BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047286
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 56/238 (23%)
Query: 81 PYDNRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE---------------- 124
P F +PSG+ ALVG SGSGKSTV++L+ R Y P +
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRLYDPASGTISLDGHDIRQLNPVW 415
Query: 125 -QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASD---EHIRPAVQLANAEKSIDKLPLGL 180
+ KIG VS+EPI C E I YG + S E I+ ++ANA I P G
Sbjct: 416 LRSKIGTVSQEPILFSCSIAEN--IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGF 473
Query: 181 DTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQ 208
+TVV AT+A+DA++E +VQ A+ +L+ +
Sbjct: 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR 533
Query: 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
TV+++A+ L TI+NA+ + ++ +GKI E G H+EL+ P G Y +L+ Q A++
Sbjct: 534 TVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 110/319 (34%), Gaps = 120/319 (37%)
Query: 425 CFFIGSKLVEHGDATFGEVFKFLSEFGCFWCLES----TAVAPNADKAKGSAASIFEILE 480
+ G L+ T GE+ FL FW S ++ K G+ ++E+LE
Sbjct: 263 VLYKGGLLMGSAHMTVGELSSFL--MYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFEHT-------------------------VALVGENG 515
+PK+ ++ + + +G + F++ ALVG +G
Sbjct: 321 REPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSG 380
Query: 516 NGKSTVISLAERFHNP------------EQVIYSW------------IIIKCT------- 544
+GKSTV+SL R ++P Q+ W I+ C+
Sbjct: 381 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 440
Query: 545 -----------------------NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
FI + PQG + VGE+G+ LSGG KQRIA RA
Sbjct: 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNA++ +V+ G I
Sbjct: 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560
Query: 607 EKGRHDALMKITDGTYASL 625
E G+H+ L+ +G Y L
Sbjct: 561 EYGKHEELLSKPNGIYRKL 579
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 56/230 (24%)
Query: 81 PYDNRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE---------------- 124
P F +PSG+ ALVG SGSGKSTV++L+ R Y P +
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRLYDPASGTISLDGHDIRQLNPVW 446
Query: 125 -QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASD---EHIRPAVQLANAEKSIDKLPLGL 180
+ KIG VS+EPI C E I YG + S E I+ ++ANA I P G
Sbjct: 447 LRSKIGTVSQEPILFSCSIAEN--IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGF 504
Query: 181 DTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQ 208
+TVV AT+A+DA++E +VQ A+ +L+ +
Sbjct: 505 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR 564
Query: 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
TV+++A+ L TI+NA+ + ++ +GKI E G H+EL+ P G Y +L+ Q
Sbjct: 565 TVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 110/319 (34%), Gaps = 120/319 (37%)
Query: 425 CFFIGSKLVEHGDATFGEVFKFLSEFGCFWCLES----TAVAPNADKAKGSAASIFEILE 480
+ G L+ T GE+ FL FW S ++ K G+ ++E+LE
Sbjct: 294 VLYKGGLLMGSAHMTVGELSSFL--MYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 351
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFEHT-------------------------VALVGENG 515
+PK+ ++ + + +G + F++ ALVG +G
Sbjct: 352 REPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSG 411
Query: 516 NGKSTVISLAERFHNP------------EQVIYSW------------IIIKCT------- 544
+GKSTV+SL R ++P Q+ W I+ C+
Sbjct: 412 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 471
Query: 545 -----------------------NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
FI + PQG + VGE+G+ LSGG KQRIA RA
Sbjct: 472 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 531
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNA++ +V+ G I
Sbjct: 532 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKIT 591
Query: 607 EKGRHDALMKITDGTYASL 625
E G+H+ L+ +G Y L
Sbjct: 592 EYGKHEELLSKPNGIYRKL 610
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 51/219 (23%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSKE 134
+P+G TVALVG+SGSGKST+ +L+ F R Y + + ++ LVS+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 135 PIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------- 184
+ LF D I Y + + S E I A ++A A I+K+ GLDTV+
Sbjct: 426 -VHLFND-TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483
Query: 185 -----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIR 221
AT+A+D +SER +QAA+ +L N+T +++A+ L TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 222 NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
AD I++V G IVE+GTH++L+E G Y+QL ++Q G
Sbjct: 544 KADEIVVVEDGVIVERGTHNDLLEH-RGVYAQLHKMQFG 581
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 71/210 (33%), Gaps = 88/210 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFH------------------------------------- 529
TVALVG +G+GKST+ SL RF+
Sbjct: 371 TVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 530 ---------------NPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIA 574
+ EQ+ + + +FI + G D +GE G+ LSGG +QRIA
Sbjct: 431 DTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 575 RTRA-----------------------------------RNYCGCGSPPYHYKNADITSV 599
RA R + AD V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVV 550
Query: 600 VKNGVIAEKGRHDALMKITDGTYASLTALH 629
V++GVI E+G H+ L++ G YA L +
Sbjct: 551 VEDGVIVERGTHNDLLE-HRGVYAQLHKMQ 579
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 54/223 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLVS 132
V SG TVALVG SG GKST + L++ R Y P +E IG+VS
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQ--RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS 470
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+EP+ E I YG+++ + + I AV+ ANA I KLP DT+V
Sbjct: 471 QEPVLFATTIAEN--IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE +VQAA+ K +T +++A+ L T+
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
RNAD I G IVE+G HDEL+ + +G Y +LV Q E
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNE 630
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 56/227 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE-----------------QEKIGLV 131
V G T+ALVG SG GKSTV+ L+E RFY P A + ++G+V
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLLE--RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 132 SKEPIFLFCDFNEGQYIPYGKQN--ASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
S+EPI C E I YG + S E I A + AN + ID LP +T V
Sbjct: 1113 SQEPILFDCSIAEN--IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+A+D +SE++VQ A+ K +T +++A+ L
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEA 264
TI+NAD I+++ GK+ E GTH +L+ +G Y +V +Q GAK +
Sbjct: 1231 STIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAKRS 1276
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 162/460 (35%), Gaps = 182/460 (39%)
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLAV-PSLT 404
++G + RL+ D S + +GD +G+ Q +AT G +I FT WKL + LA+ P L
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 405 IAEG----------------YLK--------------------KKKNYERLHIN------ 422
++ G Y K +KK ER + N
Sbjct: 223 LSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKR 282
Query: 423 ------------------------AFCFFIGSKLVEHGDATFGEVFK--FLSEFGCFWCL 456
A F+ G+ LV + + G+V F G F
Sbjct: 283 LGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVG 342
Query: 457 ESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH---------- 506
+++ A+G+A +F+I+++KP ID SK G P ++G++ F++
Sbjct: 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKE 402
Query: 507 ---------------TVALVGENGNGKSTVISLAERFHNP-------------------- 531
TVALVG +G GKST + L +R ++P
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 532 ---------EQVIYSWIIIK----------------------CTNFIASLPQGSDLNVGE 560
E V+++ I + +FI LP D VGE
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 561 RGLQLSGGLKQRIARTRA-----------------------------------RNYCGCG 585
RG QLSGG KQRIA RA R
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIA 582
Query: 586 SPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
+NAD+ + GVI E+G HD LM+ G Y L
Sbjct: 583 HRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKL 621
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 118/322 (36%), Gaps = 116/322 (36%)
Query: 423 AFCFFIGSKLVEHGDATFGEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILE 480
A F G+ LV TF V S FG + ++ AP+ KA SA+ I I+E
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFE-------------------------HTVALVGENG 515
P+ID S G+ P+ + G++ F T+ALVG +G
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 516 NGKSTVISLAERFHNP------------EQVIYSW------------IIIKCT------- 544
GKSTV+ L ERF++P +Q+ W I+ C+
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 545 ----------------------NFIASLPQGSDLNVGERGLQLSGGLKQRIARTR----- 577
FI SLP + VG++G QLSGG KQRIA R
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 578 ---------------------------ARNYCGCGSPPYHY---KNADITSVVKNGVIAE 607
AR C + +NAD+ V++NG + E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 608 KGRHDALMKITDGTYASLTALH 629
G H L+ G Y S+ ++
Sbjct: 1250 HGTHQQLLA-QKGIYFSMVSVQ 1270
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLA-VPSLTIA 406
GA+ RL+ DA+ V+ G L +I QNIA + G++I+ W+L + LA VP + IA
Sbjct: 808 GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIA 867
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 54/223 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLVS 132
V SG TVALVG SG GKST + L++ R Y P +E IG+VS
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQ--RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS 470
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+EP+ E I YG+++ + + I AV+ ANA I KLP DT+V
Sbjct: 471 QEPVLFATTIAEN--IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE +VQAA+ K +T +++A+ L T+
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
RNAD I G IVE+G HDEL+ + +G Y +LV Q E
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNE 630
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 56/227 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE-----------------QEKIGLV 131
V G T+ALVG SG GKSTV+ L+E RFY P A + ++G+V
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLLE--RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 132 SKEPIFLFCDFNEGQYIPYGKQN--ASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
S+EPI C E I YG + S E I A + AN + ID LP +T V
Sbjct: 1113 SQEPILFDCSIAEN--IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+A+D +SE++VQ A+ K +T +++A+ L
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEA 264
TI+NAD I+++ GK+ E GTH +L+ +G Y +V +Q GAK +
Sbjct: 1231 STIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAKRS 1276
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 162/460 (35%), Gaps = 182/460 (39%)
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLAV-PSLT 404
++G + RL+ D S + +GD +G+ Q +AT G +I FT WKL + LA+ P L
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLG 222
Query: 405 IAEG----------------YLK--------------------KKKNYERLHIN------ 422
++ G Y K +KK ER + N
Sbjct: 223 LSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKR 282
Query: 423 ------------------------AFCFFIGSKLVEHGDATFGEVFK--FLSEFGCFWCL 456
A F+ G+ LV + + G+V F G F
Sbjct: 283 LGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVG 342
Query: 457 ESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH---------- 506
+++ A+G+A +F+I+++KP ID SK G P ++G++ F++
Sbjct: 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKE 402
Query: 507 ---------------TVALVGENGNGKSTVISLAERFHNP-------------------- 531
TVALVG +G GKST + L +R ++P
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 532 ---------EQVIYSWIIIK----------------------CTNFIASLPQGSDLNVGE 560
E V+++ I + +FI LP D VGE
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 561 RGLQLSGGLKQRIARTRA-----------------------------------RNYCGCG 585
RG QLSGG KQRIA RA R
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIA 582
Query: 586 SPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
+NAD+ + GVI E+G HD LM+ G Y L
Sbjct: 583 HRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKL 621
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 119/322 (36%), Gaps = 116/322 (36%)
Query: 423 AFCFFIGSKLVEHGDATFGEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILE 480
A CF G+ LV TF V S FG + ++ AP+ KA SA+ I I+E
Sbjct: 950 AACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFE-------------------------HTVALVGENG 515
P+ID S G+ P+ + G++ F T+ALVG +G
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 516 NGKSTVISLAERFHNP------------EQVIYSW------------IIIKCT------- 544
GKSTV+ L ERF++P +Q+ W I+ C+
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 545 ----------------------NFIASLPQGSDLNVGERGLQLSGGLKQRIARTR----- 577
FI SLP + VG++G QLSGG KQRIA R
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 578 ---------------------------ARNYCGCGSPPYHY---KNADITSVVKNGVIAE 607
AR C + +NAD+ V++NG + E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 608 KGRHDALMKITDGTYASLTALH 629
G H L+ G Y S+ ++
Sbjct: 1250 HGTHQQLLA-QKGIYFSMVSVQ 1270
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLA-VPSLTIA 406
GA+ RL+ DA+ V+ G L +I QNIA + G++I+ W+L + LA VP + IA
Sbjct: 808 GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIA 867
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 57/224 (25%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------------QEKIGLVSK 133
+PSGTT ALVG +GSGKST+ L+ +RFY E + + IG+V +
Sbjct: 43 IPSGTTCALVGHTGSGKSTIAKLL--YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 134 EPIFLFCDFNEG-QY-IPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
+ I FNE +Y I YGK +A+DE + A + A I+ LP DT+V
Sbjct: 101 DTIL----FNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+++D+++E + Q A+ L N+T++I+A+ L T
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
I +A+ II+++KGKIVEKGTH +L++ G Y+++ +Q G +
Sbjct: 217 ISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNMQSGGND 259
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 50/121 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPE---------------------------------- 532
T ALVG G+GKST+ L RF++ E
Sbjct: 48 TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
Query: 533 ----QVIYSWI------IIKCT------NFIASLPQGSDLNVGERGLQLSGGLKQRIART 576
++Y + +IK T +FI +LP+ D VG +G++LSGG +QRIA
Sbjct: 108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167
Query: 577 R 577
R
Sbjct: 168 R 168
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 53/220 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSKE 134
+P G TVALVG+SGSGKST+ NL F R Y + LVS+
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 135 PIFLFCDF--NEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+ LF D N Y G+ + E I A + A+A + I+ +P GLDTV+
Sbjct: 426 -VHLFNDTIANNIAYAAEGEY--TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SER +QAA+ +L N+TV+++A+ L TI
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
AD I++V +G+I+E+G H +L+ +GAY+QL R+Q G
Sbjct: 543 EQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQFG 581
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 66/206 (32%), Gaps = 88/206 (42%)
Query: 507 TVALVGENGNGKSTVISLAERF-------------------------------------- 528
TVALVG +G+GKST+ +L RF
Sbjct: 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 529 --------------HNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIA 574
+ EQ+ + FI ++PQG D +GE G LSGG +QR+A
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
Query: 575 RTRA-----------------------------------RNYCGCGSPPYHYKNADITSV 599
RA + + AD V
Sbjct: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
Query: 600 VKNGVIAEKGRHDALMKITDGTYASL 625
V G I E+GRH L+ DG YA L
Sbjct: 551 VDEGEIIERGRHADLLA-QDGAYAQL 575
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 54/221 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
H+ G VALVG +GSGK+T++NL+ RFY + Q IG+V
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLL--MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++ I E + YG A+DE I+ A +L +++ I LP G +TV+
Sbjct: 435 LQDTILFSTTVKEN--LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+ VD ++E+ +QAAM KL+ +T +I+A+ L T
Sbjct: 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
I+NAD II++ G+IVE G HDELI+ G Y +L Q G
Sbjct: 553 IKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 90/269 (33%), Gaps = 111/269 (41%)
Query: 468 AKGSAASIFEILESKPKID-------------------WSSKDGMTPSTVRGDIVFE--- 505
A SA IFEIL+ + + D W S D P V DI F
Sbjct: 323 ALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIKP 380
Query: 506 -HTVALVGENGNGKSTVISLAERFHNPEQ------------------------VIYSWII 540
VALVG G+GK+T+++L RF++ ++ V+ I+
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 541 IKCT---------------------------NFIASLPQGSDLNVGERGLQLSGGLKQRI 573
T +FI LP+G + + + G LS G +Q +
Sbjct: 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 574 ARTRA-----------------------------------RNYCGCGSPPYHYKNADITS 598
A TRA + KNAD+
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII 560
Query: 599 VVKNGVIAEKGRHDALMKITDGTYASLTA 627
V+++G I E G+HD L++ Y T+
Sbjct: 561 VLRDGEIVEMGKHDELIQKRGFYYELFTS 589
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 51/219 (23%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSKE 134
+P+G TVALVG+SGSGKST+ +L+ F R Y + + ++ LVS+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 135 PIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------- 184
+ LF D I Y + + S E I A ++A A I+K+ GLDT++
Sbjct: 426 -VHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483
Query: 185 -----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIR 221
AT+A+D +SER +QAA+ +L N+T +++A+ L TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 222 NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
AD I++V G IVE+GTH EL+ G Y+QL ++Q G
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQFG 581
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 69/210 (32%), Gaps = 88/210 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFH------------------------------------- 529
TVALVG +G+GKST+ SL RF+
Sbjct: 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 530 ---------------NPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIA 574
+ EQ+ + + +FI + G D +GE G+ LSGG +QRIA
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490
Query: 575 RTRA-----------------------------------RNYCGCGSPPYHYKNADITSV 599
RA R + AD V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV 550
Query: 600 VKNGVIAEKGRHDALMKITDGTYASLTALH 629
V++G+I E+G H L+ G YA L +
Sbjct: 551 VEDGIIVERGTHSELLA-QHGVYAQLHKMQ 579
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 150/349 (42%), Gaps = 92/349 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLV 131
V +G TVALVG SG GKST+I+L+ R+Y E ++ + +V
Sbjct: 440 RVNAGQTVALVGSSGCGKSTIISLL--LRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
S+EP C E I GK+ + E + A ++ANAEK I LP G +T+V
Sbjct: 498 SQEPALFNCTIEEN--ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+DA+SE IVQ A+ K +T +I+A+ L T
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ----------EG--------- 260
IRNAD II G++VE G H L+ +G Y LV Q EG
Sbjct: 616 IRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVA 674
Query: 261 ---------AKEAQDKSLGVKHILRGFPGPIGVYETAERSEDRIEKD-----PTEIEKR- 305
+++A + + + G I + E+RI KD E+E+
Sbjct: 675 RQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENN 734
Query: 306 -KKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINIGA 350
+K ++ + Y R L IG A I ++P + + ++ +N+ A
Sbjct: 735 AQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFA 783
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 52/223 (23%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLVS 132
V G T+ALVG SG GKSTV+ L+E RFY PE + +I +VS
Sbjct: 1102 VEPGQTLALVGPSGCGKSTVVALLE--RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVS 1159
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+EP C E + + + A +LAN I +LP G +T V
Sbjct: 1160 QEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE++VQ A+ + +T +++A+ L T+
Sbjct: 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV 1279
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
NADCI +VS G I+EKGTH +L+ + +GAY +L + Q K+
Sbjct: 1280 MNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEKK 1321
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 113/320 (35%), Gaps = 122/320 (38%)
Query: 423 AFCFFIGSKLVEHGDATFGEVFKFLSEFGCFWCLESTAVAPNADK------AKGSAASIF 476
A F+IG V G FG++ S + S A+ + A+G+A+ I+
Sbjct: 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSV----MMGSMALGLAGPQLAVLGTAQGAASGIY 390
Query: 477 EILESKPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALV 511
E+L+ KP ID SSK G ++GDI E+ TVALV
Sbjct: 391 EVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALV 450
Query: 512 GENGNGKSTVISLAERFHN----------------------------------------- 530
G +G GKST+ISL R+++
Sbjct: 451 GSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE 510
Query: 531 ----------PEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA-- 578
E+++ + + FI +LP G + VG+RG QLSGG KQRIA RA
Sbjct: 511 NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570
Query: 579 ---------------------------------RNYCGCGSPPYHYKNADITSVVKNGVI 605
R +NAD+ KNG +
Sbjct: 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQV 630
Query: 606 AEKGRHDALMKITDGTYASL 625
E G H ALM G Y L
Sbjct: 631 VEVGDHRALMA-QQGLYYDL 649
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 100/287 (34%), Gaps = 115/287 (40%)
Query: 458 STAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506
+T+ P KA + IF +L KID S G + G ++F++
Sbjct: 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEI 1092
Query: 507 --------------TVALVGENGNGKSTVISLAERFH-----------------NPEQVI 535
T+ALVG +G GKSTV++L ERF+ NPE
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152
Query: 536 YSWIIIK-------CT-----------------------------NFIASLPQGSDLNVG 559
I+ C+ NFIA LP+G + VG
Sbjct: 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 560 ERGLQLSGGLKQRI--------------------------------ARTRARNYCGCGSP 587
+RG QLSGG KQRI A RAR C
Sbjct: 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272
Query: 588 PYHYK---NADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631
+ NAD +VV NG I EKG H LM G Y LT M+
Sbjct: 1273 AHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS-EKGAYYKLTQKQMT 1318
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLAVPSLTIAE 407
G + +L + V+ GD +G+ Q ++ G ++AFT +W+L + LAV +
Sbjct: 193 GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALC 252
Query: 408 GY 409
G+
Sbjct: 253 GF 254
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA-FTAWKLAFITLAVPSLTIAE 407
G + RL+TD +R+ + +I + ++ AG+ +A F W++A + +A+ +
Sbjct: 853 GKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFG 912
Query: 408 GYLKKKK 414
YL+ ++
Sbjct: 913 QYLRGRR 919
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 106/218 (48%), Gaps = 54/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G TVA VG SG GKST+INL+ RFY + Q +IGLV
Sbjct: 364 IEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ I LF D + I G+ A+DE + A ++ANA I LP G DT V
Sbjct: 422 QDNI-LFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE I+Q A+ L ++T +IVA+ L TI
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+AD I+++ G IVE GTH ELI +GAY L +Q
Sbjct: 540 THADKIVVIENGHIVETGTHRELIA-KQGAYEHLYSIQ 576
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 71/184 (38%), Gaps = 60/184 (32%)
Query: 461 VAPNADKAKGSAASIFEILESKPKID---WSSKDGMTPSTVRGDIVFE--HTVALVGENG 515
+ + D G A EI + + ID + D P ++ E TVA VG +G
Sbjct: 318 IDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 516 NGKSTVISLAERFHN--------------------------------------------- 530
GKST+I+L RF++
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 531 ------PEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGC 584
E+V+ + + +FI +LPQG D VGERG++LSGG KQR++ R
Sbjct: 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR----IFL 493
Query: 585 GSPP 588
+PP
Sbjct: 494 NNPP 497
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 28 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 85
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 86 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 143
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A+ L T+
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 203
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 204 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 99 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNAD V++ G I
Sbjct: 159 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 218
Query: 607 EKGRHDALMKITDGTYASLTAL 628
E+G+H L+ + Y+ L L
Sbjct: 219 EQGKHKELLSEPESLYSYLYQL 240
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 32 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 89
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 90 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A+ L T+
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 207
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 208 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNAD V++ G I
Sbjct: 163 NPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 223 EQGKHKELLSEPESLYSYLYQLQ 245
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 26 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 83
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 84 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 141
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A+ L T+
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 201
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNAD V++ G I
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 216
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 217 EQGKHKELLSEPESLYSYLYQLQ 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 32 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 89
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 90 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A+ L T+
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 207
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 208 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNAD V++ G I
Sbjct: 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 223 EQGKHKELLSEPESLYSYLYQLQ 245
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG++GSGKST+ L++ RFY PE Q ++G+V
Sbjct: 28 IKQGEVIGIVGRAGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 85
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 86 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 143
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A+ L T+
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 203
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 204 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 99 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R KNAD V++ G I
Sbjct: 159 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 218
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 219 EQGKHKELLSEPESLYSYLYQLQ 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 26 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 83
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 84 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 141
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A L T+
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTV 201
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R + KNAD V++ G I
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIV 216
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 217 EQGKHKELLSEPESLYSYLYQLQ 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 53/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 32 IKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVVL 89
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 90 QDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M K+ +TV+I+A L T+
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTV 207
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 208 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 35/143 (24%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--- 578
ISLA + E+VIY+ + +FI+ L +G + VGE+G LSGG +QRIA RA
Sbjct: 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 579 --------------------------------RNYCGCGSPPYHYKNADITSVVKNGVIA 606
R + KNAD V++ G I
Sbjct: 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIV 222
Query: 607 EKGRHDALMKITDGTYASLTALH 629
E+G+H L+ + Y+ L L
Sbjct: 223 EQGKHKELLSEPESLYSYLYQLQ 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 58/230 (25%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLVS 132
V G T+ALVG SG+GKST++ L+ FRFY + + IG+V
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLL--FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 133 KEPIFLFCDFNE--GQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------ 184
++ + FN+ I YG+ A ++ + A Q A +I P G T V
Sbjct: 135 QDTVL----FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 185 --------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218
AT+A+D +ER +QA++ K+ N+T ++VA+ L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 219 TIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268
T+ NAD I+++ G IVE+G H+ L+ G Y+ + +LQ+G +E + +
Sbjct: 251 TVVNADQILVIKDGCIVERGRHEALLSRG-GVYADMWQLQQGQEETSEDT 299
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 72/210 (34%), Gaps = 87/210 (41%)
Query: 506 HTVALVGENGNGKSTVISLAERFHN-----------------------------PEQVIY 536
T+ALVG +G GKST++ L RF++ + V++
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 537 SWIIIKCTNF----------------------IASLPQGSDLNVGERGLQLSGGLKQRIA 574
+ I + I + P+G VGERGL+LSGG KQR+A
Sbjct: 141 NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA 200
Query: 575 RTRA-----------------------------------RNYCGCGSPPYHYKNADITSV 599
R R NAD V
Sbjct: 201 IARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILV 260
Query: 600 VKNGVIAEKGRHDALMKITDGTYASLTALH 629
+K+G I E+GRH+AL+ G YA + L
Sbjct: 261 IKDGCIVERGRHEALLS-RGGVYADMWQLQ 289
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 54/201 (26%)
Query: 94 TTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLVSKEPI 136
+ +A G SG GKST+ +L+E RFY P E + +IG VS++
Sbjct: 29 SIIAFAGPSGGGKSTIFSLLE--RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 137 FLFCDFNEGQYIPYGKQ-NASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------- 184
+ E + YG + + +DE + + LA A ++ +P L+T V
Sbjct: 87 IMAGTIREN--LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144
Query: 185 ---------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
AT ++D++SE +VQ A+ L+ +T +++A+ L TI +A
Sbjct: 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA 204
Query: 224 DCIIMVSKGKIVEKGTHDELI 244
D I + KG+I G H+EL+
Sbjct: 205 DKIYFIEKGQITGSGKHNELV 225
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 56/134 (41%)
Query: 501 DIVFE----HTVALVGENGNGKSTVISLAERFHNP------------------------- 531
DI FE +A G +G GKST+ SL ERF+ P
Sbjct: 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79
Query: 532 --------------EQVIYS----------WIIIKCT---NFIASLPQGSDLNVGERGLQ 564
E + Y W ++ +F+ ++P + VGERG++
Sbjct: 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK 139
Query: 565 LSGGLKQRIARTRA 578
+SGG +QR+A RA
Sbjct: 140 ISGGQRQRLAIARA 153
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 49/203 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLV------ESFRFYAPEAEQEKIGL---------VSKE 134
V G+ VA++G++GSGKST++NL+ E R E + + L V +E
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 135 PIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
+ E + +G+++A+D+ I A ++A I LP G D+ V
Sbjct: 426 TVLFSGTIKEN--LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222
T++VD +E+ + + + T I+ + T
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 223 ADCIIMVSKGKIVEKGTHDELIE 245
AD I+++ +GK+ GTH EL+E
Sbjct: 544 ADKILVLHEGKVAGFGTHKELLE 566
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 83/229 (36%), Gaps = 83/229 (36%)
Query: 467 KAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEHT------------------- 507
+A SA + E+L KP I+ + + + V G + FE+
Sbjct: 308 RASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSV 366
Query: 508 -----VALVGENGNGKSTVISLAERFHNPEQ----------------------------- 533
VA++GE G+GKST+++L R +PE+
Sbjct: 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426
Query: 534 VIYS--------W--------------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQ 571
V++S W I + +FI SLP+G D V G SGG KQ
Sbjct: 427 VLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486
Query: 572 RIARTRARNYCGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDG 620
R++ RA P D TS V I EK D L + T G
Sbjct: 487 RLSIARA-----LVKKPKVLILDDCTSSVDP--ITEKRILDGLKRYTKG 528
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 57/223 (25%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G ALVG +GSGKSTV L+++ Y P Q ++ V +EP
Sbjct: 43 GEVTALVGPNGSGKSTVAALLQN--LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP 100
Query: 136 IFLFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
E I YG Q + E I A + A I LP G DT V
Sbjct: 101 QVFGRSLQEN--IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGG 158
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITI 220
AT+A+DA S+ V+ + + +++V+++ L +
Sbjct: 159 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV 218
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
AD I+ + G I E GTH +L+E +G Y +V+ A E
Sbjct: 219 EQADHILFLEGGAIREGGTHQQLMEK-KGCYWAMVQAPADAPE 260
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 54/129 (41%)
Query: 508 VALVGENGNGKSTVISLAERFHNP------------------------------------ 531
ALVG NG+GKSTV +L + + P
Sbjct: 46 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR 105
Query: 532 ----------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIAR 575
E++ + + +FI+ LPQG D V E G QLSGG +Q +A
Sbjct: 106 SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVAL 165
Query: 576 TRA--RNYC 582
RA R C
Sbjct: 166 ARALIRKPC 174
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 57/215 (26%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G ALVG +GSGKSTV L+++ Y P + ++ V +EP
Sbjct: 45 GKVTALVGPNGSGKSTVAALLQN--LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP 102
Query: 136 IFLFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
+ F E I YG + + E I + A I P G DT V
Sbjct: 103 LLFGRSFREN--IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITI 220
AT+A+DA ++ VQ + + ++TV+++ + L
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLA 220
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255
A I+ + +G + E+GTH +L+E G Y +V
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMV 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI+ PQG D VGE G QLSGG +Q +A RA
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 509 ALVGENGNGKSTVISLAERFHNP 531
ALVG NG+GKSTV +L + + P
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQP 71
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 57/215 (26%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G ALVG +GSGKSTV L+++ Y P + ++ V +EP
Sbjct: 45 GKVTALVGPNGSGKSTVAALLQN--LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP 102
Query: 136 IFLFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
+ F E I YG + + E I + A I P G DT V
Sbjct: 103 LLFGRSFREN--IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITI 220
AT+A+DA ++ VQ + + ++TV+++ L
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255
A I+ + +G + E+GTH +L+E G Y +V
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMV 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI+ PQG D VGE G QLSGG +Q +A RA
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 509 ALVGENGNGKSTVISLAERFHNP 531
ALVG NG+GKSTV +L + + P
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQP 71
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 57/215 (26%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G ALVG +GSGKSTV L+++ Y P + ++ V +EP
Sbjct: 45 GKVTALVGPNGSGKSTVAALLQN--LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP 102
Query: 136 IFLFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
+ F E I YG + + E I + A I P G DT V
Sbjct: 103 LLFGRSFREN--IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVG 160
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITI 220
AT+A+DA ++ VQ + + ++TV+++ L
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA 220
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255
A I+ + +G + E+GTH +L+E G Y +V
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMV 254
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI+ PQG D VGE G QL+ G +Q +A RA
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARA 170
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 509 ALVGENGNGKSTVISLAERFHNP 531
ALVG NG+GKSTV +L + + P
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQP 71
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 41/213 (19%)
Query: 81 PYDNRFLQHVPSGTTVALVGQSGSGKSTVIN--LVESFRFYAPEAEQEKIGLVS------ 132
P N +P G VA+VGQ G GKS++++ L E + A + + V
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ 78
Query: 133 ----KEPIFLFCDFNEGQY---------------IPYGKQNASDEH-------IRPAVQL 166
+E I C E Y +P G + E + V L
Sbjct: 79 NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 138
Query: 167 ANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVK---LVTNQTVVIVANCLITIRNA 223
A A S + L D + +AVDA + + ++ ++ N+T ++V + + +
Sbjct: 139 ARAVYSNADIYLFDDPL---SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256
D II++S GKI E G++ EL+ +GA+++ +R
Sbjct: 196 DVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 532 EQVIYSWIIIKCTNF--IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPY 589
E+ Y +I C + LP G +GE+G+ LSGG KQR++ RA
Sbjct: 93 EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV---------- 142
Query: 590 HYKNADI 596
Y NADI
Sbjct: 143 -YSNADI 148
>pdb|3MMI|A Chain A, Crystal Structure Of The Globular Tail Of Myo4p
pdb|3MMI|B Chain B, Crystal Structure Of The Globular Tail Of Myo4p
Length = 386
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 405 IAEGYLKKKKNYERLHINAFCFFIGSKLVEH-GDATFGEVFKFLSEFGCFWC----LEST 459
I +L K + HI F + KL ++ GD F ++F FL+EF C ++S
Sbjct: 152 IYSTWLVKFMKHASAHIEIFDMVLNEKLFKNSGDEKFAKLFTFLNEFDAVLCKFQVVDSM 211
Query: 460 AVAPNADKAKGSAASIFEILESK-PKIDW 487
D K +F L +K P ++W
Sbjct: 212 HTKIFNDTLKYLNVMLFNDLITKCPALNW 240
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESF 116
H+ SG VA++G +G+GKST++ L+ +
Sbjct: 33 HIASGEMVAIIGPNGAGKSTLLRLLTGY 60
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLV 113
+P GT VA+ G SGSGKST++N V
Sbjct: 647 IPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLV 113
+P GT VA+ G SGSGKST++N V
Sbjct: 647 IPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLV 113
+P GT VA+ G SGSGKST++N V
Sbjct: 345 IPLGTFVAVTGVSGSGKSTLVNEV 368
>pdb|3PUM|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUM|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUN|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PUN|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PVD|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
pdb|3PVD|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
Length = 316
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLF-----CDF 142
Q P T A + +G T + RFY+ ++ E PI ++ DF
Sbjct: 117 QRGPGDATRAHEARIDTGSDTFAPKIGQVRFYSTSSDFETNQPTHFTPIGIYIEGNSSDF 176
Query: 143 NEGQYIPYGKQNASDEHIRPAV 164
N+ Q YG A++ H+ PAV
Sbjct: 177 NQWQLPRYGGHLANNNHLAPAV 198
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 89 HVPSGTTVALVGQSGSGKSTV---INLVESF 116
H+ G V ++G SGSGKST +NL+E F
Sbjct: 25 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 55
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 89 HVPSGTTVALVGQSGSGKSTV---INLVESF 116
H+ G V ++G SGSGKST +NL+E F
Sbjct: 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 89 HVPSGTTVALVGQSGSGKSTVI---NLVE 114
HVP+G ++G SG+GKST+I NL+E
Sbjct: 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 89 HVPSGTTVALVGQSGSGKSTVI---NLVE 114
HVP+G ++G SG+GKST+I NL+E
Sbjct: 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 55
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 89 HVPSGTTVALVGQSGSGKSTVI---NLVE 114
HVP+G ++G SG+GKST+I NL+E
Sbjct: 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV------SKGKIVEKGTHDELIE 245
+ER+++ TV++V + IRNAD II + + G++V +GT DEL++
Sbjct: 501 DTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560
Query: 246 DPEGAYS 252
+P+ + +
Sbjct: 561 NPDSSLT 567
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 95 TVALVGQSGSGKSTVINLVESFRFYAPE 122
T+ +VG+SG GKST+IN + Y+PE
Sbjct: 5 TLMVVGESGLGKSTLINSLFLTDLYSPE 32
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 95 TVALVGQSGSGKSTVINLVESFRFYAPE 122
T+ +VG+SG GKST+IN + Y+PE
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPE 37
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 95 TVALVGQSGSGKSTVINLVESFRFYAPE 122
T+ +VG+SG GKST+IN + Y+PE
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDLYSPE 60
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 486 DWSSKDGMTPSTVRGDIVFEHTVALVGENGNGKSTVISLAERF 528
++ + DG++ S +GD+ ++G NG+GKST+I++ F
Sbjct: 19 EFKALDGVSISVCKGDVTL-----IIGPNGSGKSTLINVITGF 56
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF 116
V G ++G +GSGKST+IN++ F
Sbjct: 30 VCKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV 113
++ G V+++G SGSGKST++N++
Sbjct: 27 NIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV 113
++ G V+++G SGSGKST++N++
Sbjct: 27 NIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ 533
+GDI+ A++G+NG GKST++ L H P Q
Sbjct: 30 KGDIL-----AVLGQNGCGKSTLLDLLLGIHRPIQ 59
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF 116
V G ++G +GSGKST+IN++ F
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 486 DWSSKDGMTPSTVRGDIVFEHTVALVGENGNGKSTVISLAERF 528
++ + DG++ S +GD+ ++G NG+GKST+I++ F
Sbjct: 19 EFKALDGVSISVNKGDVTL-----IIGPNGSGKSTLINVITGF 56
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF 116
V G ++G +GSGKST+IN++ F
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 486 DWSSKDGMTPSTVRGDIVFEHTVALVGENGNGKSTVISLAERF 528
++ + DG++ S +GD+ ++G NG+GKST+I++ F
Sbjct: 19 EFKALDGVSISVNKGDVTL-----IIGPNGSGKSTLINVITGF 56
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 98 LVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQY 147
L G SG G +I V+ ++ A EA KIG ++ E +F +F EG+Y
Sbjct: 176 LKGGSG-GTEELIEKVKKYKALAREAALSKIGELASE---IFAEFTEGKY 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,480,502
Number of Sequences: 62578
Number of extensions: 713669
Number of successful extensions: 2447
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2229
Number of HSP's gapped (non-prelim): 211
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)