ~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~~~~--~iP~~l~ 550 (552)
. .+++|++|++++|++.+ .+|..+..+ .+|+.|++++|++++ .+|++++
T Consensus 354 ~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 354 E----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp C----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred c----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 4 36777888888888777 667776666 678888888888887 7777764
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-37 Score=323.62 Aligned_cols=391 Identities=20% Similarity=0.184 Sum_probs=304.7
Q ss_pred CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 203 (552)
.+...++++++++.++ .+|..+. ++|++|++++|++++..|..+.++++|++|++++|.++.++.. .+..+
T Consensus 29 ~~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-----VFLFN 99 (562)
T ss_dssp ----CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-----TTTTC
T ss_pred ccCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-----HhCCC
Confidence 3445599999999999 5787664 8999999999999988788999999999999999998876433 27889
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCC-CCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP-PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
++|++|++++|.++.. +.. .+++|++|++++|.+.+.. |..+.++++|++|++++|.+.+.... .+..+ +
T Consensus 100 ~~L~~L~Ls~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~L-~ 170 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL---PVAHL-H 170 (562)
T ss_dssp TTCCEEECTTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG---GGTTS-C
T ss_pred CCCCEEECCCCcCCcc---Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh---hhhhc-e
Confidence 9999999999999864 333 7999999999999999854 68899999999999999998864322 33333 4
Q ss_pred ccEEeccCccc--cccCchhhhc--------------------------ccCCcEEeccCCCC-----------------
Q 047285 283 LVFIDLSSNQF--QGQIPIGLRN--------------------------LTSLRHLDLRFNYF----------------- 317 (552)
Q Consensus 283 L~~L~L~~n~~--~~~~~~~l~~--------------------------l~~L~~L~l~~n~l----------------- 317 (552)
|++|++++|.+ ++..|..+.. +++|+.+++++|..
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 49999999988 6666665554 34555566655531
Q ss_pred -----------CCC----CCccCCCCCCCCEEEccCccceeecCcccc----CCCCccCEEeCCCCCCCCCCCc-hhHhh
Q 047285 318 -----------NST----TPGWLSKFNDLEFLSVAWNSLQGTISSVGL----ENLTSIETLDLSGNSKLGGKIP-TSFAR 377 (552)
Q Consensus 318 -----------~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l----~~l~~L~~L~l~~n~~l~~~~~-~~~~~ 377 (552)
.+. .+.. ...++|++|++++|.++|.+|...+ ..++.|+.+++..+. + .+| ..+..
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~--~~p~~~~~~ 326 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV-F--LFSKEALYS 326 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC-C--SSCHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce-e--ecChhhhhh
Confidence 000 0000 1124889999999999988888732 677778888888876 4 555 34443
Q ss_pred c---ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC--CCcccc
Q 047285 378 L---CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG--PLPPAL 452 (552)
Q Consensus 378 l---~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l 452 (552)
+ .+|+.++++......... ...+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVC-------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhccCcceEEEccCCCcccccC-------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 3 557777776554322111 1356799999999999999899999999999999999999986 345678
Q ss_pred cCCCCCCEEeCCCCcCCccCcc-cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccc
Q 047285 453 GELSSLKKLDLSNNMLNGFIPL-SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL 531 (552)
Q Consensus 453 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L 531 (552)
..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|. .+. ++|++|++++|++. .+|..+..+++|
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 9999999999999999986665 478899999999999999876654 222 79999999999998 788878899999
Q ss_pred cEEecCCCCCCCCCCcc
Q 047285 532 ETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 532 ~~L~l~~n~~~~~iP~~ 548 (552)
+.|++++|+++ .+|..
T Consensus 476 ~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 476 QELNVASNQLK-SVPDG 491 (562)
T ss_dssp SEEECCSSCCC-CCCTT
T ss_pred CEEECCCCCCC-CCCHH
Confidence 99999999999 78875
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=305.70 Aligned_cols=331 Identities=20% Similarity=0.176 Sum_probs=206.2
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
+++++|++++|.+++. .+..|..+++|++|+|++|.+++..|..+.++++|++|++++|.++.++..
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG------------ 98 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT------------
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc------------
Confidence 3556666666665542 345555666666666666665555555555666666666665555443321
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 285 (552)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|++
T Consensus 99 -------------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~ 156 (477)
T 2id5_A 99 -------------------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQ 156 (477)
T ss_dssp -------------------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT---SSTTCTTCCE
T ss_pred -------------------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh---hccCCCCCCE
Confidence 234455555555555555555555556666666666666665555444 5556667777
Q ss_pred EeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365 (552)
Q Consensus 286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 365 (552)
|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.. .....+|+.|++++|.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCc
Confidence 777777776555556677777777777777777666666777777777777777766666665 3344577777777776
Q ss_pred CCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc
Q 047285 366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF 445 (552)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 445 (552)
+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 236 -l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 236 -LTAVPYLAVRHLV-----------------------------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp -CCSCCHHHHTTCT-----------------------------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred -ccccCHHHhcCcc-----------------------------ccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 5543334444444 6777777777777666666777777777777777777
Q ss_pred CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC
Q 047285 446 GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN 524 (552)
Q Consensus 446 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 524 (552)
+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++........+. .....+.+.++...+..|..
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGG
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH--hhhhccccCccCceeCCchH
Confidence 666777777777777777777777655556677777777777777776544331121 12223344555555555543
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.9e-35 Score=312.66 Aligned_cols=417 Identities=22% Similarity=0.229 Sum_probs=295.0
Q ss_pred ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS 196 (552)
Q Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 196 (552)
.+|..+. +.+++|||++|.++++ .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.++.++...
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-- 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-- 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence 3454432 4799999999999953 4568999999999999999999777778999999999999999988776543
Q ss_pred ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGS 275 (552)
Q Consensus 197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 275 (552)
|.++++|++|++++|.+++.+ +..++.+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+....
T Consensus 120 ---f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 120 ---FSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ---GTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ---hcCCCCCCEEECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 789999999999999998743 34578999999999999999864 577889999999999999999887766222
Q ss_pred cccCCC-CccEEeccCccccccCchh------------------------hhcccCCcEEeccCCCC------CC-----
Q 047285 276 WVFGLR-NLVFIDLSSNQFQGQIPIG------------------------LRNLTSLRHLDLRFNYF------NS----- 319 (552)
Q Consensus 276 ~~~~l~-~L~~L~L~~n~~~~~~~~~------------------------l~~l~~L~~L~l~~n~l------~~----- 319 (552)
.+..++ ....++++.|.+....+.. +..+..++...+..+.. ..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 222222 2234566666554322211 12222222222111000 00
Q ss_pred ----------------------CCCccCCCCCCCCEEEccCccceeecCccccCC---------------------CCcc
Q 047285 320 ----------------------TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN---------------------LTSI 356 (552)
Q Consensus 320 ----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~---------------------l~~L 356 (552)
..+..+....+++.+.+..+.+.+. .. +.. ++.|
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GG--GGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cc--cccchhhhhhhcccccccCcCcccchhh
Confidence 0011112223444444444443321 11 222 3344
Q ss_pred CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC-cc-------------------ccccccccCCCCCCEEEcc
Q 047285 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF-SQ-------------------VLDTFSSCGAYALESLDLS 416 (552)
Q Consensus 357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~-------------------~~~~~~~~~~~~L~~L~ls 416 (552)
+.+++..|. ... +.....+++|+.++++........ .+ ......+..+++|+.++++
T Consensus 352 ~~l~l~~n~-~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 352 KRLTFTSNK-GGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CEEEEESCC-SCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT
T ss_pred hhccccccc-CCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh
Confidence 455554443 221 223345677777777655433210 00 0011234567788888888
Q ss_pred CCcCcccC-chhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC-ccCcccccCCCCCCeeeCCCcccce
Q 047285 417 ICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN-GFIPLSLGKLSHLEYLDLSNNKLNA 494 (552)
Q Consensus 417 ~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 494 (552)
.+...... +..+..+++++.++++.|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 87765544 346778899999999999999888899999999999999999854 4578889999999999999999988
Q ss_pred ecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285 495 SLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 495 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
..|. .|.++++|++|+|++|++.+..|..+..+++|+.|++++|++++..|+.+.
T Consensus 509 l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 509 LSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp ECTT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred cChH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 7777 899999999999999999988888889999999999999999998888765
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=305.12 Aligned_cols=325 Identities=20% Similarity=0.203 Sum_probs=275.9
Q ss_pred CCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCC
Q 047285 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLE 207 (552)
Q Consensus 128 L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~ 207 (552)
-+.++.+++.++ .+|..+. +++++|++++|++++..|..+.++++|++|++++|.++.+
T Consensus 13 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----------------- 71 (477)
T 2id5_A 13 DRAVLCHRKRFV--AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV----------------- 71 (477)
T ss_dssp TTEEECCSCCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------------
T ss_pred CCEEEeCCCCcC--cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----------------
Confidence 357788888877 5676553 5788888888888876677788888888888887765543
Q ss_pred EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEe
Q 047285 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287 (552)
Q Consensus 208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 287 (552)
.+..+.++++|++|++++|.+.+.++..+.++++|++|++++|.+.+..+. .+..+++|++|+
T Consensus 72 --------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~ 134 (477)
T 2id5_A 72 --------------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY---MFQDLYNLKSLE 134 (477)
T ss_dssp --------------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEE
T ss_pred --------------ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh---HccccccCCEEE
Confidence 234556778888888888888888888899999999999999999888777 788899999999
Q ss_pred ccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCC
Q 047285 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKL 367 (552)
Q Consensus 288 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l 367 (552)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|. .
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~-~ 212 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWP-Y 212 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCT-T
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCc-c
Confidence 999999988888899999999999999999988778889999999999999999865444 48999999999999997 5
Q ss_pred CCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCC
Q 047285 368 GGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP 447 (552)
Q Consensus 368 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 447 (552)
.+.++...... .+|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 213 ~~~~~~~~~~~-----------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 213 LDTMTPNCLYG-----------------------------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CCEECTTTTTT-----------------------------CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred ccccCcccccC-----------------------------ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 55555433222 2799999999999976667899999999999999999988
Q ss_pred CcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 448 LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 448 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
.+..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++ ++...+..+++|++|++++|++.+.++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCccCccc
Confidence 88889999999999999999998889999999999999999999966 444478899999999999999997754
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-35 Score=298.89 Aligned_cols=358 Identities=22% Similarity=0.185 Sum_probs=271.7
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCC-------------CEEeccCCCCCC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL-------------QYLDLSGTFLSN 189 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L-------------~~L~l~~n~l~~ 189 (552)
.+.++|++|++++|.+ + .+|+.++++++|++|++++|++.+.+|..++++++| ++|++++|.++.
T Consensus 8 ~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3568999999999999 4 699999999999999999999999999999998875 999999998887
Q ss_pred CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC
Q 047285 190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS 269 (552)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 269 (552)
+|. ..++|++|++++|.+++.+. .+++|++|++++|.+.+.+.. .++|++|++++|.+++
T Consensus 86 lp~---------~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 86 LPE---------LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp CCS---------CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-
T ss_pred CCC---------CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-
Confidence 653 13689999999999987542 248999999999999875432 2799999999999987
Q ss_pred CccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc
Q 047285 270 LFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349 (552)
Q Consensus 270 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 349 (552)
+| .+..+++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .+.++++|++|++++|.+++ +|..
T Consensus 146 lp----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 146 LP----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp CC----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred Cc----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 44 47889999999999999985 5643 3699999999999987 45 58999999999999999984 5543
Q ss_pred cCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhc
Q 047285 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL 429 (552)
Q Consensus 350 l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~ 429 (552)
.++|++|++++|. ++ .+|. ++.+++|+.++++...... .+. ..++|++|++++|.+++ +|..
T Consensus 214 ---~~~L~~L~l~~n~-l~-~lp~-~~~l~~L~~L~l~~N~l~~--l~~-------~~~~L~~L~l~~N~l~~-l~~~-- 275 (454)
T 1jl5_A 214 ---PLSLESIVAGNNI-LE-ELPE-LQNLPFLTTIYADNNLLKT--LPD-------LPPSLEALNVRDNYLTD-LPEL-- 275 (454)
T ss_dssp ---CTTCCEEECCSSC-CS-SCCC-CTTCTTCCEEECCSSCCSS--CCS-------CCTTCCEEECCSSCCSC-CCCC--
T ss_pred ---cCcccEEECcCCc-CC-cccc-cCCCCCCCEEECCCCcCCc--ccc-------cccccCEEECCCCcccc-cCcc--
Confidence 3689999999997 76 6774 8899999999888655432 211 12589999999999987 4443
Q ss_pred CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCE
Q 047285 430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW 509 (552)
Q Consensus 430 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 509 (552)
+++|+.|++++|++++ +|.. .++|++|++++|.+++ ++. ..++|++|++++|++++ +|. .+++|++
T Consensus 276 -~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~ 341 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPA----LPPRLER 341 (454)
T ss_dssp -CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred -cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-ccc----cCCcCCE
Confidence 4899999999999985 2221 2689999999999985 332 12589999999999976 665 2689999
Q ss_pred EEccCCeeeEEcCCCCcCcccccEEecCCCCCCC--CCCcccc
Q 047285 510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP--HFPSWLH 550 (552)
Q Consensus 510 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~iP~~l~ 550 (552)
|++++|++. .+|. .+.+|+.|++++|++++ .+|.+++
T Consensus 342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 999999998 4665 46799999999999999 8998875
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.8e-34 Score=292.37 Aligned_cols=351 Identities=17% Similarity=0.165 Sum_probs=233.7
Q ss_pred CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285 82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA 161 (552)
Q Consensus 82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~ 161 (552)
.+++.|++++. .+.+. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n--------------------~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 42 ATLTSLDCHNS--------------------SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSN 95 (457)
T ss_dssp TTCCEEECCSS--------------------CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSS
T ss_pred CCCCEEEccCC--------------------CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCC
Confidence 46889999883 56553 4 68999999999999999996 44 889999999999999
Q ss_pred cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241 (552)
Q Consensus 162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (552)
++++. | ++++++|++|++++|.++.++ +..+++|++|++++|.+++. .+..+++|++|++++|.
T Consensus 96 ~l~~~-~--~~~l~~L~~L~L~~N~l~~l~--------~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 96 KLTNL-D--VTPLTKLTYLNCDTNKLTKLD--------VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CCSCC-C--CTTCTTCCEEECCSSCCSCCC--------CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCS
T ss_pred CCcee-e--cCCCCcCCEEECCCCcCCeec--------CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCC
Confidence 99864 4 899999999999999887753 77899999999999999874 26789999999999996
Q ss_pred CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC
Q 047285 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT 321 (552)
Q Consensus 242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 321 (552)
..+.. .+..+++|+.|++++|.+++. .+..+++|+.|++++|.+++. .++.+++|++|++++|++++ +
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITEL------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCCC------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C
T ss_pred ccccc--ccccCCcCCEEECCCCcccee------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c
Confidence 55554 477889999999999998873 256789999999999999864 37889999999999999998 4
Q ss_pred CccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe----------CCCCCCCCCCCchhHhhcccCceeecccccC
Q 047285 322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD----------LSGNSKLGGKIPTSFARLCKLTSVDLSLIDL 391 (552)
Q Consensus 322 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~----------l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~ 391 (552)
| +..+++|++|++++|++++. + ...+++|+.|+ +++|. +.+.+| ++.+++|+.++++.+..
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~-~---~~~l~~L~~L~l~~n~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTEL-D---VSTLSKLTTLHCIQTDLLEIDLTHNT-QLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred C--ccccCCCCEEEeeCCcCCCc-C---HHHCCCCCEEeccCCCCCEEECCCCc-cCCccc--ccccccCCEEECCCCcc
Confidence 5 78899999999999999864 3 33445555544 44444 334444 23445555555443321
Q ss_pred CCC---CccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285 392 SQD---FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML 468 (552)
Q Consensus 392 ~~~---~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 468 (552)
... ....+....+.++++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.+
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF 367 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred cceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence 110 00011111222333444444444444432 13344444444444444432 12333333444444
Q ss_pred CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS 511 (552)
Q Consensus 469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 511 (552)
.|. ..+..|+.+++++|+++|.+|...+....++....
T Consensus 368 ~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~ 405 (457)
T 3bz5_A 368 EAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405 (457)
T ss_dssp EEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred Eec-----ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence 332 12334555566666666666553333333443333
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-34 Score=291.38 Aligned_cols=313 Identities=20% Similarity=0.246 Sum_probs=197.3
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcc-cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKY-LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
..++++++|+++++.+. .+|.. +..+++|++|++++|++++..|..++++++|++|++++|.++.++... +.
T Consensus 42 ~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQ 114 (390)
T ss_dssp GGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TT
T ss_pred cccCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-----hc
Confidence 45789999999999988 45654 688999999999999998777778999999999999999887654322 56
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.+++|++|++++|.+...+ ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 115 ~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------------
T ss_pred CCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------------
Confidence 6677777777777666421 12235566666666666666655555555555555555555544432
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
.+..+++|++|++++|.+++. ...++|++|++++|.+.. ++.. ..++|+.|++
T Consensus 181 ------------------~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l 233 (390)
T 3o6n_A 181 ------------------DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKL 233 (390)
T ss_dssp ------------------CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEEC
T ss_pred ------------------ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccccEEEC
Confidence 123344455555555444321 122355556666555542 2221 2356666666
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
++|. +++. ..+..+ ++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 234 ~~n~-l~~~--~~l~~l-----------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 234 QHNN-LTDT--AWLLNY-----------------------------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSC-CCCC--GGGGGC-----------------------------TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCCC-Cccc--HHHcCC-----------------------------CCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 6665 4432 223222 2666777777776666666666677777777777
Q ss_pred CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521 (552)
Q Consensus 442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 521 (552)
|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ ++ +..+++|++|++++|++.+..
T Consensus 282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC---chhhccCCEEEcCCCCccchh
Confidence 76663 4555566677777777777666 455556666777777777777643 22 455667777777777766543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-33 Score=277.56 Aligned_cols=307 Identities=25% Similarity=0.333 Sum_probs=185.9
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+..+++|++|+++++.+.. ++. ++.+++|++|++++|++++ +|. +.++++|++|++++|.++.++ .+.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-------~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-------ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-------GGT
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-------HHc
Confidence 5678999999999999984 554 8889999999999999985 444 899999999999999877643 377
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.+++|++|++++|.+...+. +..+++|++|++++|.....++. +..+++|+.|++++|.+.+..+ +..++
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-----~~~l~ 177 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-----IANLT 177 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred CCCcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-----hccCC
Confidence 88888888888888876432 56777888888887754443332 4555555555555555443221 33444
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
+|++|++++|.+. +..+ +..+++|+.+++++|.+.+..+ +..+++|++|++
T Consensus 178 ~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l 228 (347)
T 4fmz_A 178 DLYSLSLNYNQIE------------------------DISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKI 228 (347)
T ss_dssp TCSEEECTTSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEEC
T ss_pred CCCEEEccCCccc------------------------cccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEc
Confidence 4555555555444 3222 3444455555555554442211 344555555555
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
++|. +++..+ +..+ ++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 229 ~~n~-l~~~~~--~~~l-----------------------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 229 GNNK-ITDLSP--LANL-----------------------------SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGS 274 (347)
T ss_dssp CSSC-CCCCGG--GTTC-----------------------------TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cCCc-cCCCcc--hhcC-----------------------------CCCCEEECCCCccCCC--hhHhcCCCcCEEEccC
Confidence 5554 332211 2222 2555555555555542 2455556666666666
Q ss_pred CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518 (552)
Q Consensus 442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 518 (552)
|++++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 665532 235556666666666666665555556666666666666666654333 455666666666666653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.5e-34 Score=301.22 Aligned_cols=311 Identities=22% Similarity=0.252 Sum_probs=186.1
Q ss_pred CCCCCCEEeCCCCcCCCCccC-cccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285 124 DLKHLIHLDLSGNDFEGIQIP-KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202 (552)
Q Consensus 124 ~l~~L~~L~Ls~n~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 202 (552)
.+++++.|++++|.+.. +| ..++.+++|++|++++|.+++..|..++++++|++|++++|.++.++... +..
T Consensus 49 ~l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTT
T ss_pred cCCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-----HcC
Confidence 46788999999988884 44 44678899999999999988777778889999999999988877655332 566
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN 282 (552)
Q Consensus 203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 282 (552)
+++|++|++++|.+...+ +..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+++.. +..+++
T Consensus 122 l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~ 193 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPS 193 (597)
T ss_dssp CTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTT
T ss_pred CCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC------hhhhhh
Confidence 777777777777766532 223466777777777777777776666666667777777666665532 234556
Q ss_pred ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285 283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362 (552)
Q Consensus 283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~ 362 (552)
|+.|++++|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. .. +..+++|+.|+++
T Consensus 194 L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls 262 (597)
T 3oja_B 194 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLS 262 (597)
T ss_dssp CSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECC
T ss_pred hhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hh-hccCCCCCEEECC
Confidence 6666666665543 223345666666666554332211 13555555555555531 11 4455555555555
Q ss_pred CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285 363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442 (552)
Q Consensus 363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n 442 (552)
+|. +.+..|..+..++ +|++|++++|.+++ +|..+..+++|+.|+|++|
T Consensus 263 ~N~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 263 YNE-LEKIMYHPFVKMQ-----------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp SSC-CCEEESGGGTTCS-----------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCc-cCCCCHHHhcCcc-----------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 554 4444444444333 45555555555543 2333444555555555555
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee
Q 047285 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS 495 (552)
Q Consensus 443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 495 (552)
.++ .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 555 4444455555555555555555432 1 33445555555555555443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-32 Score=271.56 Aligned_cols=307 Identities=26% Similarity=0.365 Sum_probs=234.2
Q ss_pred cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285 147 LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226 (552)
Q Consensus 147 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 226 (552)
+..+++|++|+++++.+.. +| .+..+++|++|++++|.++.++. +..+++|++|++++|.+...+ .+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~~----~~ 106 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDIS----AL 106 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG----GG
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCch----HH
Confidence 4467888888888888873 44 37778888888888887665432 566667777777777665531 34
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306 (552)
Q Consensus 227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 306 (552)
..+++|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-----------------------------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~ 156 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-----------------------------LANLTKMYSLNLGANHNLSDLS-PLSNMTG 156 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-----------------------------GTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred cCCCcCCEEECcCCcccCchh-----------------------------hccCCceeEEECCCCCCccccc-chhhCCC
Confidence 555666666666555543322 4456667777777775544433 3777888
Q ss_pred CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeec
Q 047285 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL 386 (552)
Q Consensus 307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l 386 (552)
|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+.+++++|. +.+..+ +..+
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~~-------- 220 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP--LASLTSLHYFTAYVNQ-ITDITP--VANM-------- 220 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG--GGGCTTCCEEECCSSC-CCCCGG--GGGC--------
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc--ccCCCccceeecccCC-CCCCch--hhcC--------
Confidence 8888888888776544 7788999999999999874 333 6788999999999997 654333 3333
Q ss_pred ccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCC
Q 047285 387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466 (552)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 466 (552)
++|++|++++|.+++..+ +..+++|++|++++|++++ + ..+..+++|++|++++|
T Consensus 221 ---------------------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 221 ---------------------TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp ---------------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred ---------------------CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence 389999999999987554 8899999999999999985 3 56899999999999999
Q ss_pred cCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285 467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
.+++. ..+..+++|++|++++|++++..+. .+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99853 4578899999999999999877776 79999999999999999997766 778899999999999986
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-32 Score=277.12 Aligned_cols=311 Identities=21% Similarity=0.233 Sum_probs=243.0
Q ss_pred CCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCC
Q 047285 149 SLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNS 228 (552)
Q Consensus 149 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 228 (552)
.++++++|+++++.+....+..+.++++|++|++++|.++.++. ..+..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-------------------------------~~~~~ 91 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-------------------------------YAFAY 91 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-------------------------------TTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-------------------------------hhccC
Confidence 36789999999999885433446888999999999887765432 12344
Q ss_pred CCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCc
Q 047285 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLR 308 (552)
Q Consensus 229 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 308 (552)
+++|++|++++|.+.+.++..+.++++|++|++++|.++...+. .+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 55555555555555555566666666666666666666643333 456778888888888888877777788899999
Q ss_pred EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccc
Q 047285 309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL 388 (552)
Q Consensus 309 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~ 388 (552)
+|++++|.+++.. +..+++|+.+++++|.+++ +...++|+.|++++|. +... |..
T Consensus 169 ~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~-l~~~-~~~-------------- 223 (390)
T 3o6n_A 169 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNS-INVV-RGP-------------- 223 (390)
T ss_dssp EEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSC-CCEE-ECC--------------
T ss_pred EEECCCCcCCccc---cccccccceeecccccccc------cCCCCcceEEECCCCe-eeec-ccc--------------
Confidence 9999999988653 5567899999999998874 3344689999999997 5422 210
Q ss_pred ccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285 389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML 468 (552)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 468 (552)
..++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 224 -----------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 224 -----------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp -----------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred -----------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 123799999999999864 5788999999999999999988899999999999999999999
Q ss_pred CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
++ +|..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++... + +..+++|+.|++++|++.+
T Consensus 285 ~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 285 VA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cc-cCcccCCCCCCCEEECCCCcce-ecCc-cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 84 6777788999999999999996 5665 578899999999999999754 2 6677899999999999874
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=268.80 Aligned_cols=253 Identities=23% Similarity=0.337 Sum_probs=195.6
Q ss_pred CCCceeecCCCCCCC--CCccccccccCCCCccEEeccC-ccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC
Q 047285 254 SSLKALHLAINNFDN--SLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND 330 (552)
Q Consensus 254 ~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 330 (552)
.+++.|++++|.+.+ .++. .+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~---~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS---SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG---GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccCh---hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 345566666666665 4554 566667777777773 6666667777777777777777777777677777777777
Q ss_pred CCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285 331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410 (552)
Q Consensus 331 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L 410 (552)
|++|++++|.+++.+|.. +..+++|++|++++|. +++.+|..+..++ +.|
T Consensus 127 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~----------------------------~~L 176 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYGSFS----------------------------KLF 176 (313)
T ss_dssp CCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGGCCC----------------------------TTC
T ss_pred CCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHHHhhhh----------------------------hcC
Confidence 777777777777666665 6777777777777776 6666666665543 168
Q ss_pred CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCc
Q 047285 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490 (552)
Q Consensus 411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 490 (552)
++|++++|.+++.+|..+..++ |+.|++++|++++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 8888888888888888888887 89999999988888888888889999999999988866665 677889999999999
Q ss_pred ccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC-CCC
Q 047285 491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH-LGP 543 (552)
Q Consensus 491 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~ 543 (552)
++++.+|. .+..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 255 ~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 255 RIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 99888888 7888999999999999999888865 778889999999997 665
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-32 Score=286.06 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=257.1
Q ss_pred CCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCC
Q 047285 150 LENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL 229 (552)
Q Consensus 150 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 229 (552)
+.+++.+++++|.+....+..+.++++|++|++++|.++.++.. .+..+++|++|++++|.+.+. .+..+..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYL--PPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCC--CHHHHcCC
Confidence 67899999999999865555678999999999999988776532 378899999999999998873 34567889
Q ss_pred CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcE
Q 047285 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309 (552)
Q Consensus 230 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 309 (552)
++|++|++++|.+.+.++..+.++++|+.|++++|.+.+..+. .+..+++|++|++++|.+++. .+..+++|+.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECTTSCCSBC---CGGGCTTCSE
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh---hhhcCCcCcEEECcCCCCCCc---Chhhhhhhhh
Confidence 9999999999999988888889999999999999999888777 778889999999999988864 2566788999
Q ss_pred EeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccc
Q 047285 310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLI 389 (552)
Q Consensus 310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~ 389 (552)
|++++|.+++. ...++|+.|++++|.+.. ++.. ..++|+.|++++|. +++ +..+..+
T Consensus 197 L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~-l~~--~~~l~~l----------- 253 (597)
T 3oja_B 197 ANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNN-LTD--TAWLLNY----------- 253 (597)
T ss_dssp EECCSSCCSEE-----ECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCSSC-CCC--CGGGGGC-----------
T ss_pred hhcccCccccc-----cCCchhheeeccCCcccc-cccc---cCCCCCEEECCCCC-CCC--ChhhccC-----------
Confidence 99999887653 344688999999998874 3332 23688999999987 654 2334433
Q ss_pred cCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 390 DLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
++|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++
T Consensus 254 ------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 254 ------------------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp ------------------TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ------------------CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 389999999999999889999999999999999999985 6777788999999999999998
Q ss_pred ccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521 (552)
Q Consensus 470 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 521 (552)
.+|..+..+++|++|++++|++++. + +..+++|+.|++++|++.+..
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEEHHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCCChh
Confidence 6888888899999999999998653 3 567889999999999988664
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.3e-33 Score=272.02 Aligned_cols=275 Identities=18% Similarity=0.216 Sum_probs=199.6
Q ss_pred CCCcHHHHHHHHHhHhcC-CCCCCCCCCCC---CCCCCCcccCceEecC--------CCCcEEEEEcCCCCccCCCCchh
Q 047285 35 VGCIDSEREALLKLKQDL-IDPSNRLASWN---TGDGDCCKWAGVFCSN--------ITGHVLQLSLQNPFSYLGGDLRE 102 (552)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~W~---~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~l~~ 102 (552)
..+..+|++||++||+++ .++.++..+|. ....++|.|.|+.|+. ...+|+.|++++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 457788999999999988 46667778894 3357899999999952 3478999999883
Q ss_pred hcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEec
Q 047285 103 VKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDL 182 (552)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 182 (552)
.+. .+|+.++++++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..++++++|++|++
T Consensus 92 ----------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 92 ----------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp ----------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ----------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 555 77888999999999999999998 58999999999999999999998 78999999999999999
Q ss_pred cCCC-CCCCccccCC---ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCce
Q 047285 183 SGTF-LSNYDLHVDS---LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKA 258 (552)
Q Consensus 183 ~~n~-l~~~~~~~~~---~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 258 (552)
++|. ++.+|..... ...+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+.++ .+..+++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~ 233 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEE 233 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCE
Confidence 9864 4444432110 0113447777777777777764 34456667777777777777765433 4666666666
Q ss_pred eecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285 259 LHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338 (552)
Q Consensus 259 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 338 (552)
|++++|.+.+.++. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..
T Consensus 234 L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 234 LDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EECcCCcchhhhHH---HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 66666666666655 556666666666666666666666666666666666666666666666666666666666554
Q ss_pred cc
Q 047285 339 NS 340 (552)
Q Consensus 339 n~ 340 (552)
+.
T Consensus 311 ~~ 312 (328)
T 4fcg_A 311 HL 312 (328)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4.2e-35 Score=302.67 Aligned_cols=386 Identities=20% Similarity=0.142 Sum_probs=259.6
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCC----CCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG----MIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
++|++|+++++.++.......+..+++|++|++++|++++ .++..+..+++|++|++++|.++..... ....
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~----~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH----CVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH----HHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH----HHHH
Confidence 5678888888888754334446778888888888888764 3466677888888888888876542110 0012
Q ss_pred CCC----CCCEEeCCCCcCCCC--cchhhhcCCCCCCCEEEcCCCCCCCCCCCcc-----cCCCCCceeecCCCCCCCCC
Q 047285 202 GLY----MLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS-----ANFSSLKALHLAINNFDNSL 270 (552)
Q Consensus 202 ~l~----~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~ 270 (552)
.++ +|++|++++|.+... ..++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 233 688888888887753 2456777888899999999888765433222 23457899999988887643
Q ss_pred cc-ccccccCCCCccEEeccCccccccCchhhhc-----ccCCcEEeccCCCCCCC----CCccCCCCCCCCEEEccCcc
Q 047285 271 FQ-YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN-----LTSLRHLDLRFNYFNST----TPGWLSKFNDLEFLSVAWNS 340 (552)
Q Consensus 271 ~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~ 340 (552)
.. ....+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 21 1124566789999999999887654444432 56899999999988764 35666778899999999998
Q ss_pred ceeec----CccccCCCCccCEEeCCCCCCCCCC----CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCE
Q 047285 341 LQGTI----SSVGLENLTSIETLDLSGNSKLGGK----IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALES 412 (552)
Q Consensus 341 l~~~~----~~~~l~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 412 (552)
+.+.. ....+..+++|+.|++++|. +++. ++..+..++ +|++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~-----------------------------~L~~ 288 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKE-----------------------------SLKE 288 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCT-----------------------------TCCE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCC-----------------------------Ccce
Confidence 76432 12223467899999999997 6643 344444444 6777
Q ss_pred EEccCCcCcccCchhhcC-----CCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCcccccC-----
Q 047285 413 LDLSICQISGHLTNQLLQ-----FKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLGK----- 478 (552)
Q Consensus 413 L~ls~n~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----- 478 (552)
|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence 888887776544443332 25788888888877754 4555666778888888888776544433321
Q ss_pred CCCCCeeeCCCcccce----ecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc-----CcccccEEecCCCCCCCCCC
Q 047285 479 LSHLEYLDLSNNKLNA----SLSEIHFVNLTKLTWFSASGNSLILKFNPNWV-----PPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 479 l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~iP 546 (552)
.++|++|++++|++++ .++. .+..+++|++|++++|++.+.....+. ...+|+.|++.++.+....+
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 5678888888888765 5666 577788888888888877644111111 12357777777766654333
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.7e-30 Score=253.49 Aligned_cols=288 Identities=20% Similarity=0.213 Sum_probs=176.2
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML 206 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L 206 (552)
++++++++++.++ .+|..+. ++|++|++++|++.+..|..+.++++|++|++++|.++.++.. .+..+++|
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----GSTTCTTC
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----HhhCcCCC
Confidence 6899999999888 5777664 6899999999999876677889999999999999887765322 26777888
Q ss_pred CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCC--CCccccccccCCCCcc
Q 047285 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN--SLFQYGSWVFGLRNLV 284 (552)
Q Consensus 207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~L~ 284 (552)
++|++++|.+...+ ..+. ++|++|++++|.+.+.++..+..+++|+.|++++|.++. ..+. .+..+ +|+
T Consensus 105 ~~L~L~~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~ 175 (332)
T 2ft3_A 105 QKLYISKNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLN 175 (332)
T ss_dssp CEEECCSSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCS
T ss_pred CEEECCCCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccC
Confidence 88888888776532 2222 677777777777776666666666666666666666542 2222 33333 555
Q ss_pred EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+|++++|.+++ +|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~-------------------------l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED-------------------------LLRYSKLYRLGLGHN 227 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS-------------------------STTCTTCSCCBCCSS
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH-------------------------hcCCCCCCEEECCCC
Confidence 55555555543 333222 44555555555544444444 444555555555555
Q ss_pred CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 444 (552)
. +++..+..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|++
T Consensus 228 ~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 228 Q-IRMIENGSLSFLP-----------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp C-CCCCCTTGGGGCT-----------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred c-CCcCChhHhhCCC-----------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 4 4443333333333 4555555555555 4455555666666666666666
Q ss_pred cCCCcccccC------CCCCCEEeCCCCcCC--ccCcccccCCCCCCeeeCCCcc
Q 047285 445 FGPLPPALGE------LSSLKKLDLSNNMLN--GFIPLSLGKLSHLEYLDLSNNK 491 (552)
Q Consensus 445 ~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 491 (552)
++..+..+.. .++|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5444444433 355677777777765 4455666777777777777664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-29 Score=247.51 Aligned_cols=290 Identities=21% Similarity=0.229 Sum_probs=146.0
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML 206 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L 206 (552)
++++++++++.++ .+|..+. ++|++|++++|++++..+..++++++|++|++++|.++.+... .+..+++|
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-----AFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-----TTTTCTTC
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-----HhcCCCCC
Confidence 6788888888877 4676553 6788888888888866566778888888888887776654211 14445555
Q ss_pred CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286 (552)
Q Consensus 207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L 286 (552)
++|++++|.++..+ ..+ .++|++|++++|.+.+..+. .+..+++|++|
T Consensus 103 ~~L~Ls~n~l~~l~---~~~--~~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L 150 (330)
T 1xku_A 103 ERLYLSKNQLKELP---EKM--PKTLQELRVHENEITKVRKS---------------------------VFNGLNQMIVV 150 (330)
T ss_dssp CEEECCSSCCSBCC---SSC--CTTCCEEECCSSCCCBBCHH---------------------------HHTTCTTCCEE
T ss_pred CEEECCCCcCCccC---hhh--cccccEEECCCCcccccCHh---------------------------HhcCCccccEE
Confidence 55555555443311 110 12333333333333322222 23333444444
Q ss_pred eccCccccc--cCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 287 DLSSNQFQG--QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 287 ~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
++++|.+.. ..+..+..+++|++|++++|.++. +|.. + .++|++|++++|
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------l~~~-~--~~~L~~L~l~~n 202 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------------------IPQG-L--PPSLTELHLDGN 202 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------------------------CCSS-C--CTTCSEEECTTS
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------------------------CCcc-c--cccCCEEECCCC
Confidence 444443321 223334444444444444444432 2222 1 144455555555
Q ss_pred CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 444 (552)
. +++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 203 ~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 203 K-ITKVDAASLKGLN-----------------------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp C-CCEECTGGGTTCT-----------------------------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred c-CCccCHHHhcCCC-----------------------------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 4 4433333333332 455555555555544444555555555555555555
Q ss_pred cCCCcccccCCCCCCEEeCCCCcCCccCcccccC------CCCCCeeeCCCcccce-ecCHHhhhcCCCCCEEEccCCe
Q 047285 445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK------LSHLEYLDLSNNKLNA-SLSEIHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~ 516 (552)
+ .+|..+..+++|++|++++|++++..+..+.. .+.++.+++++|++.. .++...+..++.++.+++++|+
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5 45555555555555555555555433333321 2556666666666532 2222256666666666666653
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-29 Score=247.87 Aligned_cols=225 Identities=20% Similarity=0.242 Sum_probs=160.4
Q ss_pred ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee--ecCccccCCCC
Q 047285 277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG--TISSVGLENLT 354 (552)
Q Consensus 277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l~ 354 (552)
+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+. .+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~ 171 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMK 171 (330)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCT
T ss_pred hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCC
Confidence 333444444444444443 2232222 455555555555555444455555666666666665542 2333 377888
Q ss_pred ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCC
Q 047285 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL 434 (552)
Q Consensus 355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L 434 (552)
+|+.|++++|. ++. +|..+ .++|++|++++|.+++..+..+..+++|
T Consensus 172 ~L~~L~l~~n~-l~~-l~~~~-------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 172 KLSYIRIADTN-ITT-IPQGL-------------------------------PPSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp TCCEEECCSSC-CCS-CCSSC-------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred CcCEEECCCCc-ccc-CCccc-------------------------------cccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 99999999997 542 33211 1379999999999999889999999999
Q ss_pred cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhc------CCCCC
Q 047285 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN------LTKLT 508 (552)
Q Consensus 435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------l~~L~ 508 (552)
++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+. .+.. .+.++
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~-~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYS 296 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT-SSSCSSCCTTSCCCS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh-hcCCccccccccccc
Confidence 99999999999877778999999999999999998 7898999999999999999999664443 4533 47899
Q ss_pred EEEccCCeeeE--EcCCCCcCcccccEEecCCCC
Q 047285 509 WFSASGNSLIL--KFNPNWVPPFQLETLQLRSCH 540 (552)
Q Consensus 509 ~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~n~ 540 (552)
.+++++|++.. ..|..+..+.+++.+++++|+
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999863 345667778899999999985
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=248.44 Aligned_cols=289 Identities=19% Similarity=0.198 Sum_probs=208.1
Q ss_pred CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCC
Q 047285 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS 231 (552)
Q Consensus 152 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 231 (552)
+|++++++++.++ .+|..+. ++|++|++++|.++.++ +..+..+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~-------------------------------~~~~~~l~~ 79 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELR-------------------------------KDDFKGLQH 79 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEEC-------------------------------TTTTTTCTT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccC-------------------------------HhHhhCCCC
Confidence 5677777777765 4555442 56666666666555432 223344555
Q ss_pred CCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEe
Q 047285 232 LKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLD 311 (552)
Q Consensus 232 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 311 (552)
|++|++++|.+.+..+..+.++++|++|++++|.++.. +. .+. ++|++|++++|.+.+..+..+..+++|++|+
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~---~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PP---NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CS---SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Cc---ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 55555555555555555555566666666666655522 22 222 6788888888887765566678888888888
Q ss_pred ccCCCCCC--CCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccc
Q 047285 312 LRFNYFNS--TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLI 389 (552)
Q Consensus 312 l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~ 389 (552)
+++|.++. ..+..+..+ +|++|++++|.+++ +|.. +. ++|++|++++|. +++..+..+..++
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~-~~--~~L~~L~l~~n~-i~~~~~~~l~~l~---------- 217 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD-LP--ETLNELHLDHNK-IQAIELEDLLRYS---------- 217 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS-SC--SSCSCCBCCSSC-CCCCCTTSSTTCT----------
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc-cc--CCCCEEECCCCc-CCccCHHHhcCCC----------
Confidence 88888753 566677777 88899999988874 5554 32 789999999998 7766655555554
Q ss_pred cCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 390 DLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
+|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 218 -------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 218 -------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp -------------------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 8999999999999888888999999999999999998 88888999999999999999998
Q ss_pred ccCcccccC------CCCCCeeeCCCcccce-ecCHHhhhcCCCCCEEEccCCe
Q 047285 470 GFIPLSLGK------LSHLEYLDLSNNKLNA-SLSEIHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 470 ~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~ 516 (552)
+..+..+.. .++|+.|++++|++.. .++...+..+++|+.+++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 665555544 4679999999999862 3444478999999999999885
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-33 Score=290.90 Aligned_cols=389 Identities=21% Similarity=0.150 Sum_probs=286.3
Q ss_pred cEEEEEcCCCCccCCCCchhhcccCccccCccccccC-ccccCCCCCCEEeCCCCcCCCC---ccCcccCCCCCCCEEeC
Q 047285 83 HVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVN-PSLVDLKHLIHLDLSGNDFEGI---QIPKYLGSLENLRYLNL 158 (552)
Q Consensus 83 ~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~L 158 (552)
+++.|++++. .++.... ..+..+++|++|++++|.+.+. .++..+..+++|++|++
T Consensus 4 ~l~~L~Ls~~--------------------~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L 63 (461)
T 1z7x_W 4 DIQSLDIQCE--------------------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63 (461)
T ss_dssp EEEEEEEESC--------------------CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred cceehhhhhc--------------------ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC
Confidence 5788888763 4444332 3377899999999999998742 25677888999999999
Q ss_pred CCCcCCCCCcccc-CCCC----CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCC--cchhhh-cCCCC
Q 047285 159 SGAKFAGMIPLQL-GNLS----NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA--SDWLLV-TNSLP 230 (552)
Q Consensus 159 ~~~~~~~~lp~~l-~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~--~~~~~~-~~~~~ 230 (552)
++|.+.+..+..+ ..++ +|++|++++|.++..... .-...+..+++|++|++++|.+... ..+... ....+
T Consensus 64 s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 9999876444333 3344 799999999987642200 0012478899999999999997652 112222 33467
Q ss_pred CCCEEEcCCCCCCCCC----CCcccCCCCCceeecCCCCCCCCCcccccccc-----CCCCccEEeccCcccccc----C
Q 047285 231 SLKVLKLTKCQLCHFP----PLLSANFSSLKALHLAINNFDNSLFQYGSWVF-----GLRNLVFIDLSSNQFQGQ----I 297 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~ 297 (552)
+|++|++++|.+++.. +..+..+++|+.|++++|.+.+.... .+. ..++|++|++++|.+++. +
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR---VLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH---HHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH---HHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 8999999999988754 45566789999999999998765433 222 356999999999999864 5
Q ss_pred chhhhcccCCcEEeccCCCCCCCC-----CccCCCCCCCCEEEccCccceee----cCccccCCCCccCEEeCCCCCCCC
Q 047285 298 PIGLRNLTSLRHLDLRFNYFNSTT-----PGWLSKFNDLEFLSVAWNSLQGT----ISSVGLENLTSIETLDLSGNSKLG 368 (552)
Q Consensus 298 ~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~~l~~l~~L~~L~l~~n~~l~ 368 (552)
+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++.. +..+++|++|++++|. ++
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~ 297 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNE-LG 297 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCC-CH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCC-Cc
Confidence 777888999999999999987543 23344689999999999998853 4444 6678999999999997 76
Q ss_pred CCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcc
Q 047285 369 GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 369 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l 444 (552)
+..+..+...- ....++|++|++++|.+++. ++..+..+++|++|++++|++
T Consensus 298 ~~~~~~l~~~l------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 298 DEGARLLCETL------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHHHHHHHHH------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred hHHHHHHHHHh------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 55555554431 01123799999999998865 456677789999999999998
Q ss_pred cCCCcccccC-----CCCCCEEeCCCCcCCc----cCcccccCCCCCCeeeCCCcccceecCHHh---h-hcCCCCCEEE
Q 047285 445 FGPLPPALGE-----LSSLKKLDLSNNMLNG----FIPLSLGKLSHLEYLDLSNNKLNASLSEIH---F-VNLTKLTWFS 511 (552)
Q Consensus 445 ~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~-~~l~~L~~L~ 511 (552)
++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++.-.... + ....+|+.|+
T Consensus 354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence 8654444432 6799999999999986 678888889999999999999876422211 1 1245788888
Q ss_pred ccCCeeeEEc
Q 047285 512 ASGNSLILKF 521 (552)
Q Consensus 512 L~~n~~~~~~ 521 (552)
+.++.+....
T Consensus 434 ~~~~~~~~~~ 443 (461)
T 1z7x_W 434 LYDIYWSEEM 443 (461)
T ss_dssp CTTCCCCHHH
T ss_pred ecccccCHHH
Confidence 8887766443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.8e-33 Score=295.99 Aligned_cols=386 Identities=14% Similarity=0.092 Sum_probs=186.8
Q ss_pred CCCCCCEEeCCCCcCCCCccCcccCC-CCC-CCEEeCCCCc-CCC-CCccccCCCCCCCEEeccCCCCCCCccccCCcc-
Q 047285 124 DLKHLIHLDLSGNDFEGIQIPKYLGS-LEN-LRYLNLSGAK-FAG-MIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS- 198 (552)
Q Consensus 124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~-l~~-L~~L~L~~~~-~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~- 198 (552)
.+++|++|+|++|.+++ ..+..++. +++ |++|++++|. ++. .++....++++|++|++++|.+++.... .++
T Consensus 110 ~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK--WLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH--HHHH
T ss_pred hCCCCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh--HHHH
Confidence 56666666666665554 23333433 233 6666666664 110 1222233566666666666654332100 011
Q ss_pred ccCCCCCCCEEeCCCCcCCCC--cchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccc
Q 047285 199 WLSGLYMLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSW 276 (552)
Q Consensus 199 ~l~~l~~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 276 (552)
.+..+++|++|++++|.+.+. ..++..+.++++|++|++++|.+.+ .+..+..+++|+.|+++..............
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 123456666666666666522 2344444556666666666666554 2345556666666666543222111111124
Q ss_pred ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285 277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355 (552)
Q Consensus 277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 355 (552)
+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.........+++
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 55566666666666432 2455556666667777776666543322 224566666666666 33322221221345566
Q ss_pred cCEEeCCC----------CCCCCCC-CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEcc----CCcC
Q 047285 356 IETLDLSG----------NSKLGGK-IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS----ICQI 420 (552)
Q Consensus 356 L~~L~l~~----------n~~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls----~n~~ 420 (552)
|++|++++ |..+++. ++.....+++|+.+++............+ ...+++|++|+++ .|.+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l----~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI----GTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH----HHHCCSCCEEEEEECSCCSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH----HhhCCCCcEEEEeecCCCccc
Confidence 66666663 3223322 22223345555555553222221111100 0123456666654 3444
Q ss_pred ccc-----CchhhcCCCCCcEEECCCCc--ccCCCccccc-CCCCCCEEeCCCCcCCc-cCcccccCCCCCCeeeCCCcc
Q 047285 421 SGH-----LTNQLLQFKSLHTLELGHNS--LFGPLPPALG-ELSSLKKLDLSNNMLNG-FIPLSLGKLSHLEYLDLSNNK 491 (552)
Q Consensus 421 ~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 491 (552)
++. ++..+..+++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 432 22234445566666665432 3333222222 35556666666665543 233344555566666666665
Q ss_pred cceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285 492 LNASLSEIHFVNLTKLTWFSASGNSLIL 519 (552)
Q Consensus 492 l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 519 (552)
+++......+..+++|++|++++|+++.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5443222134455666666666666543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.9e-28 Score=234.47 Aligned_cols=263 Identities=22% Similarity=0.304 Sum_probs=192.7
Q ss_pred CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC--ccccccccCCCCccEEeccCccccccCchhhhcccCC
Q 047285 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL--FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307 (552)
Q Consensus 230 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 307 (552)
++|++|++++|.+...++..+.++++|++|++++|.+.... +. .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ---SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH---HHHSCSCCCEEECCSCSEE-EEEEEEETCTTC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc---ccccccccCEEECCCCccc-cChhhcCCCCCC
Confidence 46777777777777666666777777888888777766331 22 4556788888888888877 456667788888
Q ss_pred cEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCC-CCchhHhhcccCceee
Q 047285 308 RHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG-KIPTSFARLCKLTSVD 385 (552)
Q Consensus 308 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~~l~ 385 (552)
++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|. +.+ .+|..+..+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l------- 174 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTEL------- 174 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTTC-------
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc-cccccchhHHhhC-------
Confidence 888888888877655 56778888888888888887655554 7788888888888887 544 344444333
Q ss_pred cccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCC
Q 047285 386 LSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465 (552)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 465 (552)
++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 175 ----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 175 ----------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp ----------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred ----------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 3788888888888887788888888888888888888876666788888888888888
Q ss_pred CcCCccCcccccCCC-CCCeeeCCCcccceecCHHh-hhcCCCCCEEEccCCeeeEEcCCCCcC
Q 047285 466 NMLNGFIPLSLGKLS-HLEYLDLSNNKLNASLSEIH-FVNLTKLTWFSASGNSLILKFNPNWVP 527 (552)
Q Consensus 466 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~ 527 (552)
|++++..|..+..++ +|++|++++|++++...... ...+...+.+.+..+.+.+..|..+..
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 888888888888774 88888888888876543211 222334445556667777777765544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.9e-28 Score=234.92 Aligned_cols=281 Identities=21% Similarity=0.196 Sum_probs=219.0
Q ss_pred CEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc--CchhhhcccCCcEE
Q 047285 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHL 310 (552)
Q Consensus 233 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L 310 (552)
+.++.+++.++..+... .+++++|++++|.++...+. .+..+++|++|++++|.++.. .+..+..+++|++|
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHh---HhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 45666666666555432 36899999999998855444 567889999999999988733 36677788999999
Q ss_pred eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390 (552)
Q Consensus 311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~ 390 (552)
++++|.+++ +|..+..+++|++|++++|.+++..+...+..+++|++|++++|. +.+..+..+..++
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~----------- 150 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLS----------- 150 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCT-----------
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCc-----------
Confidence 999998874 555678889999999999998854442448888999999999997 6666655555444
Q ss_pred CCCCCccccccccccCCCCCCEEEccCCcCcc-cCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISG-HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
+|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++
T Consensus 151 ------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 151 ------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ------------------CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 78999999999886 57788889999999999999998877888999999999999999998
Q ss_pred ccCcccccCCCCCCeeeCCCcccceecCHHhhhcCC-CCCEEEccCCeeeEEcCCC--CcCcccccEEecCCCCCCCCCC
Q 047285 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLT-KLTWFSASGNSLILKFNPN--WVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 470 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~iP 546 (552)
+..+..+..+++|++|++++|++++..+. .+..++ +|++|++++|++.+..+.. ..-+...+.+.+..+++....|
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 76676788899999999999999887777 677774 8999999999998765321 1113345566677777777777
Q ss_pred ccccc
Q 047285 547 SWLHS 551 (552)
Q Consensus 547 ~~l~~ 551 (552)
+++..
T Consensus 292 ~~~~g 296 (306)
T 2z66_A 292 SDKQG 296 (306)
T ss_dssp GGGTT
T ss_pred hhhCC
Confidence 77643
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=240.01 Aligned_cols=205 Identities=23% Similarity=0.213 Sum_probs=114.7
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
-..++.....+.+++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++.++.. .+.
T Consensus 27 ~~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~ 97 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-----SFS 97 (353)
T ss_dssp CCEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTT
T ss_pred CCCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-----hcC
Confidence 344566667888888888 5777654 5889999999888865555788888888888888877654322 145
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC-CcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP-LLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 280 (552)
.+++|++|++++|.++..+ +..+..+++|++|++++|.+.+.++ .. +..+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~---------------------------~~~l 148 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSL---------------------------FSHL 148 (353)
T ss_dssp TCTTCCEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCS---------------------------CTTC
T ss_pred CCCCCCEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhh---------------------------hccC
Confidence 5566666666666555421 1224455555555555555544333 22 3334
Q ss_pred CCccEEeccCcc-ccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 281 RNLVFIDLSSNQ-FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 281 ~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
++|++|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEE
Confidence 444444444442 33233344444555555555555554444444444555555555555443 2333223334555555
Q ss_pred eCCCCC
Q 047285 360 DLSGNS 365 (552)
Q Consensus 360 ~l~~n~ 365 (552)
++++|.
T Consensus 228 ~L~~n~ 233 (353)
T 2z80_A 228 ELRDTD 233 (353)
T ss_dssp EEESCB
T ss_pred ECCCCc
Confidence 555554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.2e-28 Score=240.23 Aligned_cols=280 Identities=19% Similarity=0.175 Sum_probs=132.3
Q ss_pred CCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252 (552)
Q Consensus 173 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 252 (552)
.++.....+++++.++.+|... .++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~--------~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL--------TEAVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC--------CTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCeEeeCCCCCcccccccc--------cccCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 3455556677776666655321 13566666666655542 1223455555556665555555555555555
Q ss_pred CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCc-hhhhcccCCcEEeccCC-CCCCCCCccCCCCCC
Q 047285 253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFN-YFNSTTPGWLSKFND 330 (552)
Q Consensus 253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 330 (552)
+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..+.++++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSS---WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHH---HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCCCCEEECCCCcCCcCCHh---HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 55555555555555443322 34445555555555555442211 23444555555555554 233333444444455
Q ss_pred CCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285 331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410 (552)
Q Consensus 331 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L 410 (552)
|++|++++|.+++..+.. +..+++|++|++++|. +. .+|..+.. .+++|
T Consensus 176 L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~-l~-~~~~~~~~----------------------------~~~~L 224 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQ-HI-LLLEIFVD----------------------------VTSSV 224 (353)
T ss_dssp EEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSC-ST-THHHHHHH----------------------------HTTTE
T ss_pred CCEEECCCCCcCccCHHH-HhccccCCeecCCCCc-cc-cchhhhhh----------------------------hcccc
Confidence 555555555544333333 4444555555555544 32 22221111 11245
Q ss_pred CEEEccCCcCcccCchhhc---CCCCCcEEECCCCcccC----CCcccccCCCCCCEEeCCCCcCCccCccc-ccCCCCC
Q 047285 411 ESLDLSICQISGHLTNQLL---QFKSLHTLELGHNSLFG----PLPPALGELSSLKKLDLSNNMLNGFIPLS-LGKLSHL 482 (552)
Q Consensus 411 ~~L~ls~n~~~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 482 (552)
++|++++|.+++..+..+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 303 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence 5555555555544332221 23444555555554443 23444455555555555555555 33333 3445555
Q ss_pred CeeeCCCcccceecC
Q 047285 483 EYLDLSNNKLNASLS 497 (552)
Q Consensus 483 ~~L~L~~n~l~~~~~ 497 (552)
++|++++|++.+..|
T Consensus 304 ~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 304 QKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEeeCCCccCcCC
Confidence 555555555544443
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=8.9e-28 Score=235.37 Aligned_cols=235 Identities=20% Similarity=0.234 Sum_probs=156.7
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
.++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence 355666666666665 55555666666666666666666 55666666666666666666666 55554 6666667777
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L 439 (552)
++++|. ..+.+|..+.... ....+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 156 ~L~~n~-~~~~~p~~~~~~~--------------------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 156 SIRACP-ELTELPEPLASTD--------------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp EEEEET-TCCCCCSCSEEEC---------------------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred ECCCCC-CccccChhHhhcc--------------------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 776665 5555555443311 0011223456777777777776 56666777777777777
Q ss_pred CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL 519 (552)
Q Consensus 440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 519 (552)
++|+++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.++++|++|+|++|++.+
T Consensus 214 ~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp ESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCC
T ss_pred cCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchh
Confidence 777777 3555677777777777777777777777777777777777777777777776 57777777777777777777
Q ss_pred EcCCCCcCcccccEEecCCCCCC
Q 047285 520 KFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 520 ~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
.+|..+..+++|+.+++..+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777766554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-26 Score=238.03 Aligned_cols=228 Identities=21% Similarity=0.187 Sum_probs=193.6
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
+++++|+|++|.+++. .|+.|+.+++|++|+|++|++++..|..+.++++|++|++++|.++.++... +..+++
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA-----FEYLSK 148 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT-----SSSCTT
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh-----hcccCC
Confidence 6889999999999863 5788899999999999999998777788899999999999999887765432 678889
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCC-CCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC-QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
|++|++++|.+... ....+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+. + .+..+++|+
T Consensus 149 L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~----~~~~l~~L~ 221 (452)
T 3zyi_A 149 LRELWLRNNPIESI--PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P----NLTPLVGLE 221 (452)
T ss_dssp CCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C----CCTTCTTCC
T ss_pred CCEEECCCCCccee--CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c----ccccccccc
Confidence 99999999988763 2346778999999999984 45556666788999999999999998864 2 467889999
Q ss_pred EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSS
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCC
Confidence 9999999999888899999999999999999999988889999999999999999998 555555888999999999999
Q ss_pred CCCC
Q 047285 365 SKLG 368 (552)
Q Consensus 365 ~~l~ 368 (552)
+ +.
T Consensus 301 p-~~ 303 (452)
T 3zyi_A 301 P-WN 303 (452)
T ss_dssp C-EE
T ss_pred C-cC
Confidence 8 54
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.4e-27 Score=228.14 Aligned_cols=250 Identities=23% Similarity=0.223 Sum_probs=159.1
Q ss_pred CCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCE
Q 047285 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEF 333 (552)
Q Consensus 255 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 333 (552)
+++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CceEEEeeCCcCCccCHH---HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 344444444444433333 34445555555555555555445556666666666666665 55554556666666666
Q ss_pred EEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEE
Q 047285 334 LSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413 (552)
Q Consensus 334 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 413 (552)
|++++|.+++..+.. +..+++|++|++++|. +++..+..+..++ +|++|
T Consensus 110 L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-----------------------------~L~~L 158 (285)
T 1ozn_A 110 LHLDRCGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTFRDLG-----------------------------NLTHL 158 (285)
T ss_dssp EECTTSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCT-----------------------------TCCEE
T ss_pred EECCCCcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHhccCC-----------------------------CccEE
Confidence 666666666433333 6666777777777776 5544333343333 67777
Q ss_pred EccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN 493 (552)
Q Consensus 414 ~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 493 (552)
++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 77777777666666777888888888888888777778888888888888888888665666788888888888888887
Q ss_pred eecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcC--cccccEEecCCCC
Q 047285 494 ASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVP--PFQLETLQLRSCH 540 (552)
Q Consensus 494 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~~~L~~L~l~~n~ 540 (552)
...+...+. ..++.+....+.+.+..|..+.. +..++..++++|+
T Consensus 239 c~~~~~~~~--~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 239 CDCRARPLW--AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CSGGGHHHH--HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CCCCcHHHH--HHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 655432111 22344456777888888876644 4566666666663
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.3e-30 Score=275.89 Aligned_cols=394 Identities=12% Similarity=0.015 Sum_probs=277.2
Q ss_pred CccccccCccccC-CCC-CCEEeCCCCc-CCCCccCcccCCCCCCCEEeCCCCcCCCC----CccccCCCCCCCEEeccC
Q 047285 112 SKLGGKVNPSLVD-LKH-LIHLDLSGND-FEGIQIPKYLGSLENLRYLNLSGAKFAGM----IPLQLGNLSNLQYLDLSG 184 (552)
Q Consensus 112 ~~~~~~~~~~l~~-l~~-L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~ 184 (552)
+.+.+..+..+.. ++. |++|++++|. +....++.....+++|++|+|++|.+++. ++....++++|++|++++
T Consensus 122 ~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 201 (592)
T 3ogk_B 122 MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201 (592)
T ss_dssp CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT
T ss_pred cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec
Confidence 3555555555555 444 9999999886 32212344445789999999999988765 445567889999999999
Q ss_pred CCCCCCccccCCcc-ccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCC---CCCCCcccCCCCCceee
Q 047285 185 TFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC---HFPPLLSANFSSLKALH 260 (552)
Q Consensus 185 n~l~~~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~ 260 (552)
|.++.+.. ..++ .+..+++|++|++++|.+.+ ++..+..+++|++|+++.+... +.....+..+++|+.|+
T Consensus 202 n~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 202 TEFAKISP--KDLETIARNCRSLVSVKVGDFEILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp CCCSSCCH--HHHHHHHHHCTTCCEEECSSCBGGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred cCCCccCH--HHHHHHHhhCCCCcEEeccCccHHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 98763321 1222 24578999999999998776 5566778899999999864332 23345667788999999
Q ss_pred cCCCCCCCCCccccccccCCCCccEEeccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC-
Q 047285 261 LAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW- 338 (552)
Q Consensus 261 l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~- 338 (552)
++.+. .+.++. .+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 277 l~~~~-~~~l~~---~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 277 LSYMG-PNEMPI---LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp ETTCC-TTTGGG---GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccccc-hhHHHH---HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 98752 333444 66778999999999998765443 4467899999999984322223334446688999999993
Q ss_pred ----------ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhh-cccCceeeccccc--CCCCCccc--ccccc
Q 047285 339 ----------NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFAR-LCKLTSVDLSLID--LSQDFSQV--LDTFS 403 (552)
Q Consensus 339 ----------n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~l~l~~~~--~~~~~~~~--~~~~~ 403 (552)
+.+++.........+++|++|+++.+. +++..+..+.. +++|+.+++.... +.....+. -....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 555543222224558999999997776 88777777776 8889999886432 11111100 01111
Q ss_pred ccCCCCCCEEEccCCc--CcccCchhhcC-CCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCcc-CcccccC
Q 047285 404 SCGAYALESLDLSICQ--ISGHLTNQLLQ-FKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGF-IPLSLGK 478 (552)
Q Consensus 404 ~~~~~~L~~L~ls~n~--~~~~~~~~l~~-l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~ 478 (552)
..++++|++|++++|. +++..+..+.. +++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3457899999998654 66665555544 8999999999999986 3455668899999999999998754 4455567
Q ss_pred CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285 479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515 (552)
Q Consensus 479 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 515 (552)
+++|++|++++|++++.-.......++.+....+..+
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8999999999999977644423456788777666654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.5e-26 Score=234.88 Aligned_cols=252 Identities=20% Similarity=0.156 Sum_probs=192.0
Q ss_pred CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
....++.++..++.++ ..+ .+++++|++++|.+.+..+..|.++++|+.|++++|.+.+..+. .+..+++|+
T Consensus 55 ~~~~v~c~~~~l~~iP---~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVP---QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG---AFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCSSCC---SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCC
T ss_pred CCcEEEECCCCcCccC---CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh---hccCcccCC
Confidence 3467777777776643 222 26788888888888888888888888888888888888776666 677788888
Q ss_pred EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|...+.++...+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 88888888876666667778888888888888877666677788888888888755555666655777888888888888
Q ss_pred CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 444 (552)
. +++ +|. + ..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 207 ~-l~~-~~~-~-----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 207 N-IKD-MPN-L-----------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp C-CSS-CCC-C-----------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred c-ccc-ccc-c-----------------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 6 542 221 1 1334788888888888888888888888888888888888
Q ss_pred cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceec
Q 047285 445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496 (552)
Q Consensus 445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 496 (552)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++....
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 8777788888888888888888888666667778888888888888876544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.4e-26 Score=232.59 Aligned_cols=252 Identities=22% Similarity=0.193 Sum_probs=190.7
Q ss_pred CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
..+.++.++..++.++ ..+ .++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+. .+..+++|+
T Consensus 44 ~~~~v~c~~~~l~~iP---~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP---DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG---AFNGLANLN 115 (440)
T ss_dssp TSCEEECCSCCCSSCC---SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG---GGTTCSSCC
T ss_pred CCCEEEeCCCCcCcCC---CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh---hccCCccCC
Confidence 3567777777776643 222 26788888888888888888888888888888888887766655 677778888
Q ss_pred EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|...+.++...+..+++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 88888888776555567778888888888888777666677778888888888765555666655777788888888887
Q ss_pred CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL 444 (552)
Q Consensus 365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 444 (552)
. ++ .+|. + ..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 196 ~-l~-~~~~-~-----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 196 N-LR-EIPN-L-----------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp C-CS-SCCC-C-----------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred c-Cc-cccc-c-----------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 6 54 2221 1 2334788888888888888788888888888888888888
Q ss_pred cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceec
Q 047285 445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496 (552)
Q Consensus 445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 496 (552)
++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++....
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 8777788888888888888888888666667788888888888888876543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-26 Score=223.62 Aligned_cols=255 Identities=20% Similarity=0.158 Sum_probs=208.6
Q ss_pred ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEc
Q 047285 257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSV 336 (552)
Q Consensus 257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 336 (552)
+.++.+++.++.... . ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~~ip~----~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----G--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCT----T--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccCCc----C--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 345555555543321 1 2468999999999998777778899999999999999999888888999999999999
Q ss_pred cCcc-ceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285 337 AWNS-LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415 (552)
Q Consensus 337 ~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 415 (552)
++|. +. .++...+..+++|++|++++|. +++..+..+..++ +|++|++
T Consensus 88 ~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-----------------------------~L~~L~l 136 (285)
T 1ozn_A 88 SDNAQLR-SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA-----------------------------ALQYLYL 136 (285)
T ss_dssp CSCTTCC-CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT-----------------------------TCCEEEC
T ss_pred CCCCCcc-ccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc-----------------------------CCCEEEC
Confidence 9997 55 5544448889999999999998 7766666555554 8999999
Q ss_pred cCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee
Q 047285 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS 495 (552)
Q Consensus 416 s~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 495 (552)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 215 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA- 215 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-
Confidence 9999998877889999999999999999997666779999999999999999998889999999999999999999976
Q ss_pred cCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285 496 LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550 (552)
Q Consensus 496 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~ 550 (552)
++...+..+++|++|++++|++.+..+... ....++.+..+.+.+....|+.+.
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~-~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHHHHHHCCSEECCCBEEESGGGT
T ss_pred CCHHHcccCcccCEEeccCCCccCCCCcHH-HHHHHHhcccccCccccCCchHhC
Confidence 444379999999999999999997765321 123466667778888888887664
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=229.05 Aligned_cols=248 Identities=23% Similarity=0.218 Sum_probs=199.3
Q ss_pred CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCC
Q 047285 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSS 255 (552)
Q Consensus 176 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 255 (552)
..+.++.++..++.+|.. -.++++.|++++|.+... .+..+..+++|++|++++|.+.+..+..|.++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~--------~~~~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG--------ISTNTRLLNLHENQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp TSCEEECCSCCCSSCCSC--------CCTTCSEEECCSCCCCEE--CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCCEEEeCCCCcCcCCCC--------CCCCCcEEEccCCcCCee--CHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 356788888877777743 126788899999988763 3456778889999999999988888888888999
Q ss_pred CceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCEE
Q 047285 256 LKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEFL 334 (552)
Q Consensus 256 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 334 (552)
|++|++++|.+++..+. .+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+.++++|++|
T Consensus 114 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNG---AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCEEECCSSCCSSCCTT---TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CCEEECCCCcCCeeCHh---HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 99999999988876665 67788899999999998887666778888999999998854 444444578888899999
Q ss_pred EccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEE
Q 047285 335 SVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414 (552)
Q Consensus 335 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 414 (552)
++++|.++ .+|. +..+++|+.|++++|. +++..|..|..++ +|++|+
T Consensus 191 ~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~-----------------------------~L~~L~ 237 (440)
T 3zyj_A 191 NLAMCNLR-EIPN--LTPLIKLDELDLSGNH-LSAIRPGSFQGLM-----------------------------HLQKLW 237 (440)
T ss_dssp ECTTSCCS-SCCC--CTTCSSCCEEECTTSC-CCEECTTTTTTCT-----------------------------TCCEEE
T ss_pred cCCCCcCc-cccc--cCCCcccCEEECCCCc-cCccChhhhccCc-----------------------------cCCEEE
Confidence 99999887 5553 7788889999999987 7766666665554 788888
Q ss_pred ccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 415 LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 415 ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
+++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999888888888888899999999999988777777888889999999998875
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-24 Score=229.17 Aligned_cols=263 Identities=22% Similarity=0.213 Sum_probs=156.1
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~ 205 (552)
.++++|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|++++|.++.+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---------CCCC
Confidence 46899999999998 5787765 89999999999998 5665 67899999999998876552 5677
Q ss_pred CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285 (552)
Q Consensus 206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 285 (552)
|++|++++|.++..+. .+++|++|++++|.+++.+.. +++|++|++++|.+++. +. .+++|+.
T Consensus 103 L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l-~~------~~~~L~~ 165 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL-PA------LPSELCK 165 (622)
T ss_dssp CCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC-CC------CCTTCCE
T ss_pred CCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc-CC------ccCCCCE
Confidence 8888888887776432 456777777777776654431 25555555555555432 11 1234555
Q ss_pred EeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365 (552)
Q Consensus 286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 365 (552)
|++++|.+++ +| ..+++|+.|++++|.+++ ++. .+++|+.|++++|.
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-------------------------l~~----~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-------------------------LPT----LPSELYKLWAYNNR 212 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEECCSSC
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-------------------------CCC----ccchhhEEECcCCc
Confidence 5555555442 23 223444444444444443 222 12445555555554
Q ss_pred CCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc
Q 047285 366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF 445 (552)
Q Consensus 366 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 445 (552)
++ .+|.. +++|++|++++|.+++ +| ..+++|+.|++++|+++
T Consensus 213 -l~-~l~~~--------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 213 -LT-SLPAL--------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp -CS-SCCCC--------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred -cc-ccCCC--------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 32 11110 0145555555555554 22 23455666666666555
Q ss_pred CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCH
Q 047285 446 GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSE 498 (552)
Q Consensus 446 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 498 (552)
.+|. .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++++.+|.
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3443 3455666666666665 4555566666666666666666555544
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.3e-30 Score=273.22 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCCEEEccCCcCcccCchhhc-CCCCCcEEECC--C----CcccCC-----CcccccCCCCCCEEeCCCCcCCccCccc
Q 047285 408 YALESLDLSICQISGHLTNQLL-QFKSLHTLELG--H----NSLFGP-----LPPALGELSSLKKLDLSNNMLNGFIPLS 475 (552)
Q Consensus 408 ~~L~~L~ls~n~~~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 475 (552)
++|++|.++.+.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4555555555555544333333 35555555555 2 233211 111134455555555544 333332223
Q ss_pred ccC-CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCcccccEEecCCCCC
Q 047285 476 LGK-LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 476 ~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~ 541 (552)
+.. +++|++|++++|.+++..+.....++++|++|++++|++++.... ....+++|+.|++++|++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322 455555555555554433331224455555555555555322222 222345555555555554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.8e-27 Score=231.94 Aligned_cols=248 Identities=22% Similarity=0.172 Sum_probs=159.6
Q ss_pred cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccc-ccCchhhh-------cccCCcEEeccCCCCCCCCC
Q 047285 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ-GQIPIGLR-------NLTSLRHLDLRFNYFNSTTP 322 (552)
Q Consensus 251 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~ 322 (552)
...++|+.|++++|.+ .+|. .+... |+.|++++|.+. ..+|..+. .+++|++|++++|.+++..|
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~---~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLG---QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCH---HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred ccCCCceeEeeccccc--ccHH---HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3445566666666665 3333 22222 666666666663 34454443 56677777777777776666
Q ss_pred ccC--CCCCCCCEEEccCccceeecCccccCCC-----CccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC
Q 047285 323 GWL--SKFNDLEFLSVAWNSLQGTISSVGLENL-----TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF 395 (552)
Q Consensus 323 ~~l--~~l~~L~~L~l~~n~l~~~~~~~~l~~l-----~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 395 (552)
..+ ..+++|++|++++|.+++. |.. +..+ ++|++|++++|. +.+..+..+..++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~---------------- 173 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFP---------------- 173 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCS----------------
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCC----------------
Confidence 654 6667777777777776644 433 4433 677777777776 5555545544443
Q ss_pred ccccccccccCCCCCCEEEccCCcCccc--Cchhh--cCCCCCcEEECCCCcccC--CCc-ccccCCCCCCEEeCCCCcC
Q 047285 396 SQVLDTFSSCGAYALESLDLSICQISGH--LTNQL--LQFKSLHTLELGHNSLFG--PLP-PALGELSSLKKLDLSNNML 468 (552)
Q Consensus 396 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l 468 (552)
+|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+
T Consensus 174 -------------~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 174 -------------ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp -------------SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred -------------CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 677777777776654 23333 667778888888887762 122 2335677888888888887
Q ss_pred CccCc-ccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 469 NGFIP-LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 469 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
++..| ..+..+++|++|++++|+++ .+|. .+. ++|++|++++|++.+. |. +..+++|+.|++++|++++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhh-hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 76654 34556778888888888885 5665 333 7788888888888765 54 7778888888888888875
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3e-24 Score=226.12 Aligned_cols=266 Identities=24% Similarity=0.235 Sum_probs=197.5
Q ss_pred CCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285 151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP 230 (552)
Q Consensus 151 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 230 (552)
.++++|++++|+++ .+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++..+. .++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~------~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPV------LPP 101 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCCCC------CCT
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcCCC------CCC
Confidence 35899999999998 7787776 899999999998876552 35677777777777665322 456
Q ss_pred CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEE
Q 047285 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 310 (552)
+|++|++++|.+++.+. .+++|+.|++++|.+++ +|.. +++|++|
T Consensus 102 ~L~~L~Ls~N~l~~l~~-------------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA-------------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp TCCEEEECSCCCCCCCC-------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred CCCEEECcCCcCCCCCC-------------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 66666666666554332 23456666666666553 3432 3677777
Q ss_pred eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390 (552)
Q Consensus 311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~ 390 (552)
++++|.+++. |. .+++|+.|++++|.++ .++ ..+++|+.|++++|. +++ +|..
T Consensus 147 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~-l~~-l~~~---------------- 199 (622)
T 3g06_A 147 SVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQ-LAS-LPTL---------------- 199 (622)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC-CSC-CCCC----------------
T ss_pred ECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCC-CCC-CCCc----------------
Confidence 7777777653 22 3467888888888887 355 346889999999997 653 3321
Q ss_pred CCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc
Q 047285 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG 470 (552)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 470 (552)
.++|+.|++++|.++. +|. .+++|+.|++++|++++ +| ..+++|++|++++|.++
T Consensus 200 ----------------~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 200 ----------------PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp ----------------CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred ----------------cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence 1379999999999985 443 35899999999999985 66 56789999999999998
Q ss_pred cCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285 471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV 526 (552)
Q Consensus 471 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 526 (552)
.+|. .+++|+.|++++|+++ .+|. .+.++++|+.|+|++|++.+..|..+.
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5776 5789999999999996 7887 799999999999999999987765443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-26 Score=224.05 Aligned_cols=254 Identities=22% Similarity=0.209 Sum_probs=116.6
Q ss_pred EEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccC
Q 047285 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF 314 (552)
Q Consensus 235 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 314 (552)
.+++.+.+...+...+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA---DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH---HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH---HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 33344433333333333444555555555555444433 44445555555555555443322 44445555555555
Q ss_pred CCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCC
Q 047285 315 NYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQD 394 (552)
Q Consensus 315 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 394 (552)
|.+++.. ..++|++|++++|.+++..+. .+++|+.|++++|. +++..+..+..++
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~-l~~~~~~~~~~l~--------------- 144 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNK-ITMLRDLDEGCRS--------------- 144 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSC-CCSGGGBCTGGGS---------------
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCC-CCCccchhhhccC---------------
Confidence 5444321 124455555555544422211 23444555555544 3333232222222
Q ss_pred CccccccccccCCCCCCEEEccCCcCcccCchhhc-CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCc
Q 047285 395 FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL-QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIP 473 (552)
Q Consensus 395 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 473 (552)
+|++|++++|.+++..+..+. .+++|++|++++|++++. +. ...+++|++|++++|.+++ +|
T Consensus 145 --------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 145 --------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp --------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-EC
T ss_pred --------------CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-ch
Confidence 455555555555554444432 455555555555555432 21 2235555555555555553 33
Q ss_pred ccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee-EEcCCCCcCcccccEEecC
Q 047285 474 LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI-LKFNPNWVPPFQLETLQLR 537 (552)
Q Consensus 474 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~l~ 537 (552)
..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++. +..|..+..+++|+.++++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCccc-chhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 33455555555555555553 2444 3455555555555555555 3333334444455555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.7e-27 Score=229.65 Aligned_cols=277 Identities=19% Similarity=0.185 Sum_probs=163.0
Q ss_pred CCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285 58 RLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137 (552)
Q Consensus 58 ~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 137 (552)
..++|.. ...|+.+..+.......+++.+++++. .+ .+|..+... |++|++++|.
T Consensus 20 ~~~~~~~-~~~c~~~~~~~~~~~~~~L~~l~l~~n--------------------~l--~~p~~~~~~--L~~L~L~~n~ 74 (312)
T 1wwl_A 20 PKPDWSS-AFNCLGAADVELYGGGRSLEYLLKRVD--------------------TE--ADLGQFTDI--IKSLSLKRLT 74 (312)
T ss_dssp SSCCGGG-GGGSSSCSEEEEEEEEEECTTHHHHCC--------------------TT--CCCHHHHHH--HHHCCCCEEE
T ss_pred cccchHH-HhhhhccccEEEEccCCCceeEeeccc--------------------cc--ccHHHHHHH--Hhhccccccc
Confidence 3567875 456766666544322334555556553 33 444444333 6666666666
Q ss_pred CCCCccCcccC-------CCCCCCEEeCCCCcCCCCCcccc--CCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285 138 FEGIQIPKYLG-------SLENLRYLNLSGAKFAGMIPLQL--GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH 208 (552)
Q Consensus 138 ~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~ 208 (552)
+....+|..+. .+++|++|++++|++++.+|..+ +++++|++|++++|.++..|.....++ ...+++|++
T Consensus 75 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~~~~~~L~~ 153 (312)
T 1wwl_A 75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKV 153 (312)
T ss_dssp EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH-TTCCTTCCE
T ss_pred ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH-HhhcCCCcE
Confidence 64334555544 56666666666666666666654 666666666666666655431100000 011266666
Q ss_pred EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCC--CC--cccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP--PL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
|++++|.+.+. .+..+..+++|++|++++|.+.+.. +. .+..+++|++|++++|.+++........+..+++|+
T Consensus 154 L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 154 LSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp EEEESCSCCCC--CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred EEeeCCCCccc--hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 66666666552 2345566667777777776655431 11 225667777777777766632111001334567777
Q ss_pred EEeccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285 285 FIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363 (552)
Q Consensus 285 ~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~ 363 (552)
+|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKG 305 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccC
Confidence 77777777776553 34555677888888888777 5555554 7788888888887744 43 67778888888888
Q ss_pred CCCCCC
Q 047285 364 NSKLGG 369 (552)
Q Consensus 364 n~~l~~ 369 (552)
|+ +++
T Consensus 306 N~-l~~ 310 (312)
T 1wwl_A 306 NP-FLD 310 (312)
T ss_dssp CT-TTC
T ss_pred CC-CCC
Confidence 87 553
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-27 Score=231.75 Aligned_cols=267 Identities=21% Similarity=0.179 Sum_probs=214.7
Q ss_pred CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
.++..+++.+.+.. .....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. .+..+++|+
T Consensus 11 ~l~i~~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~ 83 (317)
T 3o53_A 11 RYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLR 83 (317)
T ss_dssp EEEEESCCTTTHHH--HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCC
T ss_pred ceeEeeccccchhh--hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCC
Confidence 45566676666544 23344567889999999999999998889999999999999999987654 267889999
Q ss_pred EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 364 (552)
+|++++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..+.. +..+++|+.|++++|
T Consensus 84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLN 154 (317)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTS
T ss_pred EEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCC
Confidence 9999999987432 348999999999999876554 3678999999999998544444 888999999999999
Q ss_pred CCCCCCCchhHh-hcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc
Q 047285 365 SKLGGKIPTSFA-RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS 443 (552)
Q Consensus 365 ~~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 443 (552)
. +++..+..+. .+ ++|++|++++|.+++.. ....+++|++|++++|+
T Consensus 155 ~-l~~~~~~~~~~~l-----------------------------~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 155 E-IDTVNFAELAASS-----------------------------DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp C-CCEEEGGGGGGGT-----------------------------TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSC
T ss_pred C-CCcccHHHHhhcc-----------------------------CcCCEEECCCCcCcccc--cccccccCCEEECCCCc
Confidence 8 7765555443 33 38999999999998653 23358999999999999
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc-eecCHHhhhcCCCCCEEEccCCe-eeEEc
Q 047285 444 LFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN-ASLSEIHFVNLTKLTWFSASGNS-LILKF 521 (552)
Q Consensus 444 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~-~~~~~ 521 (552)
+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.++. .+..+++|+.+++++++ +.+..
T Consensus 203 l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCchhccCCc
Confidence 985 5556889999999999999998 57888899999999999999998 55565 78899999999998554 44444
Q ss_pred C
Q 047285 522 N 522 (552)
Q Consensus 522 ~ 522 (552)
|
T Consensus 280 ~ 280 (317)
T 3o53_A 280 E 280 (317)
T ss_dssp S
T ss_pred h
Confidence 3
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.8e-24 Score=203.11 Aligned_cols=218 Identities=23% Similarity=0.278 Sum_probs=143.6
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcc
Q 047285 67 GDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKY 146 (552)
Q Consensus 67 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~ 146 (552)
.++|.|.|+.|.- .+.++.+++++. .++ .+|..+. +++++|++++|.+.+. .+..
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~--------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~ 56 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK--------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKA 56 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS--------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC--------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHH
Confidence 4799999999863 345667777763 443 3554443 5788888888888853 4457
Q ss_pred cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285 147 LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226 (552)
Q Consensus 147 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~ 226 (552)
|+.+++|++|++++|+++...+..+.++++|++|++++|.++.++... +..+++|++|++++|.
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~----------- 120 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQ----------- 120 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSC-----------
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCc-----------
Confidence 888888888888888887544455677888888888888776654321 3444555555555554
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306 (552)
Q Consensus 227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 306 (552)
+.+.++..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++
T Consensus 121 ---------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 121 ---------------LKSLPPRVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp ---------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------------cCeeCHHHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 4444444455555555555555555544333 4555666777777777666555555667777
Q ss_pred CcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343 (552)
Q Consensus 307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 343 (552)
|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 7777777777776666667777777777777777653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-25 Score=227.84 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCccccc-CCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALG-ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
+|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|+|
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 198 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence 344455555554444444444445555555555555444444443 344555555555554432 11 123445555555
Q ss_pred CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC-CCCCcc
Q 047285 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG-PHFPSW 548 (552)
Q Consensus 488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~iP~~ 548 (552)
++|.+++..| .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|.+
T Consensus 199 s~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 199 SSNKLAFMGP--EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CSSCCCEECG--GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred CCCCCCCCCH--hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 5555543222 24444555555555555443 3444444445555555555544 344433
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.7e-28 Score=259.00 Aligned_cols=408 Identities=15% Similarity=0.066 Sum_probs=256.8
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCC-cCCCC-CccccCCCCCCCEEeccCCCCCCCccccCCcc
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGA-KFAGM-IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS 198 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~-~~~~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 198 (552)
...+++|++|++++|.+++ ..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.++.... ..++
T Consensus 101 ~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~ 177 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HWLS 177 (594)
T ss_dssp HHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGG
T ss_pred HHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHH
Confidence 3578899999999998876 3455554 6889999999988 44432 44455688999999999887654321 1122
Q ss_pred c-cCCCCCCCEEeCCCCc-CCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC--C-CCccc
Q 047285 199 W-LSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD--N-SLFQY 273 (552)
Q Consensus 199 ~-l~~l~~L~~L~ls~n~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~-~~~~~ 273 (552)
. ...+++|++|++++|. ......+......+++|++|++++|...+..+..+..+++|+.|+++.+... . .+...
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 2 2367899999999886 1111223334456899999999988433335666777888999987655321 0 00111
Q ss_pred cccccCCCCccEE-eccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccC
Q 047285 274 GSWVFGLRNLVFI-DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLE 351 (552)
Q Consensus 274 ~~~~~~l~~L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 351 (552)
...+.++++|+.+ .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+........
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 1145677888888 4444332 2455555678889999999888654322 23467888999999887 43222222133
Q ss_pred CCCccCEEeCCC--------CCCCCCCCchhHh-hcccCceeecccccCCCCCccccccccccCCCCCCEEEcc--C---
Q 047285 352 NLTSIETLDLSG--------NSKLGGKIPTSFA-RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS--I--- 417 (552)
Q Consensus 352 ~l~~L~~L~l~~--------n~~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls--~--- 417 (552)
.+++|+.|++++ +..+++.....+. .+++|+.+.+............+ ...+++|+.|+++ +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l----~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI----ARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH----HHHCTTCCEEEEEESSTTC
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH----HhhCCCcceeEeecccCCC
Confidence 578888888833 2224443333343 47778877654433322111111 1135688999988 3
Q ss_pred -CcCccc-----CchhhcCCCCCcEEECCCCcccCCCcccccC-CCCCCEEeCCCCcCCccCcccc-cCCCCCCeeeCCC
Q 047285 418 -CQISGH-----LTNQLLQFKSLHTLELGHNSLFGPLPPALGE-LSSLKKLDLSNNMLNGFIPLSL-GKLSHLEYLDLSN 489 (552)
Q Consensus 418 -n~~~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~ 489 (552)
+.+++. ++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 455522 222356788899999977 666555555554 7889999999998876544444 5688899999999
Q ss_pred cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCC-cCcccccEEecCCC
Q 047285 490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNW-VPPFQLETLQLRSC 539 (552)
Q Consensus 490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~n 539 (552)
|++++.........+++|++|++++|+++......+ ..+++++...+..+
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 988655444345568889999999998853322222 23445544444444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-25 Score=228.63 Aligned_cols=240 Identities=24% Similarity=0.272 Sum_probs=205.8
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
....+++|++|+|++|.+.+. .|..|+.+++|++|+|++|.+++..| ++.+++|++|++++|.++.++
T Consensus 29 l~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--------- 96 (487)
T 3oja_A 29 LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------- 96 (487)
T ss_dssp TSTTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------
T ss_pred hcccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------
Confidence 344566999999999999974 67899999999999999999987655 999999999999999877643
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccccc-C
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-G 279 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~ 279 (552)
..++|++|++++|.+.+.+. ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+. .+. .
T Consensus 97 -~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~ 167 (487)
T 3oja_A 97 -VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAAS 167 (487)
T ss_dssp -ECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGG
T ss_pred -CCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhh
Confidence 33899999999999988432 3578999999999999999999999999999999999999998776 554 7
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
+++|++|++++|.+++. + ....+++|++|++++|.+++..+. +..+++|+.|++++|.+++ +|.. +..+++|+.|
T Consensus 168 l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L 242 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHF 242 (487)
T ss_dssp TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEE
T ss_pred CCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchh-hccCCCCCEE
Confidence 89999999999999865 3 244689999999999999976554 8889999999999999994 7776 8899999999
Q ss_pred eCCCCCCCC-CCCchhHhhcccCceeecc
Q 047285 360 DLSGNSKLG-GKIPTSFARLCKLTSVDLS 387 (552)
Q Consensus 360 ~l~~n~~l~-~~~~~~~~~l~~L~~l~l~ 387 (552)
++++|+ +. +.+|.++..++.++.+++.
T Consensus 243 ~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 243 DLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred EcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 999998 55 6778888888866666654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.3e-25 Score=208.99 Aligned_cols=206 Identities=24% Similarity=0.244 Sum_probs=118.6
Q ss_pred hcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccC
Q 047285 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL 381 (552)
Q Consensus 302 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 381 (552)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|. +++..+..+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~-- 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLT-- 109 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCT--
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCc-cCccChhHhcCCc--
Confidence 3445555555555554422 224455555555555555543 22 25556666666666665 5444333333333
Q ss_pred ceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEE
Q 047285 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKL 461 (552)
Q Consensus 382 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 461 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 110 ---------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 110 ---------------------------NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp ---------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ---------------------------CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 56666666666665555555666666666666666665555555666666666
Q ss_pred eCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 462 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 541 (552)
++++|.+++..+..+..+++|++|++++|++++..+. .+..+++|++|++++|++.+.+ ++|+.++++.|++
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKH 234 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhC
Confidence 6666666655555556666666666666666554443 4566666666666666665443 2466666666666
Q ss_pred CCCCCcccc
Q 047285 542 GPHFPSWLH 550 (552)
Q Consensus 542 ~~~iP~~l~ 550 (552)
+|.+|.+++
T Consensus 235 ~g~ip~~~~ 243 (272)
T 3rfs_A 235 SGVVRNSAG 243 (272)
T ss_dssp GGGBBCTTS
T ss_pred CCcccCccc
Confidence 666666654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=199.92 Aligned_cols=209 Identities=22% Similarity=0.193 Sum_probs=157.9
Q ss_pred CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 360 (552)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-hcCCccccEEE
Confidence 46888888888887666667788888888888888887777777888888888888888887544444 77888888888
Q ss_pred CCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc-CchhhcCCCCCcEEEC
Q 047285 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH-LTNQLLQFKSLHTLEL 439 (552)
Q Consensus 361 l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~l~~l~~L~~L~L 439 (552)
+++|. +.+..+..+. .+++|++|++++|.+++. +|..+..+++|+.|++
T Consensus 107 l~~n~-l~~~~~~~~~-----------------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 107 AVETN-LASLENFPIG-----------------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTSC-CCCSTTCCCT-----------------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCC-ccccCchhcc-----------------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 88886 5543333333 334788888888888764 5788888889999999
Q ss_pred CCCcccCCCcccccCCCCCC----EEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285 440 GHNSLFGPLPPALGELSSLK----KLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515 (552)
Q Consensus 440 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 515 (552)
++|++++..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+. .+..+++|++|++++|
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTT-TTTTCCSCCEEECCSS
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHh-HhcccccccEEEccCC
Confidence 99988876666776666666 88889988885444443 345788899999888654443 6788888889999988
Q ss_pred eeeEEcC
Q 047285 516 SLILKFN 522 (552)
Q Consensus 516 ~~~~~~~ 522 (552)
++.+.++
T Consensus 235 ~~~c~c~ 241 (276)
T 2z62_A 235 PWDCSCP 241 (276)
T ss_dssp CBCCCTT
T ss_pred cccccCC
Confidence 8887765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2e-22 Score=192.73 Aligned_cols=208 Identities=27% Similarity=0.302 Sum_probs=135.5
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML 206 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L 206 (552)
+|++|++++|.+++. .+..+..+++|++|++++|++++..+..+.++++|++|++++|.++.++
T Consensus 29 ~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 92 (276)
T 2z62_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--------------- 92 (276)
T ss_dssp TCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC---------------
T ss_pred CccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC---------------
Confidence 456666666655532 2335555566666666666555444445555555555555555444332
Q ss_pred CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC-CccccccccCCCCccE
Q 047285 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS-LFQYGSWVFGLRNLVF 285 (552)
Q Consensus 207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~ 285 (552)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++. .+..+++|++
T Consensus 93 ----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~ 153 (276)
T 2z62_A 93 ----------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEH 153 (276)
T ss_dssp ----------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCE
T ss_pred ----------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCE
Confidence 23345556666666666666666665666777777777777776653 344 6677788888
Q ss_pred EeccCccccccCchhhhcccCCc----EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 286 IDLSSNQFQGQIPIGLRNLTSLR----HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 286 L~L~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
|++++|.+++..+..+..+++|+ +|++++|.+++..+..+.. .+|++|++++|+++ .++...+..+++|+.|++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEEC
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee-ecCHhHhcccccccEEEc
Confidence 88888888776666677666666 7888888887665554443 47888888888887 455544788889999999
Q ss_pred CCCCCCCCCCc
Q 047285 362 SGNSKLGGKIP 372 (552)
Q Consensus 362 ~~n~~l~~~~~ 372 (552)
++|+ +.+..+
T Consensus 232 ~~N~-~~c~c~ 241 (276)
T 2z62_A 232 HTNP-WDCSCP 241 (276)
T ss_dssp CSSC-BCCCTT
T ss_pred cCCc-ccccCC
Confidence 9888 665543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=4.8e-22 Score=189.26 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=169.0
Q ss_pred CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML 206 (552)
Q Consensus 127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L 206 (552)
..++++++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++.++.
T Consensus 17 ~~~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-------------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-------------- 78 (270)
T ss_dssp TTTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT--------------
T ss_pred CCCEEEccCCCCC--ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh--------------
Confidence 5778899888888 4676554 678888888888886666678888888888888887665442
Q ss_pred CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286 (552)
Q Consensus 207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L 286 (552)
..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+++..+. .+..+++|++|
T Consensus 79 -----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L 138 (270)
T 2o6q_A 79 -----------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYL 138 (270)
T ss_dssp -----------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEE
T ss_pred -----------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEE
Confidence 1234566777777777777777778888999999999999999988776 77889999999
Q ss_pred eccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCC
Q 047285 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366 (552)
Q Consensus 287 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~ 366 (552)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|+
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~- 216 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP- 216 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC-
Confidence 99999999766667899999999999999999988888999999999999999998 4555558899999999999998
Q ss_pred CCCC
Q 047285 367 LGGK 370 (552)
Q Consensus 367 l~~~ 370 (552)
+...
T Consensus 217 ~~c~ 220 (270)
T 2o6q_A 217 WDCT 220 (270)
T ss_dssp BCCS
T ss_pred eeCC
Confidence 6543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.5e-23 Score=199.81 Aligned_cols=211 Identities=21% Similarity=0.236 Sum_probs=143.1
Q ss_pred ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCcc
Q 047285 277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356 (552)
Q Consensus 277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 356 (552)
...+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+. .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-VFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh-HhcCCcCC
Confidence 3455667777777776652 2 2466677777777777776653 3566777777777777777643333 36777777
Q ss_pred CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcE
Q 047285 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHT 436 (552)
Q Consensus 357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~ 436 (552)
++|++++|. +++..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLT-----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCT-----------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCc-CCccCHHHhccCC-----------------------------CCCEEECCCCccCccCHHHhccCccCCE
Confidence 777777776 6554444444443 6777777777777666666677777777
Q ss_pred EECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCe
Q 047285 437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 437 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 516 (552)
|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. +++|+.+++..|.
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINK 233 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHH
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHh
Confidence 77777777766666667777777777777777766666677777778888877777543 3456677777777
Q ss_pred eeEEcCCCCcCccc
Q 047285 517 LILKFNPNWVPPFQ 530 (552)
Q Consensus 517 ~~~~~~~~~~~~~~ 530 (552)
+.|.+|..+..+..
T Consensus 234 ~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 234 HSGVVRNSAGSVAP 247 (272)
T ss_dssp TGGGBBCTTSCBCG
T ss_pred CCCcccCcccccCC
Confidence 77777776665543
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.2e-24 Score=211.55 Aligned_cols=253 Identities=20% Similarity=0.205 Sum_probs=118.5
Q ss_pred CCCEEEcCCCCCCCCCCCcccCC--CCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc-CchhhhcccCC
Q 047285 231 SLKVLKLTKCQLCHFPPLLSANF--SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ-IPIGLRNLTSL 307 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L 307 (552)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4666777666554 2333333 4555555555555544333 22445555555555555433 44444555555
Q ss_pred cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC-CchhHhhcccCceeec
Q 047285 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK-IPTSFARLCKLTSVDL 386 (552)
Q Consensus 308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~l~l 386 (552)
++|++++|.+++..+..+..+ ++|++|++++|..+++. ++..+..++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~-------------------------~~L~~L~L~~~~~l~~~~l~~~~~~~~------- 168 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKN-------------------------SNLVRLNLSGCSGFSEFALQTLLSSCS------- 168 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTC-------------------------TTCSEEECTTCBSCCHHHHHHHHHHCT-------
T ss_pred CEEeCcCcccCHHHHHHHhcC-------------------------CCCCEEECCCCCCCCHHHHHHHHhcCC-------
Confidence 555555554444333334444 44444444444213221 222222222
Q ss_pred ccccCCCCCccccccccccCCCCCCEEEccCC-cCccc-CchhhcCCC-CCcEEECCCC--ccc-CCCcccccCCCCCCE
Q 047285 387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSIC-QISGH-LTNQLLQFK-SLHTLELGHN--SLF-GPLPPALGELSSLKK 460 (552)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~~~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~ 460 (552)
+|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++
T Consensus 169 ----------------------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 169 ----------------------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp ----------------------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred ----------------------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 4555555555 44432 334444455 5555555555 232 233444445555555
Q ss_pred EeCCCCc-CCccCcccccCCCCCCeeeCCCcc-cceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCc-ccccEEec
Q 047285 461 LDLSNNM-LNGFIPLSLGKLSHLEYLDLSNNK-LNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPP-FQLETLQL 536 (552)
Q Consensus 461 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~-~~L~~L~l 536 (552)
|++++|. +++..+..+..+++|++|++++|. ++..... .+.++++|++|++++| ++. .+..+ .+++.|++
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEE
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEE
Confidence 5555555 444444455555555555555553 2111111 3445555555555555 222 12222 23555555
Q ss_pred CCCCCCCCCCcccc
Q 047285 537 RSCHLGPHFPSWLH 550 (552)
Q Consensus 537 ~~n~~~~~iP~~l~ 550 (552)
++|++++..|.+++
T Consensus 301 ~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 301 NCSHFTTIARPTIG 314 (336)
T ss_dssp SCCCSCCTTCSSCS
T ss_pred ecccCccccCCccc
Confidence 66666665555544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.6e-22 Score=190.47 Aligned_cols=202 Identities=23% Similarity=0.256 Sum_probs=136.3
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+.+++++++++++++.++ .+|..+. +++++|++++|++++..|..+.++++|++|++++|.++.++. .
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~ 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------D 73 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------C
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------C
Confidence 3678999999999999998 5777664 789999999999998778889999999999999998876543 3
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 280 (552)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+++.++..+..+++|+.|++++|.+.+..
T Consensus 74 ~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~---------- 140 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP---------- 140 (290)
T ss_dssp SCCTTCCEEECCSSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC----------
T ss_pred CCCCcCCEEECCCCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC----------
Confidence 567788888888887765 3344566677777777777776666655555555555555555554433
Q ss_pred CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 360 (552)
+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|.. +...++|+.++
T Consensus 141 -----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~ 201 (290)
T 1p9a_G 141 -----------------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAF 201 (290)
T ss_dssp -----------------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEE
T ss_pred -----------------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEE
Confidence 333444455555555555555444444455555555555555555 44444 44445666666
Q ss_pred CCCCC
Q 047285 361 LSGNS 365 (552)
Q Consensus 361 l~~n~ 365 (552)
+++|+
T Consensus 202 L~~Np 206 (290)
T 1p9a_G 202 LHGNP 206 (290)
T ss_dssp CCSCC
T ss_pred eCCCC
Confidence 66665
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5e-22 Score=190.77 Aligned_cols=204 Identities=21% Similarity=0.164 Sum_probs=109.4
Q ss_pred ccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC
Q 047285 250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN 329 (552)
Q Consensus 250 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 329 (552)
+.++++++.++++++.++...+. + .+++++|++++|.+++..+..+..+++|++|++++|.+++..+. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT
T ss_pred ccccCCccEEECCCCCCCcCCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC
Confidence 34455566666666555533222 1 14556666666666555555555566666666666655543221 4555
Q ss_pred CCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCC
Q 047285 330 DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409 (552)
Q Consensus 330 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 409 (552)
+|++|++++|.++ .+|.. +..+++|+.|++++|. +++..+..|..++ +
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~-----------------------------~ 125 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNR-LTSLPLGALRGLG-----------------------------E 125 (290)
T ss_dssp TCCEEECCSSCCS-SCCCC-TTTCTTCCEEECCSSC-CCCCCSSTTTTCT-----------------------------T
T ss_pred cCCEEECCCCcCC-cCchh-hccCCCCCEEECCCCc-CcccCHHHHcCCC-----------------------------C
Confidence 5555555555555 44443 4555555555555554 4433333333332 5
Q ss_pred CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489 (552)
Q Consensus 410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 489 (552)
|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence 556666666665555555555566666666666665433334455566666666666655 4555555555566666666
Q ss_pred cccce
Q 047285 490 NKLNA 494 (552)
Q Consensus 490 n~l~~ 494 (552)
|++..
T Consensus 205 Np~~C 209 (290)
T 1p9a_G 205 NPWLC 209 (290)
T ss_dssp CCBCC
T ss_pred CCccC
Confidence 65543
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.7e-24 Score=211.16 Aligned_cols=261 Identities=21% Similarity=0.232 Sum_probs=166.9
Q ss_pred EEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcc-ccccccCCC-CccEEeccCccccccCchhhhcc-----cC
Q 047285 234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQ-YGSWVFGLR-NLVFIDLSSNQFQGQIPIGLRNL-----TS 306 (552)
Q Consensus 234 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~~ 306 (552)
.++++.|.+++.+|..+...++|++|++++|.+++..+. ....+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356777777777776666666788888888877766541 001455666 78888888888776666666654 77
Q ss_pred CcEEeccCCCCCCCCCccC----CCC-CCCCEEEccCccceeecCcc---ccCC-CCccCEEeCCCCCCCCCCCchhHhh
Q 047285 307 LRHLDLRFNYFNSTTPGWL----SKF-NDLEFLSVAWNSLQGTISSV---GLEN-LTSIETLDLSGNSKLGGKIPTSFAR 377 (552)
Q Consensus 307 L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~---~l~~-l~~L~~L~l~~n~~l~~~~~~~~~~ 377 (552)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+.. .+.. .++|++|++++|. +++..+..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 8888888887776655433 333 67777777777776433221 1223 3577777777776 65444433322
Q ss_pred cccCceeecccccCCCCCccccccccccCC-CCCCEEEccCCcCcccCchhhc----CC-CCCcEEECCCCcccCC----
Q 047285 378 LCKLTSVDLSLIDLSQDFSQVLDTFSSCGA-YALESLDLSICQISGHLTNQLL----QF-KSLHTLELGHNSLFGP---- 447 (552)
Q Consensus 378 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~~~~~~~~~l~----~l-~~L~~L~L~~n~l~~~---- 447 (552)
.- ... ++|++|++++|.+++..+..+. .+ ++|++|++++|++++.
T Consensus 161 ~l-------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 161 IL-------------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp HH-------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HH-------------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 10 011 2688888888888776654433 34 5888888888888753
Q ss_pred CcccccC-CCCCCEEeCCCCcCCccCc----ccccCCCCCCeeeCCCcccceecCH------HhhhcCCCCCEEEccCCe
Q 047285 448 LPPALGE-LSSLKKLDLSNNMLNGFIP----LSLGKLSHLEYLDLSNNKLNASLSE------IHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 448 ~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~ 516 (552)
++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|+
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3444444 3578888888888875433 3345677888888888874322111 034566777788888888
Q ss_pred eeEE
Q 047285 517 LILK 520 (552)
Q Consensus 517 ~~~~ 520 (552)
+...
T Consensus 296 l~~~ 299 (362)
T 3goz_A 296 IHPS 299 (362)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 7655
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.1e-23 Score=207.59 Aligned_cols=259 Identities=21% Similarity=0.213 Sum_probs=173.6
Q ss_pred EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC----CcccCCC-CCceeecCCCCCCCCCccccccccCC---
Q 047285 209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP----LLSANFS-SLKALHLAINNFDNSLFQYGSWVFGL--- 280 (552)
Q Consensus 209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~l--- 280 (552)
++++.|.+++ .++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+. .+..+
T Consensus 3 ~~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD---ELVQILAA 77 (362)
T ss_dssp EECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH---HHHHHHHT
T ss_pred cccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH---HHHHHHhc
Confidence 3455555554 344445555557777777777666655 5555666 677777777776665444 33332
Q ss_pred --CCccEEeccCccccccCchhhhc----c-cCCcEEeccCCCCCCCCCccC----CC-CCCCCEEEccCccceeecCcc
Q 047285 281 --RNLVFIDLSSNQFQGQIPIGLRN----L-TSLRHLDLRFNYFNSTTPGWL----SK-FNDLEFLSVAWNSLQGTISSV 348 (552)
Q Consensus 281 --~~L~~L~L~~n~~~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~ 348 (552)
++|++|++++|.+++..+..+.. + ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 78888888888887666654443 3 788888888888876655443 33 358888888888887422211
Q ss_pred ---ccCCCC-ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCC-CCCCEEEccCCcCccc
Q 047285 349 ---GLENLT-SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA-YALESLDLSICQISGH 423 (552)
Q Consensus 349 ---~l~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~~~~~ 423 (552)
.+...+ +|++|++++|. +++..+..+...- ... ++|++|++++|.+++.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l-------------------------~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNN-LASKNCAELAKFL-------------------------ASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHH-------------------------HTSCTTCCEEECTTSCGGGS
T ss_pred HHHHHhcCCccccEeeecCCC-CchhhHHHHHHHH-------------------------HhCCCCCCEEECCCCCCChh
Confidence 134444 89999999997 7777766655431 012 2788999999988863
Q ss_pred ----CchhhcC-CCCCcEEECCCCcccCCCc----ccccCCCCCCEEeCCCCcCCcc-------CcccccCCCCCCeeeC
Q 047285 424 ----LTNQLLQ-FKSLHTLELGHNSLFGPLP----PALGELSSLKKLDLSNNMLNGF-------IPLSLGKLSHLEYLDL 487 (552)
Q Consensus 424 ----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L 487 (552)
++..+.. .++|++|++++|++++..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 3445555 4589999999999886544 3446778899999999985432 3345677888999999
Q ss_pred CCcccceecCH
Q 047285 488 SNNKLNASLSE 498 (552)
Q Consensus 488 ~~n~l~~~~~~ 498 (552)
++|++.+..+.
T Consensus 292 ~~N~l~~~~~~ 302 (362)
T 3goz_A 292 NGKEIHPSHSI 302 (362)
T ss_dssp TSCBCCGGGCH
T ss_pred CCCcCCCcchH
Confidence 99998776554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7.1e-24 Score=213.09 Aligned_cols=249 Identities=20% Similarity=0.207 Sum_probs=123.6
Q ss_pred ccCCCCccEEeccCccccccCc----hhhhcccCCcEEeccCCC---CCCCCCccC-------CCCCCCCEEEccCccce
Q 047285 277 VFGLRNLVFIDLSSNQFQGQIP----IGLRNLTSLRHLDLRFNY---FNSTTPGWL-------SKFNDLEFLSVAWNSLQ 342 (552)
Q Consensus 277 ~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---l~~~~~~~l-------~~l~~L~~L~l~~n~l~ 342 (552)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3344555555555555544322 223445555555555532 222333222 45556666666666555
Q ss_pred e----ecCccccCCCCccCEEeCCCCCCCCCCCchhHhhc-ccCceeecccccCCCCCccccccccccCCCCCCEEEccC
Q 047285 343 G----TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417 (552)
Q Consensus 343 ~----~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~ 417 (552)
+ .++.. +..+++|+.|++++|. +++..+..+... ..+....+. ...++|++|++++
T Consensus 108 ~~~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~-----------------~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 108 PTAQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKA-----------------KNAPPLRSIICGR 168 (386)
T ss_dssp TTTHHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHH-----------------HTCCCCCEEECCS
T ss_pred HHHHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhc-----------------ccCCCCcEEECCC
Confidence 4 23333 4556666666666665 443333332221 000000000 0002566666666
Q ss_pred CcCc-ccCc---hhhcCCCCCcEEECCCCcccC-----CCcccccCCCCCCEEeCCCCcCC----ccCcccccCCCCCCe
Q 047285 418 CQIS-GHLT---NQLLQFKSLHTLELGHNSLFG-----PLPPALGELSSLKKLDLSNNMLN----GFIPLSLGKLSHLEY 484 (552)
Q Consensus 418 n~~~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~ 484 (552)
|.++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 6665 2222 344455666666666666552 12224555666666666666664 345555556666666
Q ss_pred eeCCCccccee----cCHHhhhc--CCCCCEEEccCCeeeE----EcCCCC-cCcccccEEecCCCCCCCCC
Q 047285 485 LDLSNNKLNAS----LSEIHFVN--LTKLTWFSASGNSLIL----KFNPNW-VPPFQLETLQLRSCHLGPHF 545 (552)
Q Consensus 485 L~L~~n~l~~~----~~~~~~~~--l~~L~~L~L~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~~~~~i 545 (552)
|+|++|.+++. ++. .+.. +++|++|+|++|++.+ .+|..+ ..+++|+.|++++|++++..
T Consensus 249 L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66666666543 233 3322 5666666666666665 244444 33556666666666666544
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.4e-23 Score=204.10 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=110.9
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCC--CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC-CccccccccCC
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSL--PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS-LFQYGSWVFGL 280 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~l 280 (552)
..++.++++++.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++. .+..+
T Consensus 47 ~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~---~~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG---ILSQC 117 (336)
T ss_dssp TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH---HHTTB
T ss_pred hhheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH---HHhhC
Confidence 358899999988763 233344 7899999999999888776 45789999999999998765 555 67789
Q ss_pred CCccEEeccCccccccCchhhhcccCCcEEeccCC-CCCCC-CCccCCCCCCCCEEEccCc-cceee-cCccccCCCC-c
Q 047285 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFN-YFNST-TPGWLSKFNDLEFLSVAWN-SLQGT-ISSVGLENLT-S 355 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~l~~l~-~ 355 (552)
++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.. +..++ +
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~ 196 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSET 196 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTT
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccC
Confidence 99999999999999888889999999999999999 56542 3444455556666666655 55432 2222 44445 5
Q ss_pred cCEEeCCCC
Q 047285 356 IETLDLSGN 364 (552)
Q Consensus 356 L~~L~l~~n 364 (552)
|++|++++|
T Consensus 197 L~~L~l~~~ 205 (336)
T 2ast_B 197 ITQLNLSGY 205 (336)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeCCC
Confidence 555555555
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=193.97 Aligned_cols=226 Identities=19% Similarity=0.104 Sum_probs=137.0
Q ss_pred CCccEEeccCccccccCch---hhhcccCCcEEeccCCCCCCCCCccC--CCCCCCCEEEccCccceeecC---ccccCC
Q 047285 281 RNLVFIDLSSNQFQGQIPI---GLRNLTSLRHLDLRFNYFNSTTPGWL--SKFNDLEFLSVAWNSLQGTIS---SVGLEN 352 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~---~~~l~~ 352 (552)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3455666666555422111 12234557777777777777666666 667777777777777765433 122445
Q ss_pred CCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc--C--chhh
Q 047285 353 LTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH--L--TNQL 428 (552)
Q Consensus 353 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~--~~~l 428 (552)
+++|++|++++|. +.+..+..+..++ +|++|++++|++.+. + +..+
T Consensus 144 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 144 KPGLKVLSIAQAH-SPAFSCEQVRAFP-----------------------------ALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CSCCCEEEEECCS-SCCCCTTSCCCCT-----------------------------TCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCEEEeeCCC-cchhhHHHhccCC-----------------------------CCCEEECCCCCCccchhhhHHHhh
Confidence 6777777777776 6555555444443 666777777765542 1 1223
Q ss_pred cCCCCCcEEECCCCcccCCCcc----cccCCCCCCEEeCCCCcCCccCcccccCC---CCCCeeeCCCcccceecCHHhh
Q 047285 429 LQFKSLHTLELGHNSLFGPLPP----ALGELSSLKKLDLSNNMLNGFIPLSLGKL---SHLEYLDLSNNKLNASLSEIHF 501 (552)
Q Consensus 429 ~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~ 501 (552)
..+++|++|++++|+++ .++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|. .+
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GL 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hh
Confidence 45667777777777765 2222 23566777777777777776656555554 57777777777775 5555 23
Q ss_pred hcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 502 VNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 502 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
.++|++|++++|++.+. | .+..+++|+.|++++|++++
T Consensus 271 --~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 --PAKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --CSCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred --cCCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence 26777777777777643 2 24556777777777777764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=5.4e-21 Score=179.88 Aligned_cols=191 Identities=24% Similarity=0.289 Sum_probs=128.2
Q ss_pred CCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCccc
Q 047285 68 DCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYL 147 (552)
Q Consensus 68 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~ 147 (552)
+|+.|.|.+|.. ..+.+++++. .+. .+|..+. +.+++|++++|.+.+. .+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~--------------------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~ 55 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGK--------------------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATF 55 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTC--------------------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTT
T ss_pred cCCCCCceEcCC---CCeEEecCCC--------------------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHh
Confidence 688999999953 2345777763 333 4555444 6899999999999974 66788
Q ss_pred CCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcC
Q 047285 148 GSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227 (552)
Q Consensus 148 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~ 227 (552)
+.+++|++|++++|++++..|..+.++++|++|++++|.++.++... +..+++|++|++++|.++..+ +..+.
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~--~~~~~ 128 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLP--SGVFD 128 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCC--TTTTT
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcC--hhHhc
Confidence 99999999999999999877778899999999999999887665332 556667777777777666531 22345
Q ss_pred CCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccc
Q 047285 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG 295 (552)
Q Consensus 228 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 295 (552)
.+++|++|++++|.+.+.++..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBCT
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCceeC
Confidence 566666666666666655555555555555555555555544443 34444555555555555443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.3e-21 Score=186.13 Aligned_cols=194 Identities=24% Similarity=0.350 Sum_probs=155.7
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
..++++|++|++++|.+.. +| .+..+++|++|++++|++++ ++. +.++++|++|++++|.++.++ .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-------~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-------AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-------hhc
Confidence 5678999999999999984 55 58889999999999999985 444 999999999999999887653 478
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.+++|++|++++|.+...+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.. .+..++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-----~l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-----PLANLS 173 (308)
T ss_dssp TCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGTTCT
T ss_pred CCCCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-----hhcCCC
Confidence 8999999999999988743 26788999999999998887665 777888888888888777533 256778
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 342 (552)
+|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 88888888888775432 6777888888888888776543 677778888888887776
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.4e-21 Score=189.62 Aligned_cols=191 Identities=25% Similarity=0.389 Sum_probs=91.9
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCCEE
Confidence 4455555555555442 22 34555555555555555544332 4555555555555555542 22 14555555555
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L 439 (552)
++++|. +++ ++. +..+ ++|++|++++|.+++..+ +..+++|+.|++
T Consensus 113 ~l~~n~-l~~-~~~-l~~l-----------------------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 158 (308)
T 1h6u_A 113 DLTSTQ-ITD-VTP-LAGL-----------------------------SNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158 (308)
T ss_dssp ECTTSC-CCC-CGG-GTTC-----------------------------TTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred ECCCCC-CCC-chh-hcCC-----------------------------CCCCEEECCCCccCcCcc--ccCCCCccEEEc
Confidence 555554 432 111 2222 245555555555543322 444555555555
Q ss_pred CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518 (552)
Q Consensus 440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 518 (552)
++|++++ ++. +..+++|++|++++|.+++. +. +..+++|++|++++|++++.. .+..+++|++|++++|+++
T Consensus 159 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 159 GNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEE
T ss_pred cCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeee
Confidence 5555542 222 45555555555555555432 21 444555555555555553322 1445555555555555554
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.7e-23 Score=208.87 Aligned_cols=245 Identities=20% Similarity=0.226 Sum_probs=127.1
Q ss_pred hhhhcCCCCCCCEEEcCCCCCCCCCC----CcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccC
Q 047285 222 WLLVTNSLPSLKVLKLTKCQLCHFPP----LLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297 (552)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 297 (552)
+...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+.+.+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~------------------------~l~~~~ 79 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG------------------------RVKDEI 79 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT------------------------SCGGGS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC------------------------ccccch
Confidence 44455566777777777777665432 22445555566655554222 122222
Q ss_pred chhh-------hcccCCcEEeccCCCCCC----CCCccCCCCCCCCEEEccCccceeecCcc---ccCCC---------C
Q 047285 298 PIGL-------RNLTSLRHLDLRFNYFNS----TTPGWLSKFNDLEFLSVAWNSLQGTISSV---GLENL---------T 354 (552)
Q Consensus 298 ~~~l-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~l~~l---------~ 354 (552)
|..+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+.. .+..+ +
T Consensus 80 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 80 PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 2222 344555555555555544 23334444555555555555543221111 01122 6
Q ss_pred ccCEEeCCCCCCCC-CCCch---hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc-----cCc
Q 047285 355 SIETLDLSGNSKLG-GKIPT---SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG-----HLT 425 (552)
Q Consensus 355 ~L~~L~l~~n~~l~-~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-----~~~ 425 (552)
+|+.|++++|. ++ +.++. .+..++ +|++|++++|.++. ..+
T Consensus 160 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~-----------------------------~L~~L~L~~n~l~~~g~~~l~~ 209 (386)
T 2ca6_A 160 PLRSIICGRNR-LENGSMKEWAKTFQSHR-----------------------------LLHTVKMVQNGIRPEGIEHLLL 209 (386)
T ss_dssp CCCEEECCSSC-CTGGGHHHHHHHHHHCT-----------------------------TCCEEECCSSCCCHHHHHHHHH
T ss_pred CCcEEECCCCC-CCcHHHHHHHHHHHhCC-----------------------------CcCEEECcCCCCCHhHHHHHHH
Confidence 66777777766 44 23331 222332 56666666666552 222
Q ss_pred hhhcCCCCCcEEECCCCccc----CCCcccccCCCCCCEEeCCCCcCCcc----Cccccc--CCCCCCeeeCCCcccce-
Q 047285 426 NQLLQFKSLHTLELGHNSLF----GPLPPALGELSSLKKLDLSNNMLNGF----IPLSLG--KLSHLEYLDLSNNKLNA- 494 (552)
Q Consensus 426 ~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~- 494 (552)
..+..+++|+.|+|++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .+++|++|+|++|.+++
T Consensus 210 ~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 35556666666666666664 34555566666666666666666543 344442 26666666666666655
Q ss_pred ---ecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285 495 ---SLSEIHFVNLTKLTWFSASGNSLILK 520 (552)
Q Consensus 495 ---~~~~~~~~~l~~L~~L~L~~n~~~~~ 520 (552)
.+|.....++++|++|++++|++.+.
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 35552224566666666666666543
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=189.31 Aligned_cols=207 Identities=22% Similarity=0.220 Sum_probs=121.0
Q ss_pred CCCCCEEEcCCCCCCCCCCCcc--cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285 229 LPSLKVLKLTKCQLCHFPPLLS--ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306 (552)
Q Consensus 229 ~~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 306 (552)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+... ...+..+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-----------------------~~~~~~~~~ 146 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-----------------------ELQQWLKPG 146 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-----------------------HHHTTBCSC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-----------------------HHHhhhccC
Confidence 3557777777777776666554 455555555555555443222100 022335666
Q ss_pred CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceee--c-CccccCCCCccCEEeCCCCCCCCCCCchh----Hhhcc
Q 047285 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT--I-SSVGLENLTSIETLDLSGNSKLGGKIPTS----FARLC 379 (552)
Q Consensus 307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~~l~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~ 379 (552)
|++|++++|.+.+..+..+..+++|++|++++|++.+. + +...+..+++|++|++++|. ++ .++.. +..+
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~l~~~~~~l~~~l- 223 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-ME-TPTGVCAALAAAG- 223 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CC-CHHHHHHHHHHHT-
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CC-chHHHHHHHHhcC-
Confidence 77777777777666666666777777777777765542 1 12223566777777777776 43 22221 1222
Q ss_pred cCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCC---CCCcEEECCCCcccCCCcccccCCC
Q 047285 380 KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF---KSLHTLELGHNSLFGPLPPALGELS 456 (552)
Q Consensus 380 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~ 456 (552)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. +
T Consensus 224 ----------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~ 272 (310)
T 4glp_A 224 ----------------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A 272 (310)
T ss_dssp ----------------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S
T ss_pred ----------------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C
Confidence 267777777777776656555554 46777777777766 5555543 5
Q ss_pred CCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccce
Q 047285 457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494 (552)
Q Consensus 457 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 494 (552)
+|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 273 ~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 273 KLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 667777777766642 32 4556666666666666643
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.8e-21 Score=179.55 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=127.0
Q ss_pred CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCc-CCCCCccccCCCCCCCEEeccC-CCCCCCccccCCccccCCC
Q 047285 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAK-FAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~l 203 (552)
++|++|++++|.+++. .+..++.+++|++|++++|+ ++...+..+.++++|++|++++ |.++.++... +..+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-----f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS-----EECC
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH-----hCCC
Confidence 3899999999999853 34578899999999999997 7755556788999999999998 8887665332 6677
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCC---EEEcCCC-CCCCCCCCcccCCCCCc-eeecCCCCCCCCCcccccccc
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLK---VLKLTKC-QLCHFPPLLSANFSSLK-ALHLAINNFDNSLFQYGSWVF 278 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~ 278 (552)
++|++|++++|.+++.+. +..+++|+ +|++++| .+.+.++..+..+++|+ .|++++|.++ .++. ...
T Consensus 105 ~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~---~~~ 176 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---YAF 176 (239)
T ss_dssp TTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---TTT
T ss_pred CCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---hhc
Confidence 888888888887776432 55566666 7777777 77766666666666666 6666666655 2222 111
Q ss_pred CCCCccEEeccCcc-ccccCchhhhcc-cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285 279 GLRNLVFIDLSSNQ-FQGQIPIGLRNL-TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338 (552)
Q Consensus 279 ~l~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 338 (552)
..++|++|++++|+ +++..+..+..+ ++|++|++++|.+++..+. .+++|+.|++++
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 22455555555553 543334445555 5555555555555432221 334444444443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=9.4e-21 Score=178.22 Aligned_cols=181 Identities=25% Similarity=0.284 Sum_probs=150.1
Q ss_pred cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCcee
Q 047285 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSV 384 (552)
Q Consensus 305 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l 384 (552)
...++++++++.++. +|..+. ++++.|++++|.+++..+.. +..+++|++|++++|. +++..+..+..++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~----- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT----- 83 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTTTTTTCT-----
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCc-CCccCHhHhccCC-----
Confidence 457789999998875 444443 68999999999998655544 8899999999999998 7766665555554
Q ss_pred ecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCC
Q 047285 385 DLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS 464 (552)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 464 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 84 ------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 84 ------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp ------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 89999999999998888888899999999999999997666678889999999999
Q ss_pred CCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285 465 NNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK 520 (552)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 520 (552)
+|.+++..+..+..+++|++|+|++|++++..+. .+..+++|++|++++|++.+.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEeeCCceeCC
Confidence 9999866666788999999999999999765554 788899999999999999866
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.4e-20 Score=167.80 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=115.7
Q ss_pred CCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCC
Q 047285 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLY 204 (552)
Q Consensus 125 l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~ 204 (552)
.++|++|++++|.+++. .+..++.+++|++|++++|++++..+..+.++++|++|++++|.++.++... +..++
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-----FDKLT 100 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH-----hcCcc
Confidence 45899999999999863 4556789999999999999998666666789999999999999887655322 56777
Q ss_pred CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285 205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284 (552)
Q Consensus 205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~ 284 (552)
+|++|++++|.+... .+..+..+++|++|++++|.+++.++..+..+++|+.|++++|.+. ..+++|+
T Consensus 101 ~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----------~~~~~l~ 168 (208)
T 2o6s_A 101 QLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----------CTCPGIR 168 (208)
T ss_dssp TCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----------CCTTTTH
T ss_pred CCCEEEcCCCcCccc--CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----------cCCCCHH
Confidence 777777777777653 2233566777777777777777666666666666666666666433 2344566
Q ss_pred EEeccCccccccCchhhhccc
Q 047285 285 FIDLSSNQFQGQIPIGLRNLT 305 (552)
Q Consensus 285 ~L~L~~n~~~~~~~~~l~~l~ 305 (552)
.|+++.|.++|.+|..++.++
T Consensus 169 ~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 169 YLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHhCCceeeccCcccc
Confidence 666666666666665555443
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.2e-20 Score=176.11 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=97.4
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCEEEccC-ccceeecCccccCCCCccCEE
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEFLSVAW-NSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~l~~L~~L 359 (552)
+|++|++++|.+++..+..+..+++|++|++++|. +++..+..+.++++|++|++++ |.++ .++...+..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 45555555555554444455555555555555554 4444444555555555555555 5555 3333225555555555
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCC---EEEccCC-cCcccCchhhcCCCCCc
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALE---SLDLSIC-QISGHLTNQLLQFKSLH 435 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~~~~~~~~~l~~l~~L~ 435 (552)
++++|. +++ +|. +..++ +|+ +|++++| .+++..+..+..+++|+
T Consensus 111 ~l~~n~-l~~-lp~-~~~l~-----------------------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 111 GIFNTG-LKM-FPD-LTKVY-----------------------------STDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EEEEEC-CCS-CCC-CTTCC-----------------------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred eCCCCC-Ccc-ccc-ccccc-----------------------------ccccccEEECCCCcchhhcCcccccchhcce
Confidence 555554 432 332 22222 233 5556555 55554444555555555
Q ss_pred -EEECCCCcccCCCcccccCCCCCCEEeCCCCc-CCccCcccccCC-CCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285 436 -TLELGHNSLFGPLPPALGELSSLKKLDLSNNM-LNGFIPLSLGKL-SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512 (552)
Q Consensus 436 -~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 512 (552)
.|++++|+++ .+|......++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|. ..+++|+.|++
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~---~~~~~L~~L~l 233 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS---KGLEHLKELIA 233 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC---TTCTTCSEEEC
T ss_pred eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh---hHhccCceeec
Confidence 5666555555 333322222455555555553 543334445555 55555555555553 2332 13445555555
Q ss_pred cCC
Q 047285 513 SGN 515 (552)
Q Consensus 513 ~~n 515 (552)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.7e-20 Score=166.42 Aligned_cols=193 Identities=21% Similarity=0.212 Sum_probs=109.8
Q ss_pred cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecc
Q 047285 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387 (552)
Q Consensus 308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~ 387 (552)
+.++.+++.++.. |..+ .++|++|++++|.++ .++...+..+++|++|++++|. +++..+..+..++
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-------- 76 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLT-------- 76 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT--------
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCc-cCccChhhcCCCC--------
Confidence 4566666665543 2222 346677777777666 3333335666667777776665 5433333333332
Q ss_pred cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285 388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467 (552)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 467 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 77 ---------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 77 ---------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 56666666666665555555666666666666666665444455666666666666666
Q ss_pred CCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
+++..+..+..+++|++|++++|++.+ .+++|++|+++.|+++|.+|..+..+.. +...|...|..+
T Consensus 136 l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 136 LKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred cceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence 664444445666666666666665543 2345556666666666666655554433 444454444433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.3e-19 Score=188.61 Aligned_cols=212 Identities=21% Similarity=0.266 Sum_probs=156.4
Q ss_pred CCCCCCCCCCc-----ccCce-EecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeC
Q 047285 60 ASWNTGDGDCC-----KWAGV-FCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL 133 (552)
Q Consensus 60 ~~W~~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 133 (552)
.+|.. +.++| .|.|+ .|. .++++.|++++. .+.+ +|..+ +++|++|++
T Consensus 34 ~~W~~-~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n--------------------~L~~-lp~~l--~~~L~~L~L 87 (571)
T 3cvr_A 34 DKWEK-QALPGENRNEAVSLLKECL--INQFSELQLNRL--------------------NLSS-LPDNL--PPQITVLEI 87 (571)
T ss_dssp HHHHT-TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSS--------------------CCSC-CCSCC--CTTCSEEEC
T ss_pred HHHhc-cCCccccccchhhhccccc--cCCccEEEeCCC--------------------CCCc-cCHhH--cCCCCEEEC
Confidence 34654 34556 79999 786 357999999883 6665 67666 388999999
Q ss_pred CCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCC
Q 047285 134 SGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ 213 (552)
Q Consensus 134 s~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~ 213 (552)
++|.++ .+| +.+++|++|++++|++++ +|. +.+ +|++|++++|.++.+|. .+++|+.|++++
T Consensus 88 s~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 88 TQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---------LPALLEYINADN 149 (571)
T ss_dssp CSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---------CCTTCCEEECCS
T ss_pred cCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---------cCccccEEeCCC
Confidence 999999 477 557999999999999996 777 665 99999999998887552 578899999999
Q ss_pred CcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccc-cCCCCccEEeccCcc
Q 047285 214 MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV-FGLRNLVFIDLSSNQ 292 (552)
Q Consensus 214 n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~L~L~~n~ 292 (552)
|.+++.+. .+++|++|++++|.+++.++ +. ++|+.|++++|.++. +|.+...+ ...+.|+.|++++|.
T Consensus 150 N~l~~lp~------~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 150 NQLTMLPE------LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SCCSCCCC------CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS-CCCCC--------CCEEEECCSSC
T ss_pred CccCcCCC------cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc-hhhHHHhhhcccccceEEecCCCc
Confidence 99887543 56889999999999888554 44 788888888888873 33321100 011222888888888
Q ss_pred ccccCchhhhcccCCcEEeccCCCCCCCCCccCCC
Q 047285 293 FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSK 327 (552)
Q Consensus 293 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 327 (552)
++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77 56777777888888888888887766655543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.3e-19 Score=185.51 Aligned_cols=186 Identities=23% Similarity=0.311 Sum_probs=133.7
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEEC
Confidence 77888888887775 55544 367888888888777 344 346778888888887775 555 333 7788888
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
++|. +++ +|. .+ ++|++|++++|.+++ +|. .+++|+.|++++
T Consensus 128 s~N~-l~~-lp~---~l-----------------------------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 128 DNNQ-LTM-LPE---LP-----------------------------ALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CSSC-CSC-CCC---CC-----------------------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCCc-CCC-CCC---cC-----------------------------ccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 8876 554 333 12 378888888888886 444 567888888888
Q ss_pred CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCC-------CeeeCCCcccceecCHHhhhcCCCCCEEEccC
Q 047285 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHL-------EYLDLSNNKLNASLSEIHFVNLTKLTWFSASG 514 (552)
Q Consensus 442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 514 (552)
|++++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|+++ .+|. .+..+++|+.|+|++
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIILED 239 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEECCS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEeeC
Confidence 88885 666 55 78888888888888 6666 543 66 88888888885 5777 566688888888888
Q ss_pred CeeeEEcCCCCcC
Q 047285 515 NSLILKFNPNWVP 527 (552)
Q Consensus 515 n~~~~~~~~~~~~ 527 (552)
|++++..|..+..
T Consensus 240 N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 240 NPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CcCCCcCHHHHHH
Confidence 8888777765544
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.5e-18 Score=158.96 Aligned_cols=164 Identities=23% Similarity=0.203 Sum_probs=122.9
Q ss_pred CCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCC
Q 047285 61 SWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEG 140 (552)
Q Consensus 61 ~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 140 (552)
.|.. +...|.|.+|.|.. . -.+.+|..+. ++|++|++++|.+++
T Consensus 11 ~~~~-~~~~Cs~~~v~c~~--~-------------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~ 54 (229)
T 3e6j_A 11 AACP-SQCSCSGTTVDCRS--K-------------------------------RHASVPAGIP--TNAQILYLHDNQITK 54 (229)
T ss_dssp CCCC-TTCEEETTEEECTT--S-------------------------------CCSSCCSCCC--TTCSEEECCSSCCCC
T ss_pred ccCC-CCCEEeCCEeEccC--C-------------------------------CcCccCCCCC--CCCCEEEcCCCccCc
Confidence 3444 56889999999963 1 1223444333 889999999999997
Q ss_pred CccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCc
Q 047285 141 IQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKAS 220 (552)
Q Consensus 141 ~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~ 220 (552)
. .|..+..+++|++|+|++|++....+..+.++++|++|++++|.++.++... +..+++|++|++++|.+..
T Consensus 55 ~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~~-- 126 (229)
T 3e6j_A 55 L-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-----FDRLVHLKELFMCCNKLTE-- 126 (229)
T ss_dssp C-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCS--
T ss_pred c-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH-----hCcchhhCeEeccCCcccc--
Confidence 4 6888999999999999999998655566789999999999999888765432 5678888888888888775
Q ss_pred chhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC
Q 047285 221 DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS 269 (552)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 269 (552)
++..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+...
T Consensus 127 -lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 127 -LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred -cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 345556777778888877777777666666666666666666665543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.1e-18 Score=170.45 Aligned_cols=132 Identities=16% Similarity=0.064 Sum_probs=58.2
Q ss_pred CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE-EeccCccccccCchhhhcccCCcE
Q 047285 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF-IDLSSNQFQGQIPIGLRNLTSLRH 309 (552)
Q Consensus 231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~l~~l~~L~~ 309 (552)
++++|++++|+++..++..|.++++|++|++++|.+.+.++.. .+.+++++++ +.++.|+++...|..|..+++|++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT--SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh--HhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3444444444444444444444444444444444443333221 2334444433 333344444444444555555555
Q ss_pred EeccCCCCCCCCCccCCCCCCCCEEEccCc-cceeecCccccCCCC-ccCEEeCCCCC
Q 047285 310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWN-SLQGTISSVGLENLT-SIETLDLSGNS 365 (552)
Q Consensus 310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~l~-~L~~L~l~~n~ 365 (552)
|++++|.++...+..+....++..+++.++ .+. .++...+..+. .++.|++++|.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence 555555555444444444444455555432 222 33333233332 34555555554
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=9.8e-19 Score=172.88 Aligned_cols=241 Identities=16% Similarity=0.096 Sum_probs=161.8
Q ss_pred ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCE-E
Q 047285 257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEF-L 334 (552)
Q Consensus 257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L 334 (552)
+.++.++++++.. |. .+ .+++++|+|++|+++...+..|..+++|++|++++|.+.+.++ ..|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~i-P~---~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PS---DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSC-CT---TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCcc-Cc---Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4455666665532 32 22 3567777777777774444567777777777777777665443 45666766664 4
Q ss_pred EccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEE
Q 047285 335 SVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414 (552)
Q Consensus 335 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 414 (552)
.+..|+++ .++...+..+++|+.|++++|. +....+..+. ....+..++
T Consensus 86 ~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~-----------------------------~~~~l~~l~ 134 (350)
T 4ay9_X 86 IEKANNLL-YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKI-----------------------------HSLQKVLLD 134 (350)
T ss_dssp EEEETTCC-EECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTC-----------------------------CBSSCEEEE
T ss_pred cccCCccc-ccCchhhhhccccccccccccc-cccCCchhhc-----------------------------ccchhhhhh
Confidence 44556666 3433337777777777777776 5433322222 223677788
Q ss_pred ccC-CcCcccCchhhcCCC-CCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcc-cccCCCCCCeeeCCCcc
Q 047285 415 LSI-CQISGHLTNQLLQFK-SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL-SLGKLSHLEYLDLSNNK 491 (552)
Q Consensus 415 ls~-n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~ 491 (552)
+.+ +.+....+..+..+. .++.|++++|+++ .++......++|+++++++|+..+.+|. .|..+++|++|++++|+
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred hccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 865 466655555666654 6899999999998 5555555678899999987554446664 57899999999999999
Q ss_pred cceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC
Q 047285 492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH 540 (552)
Q Consensus 492 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 540 (552)
++ .+|. ..+.+|+.|.+.++.-...+| .+..+.+|+.+++.++.
T Consensus 214 l~-~lp~---~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 214 IH-SLPS---YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CC-CCCS---SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cC-ccCh---hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 95 5664 345677778777776566676 57788899999997653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.1e-18 Score=161.94 Aligned_cols=173 Identities=25% Similarity=0.307 Sum_probs=118.1
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+.++++|++|++++|.+.. ++ .++.+++|++|++++|++++..+ +.++++|++|++++|.++.++ .+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-------~l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-------SLK 109 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-------GGT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-------hhc
Confidence 4567888888888888874 44 37778888888888888875433 888888888888888766532 366
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.+++|++|++++|.+... ..+..+++|++|++++|.+.+. . .+..++
T Consensus 110 ~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~---------------------------~l~~l~ 156 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--T---------------------------VLSRLT 156 (291)
T ss_dssp TCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--G---------------------------GGGGCT
T ss_pred cCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--h---------------------------hhccCC
Confidence 666777777777766653 2234455555555555554432 1 455667
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 343 (552)
+|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777777765433 67777777777777777653 2 36777788888888887763
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.4e-18 Score=164.21 Aligned_cols=171 Identities=26% Similarity=0.373 Sum_probs=97.5
Q ss_pred cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccC
Q 047285 278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIE 357 (552)
Q Consensus 278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 357 (552)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence 345666666666666653 22 35666666666666666665433 5666666666666666653 222 55666666
Q ss_pred EEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEE
Q 047285 358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTL 437 (552)
Q Consensus 358 ~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L 437 (552)
.|++++|. +++. ..+.. +++|++|++++|.+++. ..+..+++|+.|
T Consensus 116 ~L~L~~n~-i~~~--~~l~~-----------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 116 SLSLEHNG-ISDI--NGLVH-----------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp EEECTTSC-CCCC--GGGGG-----------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred EEECCCCc-CCCC--hhhcC-----------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 66666665 4321 12222 22566666666666543 345566666666
Q ss_pred ECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285 438 ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN 493 (552)
Q Consensus 438 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 493 (552)
++++|++++..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|+++
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCccc
Confidence 666666654322 5566666666666666653 332 555666666666666654
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.6e-17 Score=174.82 Aligned_cols=175 Identities=24% Similarity=0.292 Sum_probs=132.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+..+++|++|++++|.+.. ++ .++.+++|++|+|++|++.+..| +.++++|++|+|++|.+..++ .+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-------SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-------TST
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-------hhc
Confidence 5678888888998888874 44 47888899999999888886444 888888999999888876643 377
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..++
T Consensus 107 ~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~ 175 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-----LAGLT 175 (605)
T ss_dssp TCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-----GTTCT
T ss_pred cCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-----hccCC
Confidence 888888888888888764 2356778888888888888765 456777788888888777776543 55677
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT 321 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 321 (552)
+|+.|+|++|.+.+. + .+..+++|+.|++++|.+.+..
T Consensus 176 ~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 788888888777653 3 4777777888888777776543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=151.24 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=108.7
Q ss_pred EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccc
Q 047285 309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL 388 (552)
Q Consensus 309 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~ 388 (552)
.+++++|.++. +|..+. +.+++|++++|.+++..+...+..+++|+.|++++|. +++..+..|..++
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGAS--------- 81 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCT---------
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCC---------
Confidence 55555555543 233222 3456666666666654444446667777777777776 5544444444443
Q ss_pred ccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285 389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML 468 (552)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 468 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 82 --------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 82 --------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp --------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred --------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 677778888887777777777888888888888888877777788888888888888888
Q ss_pred CccCcccccCCCCCCeeeCCCcccceecC
Q 047285 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLS 497 (552)
Q Consensus 469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 497 (552)
++..|..+..+++|++|++++|++.+..+
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 87777788888888888888888876554
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=151.85 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=129.1
Q ss_pred CEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCc-hhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285 332 EFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIP-TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410 (552)
Q Consensus 332 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L 410 (552)
+.+++++|.++ .+|.. + .+.++.|++++|. +++..+ ..|..+ ++|
T Consensus 14 ~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~-l~~~~~~~~~~~l-----------------------------~~L 59 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNE-FTVLEATGIFKKL-----------------------------PQL 59 (220)
T ss_dssp TEEECCSSCCS-SCCSC-C--CTTCSEEECCSSC-CCEECCCCCGGGC-----------------------------TTC
T ss_pred CEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCc-CCccCchhhhccC-----------------------------CCC
Confidence 57888888887 56654 3 3456889999987 665433 223443 389
Q ss_pred CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCc
Q 047285 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490 (552)
Q Consensus 411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 490 (552)
++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|+|++|
T Consensus 60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 99999999999888888999999999999999999877788999999999999999999888888999999999999999
Q ss_pred ccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 491 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
++++..|. .+..+++|++|++++|++.+.++
T Consensus 140 ~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 140 QITTVAPG-AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCBCTT-TTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCEECHH-HhcCCCCCCEEEecCcCCcCCCc
Confidence 99877676 78899999999999999987665
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.6e-18 Score=176.44 Aligned_cols=191 Identities=24% Similarity=0.344 Sum_probs=120.8
Q ss_pred CCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCE
Q 047285 254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEF 333 (552)
Q Consensus 254 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 333 (552)
..+..+.+..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 21 ~~l~~l~l~~~~i~~~~-----~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-----TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-----CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHhccCCCccccc-----chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 34445555555554433 23456777777777777763 33 46777777777777777766544 667777777
Q ss_pred EEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEE
Q 047285 334 LSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413 (552)
Q Consensus 334 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 413 (552)
|++++|.+.+ ++ .+..+++|+.|++++|. +.+ + +.+.. +++|+.|
T Consensus 92 L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~-l~~-l-~~l~~-----------------------------l~~L~~L 136 (605)
T 1m9s_A 92 LFLDENKIKD-LS--SLKDLKKLKSLSLEHNG-ISD-I-NGLVH-----------------------------LPQLESL 136 (605)
T ss_dssp EECCSSCCCC-CT--TSTTCTTCCEEECTTSC-CCC-C-GGGGG-----------------------------CTTCSEE
T ss_pred EECcCCCCCC-Ch--hhccCCCCCEEEecCCC-CCC-C-ccccC-----------------------------CCccCEE
Confidence 7777777763 33 26667777777777776 443 1 12222 2367777
Q ss_pred EccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN 493 (552)
Q Consensus 414 ~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 493 (552)
+|++|.+++. ..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|+++
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence 7777777654 456667777777777777765444 6667777777777777764 33 4666777777777777765
Q ss_pred e
Q 047285 494 A 494 (552)
Q Consensus 494 ~ 494 (552)
+
T Consensus 211 ~ 211 (605)
T 1m9s_A 211 N 211 (605)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.3e-17 Score=151.38 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=123.6
Q ss_pred cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecc
Q 047285 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387 (552)
Q Consensus 308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~ 387 (552)
+.++++++.++.. |..+. ++|+.|++++|.+++ ++...+..+++|+.|++++|. +++..|..|..++
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~-------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLR-------- 80 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCS--------
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCc--------
Confidence 5788888887754 44333 688999999999884 444448888999999999997 7766666665555
Q ss_pred cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285 388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467 (552)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 467 (552)
+|++|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|++|++++|.
T Consensus 81 ---------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 81 ---------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp ---------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 78889999999887666677888999999999999988778888888999999999999
Q ss_pred CCccCcccccCCCCCCeeeCCCcccceec
Q 047285 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASL 496 (552)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 496 (552)
+++..+..+..+++|++|++++|++....
T Consensus 140 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 140 LQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 88766777888889999999998886543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.2e-17 Score=161.77 Aligned_cols=178 Identities=29% Similarity=0.288 Sum_probs=136.2
Q ss_pred cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCC-CCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLS-KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362 (552)
Q Consensus 284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~ 362 (552)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. ++++|++|++++|++++ ++...+..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence 57888888887 4665543 5688999999999888777777 88999999999998884 443348888899999999
Q ss_pred CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285 363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442 (552)
Q Consensus 363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n 442 (552)
+|. +++..+..|..++ +|++|++++|.+++..+..|..+++|+.|+|++|
T Consensus 97 ~N~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQ-----------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SSC-CCEECTTTTTTCT-----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCc-CCcCCHHHhCCCc-----------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 987 6654444444443 7888999999988888888888899999999999
Q ss_pred cccCCCcccc---cCCCCCCEEeCCCCcCCccCcccccCCCC--CCeeeCCCccccee
Q 047285 443 SLFGPLPPAL---GELSSLKKLDLSNNMLNGFIPLSLGKLSH--LEYLDLSNNKLNAS 495 (552)
Q Consensus 443 ~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~ 495 (552)
++++..+..+ ..+++|+.|+|++|.+++..+..+..++. ++.|+|++|++...
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 8885433444 56888999999999888555556677776 47888988888654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=9.8e-17 Score=148.25 Aligned_cols=137 Identities=24% Similarity=0.161 Sum_probs=119.1
Q ss_pred CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
++|++|++++|.+++..+..+..+++|+.|+|++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 37999999999999888888999999999999999998655567789999999999999998766667888999999999
Q ss_pred CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
++|+++ .+|. .+..+++|++|++++|++.+..+..+..+.+|+.|++++|++.+..+
T Consensus 120 s~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999996 6777 68899999999999999986666678888999999999999987654
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1e-18 Score=188.56 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=13.0
Q ss_pred CcHHHHHHHHHhHhcCCCC-CCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCC
Q 047285 37 CIDSEREALLKLKQDLIDP-SNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNP 92 (552)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~-~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~ 92 (552)
..+.+++++.++..+...+ +..-..|.......+.|.++.++ ..+++++++.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n 183 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFAN 183 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCC
Confidence 5577889999998776422 23345676545567889998886 478999998764
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.3e-17 Score=162.59 Aligned_cols=176 Identities=24% Similarity=0.227 Sum_probs=130.2
Q ss_pred ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhh-cccCCcEEeccCCCCCCCCCccCCCCCCCCEEE
Q 047285 257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLR-NLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335 (552)
Q Consensus 257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 335 (552)
+.++++++.++.. |. .+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus 21 ~~l~c~~~~l~~i-P~---~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQ---SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSC-CS---SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCcc-Cc---cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 5777877777653 22 22 24578888888888876666666 788888888888888887777888888888888
Q ss_pred ccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285 336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415 (552)
Q Consensus 336 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 415 (552)
+++|++++ ++...+..+++|+.|++++|. +++..+..|..++ +|++|++
T Consensus 95 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~-----------------------------~L~~L~L 143 (361)
T 2xot_A 95 LSSNHLHT-LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMA-----------------------------QLQKLYL 143 (361)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT-----------------------------TCCEEEC
T ss_pred CCCCcCCc-CCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcc-----------------------------cCCEEEC
Confidence 88888874 444447888888888888887 6655555555444 7888888
Q ss_pred cCCcCcccCchhh---cCCCCCcEEECCCCcccCCCcccccCCCC--CCEEeCCCCcCC
Q 047285 416 SICQISGHLTNQL---LQFKSLHTLELGHNSLFGPLPPALGELSS--LKKLDLSNNMLN 469 (552)
Q Consensus 416 s~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~ 469 (552)
++|.+++..+..+ ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888886555444 56888888888888888555566777776 478888888876
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.2e-16 Score=146.64 Aligned_cols=152 Identities=20% Similarity=0.307 Sum_probs=117.9
Q ss_pred cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363 (552)
Q Consensus 284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~ 363 (552)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|++++..+.. +..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCC
Confidence 45677777666 4555443 67888888888888777777888888888888888888555555 88888888888888
Q ss_pred CCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc
Q 047285 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS 443 (552)
Q Consensus 364 n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 443 (552)
|. ++...+..|..++ +|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 90 N~-l~~l~~~~f~~l~-----------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLF-----------------------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp SC-CCCCCTTTTTTCT-----------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCccCHhHccCCC-----------------------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 87 6644333344443 78888999998888888888889999999999999
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 444 LFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 444 l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
+++..+..+..+++|++|++++|++.
T Consensus 140 l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 140 LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 98777777888999999999999876
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.7e-17 Score=146.77 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=52.2
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|...+.+| .+..+++|++|+++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 44455555555544444445555555555555555554444555555555555555554222333 34555555555555
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLI 518 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 518 (552)
+|++++ ++ .+..+++|++|++++|++.
T Consensus 168 ~n~i~~-~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 168 FDGVHD-YR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCCCC-CT--TGGGCSSCCEEEECBC---
T ss_pred CCCCcC-hH--HhccCCCCCEEEeeCcccC
Confidence 555533 22 2455555555555555543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.5e-17 Score=147.64 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=111.1
Q ss_pred CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 378888888886653 347888999999999999999878889999999999999999999888899999999999999
Q ss_pred CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543 (552)
Q Consensus 488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 543 (552)
++|+..+.++ .+..+++|++|++++|++.+ ++ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCccccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998446666 48999999999999999986 33 77889999999999999874
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.4e-19 Score=184.28 Aligned_cols=107 Identities=33% Similarity=0.447 Sum_probs=63.1
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
.|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35566666666654 343 556666666666666665 555566666666666666666653 44 55566666666666
Q ss_pred Ccccceec-CHHhhhcCCCCCEEEccCCeeeEEc
Q 047285 489 NNKLNASL-SEIHFVNLTKLTWFSASGNSLILKF 521 (552)
Q Consensus 489 ~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~ 521 (552)
+|++++.. |. .+..+++|+.|+|++|++.+..
T Consensus 517 ~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCc
Confidence 66665544 44 4566666666666666665443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=4.4e-20 Score=193.11 Aligned_cols=204 Identities=22% Similarity=0.171 Sum_probs=130.7
Q ss_pred cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCc-------------CCCCCccccCCCCCCCEEe-ccCCCCC
Q 047285 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAK-------------FAGMIPLQLGNLSNLQYLD-LSGTFLS 188 (552)
Q Consensus 123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-l~~n~l~ 188 (552)
..+++|+.|+|++|.++ .+|+.++.+++|+.|++++|. ..+.+|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 56788888888888887 678888888888888886664 4555666677777777776 4443221
Q ss_pred CCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCC
Q 047285 189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN 268 (552)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 268 (552)
.|+.+.++.|.+.. ++. ..|+.|++++|.+++.+ . +..+++|+.|++++|.++
T Consensus 424 ----------------~L~~l~l~~n~i~~---l~~-----~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 424 ----------------DLRSKFLLENSVLK---MEY-----ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp ----------------HHHHHHHHHHHHHH---HHH-----TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-
T ss_pred ----------------hhhhhhhhcccccc---cCc-----cCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-
Confidence 12222233333222 111 24777777777777643 3 667777777777777766
Q ss_pred CCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccceeecCc
Q 047285 269 SLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQGTISS 347 (552)
Q Consensus 269 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 347 (552)
.+|. .++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..+.
T Consensus 477 ~lp~---~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 477 ALPP---ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCCG---GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccch---hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 4444 66677777777777777774 55 6777777777777777777665 66777777777777777777644332
Q ss_pred c--ccCCCCccCEEe
Q 047285 348 V--GLENLTSIETLD 360 (552)
Q Consensus 348 ~--~l~~l~~L~~L~ 360 (552)
. .+..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 1 122356666664
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.6e-16 Score=150.10 Aligned_cols=170 Identities=21% Similarity=0.301 Sum_probs=108.8
Q ss_pred CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL 203 (552)
Q Consensus 124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 203 (552)
.+.++..++++++.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|++|++++|.++.++. +..+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-------l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-------LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-------hccC
Confidence 45566677777777774 34 4667777888888777776 344 56677777777777776655431 4455
Q ss_pred CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc
Q 047285 204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL 283 (552)
Q Consensus 204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 283 (552)
++|++|++++|.+++ .++... ++|+.|++++|.+++. . .+..+++|
T Consensus 85 ~~L~~L~L~~N~l~~--------------------------l~~~~~---~~L~~L~L~~N~l~~~--~---~l~~l~~L 130 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--------------------------LNGIPS---ACLSRLFLDNNELRDT--D---SLIHLKNL 130 (263)
T ss_dssp SSCCEEECCSSCCSC--------------------------CTTCCC---SSCCEEECCSSCCSBS--G---GGTTCTTC
T ss_pred CCCCEEECCCCccCC--------------------------cCcccc---CcccEEEccCCccCCC--h---hhcCcccc
Confidence 555555555555544 222111 4555555555555442 1 45567777
Q ss_pred cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343 (552)
Q Consensus 284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 343 (552)
++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 7777777777643 3 577778888888888877765 557777888888888887764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=5.8e-16 Score=146.19 Aligned_cols=152 Identities=20% Similarity=0.276 Sum_probs=123.0
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+..+++|++|++++|.++. ++ .++.+++|++|++++|++++. |. +.++++|++|++++|.++.++. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~-------~ 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNG-------I 103 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTT-------C
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCc-------c
Confidence 57899999999999999984 56 688999999999999999864 44 9999999999999999887653 2
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 280 (552)
.. ++|++|++++|.+++. ..+..+++|++|++++|.+++.. .+..+++|+.|++++|.+.+. . .+..+
T Consensus 104 ~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~---~l~~l 171 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--G---GLTRL 171 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--T---TSTTC
T ss_pred cc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--H---HhccC
Confidence 33 8999999999998874 24678889999999999887763 467777888888888777765 2 56667
Q ss_pred CCccEEeccCcccccc
Q 047285 281 RNLVFIDLSSNQFQGQ 296 (552)
Q Consensus 281 ~~L~~L~L~~n~~~~~ 296 (552)
++|+.|++++|.+.+.
T Consensus 172 ~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCEEEEEEEEEECC
T ss_pred CCCCEEeCCCCcccCC
Confidence 7777777777776644
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=9.3e-16 Score=137.50 Aligned_cols=132 Identities=22% Similarity=0.263 Sum_probs=77.8
Q ss_pred CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489 (552)
Q Consensus 411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 489 (552)
++++++++.++ .+|..+. .+|++|++++|++++..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666654 3443332 2566666666666544332 355666666666666666655566666666666666666
Q ss_pred cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
|++++..+. .+.++++|++|+|++|++.+..|..+..+.+|+.|++++|++.+..|
T Consensus 88 N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 666554444 45566666666666666666666666666666666666666665544
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=3.3e-17 Score=176.74 Aligned_cols=180 Identities=21% Similarity=0.142 Sum_probs=98.7
Q ss_pred CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccc
Q 047285 321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400 (552)
Q Consensus 321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 400 (552)
.+..+..+++|+.|++++|.+. .++.. +..+++|+.|+|++|. ++ .+|..++.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~--------------------- 270 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISAN-IFKYDFLTRLYLNGNS-LT-ELPAEIKNLS--------------------- 270 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGG-GGGCCSCSCCBCTTSC-CS-CCCGGGGGGT---------------------
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChh-hcCCCCCCEEEeeCCc-Cc-ccChhhhCCC---------------------
Confidence 3555666677777777777766 55555 4467777777777776 55 6666665555
Q ss_pred cccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCC
Q 047285 401 TFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS 480 (552)
Q Consensus 401 ~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 480 (552)
+|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.
T Consensus 271 --------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 271 --------NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp --------TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH
T ss_pred --------CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc
Confidence 6777888888777 56777777888888888888776 6777777888888888888888777776654432
Q ss_pred C-CCeeeCCCcccceecCHHhhhcCCCCCEEEccCC--------eeeEEcCCCCcCcccccEEecCCCCCC
Q 047285 481 H-LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN--------SLILKFNPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 481 ~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~~~ 542 (552)
. +..+++++|.+++.+|. .|+.|+++.| .+....+..+..+..+....+++|-+.
T Consensus 341 ~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 VTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred hhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 1 22367777777776664 4455666665 222333333444555666677777665
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.9e-16 Score=138.92 Aligned_cols=139 Identities=25% Similarity=0.218 Sum_probs=120.1
Q ss_pred CCCCCEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285 407 AYALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 407 ~~~L~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (552)
.++|++|++++|.++ +.+|..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 358999999999998 67888889999999999999999855 778999999999999999998788888889999999
Q ss_pred eCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC---CCCcCcccccEEecCCCCCCCCCCcc
Q 047285 486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN---PNWVPPFQLETLQLRSCHLGPHFPSW 548 (552)
Q Consensus 486 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~iP~~ 548 (552)
++++|++++......+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+. ++|+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999999664321268899999999999999985543 36778899999999999988 77764
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.5e-16 Score=155.76 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=135.5
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccc---eeecCccccCCCCcc
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL---QGTISSVGLENLTSI 356 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~l~~l~~L 356 (552)
+++|+.+++.+ .++..-...|..|++|+++++.+|.+....+..|..+.++..+....+.. ...+....+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666665 45444445566666677777766666655566666665555555443211 012222334455566
Q ss_pred C-EEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhh-cCCCCC
Q 047285 357 E-TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL-LQFKSL 434 (552)
Q Consensus 357 ~-~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-~~l~~L 434 (552)
+ .+.+.... .++..+.... ....+++.+.+.++-.. .....+ ..+++|
T Consensus 179 ~~~i~~~~~~----~l~~~~~~~~-------------------------~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L 228 (329)
T 3sb4_A 179 ETTIQVGAMG----KLEDEIMKAG-------------------------LQPRDINFLTIEGKLDN-ADFKLIRDYMPNL 228 (329)
T ss_dssp EEEEEECTTC----CHHHHHHHTT-------------------------CCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred ceeEEecCCC----cHHHHHhhcc-------------------------cCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence 6 45554432 3343332211 01124556665554221 112222 237788
Q ss_pred cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC-eeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE-YLDLSNNKLNASLSEIHFVNLTKLTWFSAS 513 (552)
Q Consensus 435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 513 (552)
+.++|++|+++...+.+|.++++|+++++.+| ++..-+..|.++++|+ .+++.+ .+ ..++...|.+|++|+.++++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEEEEEC
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCEEEeC
Confidence 88888888877555567788888888888887 5544455678888888 888887 55 45555588888888888888
Q ss_pred CCeeeEEcCCCCcCcccccEEec
Q 047285 514 GNSLILKFNPNWVPPFQLETLQL 536 (552)
Q Consensus 514 ~n~~~~~~~~~~~~~~~L~~L~l 536 (552)
+|.+...-+..|..+.+|+.++.
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 88888777778888888888764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=8e-16 Score=137.90 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=84.1
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
+|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 67777777777777777777777788888888888877667777778888888888888877777777778888888888
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 541 (552)
+|++.+..+...+... ++...+..+...+..|..+.. ....++..+.+
T Consensus 135 ~N~l~c~c~l~~~~~~--l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~~~~ 182 (192)
T 1w8a_A 135 SNPFNCNCHLAWFAEW--LRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182 (192)
T ss_dssp TCCBCCSGGGHHHHHH--HHHHCCSGGGCBBCSSTTTTT---SBGGGSCTTTC
T ss_pred CCCccCcCcchHHHHH--HHHcCCCCCCCCCCCChHHcC---CChhhCcHhhc
Confidence 8887766553222211 111233344445555554433 33344444444
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=8.6e-16 Score=131.75 Aligned_cols=128 Identities=24% Similarity=0.205 Sum_probs=109.5
Q ss_pred CCCCEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeee
Q 047285 408 YALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD 486 (552)
Q Consensus 408 ~~L~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 486 (552)
+++++|++++|.++ +.+|..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 47999999999998 77888889999999999999999865 7788999999999999999977888888899999999
Q ss_pred CCCccccee-cCHHhhhcCCCCCEEEccCCeeeEEcC---CCCcCcccccEEecCC
Q 047285 487 LSNNKLNAS-LSEIHFVNLTKLTWFSASGNSLILKFN---PNWVPPFQLETLQLRS 538 (552)
Q Consensus 487 L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~ 538 (552)
+++|++++. .+. .+..+++|++|++++|++.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999763 224 68899999999999999886544 3567788999998864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.8e-15 Score=128.54 Aligned_cols=104 Identities=28% Similarity=0.320 Sum_probs=75.2
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCcc-CcccccCCCCCCeeeC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGF-IPLSLGKLSHLEYLDL 487 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 487 (552)
+|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 677777777777654 5667777788888888887766777777777888888888887752 3366777888888888
Q ss_pred CCcccceecC--HHhhhcCCCCCEEEccC
Q 047285 488 SNNKLNASLS--EIHFVNLTKLTWFSASG 514 (552)
Q Consensus 488 ~~n~l~~~~~--~~~~~~l~~L~~L~L~~ 514 (552)
++|++++..+ ...+..+++|++|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888866554 12577788888887753
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.1e-15 Score=147.67 Aligned_cols=287 Identities=17% Similarity=0.115 Sum_probs=184.3
Q ss_pred CCCCCEEeccCCCCCCCccccCCccccCC-CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSG-LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252 (552)
Q Consensus 174 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 252 (552)
+.++++|.++++- . ...+..+.. +++|+.|||++|++...... ...++.++.+.+..+ ..++..|.+
T Consensus 24 ~~~l~~L~l~g~i-~-----~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~---~I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N-----AEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMAN---FVPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEE-C-----HHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTT---EECTTTTEE
T ss_pred hCceeEEEEeccc-c-----HHHHHHHHHhhccCeEEecCcceeEEecCc---ccccccccccccccc---ccCHHHhcc
Confidence 5567777776531 0 111222334 78899999999988732111 112233444554444 345566677
Q ss_pred --------CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC----CCCC
Q 047285 253 --------FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY----FNST 320 (552)
Q Consensus 253 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~ 320 (552)
+++|+.+++.. .++..... .|..+++|+.+++.+|.+....+..|..+.++..+....+. ....
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~---aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDA---AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTT---TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred cccccccccCCCcEEECCc-cccchhHH---HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence 89999999987 66655555 67788999999999988876666777777777777665532 2222
Q ss_pred CCccCCCCCCCC-EEEccCccceeecCccc---cCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCc
Q 047285 321 TPGWLSKFNDLE-FLSVAWNSLQGTISSVG---LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFS 396 (552)
Q Consensus 321 ~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~---l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 396 (552)
....|.++..|+ .+.+.... .++... .....+++.+.+.++- .......+..
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~------------------- 223 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRD------------------- 223 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHH-------------------
T ss_pred cccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee--cHHHHHHHHH-------------------
Confidence 334455566666 44443321 122111 1234556666665542 1111111111
Q ss_pred cccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCC-EEeCCCCcCCccCccc
Q 047285 397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLK-KLDLSNNMLNGFIPLS 475 (552)
Q Consensus 397 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~ 475 (552)
.+++|+.+++++|.++......|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++..-+..
T Consensus 224 ---------~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a 292 (329)
T 3sb4_A 224 ---------YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA 292 (329)
T ss_dssp ---------HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred ---------hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh
Confidence 1347899999998888777778888999999999887 6655567788999999 999988 666455677
Q ss_pred ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285 476 LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512 (552)
Q Consensus 476 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 512 (552)
|.+|++|+.++++.|+++ .++...|.++++|+.++.
T Consensus 293 F~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred hhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 888999999999888884 455558899999988763
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=9.7e-15 Score=127.90 Aligned_cols=132 Identities=25% Similarity=0.254 Sum_probs=77.8
Q ss_pred cCCcEEeccCCCCC-CCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCce
Q 047285 305 TSLRHLDLRFNYFN-STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS 383 (552)
Q Consensus 305 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 383 (552)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|+.|++++|. +++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~---- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENR-IFGGLDMLAEKLP---- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCC-CCSCCCHHHHHCT----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCc-CchHHHHHHhhCC----
Confidence 55666666666665 45555555566666666666665532 2 25666666666666666 5555555554444
Q ss_pred eecccccCCCCCccccccccccCCCCCCEEEccCCcCcccC-chhhcCCCCCcEEECCCCcccCCCc---ccccCCCCCC
Q 047285 384 VDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLP---PALGELSSLK 459 (552)
Q Consensus 384 l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~ 459 (552)
+|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 96 -------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 96 -------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp -------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred -------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 5666666666666532 2455666666666666666664333 2556666666
Q ss_pred EEeCCCCcCC
Q 047285 460 KLDLSNNMLN 469 (552)
Q Consensus 460 ~L~L~~n~l~ 469 (552)
+|++++|.+.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 6666666654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.7e-14 Score=127.49 Aligned_cols=133 Identities=23% Similarity=0.200 Sum_probs=74.2
Q ss_pred CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489 (552)
Q Consensus 410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 489 (552)
.+.++++++.++. +|..+ .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3455566655553 23222 24566666666666544444455666666666666666544444455666666666666
Q ss_pred cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
|++++..+. .+..+++|++|++++|++.+..+..+..+.+|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666543333 45556666666666666654333334555666666666666665544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=128.30 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=79.4
Q ss_pred CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487 (552)
Q Consensus 408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 487 (552)
+++++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 36777777777776 45567777777777777777777666666777777777777777777666666777777777777
Q ss_pred CCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521 (552)
Q Consensus 488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 521 (552)
++|++++ ++...+..+++|+.|++++|++.+..
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 110 HGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCCe-eChhhhhcCccccEEEeCCCCeecCC
Confidence 7777754 33335677777777777777776554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5e-14 Score=126.11 Aligned_cols=108 Identities=25% Similarity=0.303 Sum_probs=51.9
Q ss_pred CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS 511 (552)
Q Consensus 432 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 511 (552)
++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEE
Confidence 34555555555544 3444445555555555555555444444444555555555555555433333 444455555555
Q ss_pred ccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285 512 ASGNSLILKFNPNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 512 L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 541 (552)
|++|++....+..+..+.+|+.|++++|++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 555555433333344444555555555544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.6e-13 Score=121.20 Aligned_cols=87 Identities=26% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 34444444444443333334444444444444444443333334444444444444444443222233444444444444
Q ss_pred Cccccee
Q 047285 489 NNKLNAS 495 (552)
Q Consensus 489 ~n~l~~~ 495 (552)
+|++.+.
T Consensus 133 ~N~~~~~ 139 (177)
T 2o6r_A 133 TNPWDCS 139 (177)
T ss_dssp SSCBCCC
T ss_pred CCCeecc
Confidence 4444443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.2e-12 Score=130.93 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=119.1
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
+|+.+.+.+ .+...-...|..|++|+.+++.+|.++......|. +.+|+.+.+..+ +. .+...+|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence 455555554 33333344566666666666666666554444454 466666666543 33 555555666677777766
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
..+ ++......|.. . +|+.+.+. +.++......|.++++|+.+++.+
T Consensus 234 ~~~--l~~I~~~aF~~-~-----------------------------~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-S-----------------------------GITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CTT--CCEECTTTTTT-C-----------------------------CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred CCC--ccCcccccccc-C-----------------------------CccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 654 32222222322 2 45555552 334434445566666666666665
Q ss_pred Cccc-----CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCe
Q 047285 442 NSLF-----GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516 (552)
Q Consensus 442 n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 516 (552)
|.+. ...+..|.++++|+.+++.+ .++..-...|.+|++|+.+.|..+ + ..+....|.++ +|+.+++.+|.
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCC
Confidence 5443 12334566666777777663 344333445666677777777544 3 34444466666 77777777766
Q ss_pred eeEEcCCCCcCcc-cccEEecCCC
Q 047285 517 LILKFNPNWVPPF-QLETLQLRSC 539 (552)
Q Consensus 517 ~~~~~~~~~~~~~-~L~~L~l~~n 539 (552)
.....+..|..+. .++.|.+..+
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CcccccccccCCCCCccEEEeCHH
Confidence 5544444555542 5666666554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=8.3e-14 Score=122.90 Aligned_cols=131 Identities=22% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCCCCCEEEccCCcCcccCchhhcCC-CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285 406 GAYALESLDLSICQISGHLTNQLLQF-KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY 484 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 484 (552)
.+.+|++|++++|.++.. +. +..+ ++|+.|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 456889999999988853 44 4444 4899999999998854 56888899999999999988554455588899999
Q ss_pred eeCCCcccceecCH-HhhhcCCCCCEEEccCCeeeEEcCCC----CcCcccccEEecCCCCCC
Q 047285 485 LDLSNNKLNASLSE-IHFVNLTKLTWFSASGNSLILKFNPN----WVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 485 L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 542 (552)
|++++|++ +.+|. ..+..+++|++|++++|++. ..|.. +..+++|+.||+++|...
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 44553 25778899999999999987 44543 667888999999888754
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1e-13 Score=122.29 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=83.8
Q ss_pred cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL 200 (552)
Q Consensus 121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 200 (552)
.+.++.+|++|++++|.++. +|......++|++|++++|++++. ..++++++|++|++++|.++.++... +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----D 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----H
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----h
Confidence 46778899999999999984 565434345999999999999854 57888999999999999887655321 3
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC
Q 047285 201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245 (552)
Q Consensus 201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 245 (552)
..+++|++|++++|.+...+.+ ..+..+++|++|++++|.+...
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGS
T ss_pred hcCCCCCEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCc
Confidence 6677888888888877653321 2455667777777777766544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=5.9e-12 Score=125.80 Aligned_cols=249 Identities=8% Similarity=0.079 Sum_probs=120.9
Q ss_pred cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccC
Q 047285 200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG 279 (552)
Q Consensus 200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 279 (552)
|.++ +|+.+.+..+ +..+. ...+.+ .+|+.+.+.. .+..+....|.++++|+.+++..|.++..... .+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~--~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~---aF~- 201 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIG--DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS---TFV- 201 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEEC--TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT---TTT-
T ss_pred cccC-CccEEEeCCC-ccEEC--HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh---hEe-
Confidence 4443 5777776655 32211 112233 2566666664 45555556666666666666665555443332 222
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
+.+|+.+.+.++ +...-...|..+++|+.+++..+ ++......|.+ .+|+.+.+.. .++ .++..+|..+++|+.+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEV 276 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEE
Confidence 355666665533 33333345555555555555543 33333334444 4555555532 232 3444445555555555
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L 439 (552)
++.++. .. ......+....+.+|++|+.+.+.+ .++......|.++++|+.+.|
T Consensus 277 ~l~~~~-~~------------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 277 TTYGST-FN------------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEESSC-CC------------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EeCCcc-cc------------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 555443 11 0001112222334445566666653 344444455566666666666
Q ss_pred CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCC-CCCeeeCCCcc
Q 047285 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS-HLEYLDLSNNK 491 (552)
Q Consensus 440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 491 (552)
..+ ++..-..+|.++ +|+.+++.+|......+..|.+++ +++.|++..+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 443 333334455566 666666666655433334444443 45556555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.1e-11 Score=124.22 Aligned_cols=329 Identities=11% Similarity=0.075 Sum_probs=149.4
Q ss_pred ccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccc
Q 047285 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSW 199 (552)
Q Consensus 120 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 199 (552)
.+|.++++|+.+++..+ ++.+ -..+|.+|++|+.+++..+ ++..-...+.++++|+.+.+..+ +..++.. .
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~-----a 135 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE-----A 135 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT-----T
T ss_pred HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce-----e
Confidence 45777888888888643 5532 2456777888888888654 43233345667777776665433 1111111 1
Q ss_pred cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccC
Q 047285 200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG 279 (552)
Q Consensus 200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 279 (552)
+..+..++..........+ ...+..+++|+.+.+..+ +.......|. .
T Consensus 136 F~~~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~---------------------------~ 183 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFS---------------------------G 183 (394)
T ss_dssp TTTCCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTT---------------------------T
T ss_pred eecccccccccCccccccc----hhhhcccCCCcEEecCCc-cceecccccc---------------------------C
Confidence 2233222221111111100 122344455555554332 2223333344 4
Q ss_pred CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359 (552)
Q Consensus 280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 359 (552)
+.+|+.+.+..+ ++......+..+..|+.+.+..+... +........+|+.+.+... ++ .+....+..+..++.+
T Consensus 184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESI 258 (394)
T ss_dssp CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEE
T ss_pred CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ce-ecccccccccccceeE
Confidence 445555544443 22122334555555555555443221 1122233456666665433 22 3444446667777777
Q ss_pred eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439 (552)
Q Consensus 360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L 439 (552)
.+..+. .......|..+. .++.+......+ ....+..+.+|+.+.+
T Consensus 259 ~~~~~~--~~i~~~~F~~~~-----------------------------~l~~~~~~~~~i---~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 259 SIQNNK--LRIGGSLFYNCS-----------------------------GLKKVIYGSVIV---PEKTFYGCSSLTEVKL 304 (394)
T ss_dssp EECCTT--CEECSCTTTTCT-----------------------------TCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred EcCCCc--ceeecccccccc-----------------------------ccceeccCceee---cccccccccccccccc
Confidence 776553 212222333333 333333322211 1123344455555555
Q ss_pred CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL 519 (552)
Q Consensus 440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 519 (552)
.++ +...-..+|.++++|+.+++.++ ++..-...|.+|.+|+.+.+..+ + ..+....|.+|++|+.+++..+--
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~lp~~~~-- 378 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L-RKIGANAFQGCINLKKVELPKRLE-- 378 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTBTTCTTCCEEEEEGGGG--
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c-cEehHHHhhCCCCCCEEEECCCCE--
Confidence 433 22222334555555555555433 33222334555566666666544 3 334444566666666666644311
Q ss_pred EcCCCCcCcccccEE
Q 047285 520 KFNPNWVPPFQLETL 534 (552)
Q Consensus 520 ~~~~~~~~~~~L~~L 534 (552)
.+...+..|.+|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 112234455555443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=9e-16 Score=138.42 Aligned_cols=127 Identities=25% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
+|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 56666666666654 33 5555666666666666665 455555555666666666666653 33 35556666666666
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC----------CcCcccccEEecCCCCCC
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN----------WVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----------~~~~~~L~~L~l~~n~~~ 542 (552)
+|++++..+...+..+++|++|++++|++.+.+|.. +..+++|+.|| ++.++
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666643221124556666666666666666554432 44555666665 44444
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=3.7e-15 Score=134.35 Aligned_cols=62 Identities=27% Similarity=0.330 Sum_probs=29.5
Q ss_pred hhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365 (552)
Q Consensus 300 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 365 (552)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCCc
Confidence 55555555555555555554 23 4444455555555555444 33332 3333444444444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.1e-12 Score=114.77 Aligned_cols=109 Identities=25% Similarity=0.251 Sum_probs=81.6
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
..+++++++|.++. +|..+ .++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35678888888774 45444 3778888888888887777778888888888888888886555567778888888888
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 521 (552)
+|++++..+. .+..+++|++|+|++|++.+..
T Consensus 87 ~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRG-AFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTT-TTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHH-HhcCCCCCCEEEeCCCCCCCCc
Confidence 8888654443 6778888888888888877554
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=2.9e-11 Score=121.20 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=98.1
Q ss_pred ccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC
Q 047285 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483 (552)
Q Consensus 404 ~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 483 (552)
+.++..++.+.+..+.. ......+..+..++.+......+. ...+..+.+|+.+.+.++ ++..-...|.++.+|+
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCC
Confidence 34556788888876643 244567788899999988876543 246788999999999865 4433455688999999
Q ss_pred eeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285 484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC 539 (552)
Q Consensus 484 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 539 (552)
.++|..+ + ..+....|.+|.+|+.+++..+ +...-..+|..|.+|+.+++..+
T Consensus 324 ~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEEeCCc-c-cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9999755 4 5677668999999999999877 66566678999999999998654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3e-12 Score=111.96 Aligned_cols=109 Identities=24% Similarity=0.226 Sum_probs=96.1
Q ss_pred CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285 434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS 513 (552)
Q Consensus 434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 513 (552)
.+.+++++|+++ .+|..+ .++|++|++++|.+++..|..+.++++|++|+|++|++++..+. .+..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-hccCCCCCCEEECC
Confidence 578999999998 577665 37999999999999988888999999999999999999765544 78999999999999
Q ss_pred CCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285 514 GNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546 (552)
Q Consensus 514 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP 546 (552)
+|++.+..+..+..+.+|+.|++++|++...-+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999997777678899999999999999986544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=2.8e-12 Score=112.55 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=74.2
Q ss_pred CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489 (552)
Q Consensus 410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 489 (552)
-+.+++++|.++ .+|..+. ++|+.|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 356777777775 3454442 6777777777777766677777777777777777777754444566777777777777
Q ss_pred cccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285 490 NKLNASLSEIHFVNLTKLTWFSASGNSLILK 520 (552)
Q Consensus 490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 520 (552)
|++++ +|...+..+++|++|+|++|++.+.
T Consensus 91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred Cccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence 77754 3332577777777777777777644
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=6.2e-12 Score=110.31 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=94.0
Q ss_pred CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285 434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS 513 (552)
Q Consensus 434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 513 (552)
-+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+.++++|++|+|++|++++ +|...+..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence 378999999997 7777664 899999999999998889999999999999999999976 444368899999999999
Q ss_pred CCeeeEEcCCCCcCcccccEEecCCCCCCCC
Q 047285 514 GNSLILKFNPNWVPPFQLETLQLRSCHLGPH 544 (552)
Q Consensus 514 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 544 (552)
+|++.+..+..+..+.+|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999966655688899999999999999843
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=2.5e-13 Score=134.38 Aligned_cols=86 Identities=24% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Ccccc
Q 047285 409 ALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IPLSL 476 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~ 476 (552)
+|++|++++|.++.. ++..+...++|++|+|++|++++. ++..+...++|++|+|++|.+++. ++..+
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 566666666666532 223335556666666666666532 233445555666666666666532 22333
Q ss_pred cCCCCCCeeeCCCcccce
Q 047285 477 GKLSHLEYLDLSNNKLNA 494 (552)
Q Consensus 477 ~~l~~L~~L~L~~n~l~~ 494 (552)
...++|++|+|++|.+++
T Consensus 236 ~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 236 REHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHCSSCCEEECTTSSCCH
T ss_pred HhCCCCCEEeccCCCCCH
Confidence 345566666666666644
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=9.7e-13 Score=130.20 Aligned_cols=186 Identities=16% Similarity=0.113 Sum_probs=126.1
Q ss_pred CCCCCEEEccCccceeecCcc---ccC-CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcccccccc
Q 047285 328 FNDLEFLSVAWNSLQGTISSV---GLE-NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS 403 (552)
Q Consensus 328 l~~L~~L~l~~n~l~~~~~~~---~l~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 403 (552)
.++|+.|++++|.++...... .+. ..++|++|++++|. ++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~-------------------------- 123 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLP-------------------------- 123 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHH--------------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHH--------------------------
Confidence 367889999999887432211 122 33789999999997 65433322221
Q ss_pred ccCCCCCCEEEccCCcCcccCchhh-----cCCCCCcEEECCCCcccC----CCcccccCCCCCCEEeCCCCcCCcc---
Q 047285 404 SCGAYALESLDLSICQISGHLTNQL-----LQFKSLHTLELGHNSLFG----PLPPALGELSSLKKLDLSNNMLNGF--- 471 (552)
Q Consensus 404 ~~~~~~L~~L~ls~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~--- 471 (552)
.+.+|++|++++|.++......+ ...++|++|+|++|.+++ .++..+..+++|++|+|++|.+++.
T Consensus 124 --~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 124 --VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp --HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred --HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 11268999999999986554444 246889999999999874 2445567889999999999998753
Q ss_pred -CcccccCCCCCCeeeCCCccccee----cCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCc---c--cccEEe--cCCC
Q 047285 472 -IPLSLGKLSHLEYLDLSNNKLNAS----LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP---F--QLETLQ--LRSC 539 (552)
Q Consensus 472 -~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~---~--~L~~L~--l~~n 539 (552)
++..+...++|++|+|++|.+++. +.. .+...++|++|+|++|++.......+... . .|+.+. +.++
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~ 280 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT 280 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC---
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC
Confidence 355667788999999999999653 233 45678999999999999875533322221 1 266776 6666
Q ss_pred CCCC
Q 047285 540 HLGP 543 (552)
Q Consensus 540 ~~~~ 543 (552)
.++.
T Consensus 281 ~~~~ 284 (372)
T 3un9_A 281 AVSE 284 (372)
T ss_dssp -CHH
T ss_pred ccCH
Confidence 6653
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=3.1e-09 Score=106.35 Aligned_cols=320 Identities=11% Similarity=0.088 Sum_probs=194.8
Q ss_pred cCCCC-CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC---CCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285 200 LSGLY-MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ---LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS 275 (552)
Q Consensus 200 l~~l~-~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 275 (552)
|.+++ .|+.+.+..+ ++.+ -...+.+|++|+.+.+..+. ++......|..+.+|+.+.+..+ ++.....
T Consensus 59 F~~~~~~L~sI~iP~s-vt~I--g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~--- 131 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEI--GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE--- 131 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEE--CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT---
T ss_pred ccCCCCcCEEEEECCC-eeEE--hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh---
Confidence 56664 5888888754 3321 13456789999999987653 56666778888888888776543 2222222
Q ss_pred cccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285 276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355 (552)
Q Consensus 276 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 355 (552)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.. .+|+.+.+..+-. .+....+..+.+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTT
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccc
Confidence 5667888998888754 23233456778888888888664 33333344543 5788888765432 344445777888
Q ss_pred cCEEeCCCCCCCCCCCchhHhhcccC-ceeeccccc------CC-CCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285 356 IETLDLSGNSKLGGKIPTSFARLCKL-TSVDLSLID------LS-QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ 427 (552)
Q Consensus 356 L~~L~l~~n~~l~~~~~~~~~~l~~L-~~l~l~~~~------~~-~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 427 (552)
++........ .. .+...+...... ......... .. ......+....+.++..|+.+.+.++.. ......
T Consensus 207 l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~a 283 (394)
T 4gt6_A 207 LSTITSDSES-YP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGA 283 (394)
T ss_dssp CCEEEECCSS-SC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTT
T ss_pred cceecccccc-cc-cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcc
Confidence 8877765543 21 111111110000 000000000 00 0122223344566778899998876533 344567
Q ss_pred hcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCC
Q 047285 428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507 (552)
Q Consensus 428 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 507 (552)
|.++++|+.+.+.. .++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+.+.|..+ + ..+....|.+|++|
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCTTC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCCCC
Confidence 78899999999974 454344567889999999999865 44333556888999999999765 4 56777789999999
Q ss_pred CEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285 508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 541 (552)
+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999876542 3566777888888876654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.3e-10 Score=114.37 Aligned_cols=86 Identities=27% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCCCCEEEccC-CcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285 407 AYALESLDLSI-CQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 407 ~~~L~~L~ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (552)
+.+|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 33455555553 555544444455555555555555555544444455555555555555555432222333332 5555
Q ss_pred eCCCcccc
Q 047285 486 DLSNNKLN 493 (552)
Q Consensus 486 ~L~~n~l~ 493 (552)
+|.+|++.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 55555544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=1.1e-08 Score=102.24 Aligned_cols=105 Identities=12% Similarity=0.204 Sum_probs=60.5
Q ss_pred CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 485 (552)
++..|+.+.+. +.++......|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+|++|+.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 44566666664 3344444556777788888888654 44333456778888888888654 442334567788888888
Q ss_pred eCCCcccceecCHHhhhcCCCCCEEEccCCee
Q 047285 486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517 (552)
Q Consensus 486 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 517 (552)
++.++.... . .+..+..|+.+.+..+.+
T Consensus 363 ~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW---N-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH---H-TCBCCCCC----------
T ss_pred EECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence 888775421 2 466677788777765544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=3.3e-10 Score=111.47 Aligned_cols=108 Identities=22% Similarity=0.177 Sum_probs=92.5
Q ss_pred CEEEccCC-cCcccCchhhcCCCCCcEEECCC-CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285 411 ESLDLSIC-QISGHLTNQLLQFKSLHTLELGH-NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488 (552)
Q Consensus 411 ~~L~ls~n-~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 488 (552)
..++.+++ .+++ +|. +..+++|+.|+|++ |++.+..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 8875 677 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred CcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285 489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522 (552)
Q Consensus 489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 522 (552)
+|++++..+. .+..++ |++|+|.+|++.+.+.
T Consensus 89 ~N~l~~~~~~-~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWK-TVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCST-TTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHH-HcccCC-ceEEEeeCCCccCCCc
Confidence 9999764444 566665 9999999999987654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=4.9e-10 Score=109.81 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred CCCCcEEECCCCcccCCCcccc---cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCcccceecCHHhhhc
Q 047285 431 FKSLHTLELGHNSLFGPLPPAL---GELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN 503 (552)
Q Consensus 431 l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 503 (552)
+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++.... .+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHH
Confidence 4555555555555443222222 1355666666666666542 233334456777777777766544332 2332
Q ss_pred -CCCCCEEEccCCe
Q 047285 504 -LTKLTWFSASGNS 516 (552)
Q Consensus 504 -l~~L~~L~L~~n~ 516 (552)
+ ..+++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456776665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.6e-09 Score=106.14 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCCCCEEEccCCcCcccCchhhc---CCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCcccccC-
Q 047285 407 AYALESLDLSICQISGHLTNQLL---QFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLGK- 478 (552)
Q Consensus 407 ~~~L~~L~ls~n~~~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~- 478 (552)
+++|++|++++|.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45677777777766543332222 356777777777776642 2333345677777777777766443333322
Q ss_pred CCCCCeeeCCCcc
Q 047285 479 LSHLEYLDLSNNK 491 (552)
Q Consensus 479 l~~L~~L~L~~n~ 491 (552)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=9.1e-07 Score=87.87 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC
Q 047285 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483 (552)
Q Consensus 404 ~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 483 (552)
+.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334456666666543 44334445566666777666543 3323334566667777777766666533345566667777
Q ss_pred eeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285 484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515 (552)
Q Consensus 484 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 515 (552)
.+.|..+ + ..+....|.+|++|+.+.+..+
T Consensus 314 ~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPTA-L-KTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTT-C-CEECTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCcc-c-cEEHHHHhhCCCCCCEEEECCc
Confidence 7777543 3 3455556677777776666543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=3e-06 Score=84.07 Aligned_cols=315 Identities=10% Similarity=0.097 Sum_probs=140.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS 201 (552)
Q Consensus 122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 201 (552)
+....+|+.+.+... ++.+ -...|.+|.+|+.+++..+ ++..-...|.++ +|+.+.+..+ +..++.. .+.
T Consensus 42 ~~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~-----aF~ 111 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDY-----VFQ 111 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTT-----TTT
T ss_pred cccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccc-----eec
Confidence 344556777777543 4421 2345777788888887643 443333455555 5666665432 2222211 122
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285 202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR 281 (552)
Q Consensus 202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 281 (552)
. .+|+.+.+..+...- -...+.+ ..|+.+.+..+ +.......+..+..++...+........... ...
T Consensus 112 ~-~~L~~i~lp~~~~~i---~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~---~~~--- 179 (379)
T 4h09_A 112 G-TDLDDFEFPGATTEI---GNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN---YVL--- 179 (379)
T ss_dssp T-CCCSEEECCTTCCEE---CTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET---TEE---
T ss_pred c-CCcccccCCCccccc---ccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccc---cee---
Confidence 2 356676665442110 0111122 24555444332 3333344455555565555543322111000 000
Q ss_pred CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361 (552)
Q Consensus 282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 361 (552)
.+ ........+.....+..+.+.... .......+..+.+|+.+.+..+ +. .+....+..+..|+.+.+
T Consensus 180 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~l 247 (379)
T 4h09_A 180 --------YN-KNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAI 247 (379)
T ss_dssp --------EE-TTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEE
T ss_pred --------cc-cccceeccccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEc
Confidence 00 000111122223334444433221 1122334455566666666543 22 344444666777777776
Q ss_pred CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441 (552)
Q Consensus 362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~ 441 (552)
..+ ++......|..+. +|+.+.+..+ +.......|.++++|+.+.+.+
T Consensus 248 p~~--v~~I~~~aF~~~~-----------------------------~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 248 PKN--VTSIGSFLLQNCT-----------------------------ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CTT--CCEECTTTTTTCT-----------------------------TCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred CCC--ccEeCccccceee-----------------------------hhcccccccc-ceeccccccccccccccccccc
Confidence 554 3322233333333 3444444322 2222233445555555555555
Q ss_pred CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCC
Q 047285 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLT 505 (552)
Q Consensus 442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 505 (552)
+.++..-..+|.++.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ + ..+....|.++.
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v-~~I~~~aF~~c~ 356 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I-TLIESGAFEGSS 356 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C-CEECTTTTTTSS
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c-CEEchhHhhCCC
Confidence 5554333345555666666666443 32222334556666666666543 3 334443555553
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=3.4e-08 Score=87.22 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCCCCEEEccCC-cCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----C
Q 047285 406 GAYALESLDLSIC-QISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----I 472 (552)
Q Consensus 406 ~~~~L~~L~ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 472 (552)
..+.|++|++++| .+... +...+...++|++|+|++|++.+. +...+...++|++|+|++|.+.+. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3457888888888 77643 334455667788888888887642 334445557788888888877643 3
Q ss_pred cccccCCCCCCeeeC--CCccccee----cCHHhhhcCCCCCEEEccCCeee
Q 047285 473 PLSLGKLSHLEYLDL--SNNKLNAS----LSEIHFVNLTKLTWFSASGNSLI 518 (552)
Q Consensus 473 ~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~ 518 (552)
...+...++|++|+| ++|.+... +.+ .+...+.|++|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 455566677888888 77777543 222 4555677777777777664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=1.9e-08 Score=88.90 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=92.2
Q ss_pred CchhhcCCCCCcEEECCCC-cccCC----CcccccCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCcccce
Q 047285 424 LTNQLLQFKSLHTLELGHN-SLFGP----LPPALGELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNA 494 (552)
Q Consensus 424 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 494 (552)
+...+...++|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456677899999999999 88742 445567789999999999999753 34455667899999999999965
Q ss_pred e----cCHHhhhcCCCCCEEEc--cCCeeeEEc----CCCCcCcccccEEecCCCCCC
Q 047285 495 S----LSEIHFVNLTKLTWFSA--SGNSLILKF----NPNWVPPFQLETLQLRSCHLG 542 (552)
Q Consensus 495 ~----~~~~~~~~l~~L~~L~L--~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~ 542 (552)
. +.. .+...+.|++|+| ++|.+.... ...+....+|+.|++++|.+.
T Consensus 108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 333 5777899999999 889988553 233445578999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.1e-07 Score=86.35 Aligned_cols=81 Identities=27% Similarity=0.330 Sum_probs=56.3
Q ss_pred cCCCCCcEEECCCCcccC--CCcccccCCCCCCEEeCCCCcCCccCcccccCCC--CCCeeeCCCcccceecCH------
Q 047285 429 LQFKSLHTLELGHNSLFG--PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS--HLEYLDLSNNKLNASLSE------ 498 (552)
Q Consensus 429 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------ 498 (552)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457788888888888875 4455666788888888888887753 2233333 788888888888776552
Q ss_pred HhhhcCCCCCEEE
Q 047285 499 IHFVNLTKLTWFS 511 (552)
Q Consensus 499 ~~~~~l~~L~~L~ 511 (552)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466778888776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=2.4e-07 Score=85.90 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCCCCEEEccCCcCcc--cCchhhcCCCCCcEEECCCCcccCCCcccccCCC--CCCEEeCCCCcCCccCcc-------
Q 047285 406 GAYALESLDLSICQISG--HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELS--SLKKLDLSNNMLNGFIPL------- 474 (552)
Q Consensus 406 ~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~------- 474 (552)
.+++|+.|+|++|.+++ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|++.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45689999999999998 4557778899999999999999854 3344444 999999999999877763
Q ss_pred cccCCCCCCeee
Q 047285 475 SLGKLSHLEYLD 486 (552)
Q Consensus 475 ~~~~l~~L~~L~ 486 (552)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366789999886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=3.8e-07 Score=78.35 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc-ccCCCcccccCC----CCCCEEeCCCCc-CCccCcccccCCCCC
Q 047285 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS-LFGPLPPALGEL----SSLKKLDLSNNM-LNGFIPLSLGKLSHL 482 (552)
Q Consensus 409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 482 (552)
.|+.||+++|.++..-...+..+++|+.|+|++|. +++.--..+..+ ++|++|++++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 68888888888877666677788888888888885 665444445553 368888888875 665444455667888
Q ss_pred CeeeCCCcc
Q 047285 483 EYLDLSNNK 491 (552)
Q Consensus 483 ~~L~L~~n~ 491 (552)
++|+|++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=4.1e-07 Score=78.15 Aligned_cols=85 Identities=8% Similarity=0.066 Sum_probs=64.6
Q ss_pred CCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc-CCccCcccccCC----CCCCeeeCCCcc-cceecCHHhhhcC
Q 047285 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM-LNGFIPLSLGKL----SHLEYLDLSNNK-LNASLSEIHFVNL 504 (552)
Q Consensus 431 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~l 504 (552)
-.+|+.||+++|.+++.-...+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--. .+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcC
Confidence 3479999999999887666677889999999999985 665444445543 479999999985 6655444 56788
Q ss_pred CCCCEEEccCCe
Q 047285 505 TKLTWFSASGNS 516 (552)
Q Consensus 505 ~~L~~L~L~~n~ 516 (552)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 889999998886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00012 Score=64.05 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=75.4
Q ss_pred CCCCCEEEccCC-cCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Cc
Q 047285 407 AYALESLDLSIC-QISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IP 473 (552)
Q Consensus 407 ~~~L~~L~ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~ 473 (552)
-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.+.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 347889999885 77542 345566678899999999988743 344455567899999999988643 33
Q ss_pred ccccCCCCCCeeeCCCc---cccee----cCHHhhhcCCCCCEEEccCCee
Q 047285 474 LSLGKLSHLEYLDLSNN---KLNAS----LSEIHFVNLTKLTWFSASGNSL 517 (552)
Q Consensus 474 ~~~~~l~~L~~L~L~~n---~l~~~----~~~~~~~~l~~L~~L~L~~n~~ 517 (552)
+.+..-+.|++|+|++| .+... +.+ .+..-+.|++|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 45556677889998765 33321 333 566778888888877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.87 E-value=0.00014 Score=63.62 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred hhhcCCCCCcEEECCCC-cccC----CCcccccCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCccccee-
Q 047285 426 NQLLQFKSLHTLELGHN-SLFG----PLPPALGELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNAS- 495 (552)
Q Consensus 426 ~~l~~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~- 495 (552)
..+.+-+.|+.|+|++| ++.+ .+-+.+..-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|+.|.+.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456788999999986 7753 2445667778999999999999754 344455668999999999999654
Q ss_pred ---cCHHhhhcCCCCCEEEccCC---eeeEE----cCCCCcCcccccEEecCCCCC
Q 047285 496 ---LSEIHFVNLTKLTWFSASGN---SLILK----FNPNWVPPFQLETLQLRSCHL 541 (552)
Q Consensus 496 ---~~~~~~~~l~~L~~L~L~~n---~~~~~----~~~~~~~~~~L~~L~l~~n~~ 541 (552)
+.+ .+..-+.|++|+|++| .+... +...+..-..|+.|+++.|.+
T Consensus 115 a~ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223 5666788999999865 33322 223334446899999987754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.33 E-value=0.005 Score=50.09 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=42.2
Q ss_pred cEEECCCCccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccce
Q 047285 435 HTLELGHNSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494 (552)
Q Consensus 435 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 494 (552)
..++.++++++ ..+|..+ .++|++|+|++|.++..-+..|..+++|++|+|++|++.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36788888776 3555443 2368888998888885555567788888888888887754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.93 E-value=0.015 Score=47.28 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=42.5
Q ss_pred CEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285 411 ESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469 (552)
Q Consensus 411 ~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 469 (552)
..++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888776 3455433 346889999999988655666788888999999988874
No 165
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=40.81 E-value=20 Score=19.61 Aligned_cols=21 Identities=33% Similarity=0.217 Sum_probs=15.2
Q ss_pred CcccchhhHHHHHHHHHHHHH
Q 047285 1 MKSTIMSVSVAILFLELFVVA 21 (552)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (552)
|++|+-..-.|+.+++++--+
T Consensus 1 MrkhLG~~wlai~c~LLfs~L 21 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHL 21 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHT
T ss_pred CcchhhhhHHHHHHHHHHhhH
Confidence 788888887777777765443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.50 E-value=92 Score=23.12 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=23.0
Q ss_pred cCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCC
Q 047285 423 HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465 (552)
Q Consensus 423 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 465 (552)
.-...|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445566666666666553 2223334566666666666654
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.35 E-value=91 Score=23.15 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=25.2
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285 444 LFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489 (552)
Q Consensus 444 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 489 (552)
++..-..+|.++++|+.+.+-.+- +..-...|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333334556667777777766542 212234566667777766654
Done!