Query 047286
Match_columns 632
No_of_seqs 582 out of 5664
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 16:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 8E-91 2.7E-95 842.0 56.9 623 2-631 243-1318(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3.6E-78 1.2E-82 729.8 50.2 624 2-631 215-1272(1284)
3 4f4c_A Multidrug resistance pr 100.0 7.7E-49 2.6E-53 475.2 39.1 281 349-630 193-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-42 4.1E-47 389.8 34.9 282 348-631 119-580 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 3.5E-42 1.2E-46 387.1 34.9 280 349-631 134-592 (598)
6 4a82_A Cystic fibrosis transme 100.0 1.1E-41 3.7E-46 381.9 33.5 281 348-630 117-577 (578)
7 3g5u_A MCG1178, multidrug resi 100.0 3.1E-41 1.1E-45 407.8 34.0 282 348-630 164-626 (1284)
8 3b5x_A Lipid A export ATP-bind 100.0 4E-40 1.4E-44 369.8 40.2 282 349-631 122-581 (582)
9 3b60_A Lipid A export ATP-bind 100.0 7.3E-40 2.5E-44 367.6 37.7 279 349-631 122-581 (582)
10 2yl4_A ATP-binding cassette SU 100.0 1.9E-39 6.6E-44 365.1 36.8 282 348-630 118-584 (595)
11 3qf4_A ABC transporter, ATP-bi 100.0 2.5E-34 8.6E-39 322.3 27.0 254 2-258 170-578 (587)
12 4a82_A Cystic fibrosis transme 100.0 4.1E-34 1.4E-38 320.5 28.3 254 2-258 168-576 (578)
13 3qf4_B Uncharacterized ABC tra 100.0 7E-34 2.4E-38 319.6 26.7 255 2-259 184-591 (598)
14 3ux8_A Excinuclease ABC, A sub 100.0 4E-34 1.4E-38 326.3 19.6 163 85-247 36-300 (670)
15 3b5x_A Lipid A export ATP-bind 100.0 5.2E-33 1.8E-37 312.0 28.3 254 2-258 172-579 (582)
16 3b60_A Lipid A export ATP-bind 100.0 6.1E-33 2.1E-37 311.4 27.1 254 2-258 172-579 (582)
17 3nh6_A ATP-binding cassette SU 100.0 1.7E-34 5.8E-39 295.7 11.8 169 461-631 14-291 (306)
18 2yl4_A ATP-binding cassette SU 100.0 1E-32 3.6E-37 310.3 25.5 255 2-258 169-583 (595)
19 3nh6_A ATP-binding cassette SU 100.0 3.5E-33 1.2E-37 285.9 15.8 203 54-259 13-290 (306)
20 2iw3_A Elongation factor 3A; a 100.0 2.9E-32 9.8E-37 314.1 17.6 157 86-245 454-635 (986)
21 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-30 1.4E-34 283.4 13.3 139 90-233 22-214 (538)
22 3bk7_A ABC transporter ATP-bin 100.0 6.5E-30 2.2E-34 285.5 14.4 141 86-232 111-304 (607)
23 3j16_B RLI1P; ribosome recycli 100.0 1E-29 3.5E-34 283.3 15.1 145 89-234 99-299 (608)
24 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-29 7.9E-34 278.3 16.5 141 86-232 41-234 (538)
25 2ff7_A Alpha-hemolysin translo 100.0 2.1E-27 7.1E-32 237.0 20.9 170 86-257 28-244 (247)
26 2ghi_A Transport protein; mult 99.9 1.4E-26 4.6E-31 232.9 18.5 171 85-258 38-254 (260)
27 1mv5_A LMRA, multidrug resista 99.9 8.4E-27 2.9E-31 232.4 11.5 168 85-255 20-235 (243)
28 2ixe_A Antigen peptide transpo 99.9 8.2E-26 2.8E-30 228.5 17.0 169 86-257 38-256 (271)
29 3tui_C Methionine import ATP-b 99.9 2.5E-26 8.4E-31 239.1 13.3 167 86-253 47-261 (366)
30 3gd7_A Fusion complex of cysti 99.9 8.7E-26 3E-30 238.3 15.0 165 86-253 40-250 (390)
31 3fvq_A Fe(3+) IONS import ATP- 99.9 3.6E-25 1.2E-29 230.3 16.8 167 86-253 23-236 (359)
32 3gfo_A Cobalt import ATP-bindi 99.9 1.5E-25 5E-30 226.5 13.1 160 85-246 26-234 (275)
33 3rlf_A Maltose/maltodextrin im 99.9 2E-25 7E-30 233.7 14.3 168 85-253 21-231 (381)
34 2pze_A Cystic fibrosis transme 99.9 3.4E-25 1.2E-29 218.7 13.3 159 85-246 26-219 (229)
35 2cbz_A Multidrug resistance-as 99.9 1.9E-25 6.5E-30 221.5 11.5 166 85-256 23-227 (237)
36 2ff7_A Alpha-hemolysin translo 99.9 3.6E-25 1.2E-29 220.8 13.3 129 501-629 31-245 (247)
37 3tif_A Uncharacterized ABC tra 99.9 1.4E-25 4.6E-30 222.3 10.1 157 85-243 23-232 (235)
38 2yyz_A Sugar ABC transporter, 99.9 1.2E-24 4.1E-29 227.1 16.6 167 85-252 21-230 (359)
39 2olj_A Amino acid ABC transpor 99.9 4.2E-25 1.4E-29 221.9 12.3 163 86-250 43-253 (263)
40 1b0u_A Histidine permease; ABC 99.9 3.6E-25 1.2E-29 222.7 11.8 165 86-251 25-248 (262)
41 1v43_A Sugar-binding transport 99.9 2.3E-24 7.8E-29 226.1 17.5 167 85-252 29-238 (372)
42 1oxx_K GLCV, glucose, ABC tran 99.9 1.4E-24 4.8E-29 226.8 15.3 167 85-252 23-237 (353)
43 1z47_A CYSA, putative ABC-tran 99.9 9.1E-25 3.1E-29 227.5 13.8 166 85-251 33-241 (355)
44 2it1_A 362AA long hypothetical 99.9 9.1E-25 3.1E-29 228.3 13.2 167 85-252 21-230 (362)
45 3d31_A Sulfate/molybdate ABC t 99.9 1E-24 3.4E-29 227.0 13.3 166 85-251 18-223 (348)
46 1ji0_A ABC transporter; ATP bi 99.9 1.1E-24 3.6E-29 216.7 12.3 158 86-245 25-228 (240)
47 2onk_A Molybdate/tungstate ABC 99.9 2E-24 7E-29 214.2 14.2 161 85-247 17-218 (240)
48 2ghi_A Transport protein; mult 99.9 1.6E-24 5.3E-29 217.9 12.3 129 501-630 42-255 (260)
49 4g1u_C Hemin import ATP-bindin 99.9 3.1E-24 1E-28 216.2 14.1 158 86-245 30-237 (266)
50 1g29_1 MALK, maltose transport 99.9 3.5E-24 1.2E-28 225.1 14.8 167 85-252 21-236 (372)
51 2nq2_C Hypothetical ABC transp 99.9 2E-24 6.8E-29 216.1 11.9 158 85-245 23-217 (253)
52 1vpl_A ABC transporter, ATP-bi 99.9 2.3E-24 7.8E-29 215.8 12.3 158 86-245 34-235 (256)
53 1mv5_A LMRA, multidrug resista 99.9 1E-24 3.5E-29 217.3 9.4 129 501-630 24-239 (243)
54 2yz2_A Putative ABC transporte 99.9 6.3E-24 2.2E-28 214.3 14.9 160 85-246 25-228 (266)
55 2qi9_C Vitamin B12 import ATP- 99.9 1.2E-23 4E-28 209.8 15.7 159 85-245 18-222 (249)
56 1g6h_A High-affinity branched- 99.9 3.6E-24 1.2E-28 215.1 12.1 155 86-242 26-239 (257)
57 3pih_A Uvrabc system protein A 99.9 1.1E-23 3.7E-28 242.9 16.6 77 171-247 460-562 (916)
58 2cbz_A Multidrug resistance-as 99.9 3.8E-24 1.3E-28 212.2 10.9 130 501-631 27-231 (237)
59 2ihy_A ABC transporter, ATP-bi 99.9 3.2E-24 1.1E-28 217.4 10.5 160 86-245 40-252 (279)
60 2ixe_A Antigen peptide transpo 99.9 3.9E-24 1.3E-28 216.2 10.8 124 505-629 45-257 (271)
61 2pcj_A ABC transporter, lipopr 99.9 4.6E-24 1.6E-28 209.8 10.9 153 86-239 23-222 (224)
62 2bbs_A Cystic fibrosis transme 99.9 1.2E-23 4E-28 214.2 12.2 154 86-245 57-247 (290)
63 2pze_A Cystic fibrosis transme 99.9 1.9E-23 6.6E-28 206.1 11.6 125 501-626 30-227 (229)
64 3gd7_A Fusion complex of cysti 99.9 1.5E-23 5E-28 221.3 11.3 120 505-624 47-250 (390)
65 2pjz_A Hypothetical protein ST 99.9 1.9E-23 6.5E-28 209.8 10.9 153 86-245 24-215 (263)
66 2d2e_A SUFC protein; ABC-ATPas 99.9 2.1E-23 7.1E-28 208.6 9.0 156 86-242 22-230 (250)
67 2zu0_C Probable ATP-dependent 99.9 8.3E-23 2.8E-27 206.1 9.8 158 86-244 39-253 (267)
68 2bbs_A Cystic fibrosis transme 99.9 6.1E-22 2.1E-26 201.5 10.3 121 505-626 64-256 (290)
69 2v9p_A Replication protein E1; 99.8 5.9E-24 2E-28 216.8 -7.1 180 436-629 38-275 (305)
70 3tui_C Methionine import ATP-b 99.8 4.2E-21 1.5E-25 199.7 10.9 117 506-624 55-261 (366)
71 1sgw_A Putative ABC transporte 99.8 1.1E-21 3.8E-26 190.7 3.8 146 86-234 28-210 (214)
72 3rlf_A Maltose/maltodextrin im 99.8 1.2E-20 4.1E-25 197.6 11.4 119 504-624 28-231 (381)
73 3fvq_A Fe(3+) IONS import ATP- 99.8 1.5E-20 5.2E-25 195.5 10.0 120 503-624 28-236 (359)
74 3gfo_A Cobalt import ATP-bindi 99.8 1.8E-20 6.2E-25 189.2 10.2 115 501-617 30-234 (275)
75 2ygr_A Uvrabc system protein A 99.8 4.7E-20 1.6E-24 211.8 13.6 76 171-246 517-618 (993)
76 2r6f_A Excinuclease ABC subuni 99.8 9.2E-20 3.1E-24 208.7 13.9 76 171-246 500-601 (972)
77 3tif_A Uncharacterized ABC tra 99.8 4.9E-20 1.7E-24 182.3 9.0 112 502-615 28-233 (235)
78 1ji0_A ABC transporter; ATP bi 99.8 3.4E-20 1.2E-24 184.1 7.8 116 501-617 28-229 (240)
79 4g1u_C Hemin import ATP-bindin 99.8 5.3E-20 1.8E-24 185.2 9.0 114 502-617 34-238 (266)
80 2it1_A 362AA long hypothetical 99.8 1.1E-19 3.8E-24 189.8 11.3 119 502-622 26-229 (362)
81 1z47_A CYSA, putative ABC-tran 99.8 1.6E-19 5.3E-24 188.0 11.9 120 501-622 37-241 (355)
82 2yyz_A Sugar ABC transporter, 99.8 1.2E-19 4E-24 189.4 10.0 118 503-622 27-229 (359)
83 2olj_A Amino acid ABC transpor 99.8 2.3E-19 8E-24 180.0 11.4 111 505-617 50-249 (263)
84 1v43_A Sugar-binding transport 99.8 1.7E-19 5.6E-24 189.2 10.5 116 505-622 37-237 (372)
85 2onk_A Molybdate/tungstate ABC 99.8 2.6E-19 9E-24 177.4 11.3 114 501-617 21-217 (240)
86 2vf7_A UVRA2, excinuclease ABC 99.8 7.9E-19 2.7E-23 200.9 15.3 77 170-246 374-476 (842)
87 1b0u_A Histidine permease; ABC 99.8 3.7E-19 1.3E-23 178.9 10.9 113 503-617 30-243 (262)
88 1vpl_A ABC transporter, ATP-bi 99.8 2.5E-19 8.4E-24 179.2 9.0 110 505-616 41-235 (256)
89 2pcj_A ABC transporter, lipopr 99.8 3.4E-19 1.2E-23 175.0 9.8 109 501-611 26-223 (224)
90 1g6h_A High-affinity branched- 99.8 2.7E-19 9.3E-24 179.5 9.2 111 501-613 29-239 (257)
91 3d31_A Sulfate/molybdate ABC t 99.8 2.7E-19 9.1E-24 186.2 9.2 119 502-622 23-223 (348)
92 1oxx_K GLCV, glucose, ABC tran 99.8 2.8E-19 9.7E-24 186.6 9.3 119 502-622 28-236 (353)
93 1yqt_A RNAse L inhibitor; ATP- 99.8 1.7E-19 5.8E-24 199.4 8.0 158 86-245 305-493 (538)
94 1g29_1 MALK, maltose transport 99.8 4.6E-19 1.6E-23 186.2 10.5 120 501-622 25-235 (372)
95 3bk7_A ABC transporter ATP-bin 99.8 2.8E-19 9.5E-24 199.7 9.2 158 86-245 375-563 (607)
96 2v9p_A Replication protein E1; 99.8 6.8E-21 2.3E-25 194.2 -4.7 180 47-256 56-273 (305)
97 2nq2_C Hypothetical ABC transp 99.8 1.3E-18 4.6E-23 173.8 9.4 121 501-626 27-225 (253)
98 2zu0_C Probable ATP-dependent 99.8 7.3E-19 2.5E-23 177.2 7.4 53 564-616 164-254 (267)
99 3j16_B RLI1P; ribosome recycli 99.7 1.7E-18 5.7E-23 193.0 9.9 159 86-246 366-560 (608)
100 2d2e_A SUFC protein; ABC-ATPas 99.7 2E-18 7E-23 172.4 9.1 126 501-628 25-245 (250)
101 2yz2_A Putative ABC transporte 99.7 2.3E-18 7.9E-23 173.5 9.5 114 502-617 30-228 (266)
102 2qi9_C Vitamin B12 import ATP- 99.7 1E-18 3.5E-23 174.0 6.6 114 501-616 22-222 (249)
103 1tf7_A KAIC; homohexamer, hexa 99.7 7.4E-19 2.5E-23 194.7 6.1 141 86-234 31-212 (525)
104 3ux8_A Excinuclease ABC, A sub 99.7 5.1E-18 1.8E-22 193.4 12.9 91 159-249 522-644 (670)
105 2pjz_A Hypothetical protein ST 99.7 6.4E-18 2.2E-22 169.5 10.1 116 498-617 24-216 (263)
106 3ozx_A RNAse L inhibitor; ATP 99.7 4.7E-18 1.6E-22 187.3 9.2 156 87-244 288-476 (538)
107 2ihy_A ABC transporter, ATP-bi 99.7 1.1E-17 3.9E-22 169.3 10.5 111 505-617 47-253 (279)
108 3pih_A Uvrabc system protein A 99.7 6.7E-17 2.3E-21 186.5 14.3 90 159-248 784-905 (916)
109 2iw3_A Elongation factor 3A; a 99.7 3E-17 1E-21 189.5 8.2 81 157-239 877-981 (986)
110 2r6f_A Excinuclease ABC subuni 99.6 1.6E-15 5.5E-20 173.8 11.9 89 160-248 825-945 (972)
111 2vf7_A UVRA2, excinuclease ABC 99.6 3E-15 1E-19 171.5 11.8 89 159-247 709-829 (842)
112 2ygr_A Uvrabc system protein A 99.6 4.5E-15 1.5E-19 170.7 13.3 88 161-248 844-963 (993)
113 1sgw_A Putative ABC transporte 99.6 9.4E-16 3.2E-20 148.9 4.0 103 501-606 31-211 (214)
114 1znw_A Guanylate kinase, GMP k 99.5 4.5E-16 1.5E-20 151.0 -0.3 142 88-230 15-202 (207)
115 2npi_A Protein CLP1; CLP1-PCF1 99.5 9.7E-17 3.3E-21 173.3 -7.6 154 86-244 131-337 (460)
116 4aby_A DNA repair protein RECN 99.5 4.7E-14 1.6E-18 151.7 8.4 53 186-238 325-381 (415)
117 2f1r_A Molybdopterin-guanine d 99.5 9.2E-16 3.1E-20 143.6 -4.6 71 507-581 4-120 (171)
118 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 6.9E-13 2.4E-17 139.7 12.0 66 171-236 275-364 (365)
119 2dpy_A FLII, flagellum-specifi 99.4 1.4E-14 4.8E-19 155.6 -4.2 151 86-245 151-344 (438)
120 4gp7_A Metallophosphoesterase; 99.4 2.3E-14 8E-19 134.5 -2.4 126 86-226 2-168 (171)
121 3b85_A Phosphate starvation-in 99.3 3.7E-13 1.3E-17 130.1 2.3 116 90-233 19-171 (208)
122 2obl_A ESCN; ATPase, hydrolase 99.3 2.1E-13 7E-18 142.2 -2.4 153 86-245 65-255 (347)
123 2npi_A Protein CLP1; CLP1-PCF1 99.3 2.6E-13 8.8E-18 146.6 -2.6 108 506-616 139-338 (460)
124 1z6g_A Guanylate kinase; struc 99.2 3.5E-13 1.2E-17 131.6 -4.4 140 85-231 15-193 (218)
125 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 1.8E-11 6.2E-16 128.8 7.1 48 560-607 275-364 (365)
126 4gp7_A Metallophosphoesterase; 99.2 1.2E-11 4.1E-16 115.8 5.1 78 502-580 6-99 (171)
127 2ehv_A Hypothetical protein PH 99.2 7.1E-12 2.4E-16 124.5 2.5 141 89-231 26-207 (251)
128 4a74_A DNA repair and recombin 99.1 1.4E-11 4.7E-16 120.8 3.5 139 90-233 22-201 (231)
129 4aby_A DNA repair protein RECN 99.1 2.9E-11 9.9E-16 129.8 6.3 45 565-609 296-381 (415)
130 1e69_A Chromosome segregation 99.1 2.4E-11 8.3E-16 125.8 5.5 50 186-235 251-302 (322)
131 1ye8_A Protein THEP1, hypothet 99.1 1.6E-12 5.6E-17 122.5 -3.6 72 507-578 2-90 (178)
132 1tq4_A IIGP1, interferon-induc 99.1 6.4E-12 2.2E-16 133.3 -0.3 135 86-226 42-247 (413)
133 1s96_A Guanylate kinase, GMP k 99.1 1.8E-11 6.2E-16 119.2 2.3 130 89-244 12-159 (219)
134 3sop_A Neuronal-specific septi 99.0 3.2E-10 1.1E-14 114.1 9.1 121 95-220 4-153 (270)
135 1e69_A Chromosome segregation 99.0 2.4E-10 8.2E-15 118.3 7.8 67 550-616 199-313 (322)
136 1lw7_A Transcriptional regulat 99.0 1.9E-12 6.5E-17 136.6 -9.5 154 86-244 161-354 (365)
137 3thx_A DNA mismatch repair pro 99.0 2.7E-10 9.4E-15 132.2 6.2 144 86-243 655-811 (934)
138 2pt7_A CAG-ALFA; ATPase, prote 99.0 3.2E-11 1.1E-15 125.1 -1.8 92 506-606 172-293 (330)
139 2o8b_B DNA mismatch repair pro 99.0 5.5E-10 1.9E-14 131.3 8.4 146 86-241 775-938 (1022)
140 1ye8_A Protein THEP1, hypothet 98.9 2.5E-10 8.7E-15 107.4 3.5 130 95-236 2-159 (178)
141 1z6g_A Guanylate kinase; struc 98.9 8.6E-11 2.9E-15 114.6 -0.4 30 500-529 18-47 (218)
142 2jeo_A Uridine-cytidine kinase 98.9 2.3E-10 8E-15 113.6 2.4 145 85-244 17-186 (245)
143 1lvg_A Guanylate kinase, GMP k 98.9 4.4E-11 1.5E-15 114.8 -3.0 129 91-231 2-173 (198)
144 3asz_A Uridine kinase; cytidin 98.9 2.2E-10 7.5E-15 110.9 1.6 121 90-217 3-161 (211)
145 2pt7_A CAG-ALFA; ATPase, prote 98.9 1.4E-10 4.8E-15 120.2 -1.9 125 86-234 164-292 (330)
146 1tf7_A KAIC; homohexamer, hexa 98.8 6.6E-10 2.3E-14 122.8 1.6 133 87-233 275-444 (525)
147 2dpy_A FLII, flagellum-specifi 98.8 3.3E-10 1.1E-14 121.6 -2.5 110 502-616 154-344 (438)
148 1wb9_A DNA mismatch repair pro 98.8 2.6E-09 8.7E-14 122.6 4.1 139 86-238 601-751 (800)
149 3c8u_A Fructokinase; YP_612366 98.8 1.2E-10 4.3E-15 112.5 -5.9 96 507-602 24-156 (208)
150 3b9q_A Chloroplast SRP recepto 98.7 5.2E-09 1.8E-13 106.8 4.5 139 86-235 93-285 (302)
151 3qkt_A DNA double-strand break 98.7 2.1E-08 7.3E-13 104.3 9.1 45 186-230 282-327 (339)
152 1pzn_A RAD51, DNA repair and r 98.7 6.3E-09 2.2E-13 108.6 4.9 153 86-243 124-313 (349)
153 1odf_A YGR205W, hypothetical 3 98.7 2.7E-10 9.3E-15 115.7 -5.6 72 507-578 33-148 (290)
154 1lw7_A Transcriptional regulat 98.7 2E-10 6.7E-15 121.1 -7.8 110 505-616 170-355 (365)
155 1cr0_A DNA primase/helicase; R 98.7 1.8E-08 6.1E-13 102.8 6.7 30 86-115 28-57 (296)
156 2o5v_A DNA replication and rep 98.7 1.6E-08 5.3E-13 105.6 6.2 53 186-243 302-354 (359)
157 1ewq_A DNA mismatch repair pro 98.7 1.2E-08 4.2E-13 116.3 5.8 132 86-237 572-716 (765)
158 3sop_A Neuronal-specific septi 98.7 1E-09 3.5E-14 110.3 -3.2 27 507-533 4-30 (270)
159 3aez_A Pantothenate kinase; tr 98.6 6.3E-10 2.1E-14 114.2 -5.2 93 506-602 91-226 (312)
160 3aez_A Pantothenate kinase; tr 98.6 4.2E-09 1.4E-13 108.1 0.9 92 90-185 87-186 (312)
161 2og2_A Putative signal recogni 98.6 2.4E-08 8.2E-13 104.0 6.4 141 85-234 149-341 (359)
162 2w0m_A SSO2452; RECA, SSPF, un 98.6 3.3E-08 1.1E-12 96.5 6.9 48 186-233 133-193 (235)
163 3thx_B DNA mismatch repair pro 98.6 2.3E-08 7.9E-13 115.8 6.5 136 86-235 666-815 (918)
164 3szr_A Interferon-induced GTP- 98.6 1.2E-08 4.1E-13 114.4 2.4 137 96-244 48-236 (608)
165 2obl_A ESCN; ATPase, hydrolase 98.6 3.2E-09 1.1E-13 110.4 -2.1 111 502-616 68-255 (347)
166 2gza_A Type IV secretion syste 98.6 1.2E-09 4.2E-14 114.6 -5.5 30 86-115 168-197 (361)
167 2eyu_A Twitching motility prot 98.6 1.4E-08 4.8E-13 101.5 2.0 119 90-231 22-147 (261)
168 2i3b_A HCR-ntpase, human cance 98.5 3.4E-08 1.2E-12 93.6 3.6 43 93-135 1-54 (189)
169 2bdt_A BH3686; alpha-beta prot 98.5 6E-09 2.1E-13 98.8 -2.7 54 187-243 126-182 (189)
170 2i3b_A HCR-ntpase, human cance 98.4 1.7E-09 5.9E-14 102.6 -7.9 102 506-609 2-169 (189)
171 2cvh_A DNA repair and recombin 98.4 1E-06 3.4E-11 85.2 11.1 39 90-135 17-55 (220)
172 1rj9_A FTSY, signal recognitio 98.4 1.2E-07 4.2E-12 96.7 4.0 123 92-219 101-260 (304)
173 3qkt_A DNA double-strand break 98.4 4.3E-07 1.5E-11 94.4 7.9 25 501-525 18-43 (339)
174 3tr0_A Guanylate kinase, GMP k 98.4 6.9E-08 2.4E-12 92.5 1.4 30 87-116 1-30 (205)
175 1htw_A HI0065; nucleotide-bind 98.4 6.7E-08 2.3E-12 88.8 1.2 32 86-117 26-57 (158)
176 2ewv_A Twitching motility prot 98.4 4.4E-08 1.5E-12 103.1 -0.4 26 90-115 133-158 (372)
177 1u0l_A Probable GTPase ENGC; p 98.4 1.8E-07 6.1E-12 95.6 4.1 90 88-178 164-290 (301)
178 2qag_B Septin-6, protein NEDD5 98.3 9.9E-08 3.4E-12 101.1 1.6 66 86-152 33-107 (427)
179 1n0w_A DNA repair protein RAD5 98.3 1.2E-06 4.2E-11 85.9 8.3 26 90-115 21-46 (243)
180 1nlf_A Regulatory protein REPA 98.3 2.8E-07 9.4E-12 93.1 3.1 27 89-115 26-52 (279)
181 3jvv_A Twitching mobility prot 98.2 6.2E-07 2.1E-11 93.5 5.3 126 89-232 119-246 (356)
182 2rcn_A Probable GTPase ENGC; Y 98.2 7.3E-07 2.5E-11 92.5 5.3 26 507-532 217-243 (358)
183 1tq4_A IIGP1, interferon-induc 98.2 3.5E-07 1.2E-11 97.0 2.3 27 507-533 71-97 (413)
184 2qnr_A Septin-2, protein NEDD5 98.2 1.3E-06 4.4E-11 89.2 6.5 122 86-218 17-168 (301)
185 3kta_A Chromosome segregation 98.2 2.3E-06 8E-11 80.1 7.0 116 85-203 19-168 (182)
186 2gza_A Type IV secretion syste 98.1 1.6E-06 5.4E-11 90.8 5.4 73 506-578 176-301 (361)
187 3lnc_A Guanylate kinase, GMP k 98.1 6.3E-07 2.1E-11 87.7 2.1 32 85-116 19-51 (231)
188 2yv5_A YJEQ protein; hydrolase 98.1 2.2E-06 7.4E-11 87.5 5.6 49 88-137 160-226 (302)
189 1zp6_A Hypothetical protein AT 98.1 9.6E-07 3.3E-11 83.4 2.4 24 506-529 10-33 (191)
190 2oap_1 GSPE-2, type II secreti 98.1 3.8E-08 1.3E-12 107.6 -8.5 31 86-116 253-283 (511)
191 1cr0_A DNA primase/helicase; R 98.1 4.8E-06 1.6E-10 84.7 7.6 35 498-532 28-62 (296)
192 3lda_A DNA repair protein RAD5 98.1 4.7E-06 1.6E-10 88.1 7.6 25 89-113 174-198 (400)
193 1f2t_B RAD50 ABC-ATPase; DNA d 98.1 3.4E-06 1.2E-10 76.3 5.5 53 553-605 41-142 (148)
194 3c8u_A Fructokinase; YP_612366 98.1 1E-06 3.4E-11 84.8 2.0 46 90-139 19-64 (208)
195 3ec2_A DNA replication protein 98.0 3.4E-06 1.2E-10 78.9 5.2 33 186-218 111-144 (180)
196 2f1r_A Molybdopterin-guanine d 98.0 1.4E-06 4.8E-11 81.0 2.3 73 94-186 3-102 (171)
197 3thx_A DNA mismatch repair pro 98.0 7E-07 2.4E-11 103.8 0.2 99 506-615 663-812 (934)
198 2qag_C Septin-7; cell cycle, c 98.0 3.8E-06 1.3E-10 89.3 5.7 58 86-151 30-99 (418)
199 3kta_B Chromosome segregation 98.0 3.9E-06 1.3E-10 78.0 4.8 45 562-606 62-147 (173)
200 3e70_C DPA, signal recognition 98.0 1.6E-06 5.3E-11 89.4 2.0 50 186-235 246-307 (328)
201 2rcn_A Probable GTPase ENGC; Y 98.0 2.1E-06 7.2E-11 89.0 2.5 109 91-204 213-344 (358)
202 4e22_A Cytidylate kinase; P-lo 97.9 1.7E-05 5.8E-10 78.6 8.2 24 91-114 25-48 (252)
203 1nij_A Hypothetical protein YJ 97.9 1.3E-06 4.5E-11 89.8 -0.6 46 173-218 139-190 (318)
204 3jvv_A Twitching mobility prot 97.9 1.6E-07 5.4E-12 98.0 -7.7 26 507-532 125-150 (356)
205 1sxj_E Activator 1 40 kDa subu 97.9 1.7E-05 5.7E-10 82.6 7.1 114 96-219 39-176 (354)
206 3euj_A Chromosome partition pr 97.9 6.8E-06 2.3E-10 88.5 4.0 31 85-116 22-52 (483)
207 2o5v_A DNA replication and rep 97.8 9.2E-06 3.1E-10 84.6 4.8 49 564-615 265-355 (359)
208 2qm8_A GTPase/ATPase; G protei 97.8 1.2E-06 4E-11 90.9 -2.1 30 86-115 48-77 (337)
209 1zp6_A Hypothetical protein AT 97.8 6.8E-06 2.3E-10 77.5 3.3 28 89-116 5-32 (191)
210 1f2t_B RAD50 ABC-ATPase; DNA d 97.8 2.3E-05 7.7E-10 70.9 6.0 50 185-234 90-142 (148)
211 2kjq_A DNAA-related protein; s 97.8 2.1E-05 7.1E-10 71.3 5.6 24 92-115 35-58 (149)
212 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.7E-10 77.0 3.8 29 88-116 1-29 (207)
213 2px0_A Flagellar biosynthesis 97.8 1.4E-05 4.8E-10 81.1 4.5 131 91-237 103-247 (296)
214 1znw_A Guanylate kinase, GMP k 97.7 8.5E-06 2.9E-10 78.2 2.4 30 501-530 16-45 (207)
215 2dr3_A UPF0273 protein PH0284; 97.7 3.5E-05 1.2E-09 75.5 6.8 24 90-113 20-43 (247)
216 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.1E-10 74.6 3.7 25 91-115 3-27 (180)
217 1odf_A YGR205W, hypothetical 3 97.7 1.6E-06 5.4E-11 87.9 -3.6 49 92-142 30-79 (290)
218 1t9h_A YLOQ, probable GTPase E 97.7 6.5E-06 2.2E-10 83.7 0.7 29 88-116 168-196 (307)
219 3a00_A Guanylate kinase, GMP k 97.7 1.5E-05 5.1E-10 75.1 2.9 24 93-116 1-24 (186)
220 1lvg_A Guanylate kinase, GMP k 97.7 1.1E-05 3.7E-10 76.9 1.9 25 506-530 5-29 (198)
221 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 3.3E-06 1.1E-10 88.9 -2.2 52 187-240 152-208 (392)
222 3b85_A Phosphate starvation-in 97.7 1.1E-05 3.7E-10 77.5 1.6 31 502-533 19-49 (208)
223 2eyu_A Twitching motility prot 97.6 1.2E-05 3.9E-10 80.2 1.7 31 502-532 22-52 (261)
224 2yhs_A FTSY, cell division pro 97.6 1.3E-05 4.5E-10 86.0 2.2 53 85-137 285-358 (503)
225 2qt1_A Nicotinamide riboside k 97.6 3E-05 1E-09 74.2 4.5 43 89-139 17-59 (207)
226 1qhl_A Protein (cell division 97.6 3.2E-06 1.1E-10 82.2 -2.7 29 87-116 22-50 (227)
227 1kgd_A CASK, peripheral plasma 97.6 2.2E-05 7.4E-10 73.5 2.8 24 507-530 7-30 (180)
228 1htw_A HI0065; nucleotide-bind 97.6 1.5E-05 5E-10 73.0 1.3 27 506-533 34-60 (158)
229 4eun_A Thermoresistant glucoki 97.5 3.9E-05 1.3E-09 73.1 3.7 27 89-115 25-51 (200)
230 1s96_A Guanylate kinase, GMP k 97.5 3E-05 1E-09 75.1 2.7 29 503-531 14-42 (219)
231 3vaa_A Shikimate kinase, SK; s 97.5 4.4E-05 1.5E-09 72.6 3.6 30 85-114 17-46 (199)
232 3asz_A Uridine kinase; cytidin 97.5 2.8E-05 9.6E-10 74.5 2.1 25 506-530 7-31 (211)
233 3tau_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 72.9 3.8 25 91-115 6-30 (208)
234 3tr0_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 73.4 2.6 24 506-529 8-31 (205)
235 3a00_A Guanylate kinase, GMP k 97.5 3.3E-05 1.1E-09 72.7 2.3 24 507-530 3-26 (186)
236 3szr_A Interferon-induced GTP- 97.4 8.1E-05 2.8E-09 83.3 5.1 24 508-531 48-71 (608)
237 1sq5_A Pantothenate kinase; P- 97.4 5.3E-05 1.8E-09 77.4 3.2 27 90-116 77-103 (308)
238 3uie_A Adenylyl-sulfate kinase 97.4 6E-05 2E-09 71.7 3.3 27 89-115 21-47 (200)
239 1udx_A The GTP-binding protein 97.4 6.8E-05 2.3E-09 79.6 3.9 50 86-135 150-203 (416)
240 3lnc_A Guanylate kinase, GMP k 97.4 4E-05 1.4E-09 74.7 2.1 29 501-529 23-52 (231)
241 3ney_A 55 kDa erythrocyte memb 97.4 7.9E-05 2.7E-09 70.5 3.6 29 86-114 12-40 (197)
242 2o8b_B DNA mismatch repair pro 97.4 2.4E-05 8.3E-10 92.0 -0.5 25 506-531 790-814 (1022)
243 4a74_A DNA repair and recombin 97.4 7.4E-05 2.5E-09 72.4 3.0 31 499-529 19-49 (231)
244 3kta_B Chromosome segregation 97.3 0.00019 6.3E-09 66.6 5.1 50 185-234 95-146 (173)
245 2vp4_A Deoxynucleoside kinase; 97.3 7.1E-05 2.4E-09 72.9 2.4 27 90-116 17-43 (230)
246 2j41_A Guanylate kinase; GMP, 97.3 7.3E-05 2.5E-09 71.1 2.3 26 506-531 7-32 (207)
247 4ad8_A DNA repair protein RECN 97.3 0.00014 4.8E-09 79.8 4.5 28 86-114 54-81 (517)
248 2bbw_A Adenylate kinase 4, AK4 97.3 0.00013 4.3E-09 71.9 3.7 23 92-114 26-48 (246)
249 3tau_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 70.4 3.1 25 507-531 10-34 (208)
250 1vma_A Cell division protein F 97.3 0.00016 5.5E-09 73.5 4.4 69 506-581 105-185 (306)
251 3ney_A 55 kDa erythrocyte memb 97.3 0.0001 3.5E-09 69.7 2.8 24 507-530 21-44 (197)
252 1knq_A Gluconate kinase; ALFA/ 97.3 0.00012 4.1E-09 67.8 3.2 24 91-114 6-29 (175)
253 2dy1_A Elongation factor G; tr 97.2 0.00028 9.7E-09 79.7 6.6 118 87-219 3-138 (665)
254 2ewv_A Twitching motility prot 97.2 7.9E-05 2.7E-09 78.2 1.7 27 506-532 137-163 (372)
255 1kag_A SKI, shikimate kinase I 97.2 0.00015 5.1E-09 66.9 3.1 24 92-115 3-26 (173)
256 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00021 7.2E-09 64.6 3.9 28 86-114 17-44 (149)
257 1rj9_A FTSY, signal recognitio 97.2 8.9E-05 3E-09 75.4 1.5 26 507-532 104-129 (304)
258 1pui_A ENGB, probable GTP-bind 97.2 6.3E-05 2.1E-09 71.7 0.3 29 88-116 21-49 (210)
259 4e22_A Cytidylate kinase; P-lo 97.2 0.00012 4E-09 72.5 2.3 27 507-533 29-58 (252)
260 1p9r_A General secretion pathw 97.2 0.00017 5.7E-09 76.6 3.3 26 91-116 165-190 (418)
261 2jeo_A Uridine-cytidine kinase 97.1 0.0001 3.5E-09 72.6 1.5 27 502-528 22-48 (245)
262 3euj_A Chromosome partition pr 97.1 0.00012 4.1E-09 78.9 2.0 28 506-533 30-57 (483)
263 3tqc_A Pantothenate kinase; bi 97.1 0.00019 6.3E-09 73.4 2.9 40 95-136 94-133 (321)
264 3b9q_A Chloroplast SRP recepto 97.1 0.00013 4.5E-09 74.1 1.7 29 505-533 100-128 (302)
265 1rz3_A Hypothetical protein rb 97.1 0.00022 7.6E-09 67.8 3.2 26 90-115 19-44 (201)
266 1cke_A CK, MSSA, protein (cyti 97.1 0.00015 5.3E-09 70.0 2.0 23 507-529 7-29 (227)
267 1svm_A Large T antigen; AAA+ f 97.1 0.00012 4.2E-09 76.5 1.4 30 86-115 162-191 (377)
268 1w1w_A Structural maintenance 97.1 0.00028 9.6E-09 75.5 4.1 30 87-116 20-49 (430)
269 1sq5_A Pantothenate kinase; P- 97.0 0.00018 6.2E-09 73.4 2.2 24 507-530 82-105 (308)
270 3lda_A DNA repair protein RAD5 97.0 0.0013 4.5E-08 69.3 8.7 27 499-525 172-198 (400)
271 3nwj_A ATSK2; P loop, shikimat 97.0 8.2E-05 2.8E-09 73.4 -0.5 29 86-114 38-69 (250)
272 2ehv_A Hypothetical protein PH 97.0 0.00023 7.9E-09 69.7 2.6 29 498-526 23-51 (251)
273 1u0l_A Probable GTPase ENGC; p 97.0 0.00027 9.1E-09 71.9 3.1 29 505-533 169-197 (301)
274 2zr9_A Protein RECA, recombina 97.0 0.0041 1.4E-07 64.4 11.8 26 89-114 57-82 (349)
275 1kag_A SKI, shikimate kinase I 97.0 0.00025 8.7E-09 65.3 2.4 25 507-531 6-30 (173)
276 3uie_A Adenylyl-sulfate kinase 97.0 0.00032 1.1E-08 66.6 2.9 24 506-529 26-49 (200)
277 2bbw_A Adenylate kinase 4, AK4 96.9 0.00037 1.3E-08 68.4 3.2 27 506-532 28-57 (246)
278 2x8a_A Nuclear valosin-contain 96.9 0.0002 6.8E-09 71.8 1.1 28 86-115 39-66 (274)
279 3thx_B DNA mismatch repair pro 96.9 0.00021 7.3E-09 82.8 1.5 27 501-527 665-695 (918)
280 2qag_B Septin-6, protein NEDD5 96.9 0.00029 1E-08 74.5 2.3 29 501-529 36-66 (427)
281 2og2_A Putative signal recogni 96.9 0.00024 8.3E-09 73.7 1.6 28 506-533 158-185 (359)
282 2qt1_A Nicotinamide riboside k 96.9 0.00048 1.6E-08 65.6 3.5 25 505-529 21-45 (207)
283 2bdt_A BH3686; alpha-beta prot 96.9 0.00045 1.5E-08 64.8 3.2 22 506-527 3-24 (189)
284 4eun_A Thermoresistant glucoki 96.9 0.00031 1.1E-08 66.7 2.0 23 506-528 30-52 (200)
285 3e70_C DPA, signal recognition 96.9 0.00026 8.8E-09 72.7 1.5 28 506-533 130-157 (328)
286 2oap_1 GSPE-2, type II secreti 96.8 0.00044 1.5E-08 75.4 3.2 26 507-532 262-287 (511)
287 2qor_A Guanylate kinase; phosp 96.8 0.00046 1.6E-08 65.7 2.8 26 89-114 8-33 (204)
288 1p9r_A General secretion pathw 96.8 0.00037 1.3E-08 73.9 2.2 26 507-532 169-194 (418)
289 1cke_A CK, MSSA, protein (cyti 96.8 0.00066 2.3E-08 65.5 3.6 24 92-115 4-27 (227)
290 3cr8_A Sulfate adenylyltranfer 96.7 0.00048 1.6E-08 75.7 2.6 27 89-115 365-391 (552)
291 2pez_A Bifunctional 3'-phospho 96.7 0.00069 2.4E-08 62.9 3.4 24 91-114 3-26 (179)
292 3tqc_A Pantothenate kinase; bi 96.7 0.00044 1.5E-08 70.6 2.2 24 507-530 94-117 (321)
293 1ixz_A ATP-dependent metallopr 96.7 0.00034 1.2E-08 69.0 1.2 28 86-115 44-71 (254)
294 2yhs_A FTSY, cell division pro 96.7 0.00041 1.4E-08 74.5 1.5 27 506-532 294-320 (503)
295 1t9h_A YLOQ, probable GTPase E 96.7 0.00031 1.1E-08 71.3 0.6 28 506-533 174-201 (307)
296 1qhl_A Protein (cell division 96.7 9.3E-05 3.2E-09 71.8 -3.3 27 507-533 29-55 (227)
297 1pui_A ENGB, probable GTP-bind 96.7 0.00065 2.2E-08 64.5 2.6 25 505-529 26-50 (210)
298 1rz3_A Hypothetical protein rb 96.7 0.00049 1.7E-08 65.4 1.7 25 507-531 24-48 (201)
299 3qks_A DNA double-strand break 96.7 0.00098 3.3E-08 63.5 3.8 28 86-114 17-44 (203)
300 1iy2_A ATP-dependent metallopr 96.7 0.00042 1.4E-08 69.4 1.2 28 86-115 68-95 (278)
301 1y63_A LMAJ004144AAA protein; 96.6 0.00084 2.9E-08 62.7 3.2 29 86-114 3-31 (184)
302 2yv5_A YJEQ protein; hydrolase 96.6 0.00081 2.8E-08 68.3 3.3 27 506-533 166-192 (302)
303 1knq_A Gluconate kinase; ALFA/ 96.6 0.00081 2.8E-08 62.1 2.8 22 507-528 10-31 (175)
304 4ad8_A DNA repair protein RECN 96.6 0.0017 5.6E-08 71.3 5.6 49 185-233 426-474 (517)
305 2vp4_A Deoxynucleoside kinase; 96.6 0.00082 2.8E-08 65.3 2.9 23 506-528 21-43 (230)
306 3kta_A Chromosome segregation 96.6 0.00084 2.9E-08 62.4 2.8 31 501-531 21-52 (182)
307 1oix_A RAS-related protein RAB 96.6 0.0011 3.9E-08 62.1 3.6 24 95-118 31-54 (191)
308 1jjv_A Dephospho-COA kinase; P 96.6 0.00098 3.3E-08 63.4 3.1 22 507-528 4-25 (206)
309 1jjv_A Dephospho-COA kinase; P 96.6 0.0011 3.6E-08 63.1 3.2 21 95-115 4-24 (206)
310 2kjq_A DNAA-related protein; s 96.5 0.00051 1.7E-08 62.0 0.9 28 504-531 35-62 (149)
311 1oix_A RAS-related protein RAB 96.5 0.0012 3.9E-08 62.0 3.3 25 507-531 31-55 (191)
312 2qm8_A GTPase/ATPase; G protei 96.5 0.00062 2.1E-08 70.3 1.5 26 506-531 56-81 (337)
313 1vma_A Cell division protein F 96.5 0.0008 2.7E-08 68.3 2.2 46 86-135 97-142 (306)
314 3vaa_A Shikimate kinase, SK; s 96.5 0.00091 3.1E-08 63.3 2.4 23 505-527 25-47 (199)
315 2qor_A Guanylate kinase; phosp 96.5 0.001 3.6E-08 63.2 2.5 23 507-529 14-36 (204)
316 2f9l_A RAB11B, member RAS onco 96.4 0.0015 5.3E-08 61.5 3.6 24 95-118 7-30 (199)
317 2qag_C Septin-7; cell cycle, c 96.4 0.0013 4.4E-08 69.7 3.3 24 507-530 33-56 (418)
318 2if2_A Dephospho-COA kinase; a 96.4 0.0013 4.5E-08 62.3 3.0 22 507-528 3-24 (204)
319 2if2_A Dephospho-COA kinase; a 96.4 0.0014 4.9E-08 62.0 3.2 21 95-115 3-23 (204)
320 1wb9_A DNA mismatch repair pro 96.4 0.00067 2.3E-08 77.9 1.0 28 501-528 600-630 (800)
321 2qnr_A Septin-2, protein NEDD5 96.4 0.0014 4.8E-08 66.5 3.0 26 507-532 20-46 (301)
322 4eaq_A DTMP kinase, thymidylat 96.3 0.0016 5.5E-08 63.2 3.1 29 86-114 16-47 (229)
323 2gj8_A MNME, tRNA modification 96.3 0.0018 6.1E-08 59.6 3.1 26 91-116 2-27 (172)
324 1nij_A Hypothetical protein YJ 96.3 0.0016 5.3E-08 66.7 2.9 23 507-529 6-28 (318)
325 1zu4_A FTSY; GTPase, signal re 96.3 0.0012 4.1E-08 67.6 2.0 30 85-114 97-126 (320)
326 2f9l_A RAB11B, member RAS onco 96.3 0.0018 6.1E-08 61.0 2.9 23 507-529 7-29 (199)
327 1pzn_A RAD51, DNA repair and r 96.3 0.0018 6.2E-08 67.1 3.2 31 499-529 125-155 (349)
328 3cm0_A Adenylate kinase; ATP-b 96.3 0.0017 6E-08 60.3 2.8 24 91-114 2-25 (186)
329 1in4_A RUVB, holliday junction 96.2 0.00051 1.7E-08 70.9 -1.3 122 94-221 52-206 (334)
330 3kb2_A SPBC2 prophage-derived 96.2 0.002 6.7E-08 59.0 2.9 22 507-528 3-24 (173)
331 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0021 7.1E-08 57.9 3.0 26 501-526 18-44 (149)
332 3t61_A Gluconokinase; PSI-biol 96.2 0.002 6.9E-08 60.9 3.0 22 93-114 18-39 (202)
333 3t61_A Gluconokinase; PSI-biol 96.2 0.0019 6.4E-08 61.2 2.6 22 507-528 20-41 (202)
334 1m7g_A Adenylylsulfate kinase; 96.2 0.0021 7.3E-08 61.3 2.8 25 90-114 22-46 (211)
335 2yvu_A Probable adenylyl-sulfa 96.1 0.0026 8.9E-08 59.3 3.3 25 90-114 10-34 (186)
336 2zej_A Dardarin, leucine-rich 96.1 0.0024 8.3E-08 59.3 3.1 23 507-529 4-26 (184)
337 1qhx_A CPT, protein (chloramph 96.1 0.003 1E-07 58.2 3.6 22 93-114 3-24 (178)
338 1uf9_A TT1252 protein; P-loop, 96.1 0.0025 8.4E-08 60.1 3.1 22 507-528 10-31 (203)
339 3nwj_A ATSK2; P loop, shikimat 96.1 0.0016 5.5E-08 64.1 1.7 23 505-527 48-70 (250)
340 1gtv_A TMK, thymidylate kinase 96.1 0.0011 3.7E-08 63.3 0.4 23 507-529 2-24 (214)
341 3lw7_A Adenylate kinase relate 96.1 0.0025 8.6E-08 58.2 2.9 20 507-526 3-22 (179)
342 2wji_A Ferrous iron transport 96.1 0.0026 9E-08 57.9 3.0 22 507-528 5-26 (165)
343 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.002 7E-08 62.0 2.4 31 500-530 18-48 (235)
344 3kb2_A SPBC2 prophage-derived 96.0 0.0032 1.1E-07 57.6 3.3 21 94-114 2-22 (173)
345 2www_A Methylmalonic aciduria 96.0 0.003 1E-07 65.5 3.5 41 92-136 73-113 (349)
346 2gj8_A MNME, tRNA modification 96.0 0.003 1E-07 58.1 3.1 23 507-529 6-28 (172)
347 3ec2_A DNA replication protein 96.0 0.0026 8.8E-08 59.0 2.4 26 506-531 39-64 (180)
348 1qhx_A CPT, protein (chloramph 96.0 0.0031 1E-07 58.2 2.9 23 507-529 5-27 (178)
349 1ex7_A Guanylate kinase; subst 96.0 0.0028 9.4E-08 59.4 2.5 20 508-527 4-23 (186)
350 1np6_A Molybdopterin-guanine d 95.9 0.0032 1.1E-07 58.2 2.8 23 507-529 8-30 (174)
351 2jaq_A Deoxyguanosine kinase; 95.9 0.0032 1.1E-07 59.3 2.8 21 507-527 2-22 (205)
352 1ega_A Protein (GTP-binding pr 95.9 0.0025 8.5E-08 64.6 2.2 25 92-116 7-31 (301)
353 1n0w_A DNA repair protein RAD5 95.9 0.0028 9.5E-08 61.6 2.4 29 499-527 18-46 (243)
354 2pez_A Bifunctional 3'-phospho 95.9 0.0035 1.2E-07 58.0 2.9 24 506-529 6-29 (179)
355 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 57.8 3.5 23 92-114 2-24 (192)
356 1q3t_A Cytidylate kinase; nucl 95.9 0.0043 1.5E-07 60.3 3.6 25 90-114 13-37 (236)
357 3lw7_A Adenylate kinase relate 95.8 0.004 1.4E-07 56.8 3.1 20 95-114 3-22 (179)
358 3r20_A Cytidylate kinase; stru 95.8 0.0036 1.2E-07 60.7 2.9 22 507-528 11-32 (233)
359 1ls1_A Signal recognition part 95.8 0.0031 1.1E-07 63.7 2.4 44 86-135 93-136 (295)
360 2wji_A Ferrous iron transport 95.8 0.0043 1.5E-07 56.4 3.2 23 95-117 5-27 (165)
361 2rhm_A Putative kinase; P-loop 95.8 0.0041 1.4E-07 58.0 3.1 24 91-114 3-26 (193)
362 3auy_A DNA double-strand break 95.8 0.0076 2.6E-07 62.9 5.3 28 86-114 19-46 (371)
363 3r20_A Cytidylate kinase; stru 95.8 0.0045 1.6E-07 60.0 3.3 41 189-229 109-152 (233)
364 1np6_A Molybdopterin-guanine d 95.8 0.0047 1.6E-07 57.1 3.2 22 93-114 6-27 (174)
365 1ex7_A Guanylate kinase; subst 95.8 0.0042 1.4E-07 58.1 2.9 19 96-114 4-22 (186)
366 2x8a_A Nuclear valosin-contain 95.8 0.0034 1.2E-07 62.7 2.3 24 508-531 47-70 (274)
367 1vht_A Dephospho-COA kinase; s 95.7 0.0044 1.5E-07 59.4 2.9 22 507-528 6-27 (218)
368 2p67_A LAO/AO transport system 95.7 0.0022 7.5E-08 66.3 0.8 46 86-135 49-94 (341)
369 3trf_A Shikimate kinase, SK; a 95.7 0.0045 1.5E-07 57.5 2.9 21 507-527 7-27 (185)
370 3cr8_A Sulfate adenylyltranfer 95.7 0.002 7E-08 70.7 0.5 26 506-531 370-395 (552)
371 2cvh_A DNA repair and recombin 95.7 0.0029 9.8E-08 60.4 1.5 28 500-527 15-42 (220)
372 2ze6_A Isopentenyl transferase 95.7 0.0044 1.5E-07 61.1 2.9 22 507-528 3-24 (253)
373 1ly1_A Polynucleotide kinase; 95.7 0.0048 1.6E-07 56.8 2.9 21 507-527 4-24 (181)
374 3trf_A Shikimate kinase, SK; a 95.6 0.0061 2.1E-07 56.6 3.5 23 92-114 4-26 (185)
375 3cm0_A Adenylate kinase; ATP-b 95.6 0.0049 1.7E-07 57.2 2.8 21 507-527 6-26 (186)
376 2wjg_A FEOB, ferrous iron tran 95.6 0.0052 1.8E-07 56.9 3.0 22 507-528 9-30 (188)
377 1via_A Shikimate kinase; struc 95.6 0.0046 1.6E-07 56.9 2.6 22 507-528 6-27 (175)
378 3ice_A Transcription terminati 95.6 0.0031 1.1E-07 65.2 1.5 29 86-114 167-195 (422)
379 2v54_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 57.4 3.5 24 91-114 2-25 (204)
380 3hr8_A Protein RECA; alpha and 95.6 0.0059 2E-07 63.1 3.5 25 90-114 58-82 (356)
381 1vht_A Dephospho-COA kinase; s 95.5 0.0061 2.1E-07 58.3 3.2 24 92-115 3-26 (218)
382 1kht_A Adenylate kinase; phosp 95.5 0.0056 1.9E-07 56.9 2.8 22 507-528 5-26 (192)
383 3lxx_A GTPase IMAP family memb 95.5 0.0057 2E-07 59.5 3.0 23 507-529 31-53 (239)
384 1nks_A Adenylate kinase; therm 95.5 0.006 2.1E-07 56.7 3.0 23 507-529 3-25 (194)
385 2jaq_A Deoxyguanosine kinase; 95.5 0.0067 2.3E-07 57.1 3.3 20 95-114 2-21 (205)
386 3iij_A Coilin-interacting nucl 95.5 0.0064 2.2E-07 56.2 3.0 24 91-114 9-32 (180)
387 1m7g_A Adenylylsulfate kinase; 95.5 0.0042 1.4E-07 59.3 1.7 25 506-530 26-50 (211)
388 3qks_A DNA double-strand break 95.5 0.007 2.4E-07 57.5 3.3 26 501-526 18-44 (203)
389 2c95_A Adenylate kinase 1; tra 95.5 0.0072 2.5E-07 56.5 3.3 24 91-114 7-30 (196)
390 2www_A Methylmalonic aciduria 95.5 0.0057 2E-07 63.3 2.9 23 507-529 76-98 (349)
391 1ixz_A ATP-dependent metallopr 95.5 0.0053 1.8E-07 60.3 2.5 23 508-530 52-74 (254)
392 2dhr_A FTSH; AAA+ protein, hex 95.4 0.0071 2.4E-07 65.5 3.6 28 86-115 59-86 (499)
393 1gtv_A TMK, thymidylate kinase 95.4 0.0038 1.3E-07 59.4 1.3 20 95-114 2-21 (214)
394 2wwf_A Thymidilate kinase, put 95.4 0.0074 2.5E-07 57.2 3.3 24 91-114 8-31 (212)
395 2p5t_B PEZT; postsegregational 95.4 0.0049 1.7E-07 60.7 2.1 25 90-114 29-53 (253)
396 1uf9_A TT1252 protein; P-loop, 95.4 0.0073 2.5E-07 56.8 3.2 22 93-114 8-29 (203)
397 2grj_A Dephospho-COA kinase; T 95.4 0.0067 2.3E-07 57.1 2.9 22 507-528 14-35 (192)
398 1ly1_A Polynucleotide kinase; 95.4 0.0078 2.7E-07 55.3 3.3 21 94-114 3-23 (181)
399 2ze6_A Isopentenyl transferase 95.4 0.0072 2.4E-07 59.5 3.1 21 94-114 2-22 (253)
400 2wjg_A FEOB, ferrous iron tran 95.4 0.008 2.7E-07 55.6 3.3 21 95-115 9-29 (188)
401 2v54_A DTMP kinase, thymidylat 95.4 0.0075 2.6E-07 56.8 3.1 23 507-529 6-28 (204)
402 2plr_A DTMP kinase, probable t 95.4 0.0078 2.7E-07 57.0 3.2 23 92-114 3-25 (213)
403 1ni3_A YCHF GTPase, YCHF GTP-b 95.4 0.005 1.7E-07 64.6 1.9 29 499-527 14-42 (392)
404 3fb4_A Adenylate kinase; psych 95.4 0.007 2.4E-07 57.7 2.9 21 507-527 2-22 (216)
405 1ega_A Protein (GTP-binding pr 95.3 0.0071 2.4E-07 61.2 3.0 22 507-528 10-31 (301)
406 2c95_A Adenylate kinase 1; tra 95.3 0.0076 2.6E-07 56.3 3.0 22 507-528 11-32 (196)
407 2bwj_A Adenylate kinase 5; pho 95.3 0.0075 2.6E-07 56.5 3.0 22 507-528 14-35 (199)
408 1nn5_A Similar to deoxythymidy 95.3 0.0084 2.9E-07 56.9 3.3 25 90-114 6-30 (215)
409 1xjc_A MOBB protein homolog; s 95.3 0.0076 2.6E-07 55.3 2.9 23 507-529 6-28 (169)
410 1via_A Shikimate kinase; struc 95.3 0.0081 2.8E-07 55.2 3.0 20 95-114 6-25 (175)
411 1gvn_B Zeta; postsegregational 95.3 0.0069 2.4E-07 60.9 2.7 24 91-114 31-54 (287)
412 1w1w_A Structural maintenance 95.3 0.014 4.9E-07 62.1 5.3 45 186-230 365-410 (430)
413 2rhm_A Putative kinase; P-loop 95.3 0.0081 2.8E-07 56.0 3.0 21 507-527 7-27 (193)
414 2zej_A Dardarin, leucine-rich 95.3 0.0085 2.9E-07 55.5 3.1 21 95-115 4-24 (184)
415 2z0h_A DTMP kinase, thymidylat 95.3 0.0081 2.8E-07 56.2 3.0 22 507-528 2-23 (197)
416 1ewq_A DNA mismatch repair pro 95.3 0.0072 2.5E-07 68.9 3.0 75 501-579 571-650 (765)
417 3dl0_A Adenylate kinase; phosp 95.3 0.0074 2.5E-07 57.6 2.6 23 507-529 2-24 (216)
418 1y63_A LMAJ004144AAA protein; 95.2 0.0081 2.8E-07 55.9 2.9 22 507-528 12-33 (184)
419 3auy_A DNA double-strand break 95.2 0.021 7.1E-07 59.6 6.3 46 185-230 314-359 (371)
420 1iy2_A ATP-dependent metallopr 95.2 0.0069 2.4E-07 60.4 2.5 23 508-530 76-98 (278)
421 2pt5_A Shikimate kinase, SK; a 95.2 0.0083 2.8E-07 54.6 2.8 21 507-527 2-22 (168)
422 1tev_A UMP-CMP kinase; ploop, 95.2 0.0098 3.3E-07 55.4 3.2 22 93-114 3-24 (196)
423 3ake_A Cytidylate kinase; CMP 95.2 0.0086 3E-07 56.5 2.9 22 507-528 4-25 (208)
424 1svm_A Large T antigen; AAA+ f 95.2 0.0081 2.8E-07 62.7 2.9 24 506-529 170-193 (377)
425 1nlf_A Regulatory protein REPA 95.2 0.0092 3.1E-07 59.6 3.1 28 500-527 25-52 (279)
426 3t5d_A Septin-7; GTP-binding p 95.2 0.0091 3.1E-07 59.5 3.1 21 507-527 10-30 (274)
427 2px0_A Flagellar biosynthesis 95.2 0.0059 2E-07 61.7 1.7 26 506-531 106-131 (296)
428 3lxw_A GTPase IMAP family memb 95.1 0.009 3.1E-07 58.6 3.0 22 507-528 23-44 (247)
429 2pbr_A DTMP kinase, thymidylat 95.1 0.009 3.1E-07 55.6 2.8 21 507-527 2-22 (195)
430 3q72_A GTP-binding protein RAD 95.1 0.01 3.5E-07 53.5 3.1 23 507-529 4-26 (166)
431 1e6c_A Shikimate kinase; phosp 95.1 0.0085 2.9E-07 54.8 2.6 21 507-527 4-24 (173)
432 2bwj_A Adenylate kinase 5; pho 95.1 0.0091 3.1E-07 55.9 2.8 24 91-114 10-33 (199)
433 3iij_A Coilin-interacting nucl 95.1 0.0091 3.1E-07 55.1 2.7 22 507-528 13-34 (180)
434 1nks_A Adenylate kinase; therm 95.1 0.01 3.5E-07 55.1 3.1 20 95-114 3-22 (194)
435 2yvu_A Probable adenylyl-sulfa 95.1 0.0096 3.3E-07 55.3 2.9 23 507-529 15-37 (186)
436 1uj2_A Uridine-cytidine kinase 95.1 0.0092 3.2E-07 58.6 2.9 22 507-528 24-45 (252)
437 1tev_A UMP-CMP kinase; ploop, 95.1 0.0097 3.3E-07 55.4 2.9 22 507-528 5-26 (196)
438 2iyv_A Shikimate kinase, SK; t 95.1 0.009 3.1E-07 55.3 2.6 21 507-527 4-24 (184)
439 1qf9_A UMP/CMP kinase, protein 95.1 0.01 3.5E-07 55.2 3.0 22 507-528 8-29 (194)
440 2vli_A Antibiotic resistance p 95.1 0.008 2.7E-07 55.5 2.2 24 91-114 3-26 (183)
441 1z2a_A RAS-related protein RAB 95.1 0.01 3.5E-07 53.5 2.9 21 507-527 7-27 (168)
442 1a7j_A Phosphoribulokinase; tr 95.1 0.0061 2.1E-07 61.4 1.5 21 507-527 7-27 (290)
443 2wwf_A Thymidilate kinase, put 95.0 0.01 3.5E-07 56.2 3.0 21 507-527 12-32 (212)
444 1ukz_A Uridylate kinase; trans 95.0 0.0098 3.4E-07 56.1 2.7 23 507-529 17-39 (203)
445 2p5t_B PEZT; postsegregational 95.0 0.0074 2.5E-07 59.4 1.8 23 507-529 34-56 (253)
446 1mky_A Probable GTP-binding pr 95.0 0.01 3.5E-07 63.5 3.0 23 507-529 182-204 (439)
447 2z0h_A DTMP kinase, thymidylat 95.0 0.012 4E-07 55.1 3.1 20 95-114 2-21 (197)
448 1kao_A RAP2A; GTP-binding prot 94.9 0.012 3.9E-07 52.9 2.9 21 507-527 5-25 (167)
449 3t34_A Dynamin-related protein 94.9 0.011 3.7E-07 61.4 3.0 30 86-118 30-59 (360)
450 2ce2_X GTPase HRAS; signaling 94.9 0.012 4.1E-07 52.6 3.0 21 507-527 5-25 (166)
451 2qtf_A Protein HFLX, GTP-bindi 94.9 0.011 3.8E-07 61.5 3.0 23 507-529 181-203 (364)
452 3k53_A Ferrous iron transport 94.9 0.012 4.1E-07 58.5 3.1 23 507-529 5-27 (271)
453 1aky_A Adenylate kinase; ATP:A 94.9 0.014 4.9E-07 55.8 3.6 24 91-114 2-25 (220)
454 2f6r_A COA synthase, bifunctio 94.9 0.012 4E-07 58.9 3.1 21 507-527 77-97 (281)
455 2nzj_A GTP-binding protein REM 94.9 0.012 4.3E-07 53.3 3.0 22 507-528 6-27 (175)
456 2ged_A SR-beta, signal recogni 94.9 0.012 4E-07 54.8 2.9 23 507-529 50-72 (193)
457 3lxx_A GTPase IMAP family memb 94.9 0.016 5.6E-07 56.2 4.0 24 95-118 31-54 (239)
458 2plr_A DTMP kinase, probable t 94.9 0.012 3.9E-07 55.8 2.9 23 507-529 6-28 (213)
459 1in4_A RUVB, holliday junction 94.9 0.01 3.4E-07 61.0 2.6 23 507-529 53-75 (334)
460 2erx_A GTP-binding protein DI- 94.9 0.013 4.4E-07 53.0 3.0 21 507-527 5-25 (172)
461 1xjc_A MOBB protein homolog; s 94.9 0.013 4.6E-07 53.7 3.1 39 94-136 5-43 (169)
462 3q85_A GTP-binding protein REM 94.9 0.013 4.5E-07 52.9 3.0 22 507-528 4-25 (169)
463 1g16_A RAS-related protein SEC 94.9 0.013 4.4E-07 52.9 3.0 21 507-527 5-25 (170)
464 1svi_A GTP-binding protein YSX 94.9 0.013 4.6E-07 54.4 3.2 22 507-528 25-46 (195)
465 1nn5_A Similar to deoxythymidy 94.8 0.013 4.3E-07 55.7 3.0 21 507-527 11-31 (215)
466 3llm_A ATP-dependent RNA helic 94.8 0.01 3.5E-07 57.5 2.4 25 89-113 72-96 (235)
467 2dyk_A GTP-binding protein; GT 94.8 0.013 4.4E-07 52.4 2.9 22 507-528 3-24 (161)
468 1c1y_A RAS-related protein RAP 94.8 0.013 4.4E-07 52.7 2.9 21 507-527 5-25 (167)
469 1zd8_A GTP:AMP phosphotransfer 94.8 0.015 5E-07 56.0 3.4 24 91-114 5-28 (227)
470 3k1j_A LON protease, ATP-depen 94.8 0.0051 1.7E-07 68.7 0.1 31 86-116 53-83 (604)
471 3d3q_A TRNA delta(2)-isopenten 94.8 0.012 4.1E-07 60.2 2.9 23 507-529 9-31 (340)
472 1u8z_A RAS-related protein RAL 94.8 0.013 4.5E-07 52.6 2.9 21 507-527 6-26 (168)
473 2cdn_A Adenylate kinase; phosp 94.8 0.017 5.8E-07 54.4 3.7 24 91-114 18-41 (201)
474 2dby_A GTP-binding protein; GD 94.8 0.0094 3.2E-07 62.0 2.0 22 507-528 3-24 (368)
475 1zd8_A GTP:AMP phosphotransfer 94.8 0.013 4.4E-07 56.5 2.9 22 507-528 9-30 (227)
476 2fn4_A P23, RAS-related protei 94.8 0.014 4.8E-07 53.3 3.0 22 507-528 11-32 (181)
477 1z0j_A RAB-22, RAS-related pro 94.8 0.014 4.7E-07 52.7 2.9 22 507-528 8-29 (170)
478 3pqc_A Probable GTP-binding pr 94.8 0.015 5.1E-07 53.9 3.2 22 507-528 25-46 (195)
479 1zuh_A Shikimate kinase; alpha 94.7 0.014 4.7E-07 53.2 2.8 21 507-527 9-29 (168)
480 1q3t_A Cytidylate kinase; nucl 94.7 0.014 4.6E-07 56.7 2.9 21 507-527 18-38 (236)
481 3m6a_A ATP-dependent protease 94.7 0.015 5.1E-07 63.9 3.6 24 92-115 107-130 (543)
482 1z08_A RAS-related protein RAB 94.7 0.014 4.8E-07 52.7 2.8 21 507-527 8-28 (170)
483 2cdn_A Adenylate kinase; phosp 94.7 0.014 4.7E-07 55.0 2.9 22 507-528 22-43 (201)
484 2ga8_A Hypothetical 39.9 kDa p 94.7 0.012 4.2E-07 60.4 2.7 25 90-114 19-45 (359)
485 1ek0_A Protein (GTP-binding pr 94.7 0.014 5E-07 52.5 2.9 21 507-527 5-25 (170)
486 1ky3_A GTP-binding protein YPT 94.7 0.014 4.9E-07 53.2 2.9 21 507-527 10-30 (182)
487 1gvn_B Zeta; postsegregational 94.7 0.013 4.4E-07 58.9 2.7 21 507-527 35-55 (287)
488 3fb4_A Adenylate kinase; psych 94.7 0.015 5.2E-07 55.3 3.1 20 95-114 2-21 (216)
489 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.015 5E-07 53.0 2.9 21 507-527 9-29 (177)
490 3t1o_A Gliding protein MGLA; G 94.6 0.018 6.3E-07 53.3 3.5 25 507-531 16-40 (198)
491 1r2q_A RAS-related protein RAB 94.6 0.015 5.2E-07 52.3 2.9 21 507-527 8-28 (170)
492 1zak_A Adenylate kinase; ATP:A 94.6 0.015 5E-07 55.8 2.9 23 92-114 4-26 (222)
493 1fzq_A ADP-ribosylation factor 94.6 0.016 5.6E-07 53.4 3.1 22 507-528 18-39 (181)
494 1f6b_A SAR1; gtpases, N-termin 94.6 0.016 5.3E-07 54.5 3.0 21 507-527 27-47 (198)
495 1udx_A The GTP-binding protein 94.6 0.011 3.8E-07 62.5 2.1 23 506-528 158-180 (416)
496 3tw8_B RAS-related protein RAB 94.6 0.016 5.4E-07 52.9 2.9 21 507-527 11-31 (181)
497 2cxx_A Probable GTP-binding pr 94.6 0.017 5.9E-07 53.2 3.2 22 507-528 3-24 (190)
498 1zuh_A Shikimate kinase; alpha 94.6 0.019 6.5E-07 52.3 3.4 22 93-114 7-28 (168)
499 4eaq_A DTMP kinase, thymidylat 94.6 0.012 4.3E-07 56.9 2.2 25 506-530 27-51 (229)
500 1zak_A Adenylate kinase; ATP:A 94.6 0.015 5.1E-07 55.7 2.8 22 507-528 7-28 (222)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8e-91 Score=842.03 Aligned_cols=623 Identities=32% Similarity=0.468 Sum_probs=456.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+.+++..++.++..++.++.++|.+.|
T Consensus 243 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1321)
T 4f4c_A 243 LAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGIS 322 (1321)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999943
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.+.+++|. +.+.+..++++.+|++|+++++|.+|+++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 402 (1321)
T 4f4c_A 323 FGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSS 402 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 23344443 3456778999999999999999987653210
Q ss_pred C-------------------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------
Q 047286 83 D-------------------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP---------- 121 (632)
Q Consensus 83 ~-------------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~---------- 121 (632)
. +++||+|++|+++|||||||||||||+++|. ++|+|
T Consensus 403 ~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~--~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 403 SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGV 480 (1321)
T ss_dssp SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT--TSSCCSEEEEEETTE
T ss_pred ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc--cccccccCcccCCCc
Confidence 0 0199999999999999999999999999998 55544
Q ss_pred -------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------
Q 047286 122 -------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 122 -------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------- 184 (632)
..+|++|+||+|+|++|++|+++ ||.+|.++.+++++.++++.+++++++..||+|++|.|
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e--NI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEE--NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHH--HHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhH--HHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 34788999999999999999999 79999988999999999999999999999999999988
Q ss_pred ----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhH
Q 047286 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 185 ----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~e 242 (632)
+||+||+++++.++++|.++.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence 2999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHhhhhhhhcccc---ccccc------c-cCCCCC----CC---cccc---cc----cccccccC-
Q 047286 243 LIEDPEGAYSQLVRLQEGAKEAQDKSL---GVKHI------L-RGFPGP----IG---VYET---AE----RSEDRIEK- 297 (632)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~-~~~~~~----~~---~~~~---~~----~~~~~~~~- 297 (632)
|++. ++.|.++++.|......+.... ..... . ...... .. .... .. ...+..+.
T Consensus 639 L~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1321)
T 4f4c_A 639 LMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEER 717 (1321)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CC
T ss_pred HHHh-hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhh
Confidence 9987 7899999887754322111000 00000 0 000000 00 0000 00 00000000
Q ss_pred ---Cch---hH----hhhhhHHHHHHHhhccchhHHHHHHHHHHHH---HHHHHHHHhh---------------------
Q 047286 298 ---DPT---EI----EKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLS--------------------- 343 (632)
Q Consensus 298 ---~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~p~~~~~~~--------------------- 343 (632)
+.. .. .......+++++++.+++++.++++++++.+ ++|.+.+++.
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1321)
T 4f4c_A 718 IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWA 797 (1321)
T ss_dssp CCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHH
T ss_pred ccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 000 00 0111224566667777777766665554432 1111110000
Q ss_pred --------------------------------------h------------hcchhhHHHHHhhhHHHHHHHHHHHHHHH
Q 047286 344 --------------------------------------T------------SINIGAVGARLSTDASAVRSVVGDALGLI 373 (632)
Q Consensus 344 --------------------------------------~------------~~~~G~l~srls~D~~~i~~~~~~~~~~~ 373 (632)
. -.+.|++++|+++|++.++..++..+..+
T Consensus 798 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 877 (1321)
T 4f4c_A 798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTV 877 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 0 01249999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH---------------------------------------
Q 047286 374 IQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK--------------------------------------- 413 (632)
Q Consensus 374 ~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~--------------------------------------- 413 (632)
+..++.++++++++++. |.+++++++++|+++...++..+
T Consensus 878 ~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 957 (1321)
T 4f4c_A 878 ITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF 957 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHH
T ss_pred HHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHH
Confidence 99999999999888888 99999999888887665543211
Q ss_pred -HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcCHHHHHHH--HHHHH--HHHHHHHHhH
Q 047286 414 -KNYERL---------------------------HINAFCFFIGSKLVEHGDATFGEVFKF--LSEFG--CFWCLESTAV 461 (632)
Q Consensus 414 -~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~~~~~~~--~~~~~--~~~~~~~~~~ 461 (632)
+.+.+. ...++++|+|..++..+..+++.+..+ +.... ...+......
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1037 (1321)
T 4f4c_A 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 122345678888888887776544333 22111 1123344556
Q ss_pred HhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-------------------------EEEEEecCCC
Q 047286 462 APNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGN 516 (632)
Q Consensus 462 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~-------------------------~vaIVG~SGs 516 (632)
.+++..+..+++|++++++.+++.+..... ....+..|+|+|+| +|||||||||
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGs 1116 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGC 1116 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCC
Confidence 678888999999999999988776533221 22234456777776 7999999999
Q ss_pred ChHHHHHhhhcCCChhh-----------------------------------------------------hcHHHHHHHH
Q 047286 517 GKSTVISLAERFHNPEQ-----------------------------------------------------VIYSWIIIKC 543 (632)
Q Consensus 517 GKSTL~~ll~r~y~~~~-----------------------------------------------------~~~~~~~~~~ 543 (632)
|||||+++|+|||+|++ ++.+....++
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999843 2223334478
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------hccccch
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPP 588 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl 588 (632)
+|||.+||+||||.|||+|.+||||||||||||||+++ |+|||||
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 89999999999999999999999999999999999877 8999999
Q ss_pred hhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 589 YHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 589 ~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+|+++||+|+|||+|+|+|+|||+||+++ +|.|++||+.|..
T Consensus 1277 sTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1277 NTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp STTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 99999999999999999999999999997 9999999999864
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.6e-78 Score=729.81 Aligned_cols=624 Identities=34% Similarity=0.513 Sum_probs=446.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+.+++..++.+++.+++++.++|++.|
T Consensus 215 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1284)
T 3g5u_A 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANIS 294 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999954
Q ss_pred ------------------------CCcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDM-----------------PLGQTSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~-----------------~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+ +++++.+.+..++++.+|++|++++++.++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 374 (1284)
T 3g5u_A 295 MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcc
Confidence 1112 2233345567889999999999999987664321
Q ss_pred ----------------------CC--------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------
Q 047286 82 ----------------------YD--------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP---------- 121 (632)
Q Consensus 82 ----------------------~~--------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~---------- 121 (632)
+. +++||+|++||+++|+||||||||||+++|.| +++|
T Consensus 375 ~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g--~~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 375 SKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR--LYDPLDGMVSIDGQ 452 (1284)
T ss_dssp CSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT--SSCCSEEEEEETTE
T ss_pred cccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCE
Confidence 00 01999999999999999999999999999984 4433
Q ss_pred -------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------
Q 047286 122 -------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 122 -------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------- 184 (632)
..+|+++|||+|+|++|.+++.+ |+.++.++.+++++.++++.+++++++..+|.|++|.+
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e--Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFATTIAE--NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSSCHHH--HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCccHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 34678899999999999998887 79988877889999999999999999999999988766
Q ss_pred ----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhH
Q 047286 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 185 ----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~e 242 (632)
+||+||+++++.+++.+++..+++|+|+|||+++.+..||+|++|++|+|+++|+|+|
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 3999999999999999998888999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHhhhhhhhccccc--cccccc--CCC---CCCC----cccccccccccc-cCCchh----Hhhhh
Q 047286 243 LIEDPEGAYSQLVRLQEGAKEAQDKSLG--VKHILR--GFP---GPIG----VYETAERSEDRI-EKDPTE----IEKRK 306 (632)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~---~~~~----~~~~~~~~~~~~-~~~~~~----~~~~~ 306 (632)
+++. ++.|.+++..+....+....... ...... ... .... .........+.. ..+... .+...
T Consensus 611 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1284)
T 3g5u_A 611 LMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVP 689 (1284)
T ss_dssp HHHT-TSHHHHHHHHTC---------------------------------------------------------CCCCCS
T ss_pred HHhC-CCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhcccc
Confidence 9987 67788777654322111000000 000000 000 0000 000000000000 000000 00000
Q ss_pred hHHHHHHHhhccchhHHHHHHHHHHHH---HHHHHH--------------------------------------------
Q 047286 307 KVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFG-------------------------------------------- 339 (632)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~p~~~-------------------------------------------- 339 (632)
...+++++.+.+++|+.++++++++++ +.|.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 690 PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333333333222222221111 000000
Q ss_pred -HHh----------------hh------------hcchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047286 340 -LLL----------------ST------------SINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA 390 (632)
Q Consensus 340 -~~~----------------~~------------~~~~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 390 (632)
+++ .. ....|++++|+++|++.++..++..+..++..++.+++++++++..
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 1235999999999999999999999999999999998888888877
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhHH----------------------------------------HHHH-----------
Q 047286 391 -WKLAFITLAVPSLTIAEGYLKKKK----------------------------------------NYER----------- 418 (632)
Q Consensus 391 -~~l~lv~l~~~~l~~~~~~~~~~~----------------------------------------~~~~----------- 418 (632)
|++++++++++|+++...++..+. .+.+
T Consensus 850 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888876654332110 0000
Q ss_pred ----------------HHHHHHHHhhhhHHhhcCCcCHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHc
Q 047286 419 ----------------LHINAFCFFIGSKLVEHGDATFGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILE 480 (632)
Q Consensus 419 ----------------~~~~~~~~~~g~~~v~~g~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 480 (632)
....+.++|+|+.++..|.++++.++.++... ....+.......+.+.++..+++|++++++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 01234567889999999999999888776332 223355556666677888999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccEEEe-------------------------eEEEEEecCCCChHHHHHhhhcCCChhh--
Q 047286 481 SKPKIDWSSKDGMTPSTVRGDIVFE-------------------------HTVALVGENGNGKSTVISLAERFHNPEQ-- 533 (632)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~g~I~f~-------------------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~-- 533 (632)
.+|+.+........+....|.|+|+ +++|||||||||||||+++|+|+|+|++
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp SCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 8776543211111112223444443 3899999999999999999999999843
Q ss_pred ---------------------------------------------------hcHHHHHHHHHHHHhcCCCccCcccccCC
Q 047286 534 ---------------------------------------------------VIYSWIIIKCTNFIASLPQGSDLNVGERG 562 (632)
Q Consensus 534 ---------------------------------------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G 562 (632)
++.+....++++|+.++|+||||.|||+|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 01111123678999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeEee
Q 047286 563 LQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVIAE 607 (632)
Q Consensus 563 ~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~ive 607 (632)
.+||||||||+|||||+++ ++||||++++++||+|+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999766 78999999999999999999999999
Q ss_pred ecChHHHhccCCchhHHHHHhhhc
Q 047286 608 KGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 608 ~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+|+|+||+++ +|.|++|++.|..
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHHC-
T ss_pred ECCHHHHHhC-CCHHHHHHHHHhh
Confidence 9999999997 9999999998853
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.7e-49 Score=475.23 Aligned_cols=281 Identities=35% Similarity=0.545 Sum_probs=232.0
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH--------------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK-------------- 413 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~-------------- 413 (632)
|++++|+++|++.+++.+...+..++..++.++++++++++. |++++++++++|+++...++..+
T Consensus 193 G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1321)
T 4f4c_A 193 GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYA 272 (1321)
T ss_dssp TTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999888877654422111
Q ss_pred --------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 414 --------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 414 --------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
+.+.+. ...++++|+|+.++..|.+++
T Consensus 273 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 352 (1321)
T 4f4c_A 273 KAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNF 352 (1321)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 000000 123456889999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|.+++++... ...++.........+..+..+++|++++++.+|+.+.+......+.+.+|+|+|+|
T Consensus 353 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~ 432 (1321)
T 4f4c_A 353 GDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVP 432 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCc
Confidence 9999887433 33456667777788899999999999999998876544333333344567777776
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
++|||||||||||||+++|.|+|+|++
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI 512 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHH
Confidence 799999999999999999999999843
Q ss_pred -----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 534 -----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 534 -----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
++.+....++++||..||+||||.|||+|.+||||||||||||||+++
T Consensus 513 ~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~ 592 (1321)
T 4f4c_A 513 SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592 (1321)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHH
T ss_pred hhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHH
Confidence 111222336789999999999999999999999999999999999766
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|.
T Consensus 593 i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp HHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 899999999999999999999999999999999997 999999998874
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-42 Score=389.76 Aligned_cols=282 Identities=25% Similarity=0.349 Sum_probs=218.9
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------ 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------ 414 (632)
.|++++|+++|++.+++.+...+..++..++.+++++++++.. |+++++.+++.|+++...++..+ +
T Consensus 119 ~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (587)
T 3qf4_A 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQEST 198 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999888888888888888888877 99988888777766543321111 0
Q ss_pred ----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 415 ----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 415 ----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
.+.+. ...+.++|+|+.++..|.++
T Consensus 199 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt 278 (587)
T 3qf4_A 199 DEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQME 278 (587)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 00000 12234678899999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++.... ..++.........+.++..+.+|+.++++.+++.+.+.. ....++..|.|+|+|
T Consensus 279 ~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~ 357 (587)
T 3qf4_A 279 IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFRYFENTDP 357 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT-CBCCSCCCCCEEEEEEEECSSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-ccccCCCCCcEEEEEEEEEcCCCCCc
Confidence 999998874332 334555666677888899999999999988765432211 111112234444443
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc--------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI-------------------------- 535 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~-------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence 799999999999999999999999843 00
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+....++++++..+|+|+||.++|+|.+||||||||+|||||+++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~ 517 (587)
T 3qf4_A 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKR 517 (587)
T ss_dssp TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 0111225679999999999999999999999999999999999765
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.+
T Consensus 518 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 518 ILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHhc
Confidence 789999999999999999999999999999999997 9999999998753
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-42 Score=387.13 Aligned_cols=280 Identities=28% Similarity=0.378 Sum_probs=220.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH----------H---
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK----------K--- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~----------~--- 414 (632)
|++++|+++|++.+++.+...+..++..++.+++++++++.. |.++++.+++.|+++...+...+ +
T Consensus 134 G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (598)
T 3qf4_B 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888877 99998888777766543321111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 214 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~ 293 (598)
T 3qf4_B 214 QLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITV 293 (598)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCH
T ss_pred HHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122356778999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|.+++++... ...++..+......+..+..+.+|+.++++.+++.+.+. ....++..|+|+|+|
T Consensus 294 g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~l 371 (598)
T 3qf4_B 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD--AVELREVRGEIEFKNVWFSYDKKKPVL 371 (598)
T ss_dssp HHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS--CCCCCSCCCCEEEEEEECCSSSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCccc
Confidence 9999887332 223456667777788899999999999998877643211 111122334555544
Q ss_pred -----------EEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH------------------------
Q 047286 507 -----------TVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI------------------------ 539 (632)
Q Consensus 507 -----------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~------------------------ 539 (632)
++|||||||||||||+++|.|+|+|++ +....+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 451 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence 799999999999999999999999853 111000
Q ss_pred ---------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 540 ---------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 540 ---------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..++++++..+|+||||.+||+|.+||||||||+|||||+++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~ 531 (598)
T 3qf4_B 452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531 (598)
T ss_dssp SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 114578999999999999999999999999999999999765
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.+
T Consensus 532 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 789999999999999999999999999999999997 9999999988753
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-41 Score=381.94 Aligned_cols=281 Identities=28% Similarity=0.352 Sum_probs=217.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------------- 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------------- 413 (632)
.|++++|+++|++.+++.+...+..++..++.+++++++++.. |.++++.+++.|+++...+...+
T Consensus 117 ~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 196 (578)
T 4a82_A 117 VGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQAL 196 (578)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999888888888888888888888777 99988887777766543321111
Q ss_pred ---------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 414 ---------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ---------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+.+.+. ...++++++|++++..|.++
T Consensus 197 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt 276 (578)
T 4a82_A 197 AEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT 276 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 000000 12245678899999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++... ...++.........+.++..+.+|++++++.+++.+.+.. ....+...|.|+++|
T Consensus 277 ~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~ 355 (578)
T 4a82_A 277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDNEAP 355 (578)
T ss_dssp HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-ccccCCCCCeEEEEEEEEEcCCCCCc
Confidence 99999887433 2335666777778889999999999999988776432211 111111233444433
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc--------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI-------------------------- 535 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~-------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 799999999999999999999999843 00
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+....++++++..+|+|+||.+||+|.+||||||||+|||||+++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~ 515 (578)
T 4a82_A 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515 (578)
T ss_dssp GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 0111225679999999999999999999999999999999999665
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.
T Consensus 516 i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp HHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTTTT
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhhc
Confidence 789999999999999999999999999999999997 999999998874
No 7
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.1e-41 Score=407.77 Aligned_cols=282 Identities=34% Similarity=0.549 Sum_probs=225.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------------- 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------------- 413 (632)
.|++++|+++|++.+++.++..+..++..++.+++++++++.. |+++++++++.|+++...++..+
T Consensus 164 ~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1284)
T 3g5u_A 164 VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAY 243 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999888887 99999998888887654422211
Q ss_pred ---------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 414 ---------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ---------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+.+.+. ...++++|+|+.++..|.++
T Consensus 244 ~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~ 323 (1284)
T 3g5u_A 244 AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYS 323 (1284)
T ss_dssp HHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 000000 12345788999999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLS--EFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++. .....++.........++.+..+++|++++++.+|+.+........++..+|+|+|+|
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~ 403 (1284)
T 3g5u_A 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCC
Confidence 999887653 2333445666677778889999999999999987765432222222233455566554
Q ss_pred --------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc-------------------------
Q 047286 507 --------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI------------------------- 535 (632)
Q Consensus 507 --------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 799999999999999999999999843 00
Q ss_pred --------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------
Q 047286 536 --------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------- 581 (632)
Q Consensus 536 --------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------- 581 (632)
.+....++++|+.++|+||||.+||+|.+||||||||||||||+++
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 0111225679999999999999999999999999999999999765
Q ss_pred ---------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ---------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ---------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
++||||++++++||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 564 ~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp HHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 789999999999999999999999999999999997 999999997764
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4e-40 Score=369.76 Aligned_cols=282 Identities=27% Similarity=0.363 Sum_probs=217.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhH-----H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYL-KKK-----K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~-~~~-----~------- 414 (632)
|++++|+++|++.++..+...+..++..++.+++++++++.. |.++++++++.|+++...+. .++ +
T Consensus 122 g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
T 3b5x_A 122 GGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888888887766 99998888777776543321 111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 202 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~ 281 (582)
T 3b5x_A 202 HVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTP 281 (582)
T ss_pred HHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122346778999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------C---------------CCCc
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------M---------------TPST 497 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~---------------~~~~ 497 (632)
|.+++++... ...++..+......++.+..+.+|+.++++.+++.+...... . ...+
T Consensus 282 g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~ 361 (582)
T 3b5x_A 282 GTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH 361 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcccccc
Confidence 9999887433 334566777778888999999999999998766532110000 0 0001
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH-----------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY----------------------------- 536 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~----------------------------- 536 (632)
++-+|+-++++|||||||||||||+++|.|+|+|++ ...
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccC
Confidence 111233344899999999999999999999998843 000
Q ss_pred -----------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 537 -----------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 537 -----------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
.....++++++..+|+||||.+||+|.+||||||||+|||||+++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 000125678999999999999999999999999999999999665
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|++|++|+|+|+|+|+||+++ +|.|+++++.|..
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 522 ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQFG 581 (582)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHhhc
Confidence 788999999999999999999999999999999997 8999999998853
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.3e-40 Score=367.60 Aligned_cols=279 Identities=27% Similarity=0.391 Sum_probs=215.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhH-----H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYL-KKK-----K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~-~~~-----~------- 414 (632)
|++++|+++|++.++..+...+..++..++.+++++++++.. |.++++.+++.|+++..... .++ +
T Consensus 122 g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
T 3b60_A 122 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMG 201 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888777 99888887777765543321 111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 202 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 281 (582)
T 3b60_A 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTA 281 (582)
T ss_dssp HHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHH
T ss_pred HHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122346778889999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccE----------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDI---------------- 502 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I---------------- 502 (632)
|.+++++... ...++..+......+..+..+.+|+.++++.+++.+.... ..++..+.|
T Consensus 282 g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~ 358 (582)
T 3b60_A 282 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKR---VIDRATGDLEFRNVTFTYPGREVPA 358 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCB---CCSCCCCCEEEEEEEECSSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC---CCCCCCCcEEEEEEEEEcCCCCCcc
Confidence 9999887433 3345667777778889999999999999987765321100 000011112
Q ss_pred --------EEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHH-------------------------
Q 047286 503 --------VFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYS------------------------- 537 (632)
Q Consensus 503 --------~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~------------------------- 537 (632)
+-++++|||||||||||||+++|.|+|+|++ ....
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 2234899999999999999999999998843 0000
Q ss_pred ---------------HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 538 ---------------WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 538 ---------------~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
....++++++.++|+||||.+||+|.+||||||||+|||||+++
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~ 518 (582)
T 3b60_A 439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518 (582)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHH
Confidence 00115678999999999999999999999999999999999765
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|++|++|+|+|.|+|+||++. +|.|+++++.|..
T Consensus 519 i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b60_A 519 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHHTCC
T ss_pred HHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhcc
Confidence 789999999999999999999999999999999997 9999999998853
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-39 Score=365.13 Aligned_cols=282 Identities=28% Similarity=0.362 Sum_probs=202.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------ 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------ 414 (632)
.|++++|+++|++.++..+...+..++..++.+++++++++.. |.++++++++.|+++...+...+ +
T Consensus 118 ~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 197 (595)
T 2yl4_A 118 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSL 197 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999888888888888877 99998887777765543321111 0
Q ss_pred ----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 415 ----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 415 ----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
.+.+. ...+.++|+|++++..|.++
T Consensus 198 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt 277 (595)
T 2yl4_A 198 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMT 277 (595)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00000 11234577899999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccc-EEEe-----------
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGD-IVFE----------- 505 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~-I~f~----------- 505 (632)
+|.+++++... ...++..+......+.++..+.+|++++++.+++.+.+.. ...+++..++ |+++
T Consensus 278 ~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~ 356 (595)
T 2yl4_A 278 VGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG-VILNEKSFQGALEFKNVHFAYPARPE 356 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS-BCCCTTTCCCCEEEEEEEEECSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-CCCCcCCCCCeEEEEEEEEEeCCCCC
Confidence 99998887432 3345667777778888999999999999987765322110 0000111122 2222
Q ss_pred --------------eEEEEEecCCCChHHHHHhhhcCCChhh------------hcH-----------------------
Q 047286 506 --------------HTVALVGENGNGKSTVISLAERFHNPEQ------------VIY----------------------- 536 (632)
Q Consensus 506 --------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~----------------------- 536 (632)
+++|||||||||||||+++|.|+|+|++ +..
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 3799999999999999999999998842 000
Q ss_pred -------------HH------HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 537 -------------SW------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 537 -------------~~------~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
.. ...++++++.++|+|+||.+||+|.+||||||||+|||||+++
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 00 0125678999999999999999999999999999999999765
Q ss_pred -------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 -------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 -------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||+++++.||+|+||++|+|+|.|+|+||++++++.|+++++.|.
T Consensus 517 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 517 ENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C----------
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhh
Confidence 7889999999999999999999999999999999844899999998774
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-34 Score=322.28 Aligned_cols=254 Identities=26% Similarity=0.353 Sum_probs=213.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.++..+..++.++..++.++.+.|.+.|
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (587)
T 3qf4_A 170 IFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888999999999999999999999999999954
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.+|++|++++++.+++...
T Consensus 250 ~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 329 (587)
T 3qf4_A 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA 329 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 233455543 23456788999999999999987654211
Q ss_pred ---------------------C--C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------
Q 047286 82 ---------------------Y--D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------- 119 (632)
Q Consensus 82 ---------------------~--~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------- 119 (632)
+ . +++||++++||+++|+||||||||||+++|.|+...
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 330 DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 0 0 019999999999999999999999999999844211
Q ss_pred -CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 120 -APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 120 -~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
++..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.+++++++..+|.|+++.+
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKE--NLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHH--HHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred CCHHHHHhheEEECCCCcCcCccHHH--HHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHH
Confidence 1234688999999999999888877 79888877888999999999999999999998888766
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++++.+++.++++.+++|+|+|||+++.+..||+|++|++|+|+++|+|+|+.+.
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 39999999999999999998889999999999999999999999999999999999999876
Q ss_pred CCcHHHHHHHHH
Q 047286 247 PEGAYSQLVRLQ 258 (632)
Q Consensus 247 ~~~~~~~~~~~~ 258 (632)
++.|.+++..+
T Consensus 568 -~~~~~~~~~~~ 578 (587)
T 3qf4_A 568 -CKPYREIYESQ 578 (587)
T ss_dssp -CHHHHHHHHHH
T ss_pred -CcHHHHHHHHH
Confidence 57788877654
No 12
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-34 Score=320.49 Aligned_cols=254 Identities=34% Similarity=0.472 Sum_probs=213.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 168 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (578)
T 4a82_A 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (578)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999999999943
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|. +...+..++++.+|++|++++++.+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 327 (578)
T 4a82_A 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG 327 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 22344443 334567889999999999999987654211
Q ss_pred ---------------------CC-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------
Q 047286 82 ---------------------YD-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------- 119 (632)
Q Consensus 82 ---------------------~~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------- 119 (632)
+. +++||++++||+++|+||||||||||+++|.|+...
T Consensus 328 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 328 VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 00 019999999999999999999999999999854211
Q ss_pred -CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 120 -APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 120 -~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
++..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.+++++++..+|.|++|.+
T Consensus 408 ~~~~~~r~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 408 FLTGSLRNQIGLVQQDNILFSDTVKE--NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp SCHHHHHHTEEEECSSCCCCSSBHHH--HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred CCHHHHhhheEEEeCCCccCcccHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 2234678899999999999988877 79888777788999999999999999999988887766
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++++.+.+.++++.+++|+|+|||+++.++.||+|++|++|+++++|+|+|+.+.
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 39999999999999999998888999999999999989999999999999999999999876
Q ss_pred CCcHHHHHHHHH
Q 047286 247 PEGAYSQLVRLQ 258 (632)
Q Consensus 247 ~~~~~~~~~~~~ 258 (632)
++.|.++++.|
T Consensus 566 -~~~~~~~~~~q 576 (578)
T 4a82_A 566 -QGAYEHLYSIQ 576 (578)
T ss_dssp -TSHHHHHHTTT
T ss_pred -CcHHHHHHHhh
Confidence 57788777543
No 13
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-34 Score=319.59 Aligned_cols=255 Identities=33% Similarity=0.503 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 184 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (598)
T 3qf4_B 184 LSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVL 263 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888889999999999999999999999999999944
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|. +...+..++++.+|++|++++++.+++.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 343 (598)
T 3qf4_B 264 PPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP 343 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22334443 344577889999999999999987654210
Q ss_pred --------------------C--C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CC
Q 047286 82 --------------------Y--D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YA 120 (632)
Q Consensus 82 --------------------~--~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~ 120 (632)
+ . +++||++++||+++|+||||||||||+++|.|+.. .+
T Consensus 344 ~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~ 423 (598)
T 3qf4_B 344 DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK 423 (598)
T ss_dssp SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC
T ss_pred CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC
Confidence 0 0 12999999999999999999999999999985421 12
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
+..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.++++++++.+|.|+++.+
T Consensus 424 ~~~~r~~i~~v~Q~~~lf~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 424 RSSLRSSIGIVLQDTILFSTTVKE--NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HHHHHHHEEEECTTCCCCSSBHHH--HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred HHHHHhceEEEeCCCccccccHHH--HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 234678999999999999888877 78888776778889999999999999999888887765
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+|++||+++++.+.+.++++.+++|+|+|||+++.++.||+|++|++|+++++|+|+|+.+. +
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~ 580 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-R 580 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-T
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-C
Confidence 39999999999999999999889999999999999999999999999999999999999876 6
Q ss_pred cHHHHHHHHHh
Q 047286 249 GAYSQLVRLQE 259 (632)
Q Consensus 249 ~~~~~~~~~~~ 259 (632)
+.|.+++..+.
T Consensus 581 ~~~~~~~~~~~ 591 (598)
T 3qf4_B 581 GFYYELFTSQY 591 (598)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 78888876653
No 14
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4e-34 Score=326.33 Aligned_cols=163 Identities=20% Similarity=0.282 Sum_probs=105.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHH---------------------HHHHhCCCCC------------------cHHhh
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVI---------------------NLVESFRFYA------------------PEAEQ 125 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl---------------------~ll~~~~~~~------------------~~~~r 125 (632)
.+||+|++||+++|+||||||||||+ +++.++...+ ....+
T Consensus 36 ~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~ 115 (670)
T 3ux8_A 36 NIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPR 115 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----C
T ss_pred ccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccch
Confidence 49999999999999999999999997 4444322111 00123
Q ss_pred cceEEEcccCcccc------------------cccccccccccCCC----CCCH-------H---HHHHHHHHccc----
Q 047286 126 EKIGLVSKEPIFLF------------------CDFNEGQYIPYGKQ----NASD-------E---HIRPAVQLANA---- 169 (632)
Q Consensus 126 ~~i~~v~Q~~~~~~------------------~~~~~~~~i~~~~~----~~~~-------~---~~~~~~~~~~l---- 169 (632)
..+++++|.+.++. ..++..+|+.+... .... + +..+.++..++
T Consensus 116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 195 (670)
T 3ux8_A 116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT 195 (670)
T ss_dssp CBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCC
T ss_pred hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 45666666543210 11122224443210 0000 0 01123455554
Q ss_pred -hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEE
Q 047286 170 -EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIM 228 (632)
Q Consensus 170 -~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~v 228 (632)
+..+.+||+|+++++ +|++||+.+++.+++.|++++ ++.|+|+|||+++.+..||+|++
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~ 275 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 275 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence 355788999998777 399999999999999999985 47899999999998888999999
Q ss_pred E------eCCeEEEecChhHHhcCC
Q 047286 229 V------SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 229 l------~~G~i~~~g~~~el~~~~ 247 (632)
| ++|++++.|+++++...+
T Consensus 276 l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 276 IGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp ECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred ecccccccCCEEEEecCHHHHhcCc
Confidence 9 899999999999987654
No 15
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.2e-33 Score=311.96 Aligned_cols=254 Identities=33% Similarity=0.474 Sum_probs=210.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3b5x_A 172 IVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIA 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888889999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.++++|++++++.+++.+.
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b5x_A 252 DPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC
Confidence 234455543 34567889999999999999986543210
Q ss_pred -------------------CC-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 82 -------------------YD-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 82 -------------------~~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
+. +++||++++||+++|+||||||||||+++|.|+..+ +
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 332 KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411 (582)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC
Confidence 00 128999999999999999999999999999854211 1
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
+..+|++++||+|+|.+|..++.+ |+.++. +..++++++++++.++++++++++|+|++|.+
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLFNDTIAN--NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred HHHHhcCeEEEcCCCccccccHHH--HHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 234678899999999999887777 788876 45678889999999999999998888887765
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+|++||+.+++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+++|+.+.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ- 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-
Confidence 39999999999999999998779999999999999989999999999999999999999876
Q ss_pred CcHHHHHHHHH
Q 047286 248 EGAYSQLVRLQ 258 (632)
Q Consensus 248 ~~~~~~~~~~~ 258 (632)
.+.|.++++.|
T Consensus 569 ~~~~~~~~~~q 579 (582)
T 3b5x_A 569 DGAYAQLHRIQ 579 (582)
T ss_pred CcHHHHHHHHh
Confidence 67788887654
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.1e-33 Score=311.40 Aligned_cols=254 Identities=32% Similarity=0.468 Sum_probs=210.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3b60_A 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 251 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888889999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.++++|++++++.+++.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b60_A 252 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG 331 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 234455543 34567889999999999999986543210
Q ss_pred -------------------CC---C----cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 82 -------------------YD---N----RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 82 -------------------~~---~----~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
+. . ++||++++||+++|+||||||||||+++|.|+... +
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 332 KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411 (582)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC
Confidence 01 1 28999999999999999999999999999854211 1
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
+..+|++++||+|+|.+|..++.+ |+.++. +..++++++++++.++++++++++|+|+++.+
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLFNDTVAN--NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHH--HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HHHHHhhCeEEccCCcCCCCCHHH--HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 234678899999999999887777 788876 45678899999999999999999988888766
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+|++||+++++.+.+.++++.+++|+|++||+++.++.||+|++|++|++++.|+++|+.+.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ- 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-
Confidence 39999999999999999998889999999999999988999999999999999999999875
Q ss_pred CcHHHHHHHHH
Q 047286 248 EGAYSQLVRLQ 258 (632)
Q Consensus 248 ~~~~~~~~~~~ 258 (632)
++.|.++++.|
T Consensus 569 ~~~~~~~~~~q 579 (582)
T 3b60_A 569 HGVYAQLHKMQ 579 (582)
T ss_dssp TSSHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 56788777654
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-34 Score=295.68 Aligned_cols=169 Identities=33% Similarity=0.457 Sum_probs=131.3
Q ss_pred HHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------------------EEEEEecCCCC
Q 047286 461 VAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH-----------------------TVALVGENGNG 517 (632)
Q Consensus 461 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~-----------------------~vaIVG~SGsG 517 (632)
.+++++++..+++|++++++.+++...... ........|.|+|++ ++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 345666777889999999877654332111 111111223444443 79999999999
Q ss_pred hHHHHHhhhcCCChhh---------------------------------------------------hcHHHHHHHHHHH
Q 047286 518 KSTVISLAERFHNPEQ---------------------------------------------------VIYSWIIIKCTNF 546 (632)
Q Consensus 518 KSTL~~ll~r~y~~~~---------------------------------------------------~~~~~~~~~~~~~ 546 (632)
||||+++|.|+|+|++ ++......+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 9999999999999843 0011112356789
Q ss_pred HhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhh
Q 047286 547 IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHY 591 (632)
Q Consensus 547 i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~ 591 (632)
+..+|+||+|.+|++|.+||||||||+|||||+++ |+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999999999999999999999999999999765 7899999999
Q ss_pred hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 592 ~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+.||+|+||++|+|+|.|+|+||++. +|.|++||+.|..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999997 9999999988753
No 18
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1e-32 Score=310.29 Aligned_cols=255 Identities=36% Similarity=0.553 Sum_probs=199.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 169 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (595)
T 2yl4_A 169 LSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGF 248 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888889999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC--
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN-- 80 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~-- 80 (632)
.+.+++|++ ...++.++++.+|++|++++++.+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 328 (595)
T 2yl4_A 249 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN 328 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 234555543 3346778899999999999998654210
Q ss_pred ------C---CC--------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------------
Q 047286 81 ------P---YD--------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY------------ 119 (632)
Q Consensus 81 ------~---~~--------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------------ 119 (632)
. .. +++||++++||+++|+||||||||||+++|.|+...
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i 408 (595)
T 2yl4_A 329 EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 408 (595)
T ss_dssp CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEET
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEh
Confidence 0 00 028999999999999999999999999999854211
Q ss_pred ---CcHHhhcceEEEcccCcccccccccccccccCCCC---CCHHHHHHHHHHccchhhHhhCCccccccc---------
Q 047286 120 ---APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQN---ASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------- 184 (632)
Q Consensus 120 ---~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------- 184 (632)
++..+|++++||+|+|.+|..++.+ |+.++.+. .++++++++++.++++++++++|+|+++.+
T Consensus 409 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSg 486 (595)
T 2yl4_A 409 RQLNPVWLRSKIGTVSQEPILFSCSIAE--NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486 (595)
T ss_dssp TTBCHHHHHHSEEEECSSCCCCSSBHHH--HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCH
T ss_pred hhCCHHHHHhceEEEccCCcccCCCHHH--HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCH
Confidence 1234678899999999999887777 78887654 578889999999999999998888887766
Q ss_pred -----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChh
Q 047286 185 -----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 185 -----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~ 241 (632)
+|++||+++++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+++
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHE 566 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 299999999999999999988889999999999999889999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHH
Q 047286 242 ELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 242 el~~~~~~~~~~~~~~~ 258 (632)
|+.+.+++.|.++++.+
T Consensus 567 ~l~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 567 ELLSKPNGIYRKLMNKQ 583 (595)
T ss_dssp C------C---------
T ss_pred HHHhCCChHHHHHHHHh
Confidence 99875567788777654
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.5e-33 Score=285.87 Aligned_cols=203 Identities=32% Similarity=0.494 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC----------------------C-C-C----cEEEEeeCCCEEEEEcCCCch
Q 047286 54 LNVNAFAAGQAAACKMFETIERIPKINP----------------------Y-D-N----RFLQHVPSGTTVALVGQSGSG 105 (632)
Q Consensus 54 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~----------------------~-~-~----~~~~~i~~Ge~~~ivG~sGsG 105 (632)
+.+..++++.++++|++++++.+++... + . . .+||+|++||+++|+||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 3466788999999999999986543210 0 0 0 199999999999999999999
Q ss_pred HHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccch
Q 047286 106 KSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE 170 (632)
Q Consensus 106 KSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 170 (632)
||||+++|.|+... +...+|++|+||+|+|.+|..++.+ |+.++......+++.++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e--Ni~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD--NIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH--HHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH--HHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999854211 1234688999999999999888877 788887777888999999999999
Q ss_pred hhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCch
Q 047286 171 KSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 171 ~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
+++..+|.|+++.+ +|++||+.+++.+++.|+++.+++|+|+|||+++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99988888777655 3999999999999999999988899999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHh
Q 047286 219 TIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259 (632)
Q Consensus 219 ~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 259 (632)
.+..||+|++|++|+|++.|+++++++. .+.|.+++..+.
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~ 290 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQ 290 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHH
Confidence 9989999999999999999999999876 678888887664
No 20
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=2.9e-32 Score=314.10 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV 164 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (632)
+||++++|++++|+||||||||||+++|.+..... +...+.+++|++|++..++...+..+|+.+..... .+++.+++
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L 532 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKL 532 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHH
Confidence 89999999999999999999999999998422211 11112347899987532333333333554311112 67788889
Q ss_pred HHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh
Q 047286 165 QLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222 (632)
Q Consensus 165 ~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~ 222 (632)
+..++. ..+.+||+|+++++ +|++||+.+++.+.+.|++ .+.|+|++||++..+..
T Consensus 533 ~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 533 IEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred HHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 988873 34678999999888 3999999999999999988 68999999999998865
Q ss_pred -cCeEEEEeCCeEE-EecChhHHhc
Q 047286 223 -ADCIIMVSKGKIV-EKGTHDELIE 245 (632)
Q Consensus 223 -aD~i~vl~~G~i~-~~g~~~el~~ 245 (632)
||+|++|++|+++ ..|+++++..
T Consensus 611 ~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 611 VCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999997 5899888753
No 21
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=4.2e-30 Score=283.43 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=94.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh--------------------------hc--ceEEEccc----Ccc
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE--------------------------QE--KIGLVSKE----PIF 137 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~--------------------------r~--~i~~v~Q~----~~~ 137 (632)
+++||++||+||||||||||+|+|.|+...+.... .. .+....|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 46999999999999999999999986532211100 00 11222222 211
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHH
Q 047286 138 LFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
+.++..+ ++.... ..+++.++++..++. ..+.+||+|+++++ +|++||+.++..
T Consensus 102 ~~~~v~~--~l~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~ 176 (538)
T 3ozx_A 102 LKGTVNE--ILTKID---ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176 (538)
T ss_dssp CCSBHHH--HHHHHC---CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred ccCcHHH--Hhhcch---hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 1121111 111111 112345666666654 45778999999888 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCe
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~ 233 (632)
+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 177 l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999778999999999998865 99999998654
No 22
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=6.5e-30 Score=285.48 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=103.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--------------------------hhcceEEEcccCcccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--------------------------EQEKIGLVSKEPIFLF 139 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--------------------------~r~~i~~v~Q~~~~~~ 139 (632)
+| ++++||+++|+||||||||||+++|.|+...+... .+..+++++|....+.
T Consensus 111 vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 189 (607)
T 3bk7_A 111 LP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 189 (607)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGG
T ss_pred CC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhch
Confidence 55 78999999999999999999999998753221000 1124778888643222
Q ss_pred ----cccccccccccCCCCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 140 ----CDFNEGQYIPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 140 ----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.++.+ ++.... ..+++.++++..++.+ .+.+||+|++++++ |++||+.++
T Consensus 190 ~~~~~tv~e--~l~~~~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 190 KAVKGKVRE--LLKKVD---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GTCCSBHHH--HHHHTC---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhccccHHH--HhhhhH---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 22222 332211 1234567777777643 46789999998883 999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
..+.+.|+++. ++.|+|+|||+++.+.. ||+|++|+++
T Consensus 265 ~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 265 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999985 47899999999998865 9999999865
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-29 Score=283.30 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=97.6
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------hhcceEEE----------------------cccCccccc
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------EQEKIGLV----------------------SKEPIFLFC 140 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------~r~~i~~v----------------------~Q~~~~~~~ 140 (632)
.+++||+++|+||||||||||+|+|.|+...+... ++..+++. +|....+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 46799999999999999999999999753322111 11111111 111000000
Q ss_pred cccc-----ccccccCCCCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 141 DFNE-----GQYIPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 141 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.... .+++... .....+++.++++..++.+ .+.+||+|++++++ |++||+.++
T Consensus 179 ~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 0000 0000000 1124567788888887654 46788999988883 999999999
Q ss_pred HHHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 195 RIVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 195 ~~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999864 7899999999998875 999999998754
No 24
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=2.3e-29 Score=278.28 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=102.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--------------------------hhcceEEEcccCcccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--------------------------EQEKIGLVSKEPIFLF 139 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--------------------------~r~~i~~v~Q~~~~~~ 139 (632)
+| +|++||+++|+||||||||||+|+|.|....+... .+..+++++|+...+.
T Consensus 41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 119 (538)
T 1yqt_A 41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIP 119 (538)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSG
T ss_pred cC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 66 78999999999999999999999999753221100 0124778888653322
Q ss_pred c----ccccccccccCCCCCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHH
Q 047286 140 C----DFNEGQYIPYGKQNASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSE 194 (632)
Q Consensus 140 ~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~ 194 (632)
. +..+ ++.... ..+++.++++..++. ..+.+||+|+++++ +|++||+.++
T Consensus 120 ~~~~~~v~e--~~~~~~---~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~ 194 (538)
T 1yqt_A 120 KAVKGKVIE--LLKKAD---ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194 (538)
T ss_dssp GGCCSBHHH--HHHHHC---SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhhccHHH--HHhhhh---HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 1 2222 222111 123456777777764 35678999999888 3999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
+.+.+.|+++. .+.|+|+|||++..+.. ||+|++|++|
T Consensus 195 ~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999885 47899999999998865 9999999854
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=2.1e-27 Score=237.01 Aligned_cols=170 Identities=36% Similarity=0.548 Sum_probs=139.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||+++|+||||||||||+++|.|+... .+..++++++|++|++.+|..++.+ |+.+
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 105 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID--NISL 105 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHH--HHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHH--HHhc
Confidence 9999999999999999999999999999865321 1233567899999999887666655 7777
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhh---------------CCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDK---------------LPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~---------------l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
+......+++.++++.+++.+.+.. ||+|+++++ +|++||+.+++.++
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 106 ANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185 (247)
T ss_dssp TCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 6544567778888888888776654 555555555 39999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++...+...|..++..
T Consensus 186 ~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp HHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999877899999999999887899999999999999999999987656777776643
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=1.4e-26 Score=232.92 Aligned_cols=171 Identities=38% Similarity=0.553 Sum_probs=138.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
.+||+|++|++++|+||||||||||+++|.|+... .+..+++.++|++|++.+|..++.+ |+.+
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 115 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKY--NILY 115 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHH--HHHT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHH--HHhc
Confidence 39999999999999999999999999999865321 1123567899999999888666655 7777
Q ss_pred CCCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
+......+++.++++.+++.+.+. .||+|+++++ +|++||+.+++.++
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 195 (260)
T 2ghi_A 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195 (260)
T ss_dssp TCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 644445677788888888766654 4566666655 39999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++... ...|.+++..+
T Consensus 196 ~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 254 (260)
T 2ghi_A 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQ 254 (260)
T ss_dssp HHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhh
Confidence 999998778999999999998878999999999999999999999765 45676666543
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=8.4e-27 Score=232.38 Aligned_cols=168 Identities=31% Similarity=0.489 Sum_probs=135.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +..++++++|++|++.+|..++.+ |+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e--nl~ 97 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE--NLT 97 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH--HTT
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHH--HHh
Confidence 399999999999999999999999999998653211 122467899999999887766655 777
Q ss_pred cC-CCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHH
Q 047286 150 YG-KQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
++ ......+++.++++.+++.+.++ +||+|+++++ +|++||+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~ 177 (243)
T 1mv5_A 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177 (243)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCH
T ss_pred hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 76 33455677888888888876665 4555555555 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+++.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++... ...|..++
T Consensus 178 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 235 (243)
T 1mv5_A 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV 235 (243)
T ss_dssp HHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHH
Confidence 99999998778999999999998888999999999999999999998764 34455554
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=8.2e-26 Score=228.50 Aligned_cols=169 Identities=29% Similarity=0.422 Sum_probs=130.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||+++|+||||||||||+++|+|+.... +..++++++||+|++.+|..++.+ |+.+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 115 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE--NIAY 115 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH--HHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH--HHhh
Confidence 99999999999999999999999999998653211 123467899999999887766655 7777
Q ss_pred CCCCCCH-HHHHHHHHHccc---------------hhhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 151 GKQNASD-EHIRPAVQLANA---------------EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~~l---------------~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+...... +++.++++..++ ++...+||+|+++++ +|++||+.+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 6433222 333333332222 234567778887777 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
++.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++... ...|.+++..
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 256 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEA 256 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHH
Confidence 999999854 7899999999998878999999999999999999999765 4667766543
No 29
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=2.5e-26 Score=239.12 Aligned_cols=167 Identities=22% Similarity=0.369 Sum_probs=133.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+|+|.|+.... +. ..|++||||||++.++.. .+..+|
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~-~TV~en 125 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS-RTVFGN 125 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT-SCHHHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC-CCHHHH
Confidence 99999999999999999999999999998753221 11 246789999999976543 333346
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
+.++.. ... .+++.++++.+++.+. ..+||+|++++++ |++||+.+++.+++.
T Consensus 126 v~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 126 VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 655321 112 3457788888887654 5678889988883 999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 201 MVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
|+++.+ +.|+|+|||+++.+.. ||||++|++|+++++|++++++..+...|.+
T Consensus 206 L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 999853 7899999999998865 9999999999999999999999887766654
No 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=8.7e-26 Score=238.31 Aligned_cols=165 Identities=17% Similarity=0.299 Sum_probs=138.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------CCcHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++||+++|+||||||||||+++|.|+.. .++..+++.++||+|++.+|..++.+ |+.+.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e--nl~~~ 117 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK--NLDPN 117 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH--HHCTT
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH--Hhhhc
Confidence 999999999999999999999999999987531 12334678899999999988776666 67643
Q ss_pred CCCCCHHHHHHHHHHccchhhHhh---------------CCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 152 KQNASDEHIRPAVQLANAEKSIDK---------------LPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~---------------l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
. ....+++.++++.+++.+..++ ||+|++++++ |++||+.+++.+++
T Consensus 118 ~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~ 196 (390)
T 3gd7_A 118 A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196 (390)
T ss_dssp C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHH
T ss_pred c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 3 3467888999999998876654 5666666663 89999999999999
Q ss_pred HHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 200 AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 200 ~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.|+++.++.|+|++||+++.+..||||++|++|+|++.|+++++.+.+...|..
T Consensus 197 ~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 197 TLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred HHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 999887789999999999888889999999999999999999999887776653
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=3.6e-25 Score=230.30 Aligned_cols=167 Identities=20% Similarity=0.341 Sum_probs=133.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p-~ltV~eni 101 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP-HLTVYRNI 101 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT-TSCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC-CCCHHHHH
Confidence 99999999999999999999999999998763221 1123567999999997654 34444478
Q ss_pred ccCCCC--C----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 149 PYGKQN--A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~~~--~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
.++... . ..+++.++++.+++.+ ...+||+|++++++ |++||+..+..+++.+
T Consensus 102 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 102 AYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp HTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 776431 1 2356778888888754 46788899999883 9999999999999888
Q ss_pred HHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 202 VKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 202 ~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.++. .+.|+|+|||+++.+. .||||++|++|+|++.|+++++...+...+..
T Consensus 182 ~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 182 IAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp HHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 7763 4789999999998875 59999999999999999999998877665543
No 32
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=1.5e-25 Score=226.51 Aligned_cols=160 Identities=18% Similarity=0.323 Sum_probs=127.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCc--ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPI--FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ...+++.+|||+|+|. +|..++.+
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e- 104 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ- 104 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH-
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH-
Confidence 399999999999999999999999999998653211 1135678999999973 44444444
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
|+.++.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.++
T Consensus 105 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~ 183 (275)
T 3gfo_A 105 -DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183 (275)
T ss_dssp -HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 5655321 122 345677888887754 46788999998883 9999999999999
Q ss_pred HHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|+++. + +.|+|++||+++.+.. ||+|++|++|+++++|+++++...
T Consensus 184 ~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999985 3 8899999999998864 999999999999999999998753
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=2e-25 Score=233.70 Aligned_cols=168 Identities=18% Similarity=0.320 Sum_probs=134.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p-~ltV~eni~~~ 99 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP-HLSVAENMSFG 99 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT-TSCHHHHHTHH
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1113567999999997654 33444477765
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+..+..+++.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 21 122 345777888887654 46778899999883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.+ +.|+|+|||+++.+. .||||++|++|+|++.|+++++...+...|..
T Consensus 180 ~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 180 HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp HHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 53 889999999998875 59999999999999999999999887776654
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=3.4e-25 Score=218.68 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=124.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCCCCCCHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP 162 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (632)
.+||+|++|++++|+||||||||||+++|.|+....... +..+++|++|++.+|..++.+ |+.++.. ....+..+
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~e--nl~~~~~-~~~~~~~~ 102 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKE--NIIFGVS-YDEYRYRS 102 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHH--HHHTTSC-CCHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHH--HhhccCC-cChHHHHH
Confidence 399999999999999999999999999999653322211 234699999999887766655 7777642 23344555
Q ss_pred HHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHHHHHH-HHHhCCce
Q 047286 163 AVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM-VKLVTNQT 209 (632)
Q Consensus 163 ~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l-~~~~~~~t 209 (632)
.++.+++.+.+ .+||+|+++++ +|++||+.+++.+.+.+ +++.+++|
T Consensus 103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t 182 (229)
T 2pze_A 103 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182 (229)
T ss_dssp HHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence 66666655544 46677777666 39999999999999864 55556789
Q ss_pred EEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 210 VVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 210 viiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 183 vi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 183 RILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999998878999999999999999999998764
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=221.51 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=127.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHI 160 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (632)
.+||+|++|++++|+||||||||||+++|.|+ +.|.. +..+++|++|+|.++..++.+ |+.++... ..++.
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~e--nl~~~~~~-~~~~~ 97 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKGSVAYVPQQAWIQNDSLRE--NILFGCQL-EEPYY 97 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECSCEEEECSSCCCCSEEHHH--HHHTTSCC-CTTHH
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEEEEcCCCcCCCcCHHH--HhhCcccc-CHHHH
Confidence 39999999999999999999999999999854 33332 234699999999876556655 67765421 22233
Q ss_pred HHHHHHccch---------------hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH---HHh
Q 047286 161 RPAVQLANAE---------------KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV---KLV 205 (632)
Q Consensus 161 ~~~~~~~~l~---------------~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~---~~~ 205 (632)
.++.+.+++. +...+||+|+++++ +|++||+.+++.+++.|. ++.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~ 177 (237)
T 2cbz_A 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177 (237)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT
T ss_pred HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc
Confidence 4444444332 33457888888877 399999999999999984 444
Q ss_pred CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 206 TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
+++|+|++||+++.+..||++++|++|++++.|+++++... ...|..++.
T Consensus 178 ~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 227 (237)
T 2cbz_A 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227 (237)
T ss_dssp TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHH
Confidence 57899999999998878999999999999999999998765 456666554
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=3.6e-25 Score=220.77 Aligned_cols=129 Identities=35% Similarity=0.477 Sum_probs=109.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH-------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS------------------------------- 537 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~------------------------------- 537 (632)
+|.-++++||+||||||||||+++|.|+++|++ + ...
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCC
Confidence 444456999999999999999999999988742 0 000
Q ss_pred --------HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 538 --------WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 538 --------~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
....++.+++..+|+|+++.+++.+.+||||||||++||||++.
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00124567889999999999999999999999999999999655
Q ss_pred -------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 -------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 -------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||+++.++.||+|++|++|+|++.|+++++++.+++.|++++..|
T Consensus 191 ~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred HcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 788999999989999999999999999999999975478999998766
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=1.4e-25 Score=222.30 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=121.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH----hhcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA----EQEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~----~r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +.+ .++.+|||+|++.++.. ++.+
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 102 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE 102 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHH
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHH
Confidence 399999999999999999999999999998653221 111 13469999999976653 4544
Q ss_pred ccccccCC-----CCCC----HHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHH
Q 047286 145 GQYIPYGK-----QNAS----DEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 145 ~~~i~~~~-----~~~~----~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
|+.++. .... .+++.++++.+++.+ ...+||+|++++++ |++||+.+
T Consensus 103 --nl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 180 (235)
T 3tif_A 103 --NVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180 (235)
T ss_dssp --HHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred --HHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 554421 1112 345667778777643 46789999998883 99999999
Q ss_pred HHHHHHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHH
Q 047286 194 ERIVQAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 194 ~~~i~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el 243 (632)
++.+++.|+++.+ ++|+|++||+++.++.||+|++|++|++++.++.+++
T Consensus 181 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999853 8999999999997777999999999999999887765
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=1.2e-24 Score=227.13 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=133.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++++|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 99 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP-HMTVFENIAFP 99 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT-TSCHHHHHHGG
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 0113567999999987654 34444477775
Q ss_pred CCC--C----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQN--A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~~--~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
... . ..+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+++.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 100 LRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp GSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 321 1 1346788888888754 45678999998883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 180 ~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 180 QQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp HHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 53 789999999998875 5999999999999999999999887666553
No 39
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=4.2e-25 Score=221.86 Aligned_cols=163 Identities=23% Similarity=0.325 Sum_probs=128.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCccccc-ccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|.|+.... ...++++++||+|++.++.. ++.+ |
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e--~ 120 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN--N 120 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH--H
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH--H
Confidence 99999999999999999999999999998653211 12346679999999876543 4444 5
Q ss_pred cccCC---CCCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 148 IPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 148 i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
+.++. .... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~ 200 (263)
T 2olj_A 121 ITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200 (263)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 65531 1112 345677888888754 36689999998883 99999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 200 AMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...+...
T Consensus 201 ~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 253 (263)
T 2olj_A 201 VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253 (263)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSH
T ss_pred HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccH
Confidence 999985 4789999999999886 49999999999999999999997654433
No 40
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=3.6e-25 Score=222.75 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=129.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------------c---HHhhcceEEEcccCcc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------------P---EAEQEKIGLVSKEPIF 137 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------------~---~~~r~~i~~v~Q~~~~ 137 (632)
+||+|++||+++|+||||||||||+++|.|+..+. + ...++.++||+|++.+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 99999999999999999999999999998653211 0 1245679999999876
Q ss_pred cccccccccccccCC---CCCC----HHHHHHHHHHccchhh-----HhhCCcccccccc-----------------cCC
Q 047286 138 LFCDFNEGQYIPYGK---QNAS----DEHIRPAVQLANAEKS-----IDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 138 ~~~~~~~~~~i~~~~---~~~~----~~~~~~~~~~~~l~~~-----i~~l~~g~~~~v~-----------------ts~ 188 (632)
+.. ++..+|+.++. .... .+++.++++.+++.+. +.+||+|++++++ |++
T Consensus 105 ~~~-ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 105 WSH-MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp CTT-SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCC-CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 543 33333665521 1112 3456778888887654 5678999988883 999
Q ss_pred CCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 189 VDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
||+.+++.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHH
Confidence 99999999999999985 4789999999999886 599999999999999999999986544333
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=2.3e-24 Score=226.10 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=129.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+. ...++++|||+|++.+|. .++..+|+.++
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 107 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP-HMTVYENIAFP 107 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 3999999999999999999999999999997632210 113567999999987654 44444478776
Q ss_pred CCC--CC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQN--AS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~~--~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
... .. .+++.++++.+++.+. ..+||+|++++++ |++||+..++.+.+.|+++
T Consensus 108 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 431 22 2457788888887544 5678999999884 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 188 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 188 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp HHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 53 789999999998875 5999999999999999999999887666553
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=1.4e-24 Score=226.81 Aligned_cols=167 Identities=19% Similarity=0.292 Sum_probs=133.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ ....++++|||+|++.+|. .++..+
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~-~ltv~e 101 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-NLTAFE 101 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT-TSCHHH
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCC-CCCHHH
Confidence 399999999999999999999999999998763221 1123567999999987654 344444
Q ss_pred ccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+
T Consensus 102 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 102 NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (353)
T ss_dssp HHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 7776532 112 345778888888754 46688999998883 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+.
T Consensus 182 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 9999853 789999999998875 5999999999999999999999887655543
No 43
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=9.1e-25 Score=227.47 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=132.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+.++
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 111 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ-HMTVYDNVSFG 111 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT-TSCHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1123678999999987654 34444477664
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+++.|+++
T Consensus 112 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 112 LREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 21 112 346778888888754 46678999998883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...+
T Consensus 192 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 53 789999999998875 499999999999999999999987765544
No 44
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=9.1e-25 Score=228.30 Aligned_cols=167 Identities=25% Similarity=0.307 Sum_probs=132.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+|+|.|+...+. ...++++|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 99 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP-HMTVYKNIAFP 99 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT-TSCHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 3999999999999999999999999999997632210 113567999999987654 34444477664
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 100 LELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 21 112 345778888888754 46789999999883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 180 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 180 QKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp HHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 53 789999999998875 5999999999999999999999887665553
No 45
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=1e-24 Score=227.02 Aligned_cols=166 Identities=21% Similarity=0.314 Sum_probs=133.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+|+|.|+...+ ....++++|||+|++.+|. .++..+|+.++
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~enl~~~ 96 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP-HMNVKKNLEFG 96 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCT-TSCHHHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1124678999999987654 33434477664
Q ss_pred CC---CCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC-
Q 047286 152 KQ---NASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT- 206 (632)
Q Consensus 152 ~~---~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~- 206 (632)
.. ....+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+.|+++.+
T Consensus 97 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 97 MRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 21 112377888999888754 46788999998883 999999999999999999853
Q ss_pred -CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 207 -NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 207 -~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+
T Consensus 177 ~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 177 NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 789999999998775 599999999999999999999987765544
No 46
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.1e-24 Score=216.70 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=123.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-cccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~i 148 (632)
+||++++||+++|+||||||||||+++|.|+.... +.. .++.++|++|++.+|.. ++.+ |+
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e--nl 102 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE--NL 102 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH--HH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH--HH
Confidence 99999999999999999999999999998653211 111 24459999999976654 5544 66
Q ss_pred ccCC-C--CCC--HHHHHHHHHHcc-ch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 149 PYGK-Q--NAS--DEHIRPAVQLAN-AE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~-~--~~~--~~~~~~~~~~~~-l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
.++. . ... .+.+.++++..+ +. +...+||+|++++++ |++||+.+++.+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 182 (240)
T 1ji0_A 103 MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182 (240)
T ss_dssp HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 5542 1 111 244566666663 54 346678999988883 9999999999999999
Q ss_pred HHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 202 VKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 202 ~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 183 ~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9985 5789999999998765 599999999999999999999864
No 47
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=2e-24 Score=214.16 Aligned_cols=161 Identities=23% Similarity=0.315 Sum_probs=127.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++ |+++|+||||||||||+++|.|+..+. ....+++++|++|++.++.. ++..+|+.++
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~-ltv~enl~~~ 94 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPH-LSVYRNIAYG 94 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTT-SCHHHHHHTT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCC-CcHHHHHHHH
Confidence 39999999 999999999999999999998763221 11235679999999876543 3333367665
Q ss_pred CCCC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC
Q 047286 152 KQNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT 206 (632)
Q Consensus 152 ~~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~ 206 (632)
.... ..+++.++++..++.+ .+.+||+|++++++ |++||+.+++.+++.|+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3211 1355777888887654 46789999998883 999999999999999999853
Q ss_pred --CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 207 --NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 207 --~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 175 ~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 789999999998875 59999999999999999999987654
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=1.6e-24 Score=217.87 Aligned_cols=129 Identities=35% Similarity=0.455 Sum_probs=107.6
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------h---cHHH-------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------V---IYSW------------------------------- 538 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~---~~~~------------------------------- 538 (632)
+|+-++++||+||||||||||+++|.|+++|.. + ....
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~ 121 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCC
Confidence 344446999999999999999999999987521 0 0000
Q ss_pred --H------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 539 --I------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 539 --~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
. ..++.+++..+|+|+||.+++.+.+||||||||++||||++.
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0 113456777899999999999999999999999999999655
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++||+++.++.||+|++|++|+|++.|+++++++. ++.|++++..|.
T Consensus 202 ~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 255 (260)
T 2ghi_A 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQS 255 (260)
T ss_dssp TTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhhh
Confidence 688999999989999999999999999999999987 899999998764
No 49
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=3.1e-24 Score=216.23 Aligned_cols=158 Identities=23% Similarity=0.357 Sum_probs=126.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
+||+|++||+++|+||||||||||+|+|.|+... .+...++.++|++|++.+++ .++.+ |+.
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 107 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE--VIQ 107 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH--HHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH--HHH
Confidence 9999999999999999999999999999865321 12335677999999987543 34444 666
Q ss_pred cCCC----CCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------------ccCCCCHHHHHHHH
Q 047286 150 YGKQ----NASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~~----~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------------~ts~LD~~~~~~i~ 198 (632)
++.. ....+++.++++.+++. +.+.+||+|+++++ +|++||+.+++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 108 MGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp GGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred hhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 5432 22356678888888764 34677899987665 28999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.|+++.+ +.|+|++||+++.+. .||+|++|++|+++++|+++++..
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred HHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999853 469999999999886 599999999999999999999864
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=3.5e-24 Score=225.14 Aligned_cols=167 Identities=20% Similarity=0.308 Sum_probs=132.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccCcccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEPIFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~~~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++++|||+|++.+|. .++..
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~-~ltv~ 99 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP-HMTVY 99 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCT-TSCHH
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCC-CCCHH
Confidence 399999999999999999999999999998763211 1113567999999987654 34444
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
+|+.++.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.++
T Consensus 100 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 179 (372)
T 1g29_1 100 DNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (372)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 47766421 112 345778888887754 46688999999884 9999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 180 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHH
Confidence 99999853 789999999998875 5999999999999999999999887666553
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=2e-24 Score=216.10 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccc-cccccccccccCCC--------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQ-------- 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~-------- 153 (632)
.+||+|++||+++|+||||||||||+++|.|+....... .++.++|++|++.++. .++.+ |+.++..
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~e--nl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLD--IVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHH--HHHGGGGGGSCTTCC
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHH--HHHHhhhhhcccccC
Confidence 399999999999999999999999999999654332222 3567999999987653 34444 5655421
Q ss_pred --CCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--Cc
Q 047286 154 --NASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQ 208 (632)
Q Consensus 154 --~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~ 208 (632)
....+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+.|+++.+ ++
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011345778888888754 46689999998883 999999999999999999853 78
Q ss_pred eEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+. .||++++|++|+ ++.|+++++..
T Consensus 181 tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999885 599999999999 99999998853
No 52
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2.3e-24 Score=215.77 Aligned_cols=158 Identities=21% Similarity=0.353 Sum_probs=126.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
+||++++||+++|+||||||||||+++|.|+..+. +...+++++|++|++.++.. ++.+ |+.+
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e--nl~~ 111 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE--YLRF 111 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH--HHHH
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH--HHHH
Confidence 99999999999999999999999999998763221 12356789999999876543 4444 5654
Q ss_pred CCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+++.|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 310 112 245677888887754 46689999998883 999999999999999999
Q ss_pred Hh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 204 LV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 204 ~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 192 l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 85 47899999999998876 99999999999999999999864
No 53
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=1e-24 Score=217.34 Aligned_cols=129 Identities=29% Similarity=0.467 Sum_probs=107.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------------hcH-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------VIY----- 536 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------~~~----- 536 (632)
+|+-++++||+||||||||||+++|.|+++|++ +..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~ 103 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD 103 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCC
Confidence 444456999999999999999999999988732 000
Q ss_pred --HHH------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 537 --SWI------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 537 --~~~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
... ..++.+++..+|.|+++.+++.+.+||||||||++||||++.
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 000 113456778899999999999999999999999999999655
Q ss_pred --------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++||+++.++.||+|++|++|+|++.|+++++++. .+.|++++..+.
T Consensus 184 ~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~ 239 (243)
T 1mv5_A 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQL 239 (243)
T ss_dssp HHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCC
T ss_pred HhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhhh
Confidence 678999999989999999999999999999999987 788999987654
No 54
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=6.3e-24 Score=214.29 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=128.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------HHhhcceEEEcccC--ccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------EAEQEKIGLVSKEP--IFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------~~~r~~i~~v~Q~~--~~~~~~~~~~~~i~~ 150 (632)
.+||+|++||+++|+||||||||||+++|.|+..... ...++.++|++|+| .++..++.+ |+.+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--nl~~ 102 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD--EVAF 102 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH--HHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH--HHHH
Confidence 3999999999999999999999999999986632210 13467899999996 334445544 6655
Q ss_pred CCC-----CCCHHHHHHHHHHccch--hh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHH
Q 047286 151 GKQ-----NASDEHIRPAVQLANAE--KS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMV 202 (632)
Q Consensus 151 ~~~-----~~~~~~~~~~~~~~~l~--~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~ 202 (632)
+.. ....+++.++++.+++. +. +.+||+|++++++ |++||+.+++.+.+.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 182 (266)
T 2yz2_A 103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 182 (266)
T ss_dssp TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 421 22356788899998886 44 5678899988883 99999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 183 ~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 183 KWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 985 57899999999998875 999999999999999999998654
No 55
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=1.2e-23 Score=209.76 Aligned_cols=159 Identities=17% Similarity=0.250 Sum_probs=128.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+... .+..++++++|++|++.++.. ++.+ |+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 95 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH--YLT 95 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH--HHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH--HHH
Confidence 38999999999999999999999999999876322 122346679999999976543 4444 676
Q ss_pred cCCC-CCCHHHHHHHHHHccchhh----HhhCCccccccc------------------------ccCCCCHHHHHHHHHH
Q 047286 150 YGKQ-NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV------------------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v------------------------~ts~LD~~~~~~i~~~ 200 (632)
++.. ....+++.++++..++.+. ..+||+|+++++ +|++||+.+++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~ 175 (249)
T 2qi9_C 96 LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175 (249)
T ss_dssp TTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHH
T ss_pred HhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHH
Confidence 6531 1236778889998887543 567888886655 3899999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 201 MVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 176 l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99985 5789999999999885 599999999999999999999863
No 56
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.90 E-value=3.6e-24 Score=215.10 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=123.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCcccc-ccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~~~~-~~~~~~~~i 148 (632)
+||++++||+++|+||||||||||+|+|.|+.... + ...++.++||+|++.++. .++.+ |+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e--nl 103 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE--NL 103 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH--HH
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH--HH
Confidence 89999999999999999999999999998653211 1 123567999999987654 24444 56
Q ss_pred ccCCC----C-----------C-C---HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCC
Q 047286 149 PYGKQ----N-----------A-S---DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 149 ~~~~~----~-----------~-~---~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~ 188 (632)
.++.. . . . .+++.++++..++.+ .+.+||+|++++++ |++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 183 (257)
T 1g6h_A 104 LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183 (257)
T ss_dssp HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 55321 1 1 1 245677888887654 46789999998883 999
Q ss_pred CCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhH
Q 047286 189 VDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~e 242 (632)
||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 184 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 184 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999985 4789999999998875 599999999999999999888
No 57
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1.1e-23 Score=242.92 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=68.9
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl- 229 (632)
+...+||+|.++++ +|++||+...+.+.+.|+++.+ |.|+|+|||+++.+..||+|++|
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lg 539 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIG 539 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 45778999998777 3899999999999999999864 78999999999999889999999
Q ss_pred -----eCCeEEEecChhHHhcCC
Q 047286 230 -----SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~~~ 247 (632)
++|+++++|+++++...+
T Consensus 540 pgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 540 PGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp SSSGGGCSEEEEEECHHHHHHSC
T ss_pred CCcccCCCEEEEeechhhhhcCc
Confidence 899999999999987653
No 58
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=3.8e-24 Score=212.16 Aligned_cols=130 Identities=28% Similarity=0.315 Sum_probs=107.3
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------hcH--------------HHH---HHHH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------VIY--------------SWI---IIKC 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------~~~--------------~~~---~~~~ 543 (632)
+|+-++++||+||||||||||+++|.|+++|++ ... ... ..++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 106 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhh
Confidence 344456999999999999999999999988743 000 000 1123
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------------hccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------------CGCG 585 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------------~~ia 585 (632)
.+++..+|.|++|.+++.+.+||||||||++||||++. +++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt 186 (237)
T 2cbz_A 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186 (237)
T ss_dssp HHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 35677789999999999999999999999999999443 5679
Q ss_pred cchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 586 SPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 586 hrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+++.+..||+|++|++|+|++.|+++++++. ++.|+++++.|.+
T Consensus 187 H~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~~ 231 (237)
T 2cbz_A 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRTYAS 231 (237)
T ss_dssp SCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHTCC
T ss_pred cChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHHHHh
Confidence 99999889999999999999999999999987 8999999988764
No 59
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=3.2e-24 Score=217.45 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=125.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-----------------CcHHhhcceEEEcccCcc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLVSKEPIF-LFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----------------~~~~~r~~i~~v~Q~~~~-~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|+|+... .+...+++++|++|++.+ +...++..+|
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 9999999999999999999999999999865321 122356789999999864 3332233336
Q ss_pred cccCCC-------CCC---HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 148 IPYGKQ-------NAS---DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 148 i~~~~~-------~~~---~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+.++.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHH
Confidence 665421 112 245677888887654 46789999998883 99999999999
Q ss_pred HHHHHHHHhC-CceE--EEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 197 VQAAMVKLVT-NQTV--VIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 197 i~~~l~~~~~-~~tv--iiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++.|+++.+ ++|+ |++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 200 l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999998854 7899 99999999875 599999999999999999998853
No 60
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=3.9e-24 Score=216.20 Aligned_cols=124 Identities=35% Similarity=0.436 Sum_probs=105.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH----------------------------------H
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS----------------------------------W 538 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~----------------------------------~ 538 (632)
++++||+||||||||||+++|.|+++|++ + ... .
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 124 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME 124 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHH
Confidence 45899999999999999999999998742 0 000 0
Q ss_pred ------HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 539 ------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 539 ------~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
....+.+++..+|+|+++.+++.+.+||||||||++||||++.
T Consensus 125 ~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 125 EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 0113457788899999999999999999999999999999654
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||+++.+..||+|++|++|+|++.|+++++++. .+.|+++++.+
T Consensus 205 ~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 257 (271)
T 2ixe_A 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEAL 257 (271)
T ss_dssp TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC-
T ss_pred hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHHh
Confidence 678999999988999999999999999999999987 89999998765
No 61
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.90 E-value=4.6e-24 Score=209.82 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---Hhh-cceEEEcccCccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQ-EKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r-~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
+||++++||+++|+||||||||||+++|.|+..+. +. ..+ +.++|++|++.++. ..+..+
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~-~~tv~e 101 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP-ELTALE 101 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT-TSCHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC-CCCHHH
Confidence 99999999999999999999999999998653211 11 123 67999999987654 333333
Q ss_pred ccccCCC--CC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++.. .. ..+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 181 (224)
T 2pcj_A 102 NVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181 (224)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5654311 11 1345677888887653 46789999998883 99999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHhhcCeEEEEeCCeEEEecC
Q 047286 200 AMVKLV-TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~ 239 (632)
.|+++. +++|+|++||+++.+..||++++|++|+++++|+
T Consensus 182 ~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 182 IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999985 4789999999998886799999999999999885
No 62
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=1.2e-23 Score=214.24 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=121.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+||+|++|++++|+||||||||||+++|.|+ +.|.. +..+++|++|++.+|..++.+ |+. +.. ....++.
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e--nl~-~~~-~~~~~~~ 130 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQNSWIMPGTIKE--NII-GVS-YDEYRYR 130 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCSCEEEECSSCCCCSSBHHH--HHH-TTC-CCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEEEEEeCCCccCcccHHH--Hhh-Ccc-cchHHHH
Confidence 9999999999999999999999999999855 33332 234699999999887766665 665 422 2334445
Q ss_pred HHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHHHHHH-HHHhCCc
Q 047286 162 PAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM-VKLVTNQ 208 (632)
Q Consensus 162 ~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l-~~~~~~~ 208 (632)
++++.+++.+.+ .+||+|+++++ +|++||+.+++.+++.+ +++.+++
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~ 210 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 210 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTS
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCC
Confidence 555656655443 46777777766 39999999999999864 4555688
Q ss_pred eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 211 tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999888899999999999999999999864
No 63
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=1.9e-23 Score=206.05 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=102.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------h----cHHH-----HHHHH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ----------------------------V----IYSW-----IIIKC 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------~----~~~~-----~~~~~ 543 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .... ...++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 109 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCc
Confidence 455556999999999999999999999998743 0 0000 01145
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSP 587 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahr 587 (632)
.+++..+|.++++.+++++.+||||||||++||||+.. +++||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~ 189 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 57888899999999999999999999999999999554 678999
Q ss_pred hhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 588 PYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 588 l~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
++.++.||+|++|++|+|++.|+++++++. ++.|.+++
T Consensus 190 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 190 MEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred hHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 998888999999999999999999999986 67787765
No 64
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=221.33 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=100.2
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh-----------hcH-------------------------------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ-----------VIY------------------------------------- 536 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-----------~~~------------------------------------- 536 (632)
+++++|+||||||||||+++|.|+++++. ...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 45899999999999999999999975210 000
Q ss_pred -HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 537 -SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 537 -~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
.....++.+++...|.+|+|.++++|.+||||||||+|||||+..
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 011225567899999999999999999999999999999999655
Q ss_pred -hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||+++.+..||+|+||++|+|++.|+++|+++++...|..
T Consensus 207 vi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp EEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred EEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 7889999999999999999999999999999999875555543
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.9e-23 Score=209.77 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=125.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------------hhcceE-EEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------------EQEKIG-LVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------------~r~~i~-~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||+++ |++++|+||||||||||+++|+|+. ..... .+++++ |++|++.+ ..++.+ |+.++.
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~e--nl~~~~ 98 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVND--IVYLYE 98 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHH--HHHHHH
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHH--HHHHhh
Confidence 899999 9999999999999999999999764 32111 145799 99999976 555555 565432
Q ss_pred C--CCCHHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCc
Q 047286 153 Q--NASDEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQ 208 (632)
Q Consensus 153 ~--~~~~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~ 208 (632)
. ....+++.++++..++. + ...+||+|++++++ |++||+.+++.+.+.|+++.+
T Consensus 99 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-- 176 (263)
T 2pjz_A 99 ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-- 176 (263)
T ss_dssp HHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--
T ss_pred hhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--
Confidence 1 34567788889888876 4 35689999998883 999999999999999998855
Q ss_pred eEEEEecCchHHh-hcC-eEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIR-NAD-CIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~-~aD-~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 177 tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999998875 599 999999999999999999864
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=2.1e-23 Score=208.64 Aligned_cols=156 Identities=16% Similarity=0.259 Sum_probs=115.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HH-hhcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EA-EQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~-~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|.|+..+.| .. .+..++|++|++.+|.. ++..+|
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~tv~e~ 100 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG-VTIANF 100 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS-CBHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC-CCHHHH
Confidence 999999999999999999999999999997511111 11 13458999999976543 232235
Q ss_pred cccCC-----CCCC----HHHHHHHHHHccc-hh----hHhh-CCcccccccc-----------------cCCCCHHHHH
Q 047286 148 IPYGK-----QNAS----DEHIRPAVQLANA-EK----SIDK-LPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 148 i~~~~-----~~~~----~~~~~~~~~~~~l-~~----~i~~-l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+.++. .... .+++.++++..++ .+ .+.+ ||+|++++++ |++||+.+++
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 101 LRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 54321 0011 2456777887777 33 3455 9999998883 9999999999
Q ss_pred HHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhH
Q 047286 196 IVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 196 ~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~e 242 (632)
.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++.
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999985 47899999999998875 59999999999999999873
No 67
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=8.3e-23 Score=206.10 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=120.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HHh-hcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAE-QEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~~-r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+|+|.|+..+.| ... +..++|++|++.++.. ++..+|
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~-~tv~e~ 117 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG-VSNQFF 117 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT-CBHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc-ccHHHH
Confidence 999999999999999999999999999997621111 111 3459999999876543 222223
Q ss_pred ccc---------CCCCCC----HHHHHHHHHHccch-h----hHh-hCCcccccccc-----------------cCCCCH
Q 047286 148 IPY---------GKQNAS----DEHIRPAVQLANAE-K----SID-KLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 148 i~~---------~~~~~~----~~~~~~~~~~~~l~-~----~i~-~l~~g~~~~v~-----------------ts~LD~ 191 (632)
+.+ +..... .+++.++++..++. + .+. +||+|++++++ |++||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 118 LQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 322 111112 24567788888774 2 233 49999998883 999999
Q ss_pred HHHHHHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHHh
Q 047286 192 QSERIVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 192 ~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el~ 244 (632)
.+++.+++.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 198 ~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999885 47899999999998864 8999999999999999988764
No 68
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.86 E-value=6.1e-22 Score=201.54 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=95.6
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------h-----cHHH-----HHHHHHHHHh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------V-----IYSW-----IIIKCTNFIA 548 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------~-----~~~~-----~~~~~~~~i~ 548 (632)
++++||+||||||||||+++|.|+++|++ + .... ...++.+++.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 45899999999999999999999998743 0 0000 0113456788
Q ss_pred cCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccchhhhh
Q 047286 549 SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSPPYHYK 592 (632)
Q Consensus 549 ~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahrl~~~~ 592 (632)
.+|.++++.+++.+.+||||||||++||||+.. +++||.+..++
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 899999999999999999999999999999544 67899999988
Q ss_pred cCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 593 NADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 593 ~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
.||+|++|++|++++.|+++++++. ...|.+.+
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~ 256 (290)
T 2bbs_A 224 KADKILILHEGSSYFYGTFSELQNL-RPDFSSKL 256 (290)
T ss_dssp HSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred cCCEEEEEECCeEEEeCCHHHHhhh-cHHHHHHH
Confidence 8999999999999999999999874 55565543
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.85 E-value=5.9e-24 Score=216.76 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=123.4
Q ss_pred CCcCHHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------CCCCc-----------
Q 047286 436 GDATFGEVFKFLSE-FGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------MTPST----------- 497 (632)
Q Consensus 436 g~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~~~~~----------- 497 (632)
+..+.+...+|+.. ....++..+......++++..+.+|+.++++.+++...+.... .....
T Consensus 38 ~~~~~~n~~afl~~~~q~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~vL~ 117 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALK 117 (305)
T ss_dssp TTTTCHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcChhhhc
Confidence 33445666666622 1123466677777888899999999999987654321110000 00000
Q ss_pred -ccccEEEeeEEEEEecCCCChHHHHHhhhcCCC-------hhh--hcHHHHH-----------HHHHHHHhc-CCCccC
Q 047286 498 -VRGDIVFEHTVALVGENGNGKSTVISLAERFHN-------PEQ--VIYSWII-----------IKCTNFIAS-LPQGSD 555 (632)
Q Consensus 498 -~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~-------~~~--~~~~~~~-----------~~~~~~i~~-lp~g~d 555 (632)
+.-+|+-++++|||||||||||||+++|.|+|. ++. ++..... ..+++++.. ||+|+|
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALD 197 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGG
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHHhHccCC
Confidence 011233345899999999999999999999861 110 1111111 146789998 999998
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhh------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 556 LNVGERGLQLSGGLKQRIARTRARNY------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 556 t~vge~G~~LSgGQrQRiaiARA~~~------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
|.+|||||||| |||+++ ..++||+++++.||+| ||++|+|++.|+|++|
T Consensus 198 ------g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el--- 264 (305)
T 2v9p_A 198 ------GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPC-TDESGEQPFNITDADW--- 264 (305)
T ss_dssp ------TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGGGTTTEEEEECCCCC-CCC---CCCCCCHHHH---
T ss_pred ------ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHHHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---
Confidence 78999999999 999665 3459999999999999 9999999999999999
Q ss_pred CCchhHHHHHhh
Q 047286 618 TDGTYASLTALH 629 (632)
Q Consensus 618 ~~g~y~~l~~~~ 629 (632)
++.|++++..+
T Consensus 265 -~~~y~~l~~~~ 275 (305)
T 2v9p_A 265 -KSFFVRLWGRL 275 (305)
T ss_dssp -HHHHHHSTTTT
T ss_pred -HHHHHHHHHHc
Confidence 47899998765
No 70
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=4.2e-21 Score=199.72 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=88.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-------------------------H--------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-------------------------I-------- 540 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-------------------------~-------- 540 (632)
+++||+||||||||||+++|.|++.|++ ...... +
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999999998853 000000 0
Q ss_pred -------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 541 -------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 135 ~~~~~~~~~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp CCHHHHHHHHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 0112222222 44444556678999999999999999544
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.++.++ .||+|+||++|+|++.|++++++..+...|.+
T Consensus 213 ~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 78899999986 59999999999999999999999875555543
No 71
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=1.1e-21 Score=190.73 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=112.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------HHhhcceEEEcccCccccc-ccccccccccCC--
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPYGK-- 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~-- 152 (632)
+||++++||+++|+||||||||||+++|+|+..... ...++.++|++|++.+|.. ++.+ |+.++.
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e--nl~~~~~~ 105 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVED--YLKAVASL 105 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHH--HHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHH--HHHHHHHh
Confidence 899999999999999999999999999986532210 0246789999999976543 4444 554431
Q ss_pred -C-CCCHHHHHHHHHHccch---hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh-CCce
Q 047286 153 -Q-NASDEHIRPAVQLANAE---KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV-TNQT 209 (632)
Q Consensus 153 -~-~~~~~~~~~~~~~~~l~---~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~-~~~t 209 (632)
. ....+++.++++.+++. +.+.+||+|++++++ |++||+.+++.+.+.|+++. +++|
T Consensus 106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 106 YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 1 22366788889988874 456689999998883 99999999999999999885 4789
Q ss_pred EEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 210 VVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 210 viiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+|++||+++.+.. ||+++ +..|+|
T Consensus 186 iiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 186 VIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp EEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred EEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999998876 77775 455665
No 72
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=1.2e-20 Score=197.59 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=89.8
Q ss_pred EeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------hcHHHH------
Q 047286 504 FEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------------VIYSWI------ 539 (632)
Q Consensus 504 f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------------~~~~~~------ 539 (632)
-++++||+||||||||||+++|.|+++|++ +.....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 345899999999999999999999998743 000000
Q ss_pred ---HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 540 ---IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 540 ---~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 185 (381)
T 3rlf_A 108 EVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (381)
T ss_dssp HHHHHHHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence 11223334333 45445556677899999999999999654
Q ss_pred --hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 --CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 --~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.+..+ +.||+|+||++|+|++.|+++|+++++...|..
T Consensus 186 tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 7889999876 469999999999999999999999875555543
No 73
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.82 E-value=1.5e-20 Score=195.49 Aligned_cols=120 Identities=22% Similarity=0.223 Sum_probs=88.6
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---------------------------cHHHH-------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---------------------------IYSWI------- 539 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---------------------------~~~~~------- 539 (632)
+-+++++|+||||||||||+++|.|+++|++ + ....-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 3345899999999999999999999988743 0 00000
Q ss_pred --------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 540 --------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 540 --------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 01122222222 44444555667899999999999999554
Q ss_pred -------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.+..+. .||+|+||++|+|++.|+++|++.++...|..
T Consensus 186 ~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 78899998774 69999999999999999999999875555443
No 74
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.82 E-value=1.8e-20 Score=189.17 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=85.9
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h--cHH---HH-----------------------H---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V--IYS---WI-----------------------I--- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~--~~~---~~-----------------------~--- 540 (632)
+|.-++++||+||||||||||+++|.|+++|++ + ... .. +
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 344456999999999999999999999998743 1 000 00 0
Q ss_pred ------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 541 ------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 541 ------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0111222222 34444455667899999999999999544
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|+|++.|++++++..
T Consensus 188 ~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 68899999986 5999999999999999999999875
No 75
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=4.7e-20 Score=211.80 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=67.7
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl- 229 (632)
..+.+||+|..++| +|++||+...+.+.+.|++++ .|.|+|+|+|+++.+..||+|++|
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEec
Confidence 45678899988776 389999999999999999986 589999999999998889999999
Q ss_pred -----eCCeEEEecChhHHhcC
Q 047286 230 -----SKGKIVEKGTHDELIED 246 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~~ 246 (632)
++|++++.|+++++...
T Consensus 597 p~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 597 PGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SSSGGGCCSCCEEECHHHHHHC
T ss_pred CccccCCCEEEEeeCHHHhhhh
Confidence 79999999999998765
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=9.2e-20 Score=208.66 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=67.3
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl- 229 (632)
....+||+|..++| +|++||+...+.+.+.|++++ .|.|||+|+|+++.+..||+|++|
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeC
Confidence 44678899988777 389999999999999999986 478999999999999889999999
Q ss_pred -----eCCeEEEecChhHHhcC
Q 047286 230 -----SKGKIVEKGTHDELIED 246 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~~ 246 (632)
++|+++++|+++++...
T Consensus 580 pgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 580 PGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp SSSGGGCCSEEEEECTTTTTTC
T ss_pred CCccCCCCEEEEecCHHHHHhh
Confidence 79999999999988653
No 77
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.80 E-value=4.9e-20 Score=182.32 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=80.0
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHH-------H-------------------H---
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSW-------I-------------------I--- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~-------~-------------------~--- 540 (632)
|.-++++||+||||||||||+++|.|+++|++ ..... . +
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 33345899999999999999999999998853 00000 0 0
Q ss_pred ---------------HHHHHHHhcCCCccCccc-ccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDLNV-GERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt~v-ge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..+.+.+..+ |++... .....+||||||||++||||+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~ 185 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHC--CCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0011222221 333222 45677899999999999999554
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALM 615 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~ 615 (632)
+++||.+...+.||+|++|++|+|++.|+-+++.
T Consensus 186 ~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 7889999988899999999999999999877654
No 78
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=3.4e-20 Score=184.15 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=88.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH-----------------------H-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI-----------------------I----- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~-----------------------~----- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + ..... +
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 344445899999999999999999999998743 0 00000 0
Q ss_pred ---------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 541 ---------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 541 ---------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
..+.+.+..++ |++........+||||||||++||||+..
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 01223344443 56666677788999999999999999654
Q ss_pred ------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 187 ~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 187 QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 6789999766 57999999999999999999999863
No 79
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.80 E-value=5.3e-20 Score=185.25 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=84.2
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH----------------------H-------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------I------- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------~------- 540 (632)
|.-++++||+||||||||||+++|.|+++|++ ...... +
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 33345899999999999999999999998853 001000 0
Q ss_pred ------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHh-------h--------------------------
Q 047286 541 ------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARN-------Y-------------------------- 581 (632)
Q Consensus 541 ------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~-------~-------------------------- 581 (632)
..+.+.+..+ |+.........+||||||||++||||+. .
T Consensus 114 ~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp CSTTHHHHHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 0112222222 2333333445689999999999999976 4
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|++++++..
T Consensus 192 ~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp HHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred HHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 67899999886 6999999999999999999999864
No 80
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.80 E-value=1.1e-19 Score=189.84 Aligned_cols=119 Identities=25% Similarity=0.257 Sum_probs=87.9
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------hc------HHHH----
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------VI------YSWI---- 539 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------~~------~~~~---- 539 (632)
|+-+++++|+||||||||||+++|.|+++|++ +. ....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 33345899999999999999999999988743 00 0000
Q ss_pred -----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 540 -----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 540 -----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 106 ~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (362)
T 2it1_A 106 PREEIDKKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183 (362)
T ss_dssp CHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC
Confidence 01122333333 44444455667899999999999999554
Q ss_pred ----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 184 g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 7789998876 5799999999999999999999998644344
No 81
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.79 E-value=1.6e-19 Score=188.03 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=88.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cH------HHH---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IY------SWI--- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~------~~~--- 539 (632)
+|+-+++++|+||||||||||+++|.|+++|++ + .. ...
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 444456999999999999999999999988743 0 00 000
Q ss_pred ------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 540 ------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 540 ------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 117 ~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 117 VPKDEMDARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp CCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 01122333333 44444455667899999999999999554
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 195 ~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 195 MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 7789999877 4699999999999999999999997643344
No 82
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.79 E-value=1.2e-19 Score=189.42 Aligned_cols=118 Identities=24% Similarity=0.237 Sum_probs=87.3
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHHH----------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWII---------- 540 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~~---------- 540 (632)
+-+++++|+||||||||||+++|.|+++|++ + .....+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS 106 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 3345899999999999999999999988743 0 000000
Q ss_pred -----HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 541 -----IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 541 -----~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 107 ~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 107 KDEVEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHTTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0122333333 44444455567899999999999999554
Q ss_pred ---hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 185 ~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 229 (359)
T 2yyz_A 185 ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229 (359)
T ss_dssp CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 6789998876 5799999999999999999999998644344
No 83
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.79 E-value=2.3e-19 Score=179.98 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=83.9
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHH----------------------H--------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWI----------------------I-------- 540 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~----------------------~-------- 540 (632)
++++||+||||||||||+++|.|+++|++ +. .... +
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~ 129 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR 129 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc
Confidence 34899999999999999999999988743 10 0000 0
Q ss_pred --------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 541 --------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 541 --------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||++.
T Consensus 130 ~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 130 KWPREKAEAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp CCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 0111222222 34444455667899999999999999654
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+++++++.
T Consensus 208 ~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 68899999886 6999999999999999999999875
No 84
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.79 E-value=1.7e-19 Score=189.21 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=87.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHH-------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWI------------- 539 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~------------- 539 (632)
+++++|+||||||||||+++|.|+++|++ + .....
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35899999999999999999999988743 0 00000
Q ss_pred --HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 540 --IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 540 --~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 117 ~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 117 EIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 01122333333 44444555677999999999999999554
Q ss_pred -hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++++...|
T Consensus 195 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 7789998876 5799999999999999999999998644444
No 85
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.79 E-value=2.6e-19 Score=177.38 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=85.9
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHH---------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWI--------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~--------- 539 (632)
+|+- +++||+||||||||||+++|.|+++|++ + .....
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 4555 6899999999999999999999988743 0 00000
Q ss_pred ----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 540 ----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 540 ----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g 177 (240)
T 2onk_A 100 RVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177 (240)
T ss_dssp HHHHHHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 01122334433 44444455567899999999999999554
Q ss_pred ---hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 178 ~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 6789999876 56999999999999999999999875
No 86
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=7.9e-19 Score=200.93 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=67.6
Q ss_pred hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE
Q 047286 170 EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 170 ~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl 229 (632)
+.....||+|..++| +|++||+...+.+.+.|+++++ +.|+|+|+|+++.+..||+|++|
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 345778888987766 3899999999999999999864 78999999999988889999999
Q ss_pred ------eCCeEEEecChhHHhcC
Q 047286 230 ------SKGKIVEKGTHDELIED 246 (632)
Q Consensus 230 ------~~G~i~~~g~~~el~~~ 246 (632)
++|+++..|+++++.+.
T Consensus 454 gpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 454 GPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp CSSSGGGCCSEEEEECGGGGGGC
T ss_pred CCCcccCCCEEEEecCHHHHHhc
Confidence 79999999999998754
No 87
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.78 E-value=3.7e-19 Score=178.90 Aligned_cols=113 Identities=20% Similarity=0.317 Sum_probs=84.6
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------------H----HHH-----------------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------------Y----SWI----------------- 539 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------------~----~~~----------------- 539 (632)
+-++++||+||||||||||+++|.|+++|++ +. . ...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 109 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMT 109 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCc
Confidence 3345899999999999999999999988753 11 0 000
Q ss_pred H-HH-------------------HHHHHhcCCCccCcc-cccCCCCCChHHHHHHHHHHHHhh-----------------
Q 047286 540 I-IK-------------------CTNFIASLPQGSDLN-VGERGLQLSGGLKQRIARTRARNY----------------- 581 (632)
Q Consensus 540 ~-~~-------------------~~~~i~~lp~g~dt~-vge~G~~LSgGQrQRiaiARA~~~----------------- 581 (632)
+ .+ +.+.+..+ |++.. ......+||||||||++||||+..
T Consensus 110 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 110 VLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187 (262)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 0 00 11222222 34444 455677899999999999999654
Q ss_pred -------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+++++++.
T Consensus 188 ~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 78899999886 6999999999999999999999875
No 88
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=2.5e-19 Score=179.23 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=82.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc--HHHH----------------------H-----------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI--YSWI----------------------I----------- 540 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~--~~~~----------------------~----------- 540 (632)
++++||+||||||||||+++|.|+++|++ +. .... +
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence 35899999999999999999999988743 00 0000 0
Q ss_pred ----HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 541 ----IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 541 ----~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 121 ~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 121 SEIEEMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp HHHHHHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 0111222222 44444455667899999999999999654
Q ss_pred -hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 199 iiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 678999999876 99999999999999999999975
No 89
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.78 E-value=3.4e-19 Score=175.02 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=80.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH-------HH-------------------H--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS-------WI-------------------I-- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~-------~~-------------------~-- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + ... .. +
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 344446899999999999999999999988743 1 000 00 0
Q ss_pred -------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 183 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0111223322 34444455667899999999999999544
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecCh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRH 611 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h 611 (632)
+++||.++.++.||+|++|++|+|++.|+.
T Consensus 184 ~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 184 LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 788999998888999999999999999873
No 90
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.78 E-value=2.7e-19 Score=179.48 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=82.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHH-HH---------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSW-II--------------------------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~-~~--------------------------- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .... ..
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 108 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI 108 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHh
Confidence 444456899999999999999999999988743 1 0000 00
Q ss_pred -----------------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 541 -----------------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 541 -----------------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~ 186 (257)
T 1g6h_A 109 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186 (257)
T ss_dssp STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred hhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 0011222222 34444455677899999999999999654
Q ss_pred --------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHH
Q 047286 582 --------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDA 613 (632)
Q Consensus 582 --------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~e 613 (632)
+++||+++.+. .||+|++|++|+|++.|++++
T Consensus 187 ~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 67899999875 699999999999999999999
No 91
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.77 E-value=2.7e-19 Score=186.15 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=87.1
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH--------------------H---------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI--------------------I--------- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~--------------------~--------- 540 (632)
|+-+++++|+||||||||||+++|.|+++|++ + ..... +
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 33345899999999999999999999998743 0 00000 0
Q ss_pred ---HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 541 ---IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 541 ---~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 103 ~~~~~v~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 103 KDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp CCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0122333332 34444445567899999999999999544
Q ss_pred -hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 181 ii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp EEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 6789998865 5799999999999999999999998644434
No 92
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.77 E-value=2.8e-19 Score=186.65 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=86.8
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc------H-HHH---------------------H----
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI------Y-SWI---------------------I---- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~------~-~~~---------------------~---- 540 (632)
|+-++++||+||||||||||+++|.|+++|++ +. . ... +
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 33345899999999999999999999988743 00 0 000 0
Q ss_pred -----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 541 -----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 541 -----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0122233332 34433445567899999999999999554
Q ss_pred ---------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 186 l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 236 (353)
T 1oxx_K 186 VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236 (353)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 6789999876 4699999999999999999999997644444
No 93
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=1.7e-19 Score=199.35 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=118.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC-CC-CCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG-KQ-NASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~-~~-~~~~~~~ 160 (632)
++|+|++||+++|+||||||||||+++|.|+....... +...++|++|++..+ ..++ ++++... .. ....+.+
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv--~~~~~~~~~~~~~~~~~~ 382 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV--YELLSKIDASKLNSNFYK 382 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH--HHHHHHHHHHHHTCHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH--HHHHHhhhccCCCHHHHH
Confidence 34456899999999999999999999999764322211 245799999998643 2333 2243321 00 0124456
Q ss_pred HHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh--CCceEEEEecCc
Q 047286 161 RPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL 217 (632)
Q Consensus 161 ~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~ 217 (632)
.++++..++. +.+..||+|.++++ +|++||+.++..+.+.|+++. .+.|+|+||||+
T Consensus 383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6667766654 34678999999888 399999999999999999985 388999999999
Q ss_pred hHHhh-cCeEEEEeC--CeEEEecChhHHhc
Q 047286 218 ITIRN-ADCIIMVSK--GKIVEKGTHDELIE 245 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~--G~i~~~g~~~el~~ 245 (632)
+.+.. ||||++|++ |+++..|+++++..
T Consensus 463 ~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 98865 999999986 78888999888753
No 94
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.77 E-value=4.6e-19 Score=186.21 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=87.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------H-HHH---------------------H--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------Y-SWI---------------------I-- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~-~~~---------------------~-- 540 (632)
+|+-+++++|+||||||||||+++|.|+++|++ +. . ... +
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 344446899999999999999999999987743 00 0 000 0
Q ss_pred -------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 0112223222 34444445567899999999999999654
Q ss_pred -----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 183 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 235 (372)
T 1g29_1 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (372)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHH
Confidence 7889998877 4699999999999999999999998644444
No 95
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=2.8e-19 Score=199.71 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC-CC-CCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG-KQ-NASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~-~~-~~~~~~~ 160 (632)
++++|++||+++|+||||||||||+++|.|+....... ++.+++|++|++..+ ..++.+ ++... .. ....+.+
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e--~~~~~~~~~~~~~~~~ 452 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSKLNSNFYK 452 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHH--HHHHHHHHHHHCHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHH--HHHhhhccCCCHHHHH
Confidence 34457999999999999999999999999764332222 246799999998543 234432 44322 00 0123456
Q ss_pred HHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCc
Q 047286 161 RPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL 217 (632)
Q Consensus 161 ~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~ 217 (632)
.++++..++. ..+.+||+|.+++++ |++||+.++..+.+.|+++. .+.|+|+||||+
T Consensus 453 ~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 453 TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp HHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 7777777764 346789999998883 99999999999999999984 478999999999
Q ss_pred hHHhh-cCeEEEEeC--CeEEEecChhHHhc
Q 047286 218 ITIRN-ADCIIMVSK--GKIVEKGTHDELIE 245 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~--G~i~~~g~~~el~~ 245 (632)
..+.. ||||++|++ |++...|+++++..
T Consensus 533 ~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 98865 999999986 88888999888754
No 96
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.76 E-value=6.8e-21 Score=194.18 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=132.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CC----------------------CcEEEEeeCCCEEEEEcCC
Q 047286 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINP--YD----------------------NRFLQHVPSGTTVALVGQS 102 (632)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~--~~----------------------~~~~~~i~~Ge~~~ivG~s 102 (632)
.++.+++..+..++++.+|++|+.++++.+++... .. ..+||+|++|++++|+|||
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGps 135 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPP 135 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcChhhhccceEEecCCCEEEEECCC
Confidence 45667788899999999999999999976432110 00 0168899999999999999
Q ss_pred CchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHc---cchhhHhhCCcc
Q 047286 103 GSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLA---NAEKSIDKLPLG 179 (632)
Q Consensus 103 GsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~l~~~i~~l~~g 179 (632)
|||||||+++|.++. . -+-++|++|++.+|.+++.++ |+.++. +.++ .+.+.++.. +++ ...||+|
T Consensus 136 GsGKSTLl~lL~gl~---~---G~I~~~v~q~~~lf~~ti~~~-ni~~~~-~~~~-~~~~~i~~~L~~gld--g~~LSgG 204 (305)
T 2v9p_A 136 NTGKSMLCNSLIHFL---G---GSVLSFANHKSHFWLASLADT-RAALVD-DATH-ACWRYFDTYLRNALD--GYPVSID 204 (305)
T ss_dssp SSSHHHHHHHHHHHH---T---CEEECGGGTTSGGGGGGGTTC-SCEEEE-EECH-HHHHHHHHTTTGGGG--TCCEECC
T ss_pred CCcHHHHHHHHhhhc---C---ceEEEEecCccccccccHHHH-hhccCc-cccH-HHHHHHHHHhHccCC--ccCcCHH
Confidence 999999999998553 1 123678999999998887653 676652 2232 344444441 222 4578888
Q ss_pred cccccc-----------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 180 LDTVVA-----------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 180 ~~~~v~-----------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
++++ + |++||+.+++.+.. +||++..++.||+| +|++|++++.|+++++ +
T Consensus 205 qkQR-ARAll~~p~iLlTs~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~ 265 (305)
T 2v9p_A 205 RKHK-AAVQIKAPPLLVTSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----K 265 (305)
T ss_dssp CSSC-CCCEECCCCEEEEESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----H
T ss_pred HHHH-HHHHhCCCCEEEECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----H
Confidence 8776 4 99999999888752 29999988889999 9999999999999998 4
Q ss_pred cHHHHHHH
Q 047286 249 GAYSQLVR 256 (632)
Q Consensus 249 ~~~~~~~~ 256 (632)
+.|.+++.
T Consensus 266 ~~y~~l~~ 273 (305)
T 2v9p_A 266 SFFVRLWG 273 (305)
T ss_dssp HHHHHSTT
T ss_pred HHHHHHHH
Confidence 56666654
No 97
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=1.3e-18 Score=173.75 Aligned_cols=121 Identities=22% Similarity=0.171 Sum_probs=88.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------------------cHHH-------------------HH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------------------IYSW-------------------II 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------------------~~~~-------------------~~ 540 (632)
+|.-++++||+||||||||||+++|.|+++|++. .... ..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 106 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHH
Confidence 4444568999999999999999999999887430 0000 00
Q ss_pred HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------------hc
Q 047286 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------------CG 583 (632)
Q Consensus 541 ~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~ 583 (632)
..+.+.+..+ |++........+||||||||++||||+.. ++
T Consensus 107 ~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 107 QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1122333333 45444556677999999999999999654 67
Q ss_pred cccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 584 CGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 584 iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
+||.++.+ +.||+|++|++|+ ++.|+++++++. ..+.+.+
T Consensus 185 vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~--~~~~~~~ 225 (253)
T 2nq2_C 185 TTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS--ENLTALF 225 (253)
T ss_dssp EESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH--HHHHHHH
T ss_pred EecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc--HHHHHHh
Confidence 89999988 5799999999999 999999999863 3344443
No 98
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.75 E-value=7.3e-19 Score=177.21 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHHHHhh------------------------------------hccccchhhhhc--CCEEEEEeCCeE
Q 047286 564 QLSGGLKQRIARTRARNY------------------------------------CGCGSPPYHYKN--ADITSVVKNGVI 605 (632)
Q Consensus 564 ~LSgGQrQRiaiARA~~~------------------------------------~~iahrl~~~~~--aD~I~vl~~G~i 605 (632)
+||||||||++||||+.. +++||.+..+.. ||+|++|++|+|
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 599999999999999655 678999998875 899999999999
Q ss_pred eeecChHHHhc
Q 047286 606 AEKGRHDALMK 616 (632)
Q Consensus 606 ve~G~h~eL~~ 616 (632)
++.|+++++..
T Consensus 244 ~~~g~~~~~~~ 254 (267)
T 2zu0_C 244 VKSGDFTLVKQ 254 (267)
T ss_dssp EEEECTTHHHH
T ss_pred EEEcCHHHHhh
Confidence 99999998754
No 99
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.7e-18 Score=193.03 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=121.4
Q ss_pred EEEEeeCC-----CEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC--CCCC
Q 047286 86 FLQHVPSG-----TTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG--KQNA 155 (632)
Q Consensus 86 ~~~~i~~G-----e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~--~~~~ 155 (632)
++|++++| |+++|+||||||||||+++|.|+....... .+..++|++|+.... ..++.+ ++... ....
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e--~~~~~~~~~~~ 443 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFL 443 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHH--HHHHHCSSTTT
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHH--HHHHHhhcccc
Confidence 78988888 889999999999999999999764332111 134699999986533 334433 33211 1122
Q ss_pred CHHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEE
Q 047286 156 SDEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVI 212 (632)
Q Consensus 156 ~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tvii 212 (632)
..+...++++..++. ..+.+||+|.+++++ |++||+.++..+.+.|+++. .+.|+|+
T Consensus 444 ~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 444 NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345566777777754 446789999998883 99999999999999999974 4899999
Q ss_pred EecCchHHhh-cCeEEEEeC--CeEEEecChhHHhcC
Q 047286 213 VANCLITIRN-ADCIIMVSK--GKIVEKGTHDELIED 246 (632)
Q Consensus 213 itH~~~~~~~-aD~i~vl~~--G~i~~~g~~~el~~~ 246 (632)
||||++.+.. ||||++|++ |+++..|++++++..
T Consensus 524 vtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 524 VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999998865 999999996 999999999998753
No 100
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.74 E-value=2e-18 Score=172.37 Aligned_cols=126 Identities=19% Similarity=0.111 Sum_probs=79.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcC--CChhh------------hcHHHH-----------------------HH--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERF--HNPEQ------------VIYSWI-----------------------II-- 541 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~--y~~~~------------~~~~~~-----------------------~~-- 541 (632)
+|.-++++||+||||||||||+++|.|+ +.|++ ...... +.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 3444568999999999999999999998 66632 000000 00
Q ss_pred ----------------HHHHHHhcCCCccCccccc-CCCC-CChHHHHHHHHHHHHhh----------------------
Q 047286 542 ----------------KCTNFIASLPQGSDLNVGE-RGLQ-LSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 542 ----------------~~~~~i~~lp~g~dt~vge-~G~~-LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+.+..+ |+++...+ ...+ ||||||||++||||+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l 182 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 001111111 44322222 2345 99999999999999655
Q ss_pred --------------hccccchhhhhc--CCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 582 --------------CGCGSPPYHYKN--ADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 582 --------------~~iahrl~~~~~--aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
+++||+++.+.. ||+|++|++|+|++.|+++.......-.|..+.+.
T Consensus 183 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (250)
T 2d2e_A 183 ARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWLKEK 245 (250)
T ss_dssp HHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 788999998876 59999999999999999983322101226665543
No 101
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.74 E-value=2.3e-18 Score=173.52 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=83.6
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hcHHHH-------------------H-HH----------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VIYSWI-------------------I-IK---------- 542 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~~~~-------------------~-~~---------- 542 (632)
|.-++++||+||||||||||+++|.|+++|++ +..... + .+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 33345899999999999999999999998753 110000 0 00
Q ss_pred -------HHHHHhcCCCccC--cccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 543 -------CTNFIASLPQGSD--LNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 543 -------~~~~i~~lp~g~d--t~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
+.+.+..+ |++ ........+||||||||++||||+..
T Consensus 110 ~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp TSCSHHHHHHHHHHT--TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc--CcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 11111111 333 33344556899999999999999654
Q ss_pred ----hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 188 g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 188 GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 688999999875 999999999999999999999865
No 102
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.74 E-value=1e-18 Score=174.03 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=85.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------h---cHHHH----------------------H-------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------V---IYSWI----------------------I------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~---~~~~~----------------------~------- 540 (632)
+|.-++++||+||||||||||+++|.|+++|+. + ..... +
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 101 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK 101 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC
Confidence 455556899999999999999999999987631 0 00000 0
Q ss_pred ---HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 541 ---IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 541 ---~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 102 TRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp TCHHHHHHHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 0011222222 44444555677899999999999999543
Q ss_pred -------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.++.+ +.||+|++|++|++++.|+++++++
T Consensus 180 ~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7889999988 6799999999999999999999986
No 103
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=7.4e-19 Score=194.66 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=91.8
Q ss_pred EEE-EeeCCCEEEEEcCCCchHHHHHHH--HHhCCC----------CCc----HHhhcceEEEcccCccccccccccccc
Q 047286 86 FLQ-HVPSGTTVALVGQSGSGKSTVINL--VESFRF----------YAP----EAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 86 ~~~-~i~~Ge~~~ivG~sGsGKSTLl~l--l~~~~~----------~~~----~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
+++ .+++|++++|+||||||||||+++ +.|+.. .+. ...++.+||++|++... ..+... ..
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~-~~l~~~-~~ 108 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE-GKLFIL-DA 108 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT-TSEEEE-EC
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc-CcEEEE-ec
Confidence 889 999999999999999999999998 444321 111 12346799999986521 111110 00
Q ss_pred ccCCCC----CCHHHHHHHHHHccchhhHhhCCcccccccc----c-----CCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 149 PYGKQN----ASDEHIRPAVQLANAEKSIDKLPLGLDTVVA----T-----NAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 149 ~~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~----t-----s~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
..... ...-.+.+ .++.....++.|..+++. | +++|+..++.+.+.++.++ .+.|+|++|
T Consensus 109 -~~~~~~~~~l~~~~l~~-----~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 109 -SPDPEGQEVVGGFDLSA-----LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTT 182 (525)
T ss_dssp -CCCSSCCSCCSSHHHHH-----HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred -CcccchhhhhcccCHHH-----HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 00000 00011111 123345566666665553 2 3679999999999999885 488999999
Q ss_pred cCchHH---------hh-cCeEEEEeCCeE
Q 047286 215 NCLITI---------RN-ADCIIMVSKGKI 234 (632)
Q Consensus 215 H~~~~~---------~~-aD~i~vl~~G~i 234 (632)
|+++.+ +. ||+|++|++|++
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred cCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 999873 55 999999999653
No 104
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.74 E-value=5.1e-18 Score=193.39 Aligned_cols=91 Identities=24% Similarity=0.286 Sum_probs=75.6
Q ss_pred HHHHHHHHccc-----hhhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANA-----EKSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l-----~~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
+..+.+...++ ++...+||+|+++++ +|++||+.+++.+++.|+++. ++.|+|+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34455555554 345788999998766 399999999999999999985 4789999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCCc
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~~ 249 (632)
|||+++.+..||+|++| ++|+|+++|+++++.+....
T Consensus 602 vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 602 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred EeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 99999988889999999 89999999999999765443
No 105
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=6.4e-18 Score=169.54 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=90.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------HH--------------HHH-------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------YS--------------WII------- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~~--------------~~~------- 540 (632)
++-+|. ++++||+||||||||||+++|.|++ |++ +. .. ..+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK 101 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhc
Confidence 344677 8899999999999999999999998 743 10 00 000
Q ss_pred ----HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh---------------------------------h
Q 047286 541 ----IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY---------------------------------C 582 (632)
Q Consensus 541 ----~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~---------------------------------~ 582 (632)
..+.+.+..+ |++ ........+||||||||++||||+.. +
T Consensus 102 ~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tvi 179 (263)
T 2pjz_A 102 GLDRDLFLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGI 179 (263)
T ss_dssp CCCHHHHHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEE
T ss_pred chHHHHHHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEE
Confidence 0123344444 666 66777788999999999999999655 6
Q ss_pred ccccchhhh-hcCC-EEEEEeCCeEeeecChHHHhcc
Q 047286 583 GCGSPPYHY-KNAD-ITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 583 ~iahrl~~~-~~aD-~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++||.++.+ +.|| +|++|++|++++.|+++++.+.
T Consensus 180 ivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 789999887 5799 9999999999999999999853
No 106
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.72 E-value=4.7e-18 Score=187.34 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=114.4
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH---hhcceEEEcccCccc-ccccccccccccCCC---CCCHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA---EQEKIGLVSKEPIFL-FCDFNEGQYIPYGKQ---NASDEH 159 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~---~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~~~---~~~~~~ 159 (632)
+++|++||+++|+||||||||||+++|.|+....... ....++|++|++... ..++.+ |+.+... ....+.
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~--~l~~~~~~~~~~~~~~ 365 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--YLENASKDALSTSSWF 365 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHH--HHHHHCSSTTCTTSHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHH--HHHHhhhhccchhHHH
Confidence 4568999999999999999999999999654332221 245799999986532 233333 3332111 122344
Q ss_pred HHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecC
Q 047286 160 IRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANC 216 (632)
Q Consensus 160 ~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~ 216 (632)
+.++++..++. ..+.+||+|.+++++ |++||+.++..+++.|+++. .+.|+|+||||
T Consensus 366 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56666666654 457889999998883 99999999999999999985 37899999999
Q ss_pred chHHhh-cCeEEEEeC--CeEEEecChhHHh
Q 047286 217 LITIRN-ADCIIMVSK--GKIVEKGTHDELI 244 (632)
Q Consensus 217 ~~~~~~-aD~i~vl~~--G~i~~~g~~~el~ 244 (632)
++.+.. ||||++|++ |.+...+++.++.
T Consensus 446 l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 446 LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 998875 999999986 5566666665543
No 107
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=1.1e-17 Score=169.27 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=80.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHHHH-----------------HHHHH-------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWIII-----------------KCTNF------- 546 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~~~-----------------~~~~~------- 546 (632)
++++||+||||||||||+++|.|+++|++ +. ...... .+.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~ 126 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFK 126 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC--
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhh
Confidence 35899999999999999999999988743 11 000000 01111
Q ss_pred -------------------HhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 547 -------------------IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 547 -------------------i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
+..+ |++........+||||||||++||||++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 204 (279)
T 2ihy_A 127 SIGVYQDIDDEIRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSIL 204 (279)
T ss_dssp -------CCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 1111 33333445567899999999999999543
Q ss_pred ---------h---ccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---------C---GCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---------~---~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+ ++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 205 ~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 205 DSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp HHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH
T ss_pred HHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 2 469999987 56999999999999999999999864
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=6.7e-17 Score=186.50 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=76.6
Q ss_pred HHHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
+..++++.+++. +....||+|.++++ +|+|||+.+++.+++.|+++. ++.|+|+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 345566666653 34678999988776 399999999999999999985 5899999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCC
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~ 248 (632)
|||+++.++.||+|++| ++|+|+++|+++++.+.+.
T Consensus 864 I~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 864 IEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred EeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 99999999889999999 8999999999999988753
No 109
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=3e-17 Score=189.55 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=66.3
Q ss_pred HHHHHHHHHHccchh------hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 047286 157 DEHIRPAVQLANAEK------SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIV 213 (632)
Q Consensus 157 ~~~~~~~~~~~~l~~------~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviii 213 (632)
.+++++.++..++.. .+..||+|+++++ +|++||+.+...+.+.|+++ +.|+|+|
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiI 954 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIII 954 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEE
Confidence 456778888888753 2568999999888 39999999999999988775 5799999
Q ss_pred ecCchHHhh-cCeEEEEeCCeEEEecC
Q 047286 214 ANCLITIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 214 tH~~~~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
||+++.+.. ||++++|++|+++..|+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999998864 99999999999987764
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.60 E-value=1.6e-15 Score=173.76 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=74.8
Q ss_pred HHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEE
Q 047286 160 IRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIV 213 (632)
Q Consensus 160 ~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviii 213 (632)
..++++..++. +.+..||+|.++++ +|+|||+.+.+.+++.|+++. ++.|+|+|
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566666654 35778999987766 389999999999999999985 58899999
Q ss_pred ecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCC
Q 047286 214 ANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~ 248 (632)
||+++.+..||+|++| ++|+|++.|+++++...+.
T Consensus 905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 9999998889999999 7999999999999987543
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.59 E-value=3e-15 Score=171.46 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=74.5
Q ss_pred HHHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
++.++++.+++. +.+..||+|.++++ +|++||+...+.+.+.|+++. ++.|+|+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345566666653 45678999987665 389999999999999999985 5889999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCC
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~ 247 (632)
|||+++.+..||+|++| ++|+|++.|+++++...+
T Consensus 789 isHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 789 VEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp ECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99999999779999999 799999999999998653
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.58 E-value=4.5e-15 Score=170.74 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=74.1
Q ss_pred HHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 161 RPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 161 ~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
.++++..++. +.+..||+|.++++ +|++||+.+.+.+++.|+++. ++.|+|+||
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4566666654 34678999987766 389999999999999999985 588999999
Q ss_pred cCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCC
Q 047286 215 NCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 215 H~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~ 248 (632)
|+++.++.||+|++| ++|+|++.|+++++...+.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTT
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCH
Confidence 999998889999999 6899999999999987643
No 113
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.56 E-value=9.4e-16 Score=148.89 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=70.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h--------------------cHHHHH-----------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V--------------------IYSWII----------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~--------------------~~~~~~----------- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .....+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 110 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV 110 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCch
Confidence 344445899999999999999999999988743 1 000000
Q ss_pred --HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------h
Q 047286 541 --IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------C 582 (632)
Q Consensus 541 --~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~ 582 (632)
..+.+.+..+ |++.. .....+||||||||++||||+.. +
T Consensus 111 ~~~~~~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 111 NKNEIMDALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp CHHHHHHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0122333333 56665 67778999999999999999554 6
Q ss_pred ccccchhhhhcCCEEEEEeCCeEe
Q 047286 583 GCGSPPYHYKNADITSVVKNGVIA 606 (632)
Q Consensus 583 ~iahrl~~~~~aD~I~vl~~G~iv 606 (632)
++||.+..+..++..+|+.+|+|-
T Consensus 188 ivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 188 ISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp EEESSCCTTSSEEEEGGGGBC---
T ss_pred EEeCCHHHHHHhCCEEEEeCCccc
Confidence 789999998875555557777764
No 114
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.54 E-value=4.5e-16 Score=151.03 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=89.5
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----------CCc-HHhhcceEEEcccCcccccccccccccc-----cC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRF----------YAP-EAEQEKIGLVSKEPIFLFCDFNEGQYIP-----YG 151 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----------~~~-~~~r~~i~~v~Q~~~~~~~~~~~~~~i~-----~~ 151 (632)
.+|++|++++|+||||||||||+++|.|+.. ..+ ...++.++|++|++..|. .+...+++. ++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ-QLIDQGELLEWAEIHG 93 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHH-HHHHTTCEEEEEEEGG
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHH-HHHhcCCceeehhhcC
Confidence 5799999999999999999999999986531 011 123567999999986543 222111221 01
Q ss_pred --C-CCCCHHHHHHH----------HHHccchhhHhhCCccccccc----------ccCCC----CHHHHHHHHHHHHHH
Q 047286 152 --K-QNASDEHIRPA----------VQLANAEKSIDKLPLGLDTVV----------ATNAV----DAQSERIVQAAMVKL 204 (632)
Q Consensus 152 --~-~~~~~~~~~~~----------~~~~~l~~~i~~l~~g~~~~v----------~ts~L----D~~~~~~i~~~l~~~ 204 (632)
. .....+++++. ++..++.+....+|..+...+ .++++ |+..++.+++.++++
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l 173 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL 173 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 0 01122333332 334455555666776554322 25665 788999999999888
Q ss_pred h--CCceEEEEecCchHHhh-cCeEEEEe
Q 047286 205 V--TNQTVVIVANCLITIRN-ADCIIMVS 230 (632)
Q Consensus 205 ~--~~~tviiitH~~~~~~~-aD~i~vl~ 230 (632)
. .+.|++++||+++.+.. ||+|++|.
T Consensus 174 ~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 174 AAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 5 36899999999998865 99999985
No 115
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.7e-17 Score=173.35 Aligned_cols=154 Identities=15% Similarity=0.072 Sum_probs=100.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH--------HhhcceEEEcccCcccc--cccccccccccCCCC-
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE--------AEQEKIGLVSKEPIFLF--CDFNEGQYIPYGKQN- 154 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~--------~~r~~i~~v~Q~~~~~~--~~~~~~~~i~~~~~~- 154 (632)
++|++++|++++|+||||||||||+|+|+|+...... ..++.++|+||++.+|. ..++..+|+ ++...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~ 209 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLT 209 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCB
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccccc
Confidence 7788999999999999999999999999865311000 13567999999985432 112222244 33210
Q ss_pred ---CCHHHHHHHHHHccchhh--HhhCCccccccc------------------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 155 ---ASDEHIRPAVQLANAEKS--IDKLPLGLDTVV------------------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 155 ---~~~~~~~~~~~~~~l~~~--i~~l~~g~~~~v------------------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
...+++.++++..++.+. ..+|++|+.+++ +|++||+. .+.+.+.++++
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~- 287 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL- 287 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT-
T ss_pred cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh-
Confidence 011122223333333322 334555544322 48999999 66666666654
Q ss_pred CCceEEEEecCch------HHh-hcCe-----EEEEe-CCeEEEecChhHHh
Q 047286 206 TNQTVVIVANCLI------TIR-NADC-----IIMVS-KGKIVEKGTHDELI 244 (632)
Q Consensus 206 ~~~tviiitH~~~------~~~-~aD~-----i~vl~-~G~i~~~g~~~el~ 244 (632)
+.|+|+|+|+.. .+. .||+ |++|+ +|+++ .|+++++.
T Consensus 288 -~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 288 -NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp -TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred -CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 678999999877 444 5999 99999 99999 99998874
No 116
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.47 E-value=4.7e-14 Score=151.65 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=49.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEE----eCCeEEEec
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV----SKGKIVEKG 238 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl----~~G~i~~~g 238 (632)
|++||+.+.+.+.+.|+++.++.|+|+|||+++.+..||++++| ++|+++...
T Consensus 325 t~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 325 DAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEEE
Confidence 89999999999999999998789999999999888889999999 999987653
No 117
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.46 E-value=9.2e-16 Score=143.57 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=58.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh---h------------hc----HHHH---H---------------------H--
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE---Q------------VI----YSWI---I---------------------I-- 541 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~---~------------~~----~~~~---~---------------------~-- 541 (632)
+++|||+||||||||+++|.|+|+|+ . +. ..+. + .
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~a 83 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEGN 83 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhhh
Confidence 68999999999999999999998875 1 10 0111 0 1
Q ss_pred HHHHHHhc-CCCccCcccccCCCCCChHHHHHHHHHHHHhh
Q 047286 542 KCTNFIAS-LPQGSDLNVGERGLQLSGGLKQRIARTRARNY 581 (632)
Q Consensus 542 ~~~~~i~~-lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~ 581 (632)
++++|+.. +| ||||.|+|+ |||||||||+||||+++
T Consensus 84 ~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~ 120 (171)
T 2f1r_A 84 DLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp CHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGG
T ss_pred CHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccC
Confidence 56689999 99 999999995 99999999999999875
No 118
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.41 E-value=6.9e-13 Score=139.65 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=56.3
Q ss_pred hhHhhCCccccccc-----------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeE
Q 047286 171 KSIDKLPLGLDTVV-----------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCI 226 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-----------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i 226 (632)
..+..||+|+++++ +|++||+.+.+.+.+.|+++. .+.|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 34557888887655 389999999999999999985 478999999999987789999
Q ss_pred EEEeCCeEEE
Q 047286 227 IMVSKGKIVE 236 (632)
Q Consensus 227 ~vl~~G~i~~ 236 (632)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.37 E-value=1.4e-14 Score=155.61 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=101.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------------cHHhhcceEEEcccCccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
+ |++.+|++++|+||||||||||+++|.+....+ +..+++.++|++|++......+
T Consensus 151 v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~ 229 (438)
T 2dpy_A 151 L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRM 229 (438)
T ss_dssp H-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHH
T ss_pred e-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHH
Confidence 7 899999999999999999999999997542111 1124567899998532112222
Q ss_pred ccccccccCCCCCCHHHHHHHH--HHccchhhHhhCCcccccccc--------cCCCCHHHHHHHHHHHHHHhC-----C
Q 047286 143 NEGQYIPYGKQNASDEHIRPAV--QLANAEKSIDKLPLGLDTVVA--------TNAVDAQSERIVQAAMVKLVT-----N 207 (632)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~--~~~~l~~~i~~l~~g~~~~v~--------ts~LD~~~~~~i~~~l~~~~~-----~ 207 (632)
+..+|+.+.. ++...- +...+-+.+.+++.|+ ++++ |+|||+.+...+.+.+.++.+ +
T Consensus 230 ~v~~~~~~~a------e~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~G 302 (438)
T 2dpy_A 230 QGAAYATRIA------EDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGG 302 (438)
T ss_dssp HHHHHHHHHH------HHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSC
T ss_pred HHHHHHHHHH------HHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCC
Confidence 2211222110 000000 0001112345555565 3332 899999999999999988754 4
Q ss_pred c-----eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 208 Q-----TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 208 ~-----tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+ |++++|||++ ...||++++|.+|+|+.++++.++..
T Consensus 303 siT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 303 SITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp EEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred cccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 3 8999999999 66799999999999999999988764
No 120
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.36 E-value=2.3e-14 Score=134.47 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV 164 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (632)
+||++++||+++|+||||||||||++++.+... ...+.+ .++++|++.... +.. ...+......
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~---~g~~~~~~~~~~--~~~----------~~~~~~~~~~ 66 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFC---RGLMSDDENDQT--VTG----------AAFDVLHYIV 66 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHH---HHHHCSSTTCGG--GHH----------HHHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHH---HHHhcCcccchh--hHH----------HHHHHHHHHH
Confidence 799999999999999999999999997641110 011112 255666643110 000 0000000000
Q ss_pred ---HHccch---hhHhhCCccccccc-----------------ccCCCCHH----------------HHHHHHHHHHHHh
Q 047286 165 ---QLANAE---KSIDKLPLGLDTVV-----------------ATNAVDAQ----------------SERIVQAAMVKLV 205 (632)
Q Consensus 165 ---~~~~l~---~~i~~l~~g~~~~v-----------------~ts~LD~~----------------~~~~i~~~l~~~~ 205 (632)
...+.. +.....+.|.++++ +|++||+. ..+.+.+.++++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~ 146 (171)
T 4gp7_A 67 SKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ 146 (171)
T ss_dssp HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH
Confidence 011110 11111233333333 38999999 4477888877664
Q ss_pred -CCceEEEEecCchHHhhcCeE
Q 047286 206 -TNQTVVIVANCLITIRNADCI 226 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~aD~i 226 (632)
+|.|+|++||+++.+..++++
T Consensus 147 ~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 147 REGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHTCSEEEEECSHHHHHHEEEE
T ss_pred hcCCcEEEEeCCHHHhhhhhhc
Confidence 488999999999998877664
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.31 E-value=3.7e-13 Score=130.13 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=67.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCccccccccccccc-ccC-----
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYI-PYG----- 151 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i-~~~----- 151 (632)
+++|++++|+||||||||||+++|.|+ ..+ +...++.++|++|++. + |+ .+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~-------e--nl~~~~~~~~~ 88 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLN-------E--KIDPYLRPLHD 88 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------------CTTTHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHH-------H--HHHHHHHHHHH
Confidence 588999999999999999999999865 210 1123567999999861 1 22 111
Q ss_pred --CCCCCHHHHHHHHHHccchhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCceEEE
Q 047286 152 --KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVI 212 (632)
Q Consensus 152 --~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~tvii 212 (632)
......+++.++++. + .|++++++ |++ +++.+.+.|+++.++.|+|
T Consensus 89 ~~~~~~~~~~~~~~l~~-g---------lGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii- 153 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-G---------IVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV- 153 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-T---------SEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-
T ss_pred HHHHhccHHHHHHHHHh-C---------CchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-
Confidence 000112334444443 2 28887773 677 7888899998874467888
Q ss_pred EecCchHHhhcCeEEEEeCCe
Q 047286 213 VANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl~~G~ 233 (632)
+||+++.+.. ....++|.
T Consensus 154 vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 154 VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp EEEC---------------CC
T ss_pred EECCHHHHhC---cCCCCCcH
Confidence 9999876543 33345553
No 122
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.27 E-value=2.1e-13 Score=142.19 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=96.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcc---ccccccc---ccccccC--CCCCCH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIF---LFCDFNE---GQYIPYG--KQNASD 157 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~---~~~~~~~---~~~i~~~--~~~~~~ 157 (632)
+ |+|.+|++++|+||||||||||+++|.+... +.. ..+.++.+++.- +...... ...+.+. ......
T Consensus 65 l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~--g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~ 139 (347)
T 2obl_A 65 L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADI--IVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPAL 139 (347)
T ss_dssp H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSE--EEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHH
T ss_pred e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCE--EEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHH
Confidence 6 8999999999999999999999999985532 211 122332222100 0000000 0001110 011112
Q ss_pred HHHHHHHHHccch--------------hhHhhCCcccccccc--------cCCCCHHHHHHHHHHHHHHh--C-Cc----
Q 047286 158 EHIRPAVQLANAE--------------KSIDKLPLGLDTVVA--------TNAVDAQSERIVQAAMVKLV--T-NQ---- 208 (632)
Q Consensus 158 ~~~~~~~~~~~l~--------------~~i~~l~~g~~~~v~--------ts~LD~~~~~~i~~~l~~~~--~-~~---- 208 (632)
+++......+.+. +.+.+++.|+ ++++ |+|+||.....+.+.++++. + |.
T Consensus 140 ~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 140 ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 3333222222111 3456667777 4443 79999999999999999885 3 56
Q ss_pred -eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 -TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 -tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|++++||+++ ...||++++|.+|+|+.+++.+++..
T Consensus 219 ~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 219 YTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp EEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred EEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 8999999998 55699999999999999998888754
No 123
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.6e-13 Score=146.59 Aligned_cols=108 Identities=9% Similarity=-0.107 Sum_probs=73.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhh-c-HH---HHHH------------------HHHHHH--hcC---C------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQV-I-YS---WIII------------------KCTNFI--ASL---P------ 551 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-~-~~---~~~~------------------~~~~~i--~~l---p------ 551 (632)
++++|+||||||||||+++|+|++.|++. . .. .... ...+.+ ... +
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~ 218 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNK 218 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCB
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcchHHHH
Confidence 35699999999999999999999987654 2 00 0000 000000 000 0
Q ss_pred ------CccCcccccCCCCCChHHHHHHHHHHH--Hhh-------------------------------------hcccc
Q 047286 552 ------QGSDLNVGERGLQLSGGLKQRIARTRA--RNY-------------------------------------CGCGS 586 (632)
Q Consensus 552 ------~g~dt~vge~G~~LSgGQrQRiaiARA--~~~-------------------------------------~~iah 586 (632)
-|++... + ..+||||||||++|||| +.. ++++|
T Consensus 219 ~~ll~~~gl~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth 296 (460)
T 2npi_A 219 QPMVKNFGLERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLC 296 (460)
T ss_dssp CCEECCCCSSSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHhCCCccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEc
Confidence 0111111 1 56899999999999999 432 67788
Q ss_pred chh------hh-hcCCE-----EEEEe-CCeEeeecChHHHhc
Q 047286 587 PPY------HY-KNADI-----TSVVK-NGVIAEKGRHDALMK 616 (632)
Q Consensus 587 rl~------~~-~~aD~-----I~vl~-~G~ive~G~h~eL~~ 616 (632)
... .+ +.||+ |++|+ +|+|+ .|+++++.+
T Consensus 297 ~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 297 SETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred cCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 766 33 56999 99999 99999 999999864
No 124
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.20 E-value=3.5e-13 Score=131.58 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=78.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C---------Cc-HHhhcceEEEcccCcccccccccccccc---
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y---------AP-EAEQEKIGLVSKEPIFLFCDFNEGQYIP--- 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~---------~~-~~~r~~i~~v~Q~~~~~~~~~~~~~~i~--- 149 (632)
.+||++++|++++|+||||||||||+++|.++.. . .+ ...+..++|++|++..|........++.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 94 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhh
Confidence 3999999999999999999999999999986431 0 00 1134678999998865533211111111
Q ss_pred cCCC--CCCHHHHHHHHHHccchhhHhhCCccccccc----------------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 150 YGKQ--NASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v----------------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
+... ....++++++++.....-.-..+++|.++++ .++++|..++..+.+.+.+..
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1100 1124456666655432100012233322211 167889888889998888776
Q ss_pred CCceEEEEecCchHHhhcCeEEEEeC
Q 047286 206 TNQTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
++.| ++| ...+|+|+++++
T Consensus 175 ~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 175 IELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHH---HHT----TSCCSEEEECSS
T ss_pred HHHH---hhc----ccCCCEEEECCC
Confidence 6655 566 456888877654
No 125
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.18 E-value=1.8e-11 Score=128.82 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=41.9
Q ss_pred cCCCCCChHHHHHHHHHHHHh------h------------------------------------hccccchhhhhcCCEE
Q 047286 560 ERGLQLSGGLKQRIARTRARN------Y------------------------------------CGCGSPPYHYKNADIT 597 (632)
Q Consensus 560 e~G~~LSgGQrQRiaiARA~~------~------------------------------------~~iahrl~~~~~aD~I 597 (632)
....+||||||||++||||+. . ++++|.+...+.||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345579999999999999976 2 7889999999999999
Q ss_pred EEEeCCeEee
Q 047286 598 SVVKNGVIAE 607 (632)
Q Consensus 598 ~vl~~G~ive 607 (632)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999986
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.18 E-value=1.2e-11 Score=115.84 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=46.1
Q ss_pred EEEeeEEEEEecCCCChHHHHHh------------hhcCCChhh--hcHHHH-HHHHH-HHHhcCCCccCcccccCCCCC
Q 047286 502 IVFEHTVALVGENGNGKSTVISL------------AERFHNPEQ--VIYSWI-IIKCT-NFIASLPQGSDLNVGERGLQL 565 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~l------------l~r~y~~~~--~~~~~~-~~~~~-~~i~~lp~g~dt~vge~G~~L 565 (632)
+.-++.++|+||||||||||+++ +.++..++. ...... ...+. .....+..|+.+.+.. -...
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 84 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA-TNVQ 84 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES-CCCS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC-CCCC
Confidence 44456889999999999999994 444333222 111000 01111 1112234566655543 3456
Q ss_pred ChHHHHHHHHHHHHh
Q 047286 566 SGGLKQRIARTRARN 580 (632)
Q Consensus 566 SgGQrQRiaiARA~~ 580 (632)
|||||||++||||+.
T Consensus 85 s~g~~qrv~iAral~ 99 (171)
T 4gp7_A 85 ESARKPLIEMAKDYH 99 (171)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999943
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.16 E-value=7.1e-12 Score=124.54 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=70.7
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHH--hC-CCC----------CcH---HhhcceEEEcccCcccccccccccccccCC
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVE--SF-RFY----------APE---AEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~--~~-~~~----------~~~---~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
.|++|++++|+||||||||||+++|+ +. ... .+. ...+.+++++|+.... ..+...++.....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKE-GKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHT-TSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhc-CCEEEEEcccccc
Confidence 48999999999999999999999886 33 110 111 1234577777764211 1111111111100
Q ss_pred CCCCHHHHHHHHHHccchhhHh----hCCc-cccccc---ccCCCC-----HHHHHHHHHHHHHHh-CCceEEEEecCch
Q 047286 153 QNASDEHIRPAVQLANAEKSID----KLPL-GLDTVV---ATNAVD-----AQSERIVQAAMVKLV-TNQTVVIVANCLI 218 (632)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~i~----~l~~-g~~~~v---~ts~LD-----~~~~~~i~~~l~~~~-~~~tviiitH~~~ 218 (632)
.. ...+.........+.+... .+.. +-+..+ +|+++| +..++.+.+.++.++ .+.|+|++||++.
T Consensus 105 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 105 GL-PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred cc-ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 00 0000000111111111111 1110 111111 356665 455666888888775 4899999999988
Q ss_pred HH----------hhc-CeEEEEeC
Q 047286 219 TI----------RNA-DCIIMVSK 231 (632)
Q Consensus 219 ~~----------~~a-D~i~vl~~ 231 (632)
.. ..| |+|++|++
T Consensus 184 ~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 184 PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp ---CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCcccccccChhhEeeeEEEEEee
Confidence 76 347 99999964
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.14 E-value=1.4e-11 Score=120.82 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=71.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----------------hcceEEEcccCcccccccccccccccCCC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQ 153 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----------------r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~ 153 (632)
+++|++++|+||||||||||+++|++....++... ..++++++|+..++..++.+ |+.+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 99 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK--HIYVARA 99 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHH--TEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhh--cEEEEec
Confidence 89999999999999999999999976323222111 12344444544333333322 4443322
Q ss_pred CCCHHHHHHHHHHccchhhHh-hC--Cccccccc---ccCCCCHH-------HH-----HHHHHHHHHHh--CCceEEEE
Q 047286 154 NASDEHIRPAVQLANAEKSID-KL--PLGLDTVV---ATNAVDAQ-------SE-----RIVQAAMVKLV--TNQTVVIV 213 (632)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~i~-~l--~~g~~~~v---~ts~LD~~-------~~-----~~i~~~l~~~~--~~~tviii 213 (632)
. ........++. +...+. .+ ..+.+..+ .++.+|+. .+ ..+.+.+.++. .+.|+|++
T Consensus 100 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v 176 (231)
T 4a74_A 100 F-NSNHQMLLVQQ--AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176 (231)
T ss_dssp C-SHHHHHHHHHH--HHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred C-ChHHHHHHHHH--HHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1 11111111111 111111 01 11111111 24555552 21 25666666653 37899999
Q ss_pred ecCch----HHhh-cCeEEEEeCCe
Q 047286 214 ANCLI----TIRN-ADCIIMVSKGK 233 (632)
Q Consensus 214 tH~~~----~~~~-aD~i~vl~~G~ 233 (632)
||... .+.. ||++++|++|+
T Consensus 177 tH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 177 NQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EECC---------CCSEEEEEEECT
T ss_pred eecccCcchhhHhhceEEEEEEecC
Confidence 99554 4665 99999998753
No 129
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.14 E-value=2.9e-11 Score=129.80 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHhh-------------------------------------hccccchhhhhcCCEEEEE----eCC
Q 047286 565 LSGGLKQRIARTRARNY-------------------------------------CGCGSPPYHYKNADITSVV----KNG 603 (632)
Q Consensus 565 LSgGQrQRiaiARA~~~-------------------------------------~~iahrl~~~~~aD~I~vl----~~G 603 (632)
||||||||++||||++. ++|||++..+..||+|++| ++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 89999999999999543 6789999999999999999 999
Q ss_pred eEeeec
Q 047286 604 VIAEKG 609 (632)
Q Consensus 604 ~ive~G 609 (632)
+++...
T Consensus 376 ~~~~~~ 381 (415)
T 4aby_A 376 RTVSHV 381 (415)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 998653
No 130
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.13 E-value=2.4e-11 Score=125.82 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeE--EEEeCCeEE
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCI--IMVSKGKIV 235 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i--~vl~~G~i~ 235 (632)
|++||+..++.+.+.|+++.++.|+|++||+.+....||++ ++|++|...
T Consensus 251 ~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 251 DSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 89999999999999999987678999999998777789987 888888653
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.12 E-value=1.6e-12 Score=122.50 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=42.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh-------hhcHHHHHHHH----------HHHHhcCCCccCcccccCCCCCChHH
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE-------QVIYSWIIIKC----------TNFIASLPQGSDLNVGERGLQLSGGL 569 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~-------~~~~~~~~~~~----------~~~i~~lp~g~dt~vge~G~~LSgGQ 569 (632)
+++|+||+|||||||+++|.+++... +.......... ..++..+....+..++..+.+|||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 57999999999999999999986421 00000000000 00000000000124566677899999
Q ss_pred HHHHHHHHH
Q 047286 570 KQRIARTRA 578 (632)
Q Consensus 570 rQRiaiARA 578 (632)
|||++||||
T Consensus 82 ~qr~~la~a 90 (178)
T 1ye8_A 82 ELAIPILER 90 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999996
No 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.11 E-value=6.4e-12 Score=133.30 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=85.8
Q ss_pred EEEEeeCCC--------------------EEEEEcCCCchHHHHHHHHHhCCCCCc-------HHhhcceEEEcccCccc
Q 047286 86 FLQHVPSGT--------------------TVALVGQSGSGKSTVINLVESFRFYAP-------EAEQEKIGLVSKEPIFL 138 (632)
Q Consensus 86 ~~~~i~~Ge--------------------~~~ivG~sGsGKSTLl~ll~~~~~~~~-------~~~r~~i~~v~Q~~~~~ 138 (632)
+++++++|+ +++|+||||||||||+|+|.|+...+. .... +.++++|++...
T Consensus 42 is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-~~~~v~q~~~~~ 120 (413)
T 1tq4_A 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIP 120 (413)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCT
T ss_pred ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-eeEEeccccccC
Confidence 777888888 999999999999999999986532211 1111 237899986422
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHccchhh--HhhCCcc--ccccc---------------------------ccC
Q 047286 139 FCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKS--IDKLPLG--LDTVV---------------------------ATN 187 (632)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~--i~~l~~g--~~~~v---------------------------~ts 187 (632)
..++.+ +..++... .++.+.++..++.+. ...++.| .++++ +|+
T Consensus 121 ~ltv~D--~~g~~~~~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 121 NVVFWD--LPGIGSTN---FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp TEEEEE--CCCGGGSS---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred CeeehH--hhcccchH---HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 233333 45554322 234556666555431 1126666 44333 389
Q ss_pred CCCHHHHHHHHHHHHHHh------C----CceEEEEecCchH--Hhh-cCeE
Q 047286 188 AVDAQSERIVQAAMVKLV------T----NQTVVIVANCLIT--IRN-ADCI 226 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~------~----~~tviiitH~~~~--~~~-aD~i 226 (632)
+||+.+++.+++.|+++. . ..++++++|.++. ++. ||+|
T Consensus 196 gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999998888763 1 2467778898765 544 7776
No 133
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.10 E-value=1.8e-11 Score=119.22 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------------CcH-HhhcceEEEcccCccccccccc---ccccccCC
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFY------------APE-AEQEKIGLVSKEPIFLFCDFNE---GQYIPYGK 152 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------------~~~-~~r~~i~~v~Q~~~~~~~~~~~---~~~i~~~~ 152 (632)
+.++|++++|+||||||||||+++|.+.... ++. ..+..++|++|++..|...... .+++.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 5789999999999999999999999764321 010 1234689999988655432210 12333221
Q ss_pred C--CCCHHHHHHHHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEe
Q 047286 153 Q--NASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 153 ~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
. ....+++.++++. |.. .+.. ||+.+.+.+.+.+. ++.|++++||+++.++. |+ ++
T Consensus 92 ~~yg~~~~~v~~~l~~------------G~i-llLD--LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~ 149 (219)
T 1s96_A 92 NYYGTSREAIEQVLAT------------GVD-VFLD--IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RG 149 (219)
T ss_dssp EEEEEEHHHHHHHHTT------------TCE-EEEE--CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HT
T ss_pred ccCCCCHHHHHHHHhc------------CCe-EEEE--ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HH
Confidence 1 1123344444332 311 1222 99999999988765 57899999999988765 33 66
Q ss_pred CCeEEEecChhHHh
Q 047286 231 KGKIVEKGTHDELI 244 (632)
Q Consensus 231 ~G~i~~~g~~~el~ 244 (632)
+| .++++++.
T Consensus 150 rG----~~~~e~i~ 159 (219)
T 1s96_A 150 RG----QDSEEVIA 159 (219)
T ss_dssp TS----CSCHHHHH
T ss_pred cC----CCCHHHHH
Confidence 67 56676664
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=3.2e-10 Score=114.06 Aligned_cols=121 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCcccccccccccccccCCCC---CCHHH
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQN---ASDEH 159 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~---~~~~~ 159 (632)
.++|+||||||||||+|+|.|..... ....++.++|++|++.++. .++..+|+.++... ...+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~-~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM-KLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CC-EEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcC-CceEEechhhhhhcccHHHHHH
Confidence 48999999999999999997653221 1123467999999986543 33333366665432 22344
Q ss_pred HHHHHHHccchhhHhhCCcccccccc--------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVVA--------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v~--------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~ 220 (632)
+.+.+..-..+....++++|.+++++ +.+||+.. .+.++.+.+..++|++.|..+.+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEETTGGGS
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEeccccC
Confidence 55555533344567889999988763 68899876 33444444447888888876544
No 135
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.03 E-value=2.4e-10 Score=118.28 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCccCccccc------CCCCCChHHHHHHHHHHHHh----h-----------------------------------hcc
Q 047286 550 LPQGSDLNVGE------RGLQLSGGLKQRIARTRARN----Y-----------------------------------CGC 584 (632)
Q Consensus 550 lp~g~dt~vge------~G~~LSgGQrQRiaiARA~~----~-----------------------------------~~i 584 (632)
++.|+++.++. ...+||||||||++||||+. . +++
T Consensus 199 l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~ 278 (322)
T 1e69_A 199 LDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278 (322)
T ss_dssp -----CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45577665442 34689999999999999863 2 678
Q ss_pred ccchhhhhcCCEE--EEEeCCeE-eeecChHHHhc
Q 047286 585 GSPPYHYKNADIT--SVVKNGVI-AEKGRHDALMK 616 (632)
Q Consensus 585 ahrl~~~~~aD~I--~vl~~G~i-ve~G~h~eL~~ 616 (632)
||++..++.||++ ++|++|+. +...+-++..+
T Consensus 279 tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~~~ 313 (322)
T 1e69_A 279 THNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILE 313 (322)
T ss_dssp CCCTTGGGGCSEEEEEEESSSCEEEEECCC-----
T ss_pred ECCHHHHhhCceEEEEEEeCCEEEEEEEEcchhhh
Confidence 9999888999987 88887754 33444454433
No 136
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.01 E-value=1.9e-12 Score=136.60 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=92.2
Q ss_pred EEEEeeC--CCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCcccccc
Q 047286 86 FLQHVPS--GTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFCD 141 (632)
Q Consensus 86 ~~~~i~~--Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~~ 141 (632)
++++|++ |+.++|+||||||||||+++|.++..... ..+ ..|++++|++..+..+
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~~t 239 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYAVR 239 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHHHh
Confidence 7888999 99999999999999999999985422111 111 3367777776555555
Q ss_pred cccccccccCCCCCCHHHHHHHHHHccchhhHhhCCcc--ccccc------------ccCCCCHHHHHHHHHHHHHHhC-
Q 047286 142 FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLG--LDTVV------------ATNAVDAQSERIVQAAMVKLVT- 206 (632)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g--~~~~v------------~ts~LD~~~~~~i~~~l~~~~~- 206 (632)
..+ |+.++.....................+..++.+ .+..+ .+.++|+..+..+.+.++++.+
T Consensus 240 ~~~--nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 240 HSH--KIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HCS--SEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred ccC--CEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 554 566654322223333332222333334443322 22211 1367899999999999988754
Q ss_pred -CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 207 -NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 207 -~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+.++++++|.-...+.+|++.++++ ++..++.++|.
T Consensus 318 ~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 318 YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 7899999986544455777776654 44556666654
No 137
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.98 E-value=2.7e-10 Score=132.23 Aligned_cols=144 Identities=12% Similarity=0.035 Sum_probs=84.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcce-EEEcccCcccc------cccccccccccCCCCCCHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-GLVSKEPIFLF------CDFNEGQYIPYGKQNASDE 158 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i-~~v~Q~~~~~~------~~~~~~~~i~~~~~~~~~~ 158 (632)
++|++++|++++|+|||||||||++|++..... ..++ .++|++...+. ..+...+++..+.... ..
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~------~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf-~~ 727 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL------MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF-MA 727 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH------HHHHTCCBSEEEEEEECCSEEEEECC---------CHH-HH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH------HHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhh-HH
Confidence 899999999999999999999999998832110 0111 23333321100 0000000111110000 01
Q ss_pred HHHHHHHHccchhhHhhCCccccccc---ccCCCCHHHHHHH-HHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 159 HIRPAVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSERIV-QAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 159 ~~~~~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i-~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
+..+.... +.... .-+-.+ +++|+|+.....+ +..++.+. .+.|+|++||+.+....||++..+++|
T Consensus 728 e~~~~a~i------l~~a~-~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng 800 (934)
T 3thx_A 728 EMLETASI------LRSAT-KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 (934)
T ss_dssp HHHHHHHH------HHHCC-TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEE
T ss_pred HHHHHHHH------HHhcc-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEee
Confidence 11111111 11110 111111 4899999988777 55666664 378999999998888889999999999
Q ss_pred eEEEecChhHH
Q 047286 233 KIVEKGTHDEL 243 (632)
Q Consensus 233 ~i~~~g~~~el 243 (632)
++...++.+++
T Consensus 801 ~v~~~~~~~~l 811 (934)
T 3thx_A 801 HVTALTTEETL 811 (934)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCcE
Confidence 99988877765
No 138
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.97 E-value=3.2e-11 Score=125.05 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=63.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhhcHHHHHHHHHHHHhcCCCccCcccc-cCCCCCChHHHHHHHHHHHHhh---
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVG-ERGLQLSGGLKQRIARTRARNY--- 581 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~~~~~~~~~~~~i~~lp~g~dt~vg-e~G~~LSgGQrQRiaiARA~~~--- 581 (632)
+.++|+||||||||||+++|.|+++|++-... +.+..+ ..+|. +...++ -.| |||+||++||||+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~--i~~~~e--~~~~~-~~~~i~~~~g----gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS--IEDTEE--IVFKH-HKNYTQLFFG----GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE--EESSCC--CCCSS-CSSEEEEECB----TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE--ECCeec--ccccc-chhEEEEEeC----CChhHHHHHHHHhhhCCC
Confidence 36799999999999999999999998651110 000000 01110 111111 001 899999999999543
Q ss_pred --------------------------hccccchhhhhcCCEEEEEeCCeEe
Q 047286 582 --------------------------CGCGSPPYHYKNADITSVVKNGVIA 606 (632)
Q Consensus 582 --------------------------~~iahrl~~~~~aD~I~vl~~G~iv 606 (632)
++++|++++.+.||||++|++|+..
T Consensus 243 ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSA 293 (330)
T ss_dssp EEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGG
T ss_pred EEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcc
Confidence 6779999999999999999988643
No 139
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.97 E-value=5.5e-10 Score=131.34 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=82.5
Q ss_pred EEEEeeC-------CCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceE-EEcccCcccccccccccccccCCCCCCH
Q 047286 86 FLQHVPS-------GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIG-LVSKEPIFLFCDFNEGQYIPYGKQNASD 157 (632)
Q Consensus 86 ~~~~i~~-------Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~-~v~Q~~~~~~~~~~~~~~i~~~~~~~~~ 157 (632)
++|++++ |++++|+||||||||||+|++ |+.. ...++| ||||++. ..++.++..-.++..+...
T Consensus 775 i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~aqiG~~Vpq~~~--~l~v~d~I~~rig~~d~~~ 846 (1022)
T 2o8b_B 775 ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VMAQMGCYVPAEVC--RLTPIDRVFTRLGASDRIM 846 (1022)
T ss_dssp EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HHHTTTCCEESSEE--EECCCSBEEEECC------
T ss_pred eeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HHhheeEEeccCcC--CCCHHHHHHHHcCCHHHHh
Confidence 7888877 899999999999999999998 5421 345677 9999863 2223321111122111000
Q ss_pred HHHHH-HHHHccchhhHhhCCccccccc---ccCCCCHHHH-HHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEE
Q 047286 158 EHIRP-AVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSE-RIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMV 229 (632)
Q Consensus 158 ~~~~~-~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~-~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl 229 (632)
..... ..+..++ ..+..+...-+-.+ +++|+|+... ..+++.++.+. + +.++|++||+.+.+.. +|++.++
T Consensus 847 ~~~stf~~em~~~-a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 847 SGESTFFVELSET-ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp ---CHHHHHHHHH-HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred hchhhhHHHHHHH-HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 00000 0000000 00111111111111 3899999874 55778888775 3 7899999999998875 9998886
Q ss_pred eCCeEE--EecChh
Q 047286 230 SKGKIV--EKGTHD 241 (632)
Q Consensus 230 ~~G~i~--~~g~~~ 241 (632)
+|++. ++|+.+
T Consensus 926 -~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 -LGHMACMVENECE 938 (1022)
T ss_dssp -EEEEEEC------
T ss_pred -cCeEEEEEecCcc
Confidence 58887 445443
No 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.95 E-value=2.5e-10 Score=107.42 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=67.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC-----CC---cH--HhhcceEEEcccCccccccccccc--cccc------CCC--C
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF-----YA---PE--AEQEKIGLVSKEPIFLFCDFNEGQ--YIPY------GKQ--N 154 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~-----~~---~~--~~r~~i~~v~Q~~~~~~~~~~~~~--~i~~------~~~--~ 154 (632)
.++|+||||||||||+++|.+... +. .. ..+++++|++|++. ..++. ...+ +.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-----GKKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-----CCEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-----HHHHHHHhhcCCccccccccccC
Confidence 689999999999999999975421 00 11 34567899999762 11100 0000 000 0
Q ss_pred CC-HHHHH-HHHHHccchhhHhhCCcc--cccccccCCCCHHHHHHHHHHHHHHhCCceEEEEec---CchHHhh-cCeE
Q 047286 155 AS-DEHIR-PAVQLANAEKSIDKLPLG--LDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVAN---CLITIRN-ADCI 226 (632)
Q Consensus 155 ~~-~~~~~-~~~~~~~l~~~i~~l~~g--~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH---~~~~~~~-aD~i 226 (632)
.+ .++.+ ..+..+. .+.+..-|.= +|-.-+|++||+...+.+.+.+.+ .+.|+|+++| +...+.. ||+
T Consensus 77 lSgG~~qr~~la~aa~-~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r- 152 (178)
T 1ye8_A 77 VQYFEELAIPILERAY-REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL- 152 (178)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC-
T ss_pred cCHHHHHHHHHHhhcc-ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc-
Confidence 01 11111 1111100 0001111110 122115899999999999888866 3567888885 6666654 787
Q ss_pred EEEeCCeEEE
Q 047286 227 IMVSKGKIVE 236 (632)
Q Consensus 227 ~vl~~G~i~~ 236 (632)
.+|++++
T Consensus 153 ---~~~~i~~ 159 (178)
T 1ye8_A 153 ---PGAVLIE 159 (178)
T ss_dssp ---TTCEEEE
T ss_pred ---CCcEEEE
Confidence 5566665
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.93 E-value=8.6e-11 Score=114.57 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
-+|.-++++|||||||||||||+++|.|++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345556688999999999999999999998
No 142
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.92 E-value=2.3e-10 Score=113.58 Aligned_cols=145 Identities=10% Similarity=0.163 Sum_probs=76.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhC-CCCCcHHhhcceEEEcccCccccccccccccccc-------CCC-CC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF-RFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY-------GKQ-NA 155 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~-~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~-------~~~-~~ 155 (632)
.+||++++|+++||+||||||||||+++|.+. +.......++.++|++|++ ++..++..+++.+ ..+ ..
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVLTAEQKAKALKGQYNFDHPDAF 94 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCCCHHHHHHHHTTCCCTTSGGGB
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--CccccCHhHhhhhhccCCCCCCcccc
Confidence 38999999999999999999999999999753 2110013467899999996 2323332222211 111 12
Q ss_pred CHHHHHHHHHHc--cchhhHhhCCcccccccc------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH-
Q 047286 156 SDEHIRPAVQLA--NAEKSIDKLPLGLDTVVA------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI- 220 (632)
Q Consensus 156 ~~~~~~~~~~~~--~l~~~i~~l~~g~~~~v~------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~- 220 (632)
+.+++.+.++.. .....+..++.|..+++. .-++|+..+..+. ++ .+.+++++||+...+
T Consensus 95 ~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~----~~-~~~~i~v~th~~~~~~ 169 (245)
T 2jeo_A 95 DNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIR----DM-FHLRLFVDTDSDVRLS 169 (245)
T ss_dssp CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHH----TT-CSEEEEEECCHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHH----Hh-cCeEEEEECCHHHHHH
Confidence 334444554432 122234455666655542 2245554333332 22 378999999974444
Q ss_pred hh-cCeEEEEeCCeEEEecChhHHh
Q 047286 221 RN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 221 ~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+. ++++ ++|+ +.+++.
T Consensus 170 r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 170 RRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp HHHHHHT---C--------CHHHHH
T ss_pred HHHHHHH---HcCC-----CHHHHH
Confidence 43 4444 6664 455554
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.92 E-value=4.4e-11 Score=114.82 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=70.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCC-----------CcHH-hhcceEEE-----------cccCcccccccccccc
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFY-----------APEA-EQEKIGLV-----------SKEPIFLFCDFNEGQY 147 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----------~~~~-~r~~i~~v-----------~Q~~~~~~~~~~~~~~ 147 (632)
++|++++|+||||||||||+++|.+.... .|.. ....+.|. +|++++++.++.. |
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~--n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSG--N 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT--E
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecC--c
Confidence 57999999999999999999999753110 0100 00111122 3444455555544 3
Q ss_pred cccCCCCCCHHHHHHHHHHcc--chhh----Hh-hCCcccccc-c------------ccCCCCHHHHHHHHHHHHHHhCC
Q 047286 148 IPYGKQNASDEHIRPAVQLAN--AEKS----ID-KLPLGLDTV-V------------ATNAVDAQSERIVQAAMVKLVTN 207 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~--l~~~----i~-~l~~g~~~~-v------------~ts~LD~~~~~~i~~~l~~~~~~ 207 (632)
+ ++ .+.++++++++... +.+. .. ........+ + .++++|..+++.+.+.|.+..++
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~ 155 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD 155 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3 33 24666777776421 1110 00 001111111 1 26788888899999888776543
Q ss_pred ceEEEEecCchHHhhcCeEEEEeC
Q 047286 208 QTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 208 ~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
+.++| .. ..+|+|+++++
T Consensus 156 ---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 156 ---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp ---TTGGG--ST-TTCSEEEECSS
T ss_pred ---HHHhh--cc-CCceEEEECCC
Confidence 24456 22 67999988764
No 144
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.91 E-value=2.2e-10 Score=110.86 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=77.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccc---cccccccccCCC-CCCHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCD---FNEGQYIPYGKQ-NASDEHIRPAVQ 165 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~---~~~~~~i~~~~~-~~~~~~~~~~~~ 165 (632)
.++|++++|+||||||||||+++|.+. +.+ .++|++|++.++..+ ..++.++.++.+ ..+.+++.+.++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~--~~~-----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART--LGE-----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQ 75 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH--HGG-----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH--hCC-----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHH
Confidence 578999999999999999999999843 222 599999998765322 222223333322 234566777777
Q ss_pred HccchhhHh----hCCcccc----ccc-----------------ccCC-------CCHHHHHHHHHHHHHH--hCCceEE
Q 047286 166 LANAEKSID----KLPLGLD----TVV-----------------ATNA-------VDAQSERIVQAAMVKL--VTNQTVV 211 (632)
Q Consensus 166 ~~~l~~~i~----~l~~g~~----~~v-----------------~ts~-------LD~~~~~~i~~~l~~~--~~~~tvi 211 (632)
..++.+.+. .++.|.. +++ ++++ ||+..+..+.+.+.+. .++.|++
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 665544332 3334431 111 1455 8888888888888765 2478988
Q ss_pred EEecCc
Q 047286 212 IVANCL 217 (632)
Q Consensus 212 iitH~~ 217 (632)
.++|+.
T Consensus 156 ~~~~~~ 161 (211)
T 3asz_A 156 GVVAQY 161 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 889874
No 145
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.86 E-value=1.4e-10 Score=120.19 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQ 165 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (632)
+++.+++|++++|+||||||||||+++|.+ +++|.. +.+- +...+.+....... .+.+... ..+..+.++.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g--~~~~~~--g~i~-i~~~~e~~~~~~~~--~i~~~~g--gg~~~r~~la 234 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIME--FIPKEE--RIIS-IEDTEEIVFKHHKN--YTQLFFG--GNITSADCLK 234 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGG--GSCTTS--CEEE-EESSCCCCCSSCSS--EEEEECB--TTBCHHHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhC--CCcCCC--cEEE-ECCeeccccccchh--EEEEEeC--CChhHHHHHH
Confidence 456778999999999999999999999984 444431 2222 22211111010111 1111100 0111122222
Q ss_pred HccchhhHhhCCccccccc---ccCCCCHHHHHHHHHHHHHHhCCc-eEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 166 LANAEKSIDKLPLGLDTVV---ATNAVDAQSERIVQAAMVKLVTNQ-TVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 166 ~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i~~~l~~~~~~~-tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
.+-.. -|. -.+ +++ .++.+.++.+..++ |+++++|+.+....|||+++|++|..
T Consensus 235 ~aL~~-----~p~---ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 235 SCLRM-----RPD---RIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHTTS-----CCS---EEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHhhh-----CCC---EEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 22111 111 011 122 23566777776665 79999999997778999999998853
No 146
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.82 E-value=6.6e-10 Score=122.79 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=84.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQL 166 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (632)
+..+++|++++|+||||||||||++.+++..... -.+.+.+++|++.. .+..+ ...++ .+.++ .. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~~~---~l~~~-~~~~g---~~~~~---~~-~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEESRA---QLLRN-AYSWG---MDFEE---ME-R 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSCHH---HHHHH-HHTTS---CCHHH---HH-H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCCHH---HHHHH-HHHcC---CCHHH---HH-h
Confidence 3478999999999999999999999987542211 11225667787631 11110 00111 11111 11 1
Q ss_pred ccc----hhhHhhCCccccccc----------------ccCCCCHH-----HHHHHHHHHHHHh-CCceEEEEecCc---
Q 047286 167 ANA----EKSIDKLPLGLDTVV----------------ATNAVDAQ-----SERIVQAAMVKLV-TNQTVVIVANCL--- 217 (632)
Q Consensus 167 ~~l----~~~i~~l~~g~~~~v----------------~ts~LD~~-----~~~~i~~~l~~~~-~~~tviiitH~~--- 217 (632)
.++ +.....++.|..+++ +|++||+. .++.+.+.++.++ .+.|+|+++|+.
T Consensus 341 ~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~ 420 (525)
T 1tf7_A 341 QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFM 420 (525)
T ss_dssp TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSS
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccccc
Confidence 111 112334555544333 37889988 8888888888875 478999999998
Q ss_pred -------hHHhh-cCeEEEEeCCe
Q 047286 218 -------ITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 218 -------~~~~~-aD~i~vl~~G~ 233 (632)
..+.. ||+|++|++|+
T Consensus 421 ~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 421 GAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CcccccCcccceeeeEEEEEEEEE
Confidence 66654 99999999987
No 147
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.78 E-value=3.3e-10 Score=121.65 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=74.9
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH--------HHH-------------------HH-
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY--------SWI-------------------II- 541 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~--------~~~-------------------~~- 541 (632)
|.-+++++|+||||||||||+++|.|+++|+. +.. ... +.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHH
Confidence 34445889999999999999999999988743 110 000 00
Q ss_pred H---HHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHH--------------------H----h---h---------
Q 047286 542 K---CTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRA--------------------R----N---Y--------- 581 (632)
Q Consensus 542 ~---~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA--------------------~----~---~--------- 581 (632)
+ ..++... .+.+. .+=+...+||+|| ||++|| + + - .
T Consensus 234 ~~~~~ae~~~~--~~~~v~~~ld~l~~lS~g~-qrvslA-l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~t 309 (438)
T 2dpy_A 234 YATRIAEDFRD--RGQHVLLIMDSLTRYAMAQ-REIALA-IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYT 309 (438)
T ss_dssp HHHHHHHHHHT--TTCEEEEEEECHHHHHHHH-HHHHHH-TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHhHHHHHHHH-HHHHHH-hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeE
Confidence 0 0111111 22221 1224567899999 999998 3 0 0 0
Q ss_pred -hccccchhhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||+++ ...||++++|.+|+|+..|+++++..
T Consensus 310 Vlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 310 VLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp EECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred EEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 34578888 78899999999999999999999875
No 148
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.76 E-value=2.6e-09 Score=122.63 Aligned_cols=139 Identities=12% Similarity=0.180 Sum_probs=76.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC------CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|+ ++|++++|+||||||||||+|++.++.. +-|. .+..+++++| + +..+...+++..+...... +
T Consensus 601 isl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa-~~~~i~~~~~---i-~~~~~~~d~l~~~~stf~~-e 673 (800)
T 1wb9_A 601 LNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QKVEIGPIDR---I-FTRVGAADDLASGRSTFMV-E 673 (800)
T ss_dssp EEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCCE---E-EEEEC-----------CHH-H
T ss_pred cccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch-hcccceeHHH---H-HhhCCHHHHHHhhhhhhhH-H
Confidence 7888 8999999999999999999999875321 1111 1233444444 1 1222222244333222111 1
Q ss_pred HHHHHHHccchhhHhhCCccccccc---ccCCCCHHHHHHH-HHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCCe
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSERIV-QAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i-~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
..+.... +... ..-+-.+ +++|+|+.....+ ++.++.+. .+.++|++||+.+....||++..+++|+
T Consensus 674 ~~~~~~i------l~~a-~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 674 MTETANI------LHNA-TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746 (800)
T ss_dssp HHHHHHH------HHHC-CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred HHHHHHH------HHhc-cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence 1221111 1111 0111111 3677777655543 56666664 3789999999998777799888888888
Q ss_pred EEEec
Q 047286 234 IVEKG 238 (632)
Q Consensus 234 i~~~g 238 (632)
+....
T Consensus 747 ~~~~~ 751 (800)
T 1wb9_A 747 LDALE 751 (800)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.76 E-value=1.2e-10 Score=112.52 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=65.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh---h---------hcHHHH----------------HHHHHHHHhcCCCc--cCc
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE---Q---------VIYSWI----------------IIKCTNFIASLPQG--SDL 556 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~---~---------~~~~~~----------------~~~~~~~i~~lp~g--~dt 556 (632)
++||+||||||||||+++|.++++|. . +..... ...+.+++..++.| +++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i~~ 103 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIY 103 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCceec
Confidence 56999999999999999999998752 1 111110 11234566666665 778
Q ss_pred ccccCCCCCChHHHHHHHHH-HHHhh--hccccc----hhhhhcCCEEEEEeC
Q 047286 557 NVGERGLQLSGGLKQRIART-RARNY--CGCGSP----PYHYKNADITSVVKN 602 (632)
Q Consensus 557 ~vge~G~~LSgGQrQRiaiA-RA~~~--~~iahr----l~~~~~aD~I~vl~~ 602 (632)
++.++|..+|+||+||+++| |+++. ...-.. ......+|.+++++-
T Consensus 104 p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 104 PLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEV 156 (208)
T ss_dssp EEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECC
T ss_pred ccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeC
Confidence 89999999999999999998 87432 111111 012456899888873
No 150
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.72 E-value=5.2e-09 Score=106.84 Aligned_cols=139 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCcH------Hh--hcceEEEcccCc-cccc-cc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAPE------AE--QEKIGLVSKEPI-FLFC-DF 142 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~~------~~--r~~i~~v~Q~~~-~~~~-~~ 142 (632)
++|++++|++++|+||||||||||++.|.+.. .+... .+ +..++|++|++. .++. +.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v 172 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 172 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence 78889999999999999999999999986431 11111 12 346999999875 4321 11
Q ss_pred ccccccc--------------cCCCCCCHHHHHHHHH-HccchhhHhhCCcccc--ccc--ccCCCCHHHHHHHHHHHHH
Q 047286 143 NEGQYIP--------------YGKQNASDEHIRPAVQ-LANAEKSIDKLPLGLD--TVV--ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 143 ~~~~~i~--------------~~~~~~~~~~~~~~~~-~~~l~~~i~~l~~g~~--~~v--~ts~LD~~~~~~i~~~l~~ 203 (632)
.+ ++. .+........+.+.-+ ...+ ...++..-+ -.+ +|+++|+..+. ++
T Consensus 173 ~e--~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~i---aral~~~P~e~lLvLDptsglD~~~~~------~~ 241 (302)
T 3b9q_A 173 SK--AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAV---GKIVSGAPNEILLVLDGNTGLNMLPQA------RE 241 (302)
T ss_dssp HH--HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHH---HTTSTTCCSEEEEEEEGGGGGGGHHHH------HH
T ss_pred HH--HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHH---HHhhccCCCeeEEEEeCCCCcCHHHHH------HH
Confidence 11 111 1221222222222110 0001 112222111 111 58999987542 23
Q ss_pred Hh--CCceEEEEecC---------chHHh-hcCeEEEEeCCeEE
Q 047286 204 LV--TNQTVVIVANC---------LITIR-NADCIIMVSKGKIV 235 (632)
Q Consensus 204 ~~--~~~tviiitH~---------~~~~~-~aD~i~vl~~G~i~ 235 (632)
+. .+.|+|++||. ++... ..+.|.++..|+.+
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 32 37899999993 33333 37899999999753
No 151
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.72 E-value=2.1e-08 Score=104.31 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEEe
Q 047286 186 TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
|++||+..+..+.+.|+++. ++.|+|++||+.+....||++++|+
T Consensus 282 ~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 282 TPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp CTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 89999999999999999874 4679999999987767799999986
No 152
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.72 E-value=6.3e-09 Score=108.61 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=85.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----------------hhcceEEEcccCcccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----------------EQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----------------~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
+...+++|++++|+||||||||||++.+++.....|.. .++++++++|.+.++..++.+ |+.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~--ni~ 201 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK--HIY 201 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGG--GEE
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhh--CEE
Confidence 45679999999999999999999999887542112111 134566666666544444444 455
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCcccc-ccc-----ccCCCCHHH------------HHHHHHHHHHHh--CCce
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLD-TVV-----ATNAVDAQS------------ERIVQAAMVKLV--TNQT 209 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-~~v-----~ts~LD~~~------------~~~i~~~l~~~~--~~~t 209 (632)
+... .......+.++. +...+.+++.|.. ..+ .|+.+|+.. ...+...|.++. .+.|
T Consensus 202 ~~~~-~~~~~~~~~l~~--~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t 278 (349)
T 1pzn_A 202 VARA-FNSNHQMLLVQQ--AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA 278 (349)
T ss_dssp EEEC-CSHHHHHHHHHH--HHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEec-CChHHHHHHHHH--HHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 4432 223333334433 3455677777652 111 378888852 234455555553 3789
Q ss_pred EEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 210 VVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 210 viiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+|+++|....... ++.......|++++++.+..+
T Consensus 279 vii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 279 VFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999998764432 344566777888777654444
No 153
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.71 E-value=2.7e-10 Score=115.69 Aligned_cols=72 Identities=10% Similarity=0.029 Sum_probs=50.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh-------h--------cH---HHH--------------------HHHHHHHHh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ-------V--------IY---SWI--------------------IIKCTNFIA 548 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~-------~--------~~---~~~--------------------~~~~~~~i~ 548 (632)
+|||+|+||||||||+++|.+++.++. + .. ... ...+.+++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~ 112 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLN 112 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHH
Confidence 569999999999999999998876531 1 00 000 224568899
Q ss_pred cCCCccCcc------cccCCCCCChHHHHHHHHHHH
Q 047286 549 SLPQGSDLN------VGERGLQLSGGLKQRIARTRA 578 (632)
Q Consensus 549 ~lp~g~dt~------vge~G~~LSgGQrQRiaiARA 578 (632)
.+++|++|. +...+.++||||+||+++||+
T Consensus 113 ~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 113 TIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp HHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred HhhccCccccCcceeeccCccccCCccccccccccc
Confidence 999998864 456678999999999999865
No 154
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.68 E-value=2e-10 Score=121.13 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=61.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh----hcHH-----------------HHHH----------------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ----VIYS-----------------WIII---------------------- 541 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----~~~~-----------------~~~~---------------------- 541 (632)
++++|||||||||||||+++|.|+|+|+. .... ..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~~nl~~~~~ 249 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDT 249 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHCSSEEEESS
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhccCCEEEEeC
Confidence 45789999999999999999999998754 1000 0000
Q ss_pred --------------HHHHHHhcCCCc--cCccc-c-------cCCCCCChHHHHHHHHHHHHhh---------hccccch
Q 047286 542 --------------KCTNFIASLPQG--SDLNV-G-------ERGLQLSGGLKQRIARTRARNY---------CGCGSPP 588 (632)
Q Consensus 542 --------------~~~~~i~~lp~g--~dt~v-g-------e~G~~LSgGQrQRiaiARA~~~---------~~iahrl 588 (632)
....++..++.+ ++..+ + ++|.++|+||+||++|+|++.. ++++|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 250 DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 001233444433 44322 3 6778899999999999999832 3344543
Q ss_pred hhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 589 YHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 589 ~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
..-+-+|++.++++ +++.|+-+||.+
T Consensus 330 ~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 330 YLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 33344566655554 556666666654
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.67 E-value=1.8e-08 Score=102.80 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||++.|.+
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 778899999999999999999999998864
No 156
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.67 E-value=1.6e-08 Score=105.57 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHH
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el 243 (632)
|++||+..++.+.+.+.++. .|+|++||. +. .||++++|++|++++.|+++++
T Consensus 302 ~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 302 TAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSEEEEEETTEEEECCCTTTS
T ss_pred cccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCEEEEEECCEEEecCCHHHH
Confidence 89999999999999998874 799999994 43 8999999999999999998876
No 157
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.67 E-value=1.2e-08 Score=116.31 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=72.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC------CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|+ |++++|+||||||||||+|++.++.. +.|. .+..+++++| +| ..+...+|+..+....
T Consensus 572 isl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---i~-~~~~~~d~l~~g~S~~---- 639 (765)
T 1ewq_A 572 LEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---IY-TRIGASDDLAGGKSTF---- 639 (765)
T ss_dssp EEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---EE-EECCC------CCSHH----
T ss_pred ccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---hh-ccCCHHHHHHhcccHH----
Confidence 5554 99999999999999999998865421 1121 2455777776 22 2233333565543211
Q ss_pred HHHHHHHccchhhHhhCCccccccc------ccCCCCHHHH-HHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV------ATNAVDAQSE-RIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v------~ts~LD~~~~-~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
..+..+.+. .+.... .-+-.+ +|+++|+.+. ..+.+.+.+ .+.|+|++||+.+....+ .-.+.++
T Consensus 640 ~~e~~~la~---il~~a~-~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~ 711 (765)
T 1ewq_A 640 MVEMEEVAL---ILKEAT-ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNL 711 (765)
T ss_dssp HHHHHHHHH---HHHHCC-TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEE
T ss_pred HHHHHHHHH---HHHhcc-CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEE
Confidence 111112111 111110 001111 3899999875 568888876 578999999998876655 2223455
Q ss_pred eEEEe
Q 047286 233 KIVEK 237 (632)
Q Consensus 233 ~i~~~ 237 (632)
++...
T Consensus 712 ~~~~~ 716 (765)
T 1ewq_A 712 HVAAR 716 (765)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 158
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.65 E-value=1e-09 Score=110.35 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++|||||||||||||+++|+|++.|++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 689999999999999999999987754
No 159
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.64 E-value=6.3e-10 Score=114.22 Aligned_cols=93 Identities=15% Similarity=0.024 Sum_probs=58.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh-------------hcHHHH-----------------HHHHHHHHhcCCCccC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ-------------VIYSWI-----------------IIKCTNFIASLPQGSD 555 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------~~~~~~-----------------~~~~~~~i~~lp~g~d 555 (632)
.++||+||||||||||+++|.++++|.. +..... ...+.+++..+..|+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc
Confidence 3569999999999999999999876521 000010 1123345554444443
Q ss_pred -cccccCCCCCChHHHHHHHHHHHHhh---h------ccc---cchhhhhcCCEEEEEeC
Q 047286 556 -LNVGERGLQLSGGLKQRIARTRARNY---C------GCG---SPPYHYKNADITSVVKN 602 (632)
Q Consensus 556 -t~vge~G~~LSgGQrQRiaiARA~~~---~------~ia---hrl~~~~~aD~I~vl~~ 602 (632)
..+ ..||||||||+++|||++. + ... +....-+..|..++++.
T Consensus 171 ~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a 226 (312)
T 3aez_A 171 YACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDA 226 (312)
T ss_dssp CEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEE
T ss_pred cCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEEC
Confidence 223 3799999999999999664 1 111 22333456787777753
No 160
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.64 E-value=4.2e-09 Score=108.06 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=61.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccccccccccccc----CCC-CCCHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY----GKQ-NASDEHIRPAV 164 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~----~~~-~~~~~~~~~~~ 164 (632)
+++|++++|+||||||||||+++|.++.. +..-..++++++|++.++..+..+ |+.+ +.+ ..+.+.+.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~~~v~~v~qd~~~~~~t~~e--~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHHPRVDLVTTDGFLYPNAELQ--RRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTCCCEEEEEGGGGBCCHHHHH--HTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCCCeEEEEecCccCCcccHHH--HHHHHHhcCCChHHHHHHHHHHH
Confidence 78999999999999999999999985422 111125699999998766555444 4433 211 22345566666
Q ss_pred HHccc---hhhHhhCCcccccccc
Q 047286 165 QLANA---EKSIDKLPLGLDTVVA 185 (632)
Q Consensus 165 ~~~~l---~~~i~~l~~g~~~~v~ 185 (632)
+..+. +..+..|++|+.++++
T Consensus 163 ~~l~~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 163 TSVKSGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp HHHHTTCSCEEEEEEETTTTEEEE
T ss_pred HHhCCCcccCCcccCChhhhhhhh
Confidence 65541 1345678889887763
No 161
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.64 E-value=2.4e-08 Score=103.98 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=79.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCcH------Hh--hcceEEEcccCc-cccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAPE------AE--QEKIGLVSKEPI-FLFC-D 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~~------~~--r~~i~~v~Q~~~-~~~~-~ 141 (632)
.++|++++|++++|+||||||||||++.|.+.. .+.+. .+ +..++|++|++. .+.. +
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 378889999999999999999999999986431 11111 12 457999999875 3321 1
Q ss_pred cccccccc--------------cCCCCCCHHHHHHHHH-HccchhhHhhCCc--ccccccccCCCCHHHHHHHHHHHHHH
Q 047286 142 FNEGQYIP--------------YGKQNASDEHIRPAVQ-LANAEKSIDKLPL--GLDTVVATNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 142 ~~~~~~i~--------------~~~~~~~~~~~~~~~~-~~~l~~~i~~l~~--g~~~~v~ts~LD~~~~~~i~~~l~~~ 204 (632)
..+ ++. .+........+.+.-+ ...+...+..-|. =+--- +|+++|+.++. +++
T Consensus 229 v~e--~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~ 299 (359)
T 2og2_A 229 LSK--AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF 299 (359)
T ss_dssp HHH--HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred HHH--HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHH
Confidence 111 111 1222222222222110 0011111111122 11111 68999987653 223
Q ss_pred h--CCceEEEEecC---------chHHh-hcCeEEEEeCCeE
Q 047286 205 V--TNQTVVIVANC---------LITIR-NADCIIMVSKGKI 234 (632)
Q Consensus 205 ~--~~~tviiitH~---------~~~~~-~aD~i~vl~~G~i 234 (632)
. .+.|+|++||. ++... ..+.|.++..|+.
T Consensus 300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2 37899999993 33333 3789999999974
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.63 E-value=3.3e-08 Score=96.53 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=35.1
Q ss_pred cCCC--CHHHHHHHHHHHHHHh--CCceEEEEecCc--------hHHh-hcCeEEEEeCCe
Q 047286 186 TNAV--DAQSERIVQAAMVKLV--TNQTVVIVANCL--------ITIR-NADCIIMVSKGK 233 (632)
Q Consensus 186 ts~L--D~~~~~~i~~~l~~~~--~~~tviiitH~~--------~~~~-~aD~i~vl~~G~ 233 (632)
++.+ |+...+.+.+.|+++. .+.|+|+++|+. ..+. .||+|++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 4444 9888888888888874 378999999998 3355 499999998653
No 163
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.63 E-value=2.3e-08 Score=115.82 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=72.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccc------ccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFL------FCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~------~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|++++|++++|+||||||||||+|++.++.. ..+.-.++|++...+ +..+...+++..+..... .+
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs-~e 739 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFM-EE 739 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHTCCBSSSEEEEECCSEEEEEC----------CCHH-HH
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhh-HH
Confidence 899999999999999999999999998853211 000111233221100 001111112221111111 11
Q ss_pred HHHHHHHccchhhHhhCCccccccc----ccCCCCHHHHHHHH-HHHHHHh--CCceEEEEecCchHHhhcCeEEE-EeC
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV----ATNAVDAQSERIVQ-AAMVKLV--TNQTVVIVANCLITIRNADCIIM-VSK 231 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v----~ts~LD~~~~~~i~-~~l~~~~--~~~tviiitH~~~~~~~aD~i~v-l~~ 231 (632)
..+....+. .. .....+ +++|+|+.....+. ..++.+. .+.|+|++||+++....||+.-- +.+
T Consensus 740 m~~~~~il~------~a--~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n 811 (918)
T 3thx_B 740 LTDTAEIIR------KA--TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGN 811 (918)
T ss_dssp HHHHHHHHH------HC--CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEE
T ss_pred HHHHHHHHH------hc--cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEE
Confidence 122221111 10 011112 48999999888876 5666653 47899999999987776766431 445
Q ss_pred CeEE
Q 047286 232 GKIV 235 (632)
Q Consensus 232 G~i~ 235 (632)
+++.
T Consensus 812 ~~~~ 815 (918)
T 3thx_B 812 YHMG 815 (918)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 164
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.58 E-value=1.2e-08 Score=114.36 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=77.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCC-C------------------cHHhhcceEEEcccCcccccccccccccccCCCCCC
Q 047286 96 VALVGQSGSGKSTVINLVESFRFY-A------------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNAS 156 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~~~~~-~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~ 156 (632)
++|+||||||||||+++|.|+... + ...+++.++|++|++.++. ..+..+|+.+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~-~~tv~e~i~~~----- 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISD-ASEVEKEINKA----- 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCC-HHHHHTTHHHH-----
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCC-HHHHHHHHHHH-----
Confidence 999999999999999999976322 0 0124567888888875432 11111132211
Q ss_pred HHHHHHHHHHc--cchh---------------hHhhCCcccccccccCCCCHHHHHHHHHHHHHHh-C--CceEEEEecC
Q 047286 157 DEHIRPAVQLA--NAEK---------------SIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLV-T--NQTVVIVANC 216 (632)
Q Consensus 157 ~~~~~~~~~~~--~l~~---------------~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~-~--~~tviiitH~ 216 (632)
....... +..+ .+-..|+ + ...+|++||+..++.+.+.++++. + +.++++++|+
T Consensus 122 ----~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePG-i-~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 122 ----QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPG-I-TRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp ----HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC--------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred ----HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCC-c-cccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 0000000 0000 0111121 0 112389999999999999999963 3 4578888998
Q ss_pred chH--------Hhh-----cCeEEEEeCCeEEEecChhHHh
Q 047286 217 LIT--------IRN-----ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 217 ~~~--------~~~-----aD~i~vl~~G~i~~~g~~~el~ 244 (632)
++. +.. ...|+|+.++.++..|+.+++.
T Consensus 196 ~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 196 VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred chhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 652 122 3568999999988888765543
No 165
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.58 E-value=3.2e-09 Score=110.45 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=73.6
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc---------HH-HH--------------------------------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQVI---------YS-WI-------------------------------- 539 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~---------~~-~~-------------------------------- 539 (632)
|.-++++||+||+|||||||+++|.|+.+|+... .. ..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~ 147 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFT 147 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHH
Confidence 4445589999999999999999999998875310 00 00
Q ss_pred HHHHHHHHhcCCCccCcc-cccCCCCCChHHHHHHHHHHH------------------Hh------h----------hcc
Q 047286 540 IIKCTNFIASLPQGSDLN-VGERGLQLSGGLKQRIARTRA------------------RN------Y----------CGC 584 (632)
Q Consensus 540 ~~~~~~~i~~lp~g~dt~-vge~G~~LSgGQrQRiaiARA------------------~~------~----------~~i 584 (632)
...+.++... .|.+.. +-+.-.+||+|| ||+++|.. ++ . ++.
T Consensus 148 ~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~ 224 (347)
T 2obl_A 148 ATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLE 224 (347)
T ss_dssp HHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECC
T ss_pred HHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEe
Confidence 0011122111 232211 113456799999 99999932 00 0 345
Q ss_pred ccchhhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 585 GSPPYHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 585 ahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+|.++ -.-||+++++.+|+|+..|+.+++..
T Consensus 225 thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 225 SDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp SSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred CCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 78877 56799999999999999999888753
No 166
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.57 E-value=1.2e-09 Score=114.62 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||+++|.+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 677889999999999999999999999984
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.56 E-value=1.4e-08 Score=101.50 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=64.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcce-------EEEcccCcccccccccccccccCCCCCCHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-------GLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP 162 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i-------~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (632)
+++|++++|+||||||||||+++|.+. ++|. ....| .|++|++..+ +.. ..++..... +..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~-~~G~I~~~g~~i~~~~~~~~~~---v~q---~~~gl~~~~---l~~ 89 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY--INQT-KSYHIITIEDPIEYVFKHKKSI---VNQ---REVGEDTKS---FAD 89 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHH-CCCEEEEEESSCCSCCCCSSSE---EEE---EEBTTTBSC---HHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh--CCCC-CCCEEEEcCCcceeecCCccee---eeH---HHhCCCHHH---HHH
Confidence 899999999999999999999999843 3332 01222 2333322110 000 011111111 111
Q ss_pred HHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeC
Q 047286 163 AVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 163 ~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
++..+ +..-|. -.+.-.--|+++...+ ++....+.++++++|+.+....|||+++|..
T Consensus 90 ~la~a-----L~~~p~---illlDEp~D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 90 ALRAA-----LREDPD---VIFVGEMRDLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH-----HHHCCS---EEEESCCCSHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHH-----HhhCCC---EEEeCCCCCHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 22111 111121 1111011188776544 3344568899999999987777999988854
No 168
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.53 E-value=3.4e-08 Score=93.63 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-----------CCcHHhhcceEEEcccC
Q 047286 93 GTTVALVGQSGSGKSTVINLVESFRF-----------YAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~~~-----------~~~~~~r~~i~~v~Q~~ 135 (632)
|++++|+||||||||||+++|.+... .....+++++||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999875321 01123467899999975
No 169
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.49 E-value=6e-09 Score=98.81 Aligned_cols=54 Identities=4% Similarity=0.011 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHhC-CceEEEEecC-chHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 187 NAVDAQSERIVQAAMVKLVT-NQTVVIVANC-LITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~~~-~~tviiitH~-~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
.++|+...+. ++.+..+.. +.++|.+||. ++.++. ||+|+ ++|+++.+|+++-+
T Consensus 126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 5788877777 777777643 5789999998 887765 99998 99999999987765
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=1.7e-09 Score=102.64 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhh-cHHH-HHHHHH------HH-----------HhcC----C-CccCcccccC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQV-IYSW-IIIKCT------NF-----------IASL----P-QGSDLNVGER 561 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-~~~~-~~~~~~------~~-----------i~~l----p-~g~dt~vge~ 561 (632)
++++|+||+|||||||+++|.+++. ++- ...- ...++. .+ +..+ + ...+..+|+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~ 80 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQY 80 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSS
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceE
Confidence 3689999999999999999999875 321 0000 000000 00 0000 0 0022367888
Q ss_pred CCCCChHHHHHH-HHHH---HHhh---------------------------------hc---cc--cchhhhhcCCEEEE
Q 047286 562 GLQLSGGLKQRI-ARTR---ARNY---------------------------------CG---CG--SPPYHYKNADITSV 599 (632)
Q Consensus 562 G~~LSgGQrQRi-aiAR---A~~~---------------------------------~~---ia--hrl~~~~~aD~I~v 599 (632)
|..+|+|||+++ +++| |... ++ ++ |+.+ ...+|+|..
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~-~~~vd~i~~ 159 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP-LALVEEIRN 159 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC-CTTHHHHHT
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc-hHHHHHHee
Confidence 889999999998 6666 4211 22 34 8765 566789999
Q ss_pred EeCCeEeeec
Q 047286 600 VKNGVIAEKG 609 (632)
Q Consensus 600 l~~G~ive~G 609 (632)
+++|+|++-.
T Consensus 160 ~~~~~i~~~~ 169 (189)
T 2i3b_A 160 RKDVKVFNVT 169 (189)
T ss_dssp TCCSEEEECC
T ss_pred cCCcEEEEeC
Confidence 9999999843
No 171
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.42 E-value=1e-06 Score=85.15 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=30.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+++|++++|+||||||||||++.+.+ .....+.|+..+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~-------~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL-------LSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH-------HHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH-------HcCCcEEEEECCC
Confidence 78999999999999999999999974 1123466665544
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.40 E-value=1.2e-07 Score=96.71 Aligned_cols=123 Identities=17% Similarity=0.106 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC-------------CCc---HH---h--hcceEEEcccCccccc-ccccc----
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRF-------------YAP---EA---E--QEKIGLVSKEPIFLFC-DFNEG---- 145 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~-------------~~~---~~---~--r~~i~~v~Q~~~~~~~-~~~~~---- 145 (632)
+|++++|+||||||||||+++|.+... +.+ .+ + +..+++++|++.++.. +..++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999864310 111 11 1 3568999998754321 11110
Q ss_pred -----cccc---cCCCCCCHHHHHHHHHHccchh-hHhhCCcccccccccCCCCHHHHHHHHHHHHHHhC--CceEEEEe
Q 047286 146 -----QYIP---YGKQNASDEHIRPAVQLANAEK-SIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVT--NQTVVIVA 214 (632)
Q Consensus 146 -----~~i~---~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~--~~tviiit 214 (632)
+.+. .+........+.+. +. ... ....++..-+.. .-.||+.+.+.+.+.++++.+ +.|+|++|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eL-s~--~r~~iaRal~~~P~~~--lLvLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEEL-KK--VKRAIAKADPEEPKEV--WLVLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHH-HH--HHHHHHHHCTTCCSEE--EEEEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHH-HH--HHHHHHHhhcCCCCeE--EEEEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 0000 11111122222111 10 000 011222211111 127888887778888877643 78999999
Q ss_pred cCchH
Q 047286 215 NCLIT 219 (632)
Q Consensus 215 H~~~~ 219 (632)
|+...
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 97643
No 173
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.39 E-value=4.3e-07 Score=94.44 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.0
Q ss_pred cEEEee-EEEEEecCCCChHHHHHhh
Q 047286 501 DIVFEH-TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 501 ~I~f~~-~vaIVG~SGsGKSTL~~ll 525 (632)
.|+|+. ..+|+||+|||||||+.+|
T Consensus 18 ~i~f~~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 18 VVEFKEGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHH
T ss_pred EEcCCCCeEEEECCCCCCHHHHHHHH
Confidence 466653 7899999999999999965
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=6.9e-08 Score=92.49 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
|+++++|++++|+||||||||||+++|.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 567889999999999999999999999854
No 175
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.37 E-value=6.7e-08 Score=88.77 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR 117 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~ 117 (632)
+||++++|++++|+||||||||||+++|.+..
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 77889999999999999999999999998653
No 176
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.36 E-value=4.4e-08 Score=103.10 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|++++|+||||||||||+++|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999999999974
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=1.8e-07 Score=95.59 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=57.0
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-----------------h-hcceEEEcccCccc-----------
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----------------E-QEKIGLVSKEPIFL----------- 138 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-----------------~-r~~i~~v~Q~~~~~----------- 138 (632)
|++.+|++++|+||||||||||+|+|.++....... . .+.+++++|.|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999997543211100 0 12589999998531
Q ss_pred ----ccccccccccccCCC---CCCHHHHHHHHHHccch-hhHhhCCc
Q 047286 139 ----FCDFNEGQYIPYGKQ---NASDEHIRPAVQLANAE-KSIDKLPL 178 (632)
Q Consensus 139 ----~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~l~-~~i~~l~~ 178 (632)
+..++. +|+.++.. .....++.++++..++. +..+.+|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 223333 46665321 22345677888888873 44555443
No 178
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=9.9e-08 Score=101.09 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=46.1
Q ss_pred EEEEeeCCCE--EEEEcCCCchHHHHHHHHHhCCCCC-------cHHhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTT--VALVGQSGSGKSTVINLVESFRFYA-------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~--~~ivG~sGsGKSTLl~ll~~~~~~~-------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||++++|++ ++|+||||||||||+|+|.|..... +...++.++|++|++.++. .++..+++.++.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ltv~D~~~~g~ 107 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRL-KLTIVSTVGFGD 107 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEE-EEEEEEEECCCC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcccc-ccchhhhhhhhh
Confidence 8899999999 9999999999999999998764321 2223457999999986542 233333677764
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.29 E-value=1.2e-06 Score=85.94 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=24.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|++++|+||||||||||++.+++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999999998875
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.27 E-value=2.8e-07 Score=93.11 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.6
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+++|++++|+||||||||||++.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999998763
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.25 E-value=6.2e-07 Score=93.47 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=64.1
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccc-cccc-ccccccCCCCCCHHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFC-DFNE-GQYIPYGKQNASDEHIRPAVQL 166 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~-~~~~-~~~i~~~~~~~~~~~~~~~~~~ 166 (632)
...+|++++|+||||||||||++++.+. .++.. ...+-.+ .+|.-+.. .... ......+....+ +.+++..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~-~~~i~t~-ed~~e~~~~~~~~~v~q~~~~~~~~~---~~~~La~ 191 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTK-YHHILTI-EDPIEFVHESKKCLVNQREVHRDTLG---FSEALRS 191 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHH--HHHHC-CCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSC---HHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhc--ccCCC-CcEEEEc-cCcHHhhhhccccceeeeeeccccCC---HHHHHHH
Confidence 3568889999999999999999998743 22210 1222222 22221110 0000 000011111111 1223322
Q ss_pred ccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 167 ANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 167 ~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
+-. .-| +-.+.----|+++.+.+.++ ...|.|+++++|+.+.+..+||++.|..|
T Consensus 192 aL~-----~~P---dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 192 ALR-----EDP---DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HTT-----SCC---SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred Hhh-----hCc---CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 211 111 11111111266665444333 34589999999999998889999888554
No 182
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.23 E-value=7.3e-07 Score=92.52 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC-hh
Q 047286 507 TVALVGENGNGKSTVISLAERFHN-PE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~-~~ 532 (632)
+++|+||||||||||+++|.++.. +.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred EEEEECCCCccHHHHHHHHhccccccc
Confidence 679999999999999999999987 64
No 183
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.21 E-value=3.5e-07 Score=96.98 Aligned_cols=27 Identities=41% Similarity=0.617 Sum_probs=24.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
.+||+||||||||||+++|.|++.|++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccC
Confidence 679999999999999999999988754
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.21 E-value=1.3e-06 Score=89.18 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCcccccccccccccccCCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQ 153 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~ 153 (632)
++|+| +|+||||+|||||++.|.+..... +......+++++|++... ..++..++..++..
T Consensus 17 ~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~-~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 17 FEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK-LRLTVVDTPGYGDA 89 (301)
T ss_dssp -CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CC-EEEEEEEEC-----
T ss_pred CCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc-cCcchhhhhhhhhh
Confidence 66766 999999999999999987541111 111134578888875432 12222223333321
Q ss_pred CCCHHHHHHHHHH--ccchhhHhhCCcccccccc-------------cC-CCCHHHHHHHHHHHHHHhC--CceEEEEec
Q 047286 154 NASDEHIRPAVQL--ANAEKSIDKLPLGLDTVVA-------------TN-AVDAQSERIVQAAMVKLVT--NQTVVIVAN 215 (632)
Q Consensus 154 ~~~~~~~~~~~~~--~~l~~~i~~l~~g~~~~v~-------------ts-~LD~~~~~~i~~~l~~~~~--~~tviiitH 215 (632)
....++.....+. ...+..+..+++|+++++. |+ +||+... +.++++.+ +.++|+.+|
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 1001111111111 1123567778888765552 55 5999863 44555543 467888889
Q ss_pred Cch
Q 047286 216 CLI 218 (632)
Q Consensus 216 ~~~ 218 (632)
|+.
T Consensus 166 Dl~ 168 (301)
T 2qnr_A 166 DTL 168 (301)
T ss_dssp GGS
T ss_pred CCC
Confidence 874
No 185
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=2.3e-06 Score=80.15 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=67.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH---------------------HhhcceEEEcccCcccc-c--
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE---------------------AEQEKIGLVSKEPIFLF-C-- 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~---------------------~~r~~i~~v~Q~~~~~~-~-- 140 (632)
.+++++.+| +++|+||||||||||+++|......... ..+..|.+++|++..-. .
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 488999999 9999999999999999988542111000 12345888888753210 0
Q ss_pred -cccccccc--------ccCCCCCCHHHHHHHHHHccchhh-HhhCCcccccccccCCCCHHHHHHHHHHHHH
Q 047286 141 -DFNEGQYI--------PYGKQNASDEHIRPAVQLANAEKS-IDKLPLGLDTVVATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 141 -~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~l~~~-i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~ 203 (632)
.+.....+ .........+++.+.++..++... ..-++.|..+.+. .++|..++.+++.+..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~--~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFI--KMSPLERRLLIDDISG 168 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHH--HSCHHHHHHHHHHHHT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHH--hCCHHHHHHHHHHHHC
Confidence 11110001 111112356777888877766532 3345555554432 3678888877776644
No 186
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=1.6e-06 Score=90.83 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh----------------------hc-H------------HHHH----------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ----------------------VI-Y------------SWII---------- 540 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------~~-~------------~~~~---------- 540 (632)
+.++|+||||||||||+++|.|+|+|++ +. . ...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 3679999999999999999999998743 00 0 0001
Q ss_pred --------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHH
Q 047286 541 --------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578 (632)
Q Consensus 541 --------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA 578 (632)
..+.+++..+|.|++|.+++-+.+-..+..+|+.....
T Consensus 256 ~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 256 ILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred EEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 14568999999999999999888888999999988765
No 187
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.12 E-value=6.3e-07 Score=87.73 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=22.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH-hC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE-SF 116 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~-~~ 116 (632)
.+||++++|++++|+||||||||||+++|. +.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999999999999998 65
No 188
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.10 E-value=2.2e-06 Score=87.50 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=35.8
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------------Hhh-cceEEEcccCcc
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------------AEQ-EKIGLVSKEPIF 137 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------------~~r-~~i~~v~Q~~~~ 137 (632)
+++.+|++++|+||||||||||+|+|. ....... ..+ ..+||++|+|.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 345689999999999999999999997 4321100 011 258999999964
No 189
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.09 E-value=9.6e-07 Score=83.44 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+||+||||||++++|.+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 367999999999999999998864
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.08 E-value=3.8e-08 Score=107.56 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+++|+.++|+||||||||||+++|.++
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5566789999999999999999999999854
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.08 E-value=4.8e-06 Score=84.66 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=28.5
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.+.+.-++.++|+||+|||||||++.|.+...++
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34567777789999999999999999888876543
No 192
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.07 E-value=4.7e-06 Score=88.12 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.0
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
-|++|+++.|+||||||||||++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHH
Confidence 3899999999999999999999955
No 193
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.06 E-value=3.4e-06 Score=76.33 Aligned_cols=53 Identities=19% Similarity=0.002 Sum_probs=40.6
Q ss_pred ccCccc-----ccCCCCCChHHHHHHHHH------HHHhh------------------------------------hccc
Q 047286 553 GSDLNV-----GERGLQLSGGLKQRIART------RARNY------------------------------------CGCG 585 (632)
Q Consensus 553 g~dt~v-----ge~G~~LSgGQrQRiaiA------RA~~~------------------------------------~~ia 585 (632)
+|++.+ .....+||||||||++|| ||+.. +++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 666665 234578999999999876 77443 6789
Q ss_pred cchhhhhcCCEEEEE--eCCeE
Q 047286 586 SPPYHYKNADITSVV--KNGVI 605 (632)
Q Consensus 586 hrl~~~~~aD~I~vl--~~G~i 605 (632)
|.....+.||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 998777889999999 55643
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.06 E-value=1e-06 Score=84.81 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=34.9
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccc
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLF 139 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~ 139 (632)
.++|++++|+||||||||||+++|.+. +.+. ...+++++++...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~--~~~~--g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA--LSAQ--GLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH--HHHT--TCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--Hhhc--CCceEEEecCCCcCC
Confidence 467999999999999999999999843 2211 135899999876443
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.04 E-value=3.4e-06 Score=78.91 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCch
Q 047286 186 TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLI 218 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~ 218 (632)
+.++|+..++.+.+.+.... +++++|++||...
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 35899999999999888775 6789999998763
No 196
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.03 E-value=1.4e-06 Score=80.96 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=49.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC----------------C--C---cHHhh-cceE----EEcccCcccccccccccc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRF----------------Y--A---PEAEQ-EKIG----LVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~----------------~--~---~~~~r-~~i~----~v~Q~~~~~~~~~~~~~~ 147 (632)
++++|+|+||||||||+++|.++.. . + ...+| +.++ +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 6899999999999999998863200 1 1 23455 3577 778877655 111
Q ss_pred cccCCCCCCHHHHHHHHHHccchhhHhh-CCccccccccc
Q 047286 148 IPYGKQNASDEHIRPAVQLANAEKSIDK-LPLGLDTVVAT 186 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~~~v~t 186 (632)
+ ..+ . .+++++++.. +| |+++.+..
T Consensus 77 ---~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~E 102 (171)
T 2f1r_A 77 ---V----SEE-E-----GNDLDWIYERYLS-DYDLVITE 102 (171)
T ss_dssp ---C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEE
T ss_pred ---C----Chh-h-----hhCHHHHHHhhCC-CCCEEEEC
Confidence 1 111 1 5678888888 99 89998865
No 197
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.03 E-value=7e-07 Score=103.80 Aligned_cols=99 Identities=16% Similarity=0.002 Sum_probs=62.5
Q ss_pred eEEEEEecCCCChHHHHHhh--------hcCCChhhhcHHHHHHHHHHHHhcCCCccCcccccC---CCCCChHHHHHHH
Q 047286 506 HTVALVGENGNGKSTVISLA--------ERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGER---GLQLSGGLKQRIA 574 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll--------~r~y~~~~~~~~~~~~~~~~~i~~lp~g~dt~vge~---G~~LSgGQrQRia 574 (632)
+.++|+||+||||||+++.+ .|.|-|.+... ...-+.+-+.+|-. -..+|+|++|+..
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------~~~~d~i~~~ig~~d~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------VSIVDCILARVGAGDSQLKGVSTFMAEMLE 731 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------EECCSEEEEECC---------CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------chHHHHHHHhcCchhhHHHhHhhhHHHHHH
Confidence 48999999999999999998 55554432000 00001111222211 1245666666555
Q ss_pred HHHHHhh----------------------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHH
Q 047286 575 RTRARNY----------------------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDAL 614 (632)
Q Consensus 575 iARA~~~----------------------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL 614 (632)
+|+++-. +++||.....+.||++..+++|++...|+.+++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 5555310 678999888889999999999999988877765
Q ss_pred h
Q 047286 615 M 615 (632)
Q Consensus 615 ~ 615 (632)
.
T Consensus 812 ~ 812 (934)
T 3thx_A 812 T 812 (934)
T ss_dssp E
T ss_pred E
Confidence 3
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=3.8e-06 Score=89.26 Aligned_cols=58 Identities=31% Similarity=0.410 Sum_probs=32.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------HhhcceEEEcccCccc-ccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------AEQEKIGLVSKEPIFL-FCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------~~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~ 151 (632)
++|+| +|+||||||||||+++|.+...+.+. ..+..+++++|++.++ ..++.+ +..++
T Consensus 30 vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~D--t~g~~ 99 (418)
T 2qag_C 30 FEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD--TPGFG 99 (418)
T ss_dssp CCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEE--CC---
T ss_pred CCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeee--chhhh
Confidence 77776 99999999999999999876542111 1124578888876543 223333 55554
No 199
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.00 E-value=3.9e-06 Score=78.03 Aligned_cols=45 Identities=24% Similarity=0.058 Sum_probs=37.3
Q ss_pred CCCCChHHHHHHHHHHHHhh---------------------------------------hccccchhhhhcCCEEEEE--
Q 047286 562 GLQLSGGLKQRIARTRARNY---------------------------------------CGCGSPPYHYKNADITSVV-- 600 (632)
Q Consensus 562 G~~LSgGQrQRiaiARA~~~---------------------------------------~~iahrl~~~~~aD~I~vl-- 600 (632)
..+||||||||++||||+.. +++||+..++..||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 35799999999999999741 7889999999999999855
Q ss_pred eCCeEe
Q 047286 601 KNGVIA 606 (632)
Q Consensus 601 ~~G~iv 606 (632)
++|...
T Consensus 142 ~~g~s~ 147 (173)
T 3kta_B 142 RDGVSK 147 (173)
T ss_dssp ETTEEE
T ss_pred cCCEEE
Confidence 577543
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.99 E-value=1.6e-06 Score=89.39 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCchH---------Hh-hcCeEEEEeCCeEE
Q 047286 186 TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLIT---------IR-NADCIIMVSKGKIV 235 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~~~---------~~-~aD~i~vl~~G~i~ 235 (632)
+..||+.+.+.+.+.++.+. .+.|.|++||.... +. ..-.|.++..|+-+
T Consensus 246 llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 246 IFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred EEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 45677777777777777765 37899999995532 11 24578888888754
No 201
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.97 E-value=2.1e-06 Score=89.04 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCC-CCc------------HHhhcceEEEcccCcccccccccccccccCCCCCCH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRF-YAP------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASD 157 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~~------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~ 157 (632)
.+|++++|+||||||||||+|+|.+... ... ...+..+++++|++.++ .+....++ +......
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~-dtpgv~e~---~l~~l~~ 288 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI-DSPGVREF---GLWHLEP 288 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE-ECHHHHTC---CCCCCCH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec-CcccHHHh---hhcCCCH
Confidence 4899999999999999999999986543 211 11234689999987654 33322212 1112333
Q ss_pred HHH----HHHHHHccchhh----HhhCCcccccccc-cCCCCHHHHHHH-HHHHHHH
Q 047286 158 EHI----RPAVQLANAEKS----IDKLPLGLDTVVA-TNAVDAQSERIV-QAAMVKL 204 (632)
Q Consensus 158 ~~~----~~~~~~~~l~~~----i~~l~~g~~~~v~-ts~LD~~~~~~i-~~~l~~~ 204 (632)
+++ .++++..++.++ ...+| |...+++ ..++++..+... .+.+.++
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETRFENYHRILESM 344 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333 234444444333 34667 7776665 345555555444 4444544
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.93 E-value=1.7e-05 Score=78.63 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|++++|+|||||||||++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999997
No 203
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.90 E-value=1.3e-06 Score=89.84 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=30.5
Q ss_pred HhhCCcccccccc-----cCCCCHHHH-HHHHHHHHHHhCCceEEEEecCch
Q 047286 173 IDKLPLGLDTVVA-----TNAVDAQSE-RIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 173 i~~l~~g~~~~v~-----ts~LD~~~~-~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
...+|.|.++++. .+..|...+ +.+.+.++++..+.|++++||+..
T Consensus 139 ~~~ls~g~~Q~~~ad~ill~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 139 MNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHCHHHHHHHHTCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HhhchHHHHHHHhCCEEEEECcccCCHHHHHHHHHHHhCCCCeEEEecccCC
Confidence 3456777766543 123333333 788888888877889999999753
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.89 E-value=1.6e-07 Score=97.95 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.++++|+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 68999999999999999999998875
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=1.7e-05 Score=82.59 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred EEEEcCCCchHHHHHHHHHh-CCCCC-------------cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVES-FRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~-~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+.|.||||+||||+++++.+ +.... +...+..+++++|.+.+.... . ..+ ......++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~--~~~~~~~~ 110 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP-S-----DMG--NNDRIVIQ 110 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC-C-----------CCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH-h-----hcC--CcchHHHH
Confidence 89999999999999998875 21111 112245577777766431110 0 001 11122334
Q ss_pred HHHHHc----cchhhHhhCCc---cccccc---ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchH
Q 047286 162 PAVQLA----NAEKSIDKLPL---GLDTVV---ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219 (632)
Q Consensus 162 ~~~~~~----~l~~~i~~l~~---g~~~~v---~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~ 219 (632)
+.++.. .+.+++ .+|+ +.+..+ +++ ||+.+...+.+.+.+..++.++|++||++..
T Consensus 111 ~~i~~~~~~~~~~~~~-~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 111 ELLKEVAQMEQVDFQD-SKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHHTTTTC-------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHHHHhccccccc-cccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 433332 222211 2232 222222 244 9999999999999987777899999998754
No 206
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.85 E-value=6.8e-06 Score=88.53 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=29.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|++ ++++|+||||||||||+++|.|+
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 38999999 99999999999999999999865
No 207
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.85 E-value=9.2e-06 Score=84.58 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHh---------h---------------------------------hccccchhhhhcCCEEEEEe
Q 047286 564 QLSGGLKQRIARTRARN---------Y---------------------------------CGCGSPPYHYKNADITSVVK 601 (632)
Q Consensus 564 ~LSgGQrQRiaiARA~~---------~---------------------------------~~iahrl~~~~~aD~I~vl~ 601 (632)
.||||||||++|||++. . +++|| +.. .||+|++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~--~~~~i~~l~ 341 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE-LAP--GAALTLRAQ 341 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT--TCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc--cCCEEEEEE
Confidence 59999999999999976 2 56788 444 899999999
Q ss_pred CCeEeeecChHHHh
Q 047286 602 NGVIAEKGRHDALM 615 (632)
Q Consensus 602 ~G~ive~G~h~eL~ 615 (632)
+|+|++.|+++++.
T Consensus 342 ~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 342 AGRFTPVADEEMQA 355 (359)
T ss_dssp TTEEEECCCTTTSC
T ss_pred CCEEEecCCHHHHh
Confidence 99999999999884
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.85 E-value=1.2e-06 Score=90.94 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++|++++|+||||||||||+++|.+
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 667789999999999999999999999874
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.83 E-value=6.8e-06 Score=77.47 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.+++|++++|+||||||||||+++|.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999999854
No 210
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.80 E-value=2.3e-05 Score=70.89 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE--eCCeE
Q 047286 185 ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV--SKGKI 234 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl--~~G~i 234 (632)
+|++||+.+++.+.+.+.++. +++|+|++||+......||++++| ++|..
T Consensus 90 Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 90 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 499999999999999999985 478999999999655679999999 45643
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=2.1e-05 Score=71.30 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+|+.++|+||||||||||++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999974
No 212
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.78 E-value=1.1e-05 Score=77.05 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++++|++++|+|||||||||++++|.+.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999999854
No 213
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.77 E-value=1.4e-05 Score=81.11 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccccccc-------ccccccCCCCCCHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNE-------GQYIPYGKQNASDEHIRPA 163 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~ 163 (632)
++|++++++|||||||||+++.|.+. +.+. ..+++.++.+++. .....+ ..++... ...+..++..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~-~G~~V~lv~~D~~--r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~a 176 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI--SMLE-KHKKIAFITTDTY--RIAAVEQLKTYAELLQAPLE-VCYTKEEFQQA 176 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCCEEEEECCCS--STTHHHHHHHHHTTTTCCCC-BCSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHHh-cCCEEEEEecCcc--cchHHHHHHHHHHhcCCCeE-ecCCHHHHHHH
Confidence 57999999999999999999988632 1110 1236899988873 111110 0011110 01123333322
Q ss_pred HHHccchhhHhhCCccccccc-ccCCCCHHHHHHHHHHHHHHh---CCceEEEE--ecCchHHhh-cCeEEEEeCCeEEE
Q 047286 164 VQLANAEKSIDKLPLGLDTVV-ATNAVDAQSERIVQAAMVKLV---TNQTVVIV--ANCLITIRN-ADCIIMVSKGKIVE 236 (632)
Q Consensus 164 ~~~~~l~~~i~~l~~g~~~~v-~ts~LD~~~~~~i~~~l~~~~---~~~tviii--tH~~~~~~~-aD~i~vl~~G~i~~ 236 (632)
+. .+ .+.+..+ -|+++|+.....+.+..+-+. ...+++++ +|....+.. ++++..++.+.++.
T Consensus 177 l~---------~~-~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 177 KE---------LF-SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HH---------HG-GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HH---------Hh-cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22 22 2334333 388999876665555443332 22344554 788776655 78776677777775
Q ss_pred e
Q 047286 237 K 237 (632)
Q Consensus 237 ~ 237 (632)
.
T Consensus 247 t 247 (296)
T 2px0_A 247 T 247 (296)
T ss_dssp E
T ss_pred e
Confidence 3
No 214
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.75 E-value=8.5e-06 Score=78.18 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=24.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCC
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+|.-++++||+||||||||||+++|.+++.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456666889999999999999999999883
No 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.74 E-value=3.5e-05 Score=75.52 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|+++.|.||||||||||+..+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 899999999999999999996533
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=1.5e-05 Score=74.64 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+|++++|+||||||||||+++|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999999974
No 217
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.71 E-value=1.6e-06 Score=87.89 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-hhcceEEEcccCccccccc
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEA-EQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-~r~~i~~v~Q~~~~~~~~~ 142 (632)
++.+++|+||+|||||||+++|.+ .+.+.. .++.+.+|+|+++++..+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~ 79 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHED 79 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHH
Confidence 568999999999999999999863 222211 1334566699987665443
No 218
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=6.5e-06 Score=83.70 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=25.4
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+|++++|+||||||||||+|+|.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 45779999999999999999999999643
No 219
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=1.5e-05 Score=75.05 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC
Q 047286 93 GTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
|++++|+||||||||||+++|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999843
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.68 E-value=1.1e-05 Score=76.93 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..++||||||||||||+++|.|+|+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4679999999999999999999875
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.66 E-value=3.3e-06 Score=88.85 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHH-hC-CceEEEEecCchHHhh-cCeEE-EEeCC-eEEEecCh
Q 047286 187 NAVDAQSERIVQAAMVKL-VT-NQTVVIVANCLITIRN-ADCII-MVSKG-KIVEKGTH 240 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~-~~-~~tviiitH~~~~~~~-aD~i~-vl~~G-~i~~~g~~ 240 (632)
..+|+...+..++.+.+. .+ +.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 444555555566666665 44 4454 3999877755 99999 99999 88766653
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.65 E-value=1.1e-05 Score=77.50 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.4
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
|.-++++||+||||||||||+++|.|+ .|++
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 444557899999999999999999999 7764
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.65 E-value=1.2e-05 Score=80.22 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=27.5
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.-++.++|+|||||||||++++|.|+++|+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4455688999999999999999999999886
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.65 E-value=1.3e-05 Score=86.04 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCc------HH--hhcceEEEcccCcc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAP------EA--EQEKIGLVSKEPIF 137 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~------~~--~r~~i~~v~Q~~~~ 137 (632)
.+||++++|++++|+|+||||||||+++|.++. .+.. .. .|+.++|++|++.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~ 358 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA 358 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc
Confidence 388899999999999999999999999986431 1111 11 25679999998654
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.64 E-value=3e-05 Score=74.19 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=35.5
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccc
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLF 139 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~ 139 (632)
++++|++++|+|++||||||++++|.+ .+. .+.+++|++.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~--~~~------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQK--HLP------NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHT--TST------TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH--hcC------CcEEEeCCccccC
Confidence 478899999999999999999999973 221 4889999986553
No 226
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.62 E-value=3.2e-06 Score=82.19 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++++++ ++++|+||||||||||+++|+++
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence 566777 89999999999999999999754
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.60 E-value=2.2e-05 Score=73.52 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++|+||||||||||+++|.++++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 679999999999999999999875
No 228
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.58 E-value=1.5e-05 Score=73.05 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=24.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|+||+|||||||+++|.|+. |.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~ 60 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCC
Confidence 466999999999999999999998 644
No 229
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.54 E-value=3.9e-05 Score=73.06 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.7
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+.++|++++|+|||||||||++++|.+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999973
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.53 E-value=3e-05 Score=75.10 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=24.8
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+-++.++|+||||||||||+++|.++++|
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34446799999999999999999999875
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=4.4e-05 Score=72.62 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+||++++|++++|+|++||||||+.+.|.
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 499999999999999999999999999986
No 232
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.50 E-value=2.8e-05 Score=74.53 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++||+||+|||||||+++|.+++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999866
No 233
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=4.9e-05 Score=72.89 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
++|++++|+||||||||||++.|.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999999973
No 234
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.50 E-value=3.4e-05 Score=73.39 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.+||+||||||||||+++|.+++
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 467999999999999999999976
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.48 E-value=3.3e-05 Score=72.66 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++|+||||||||||+++|.++++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 579999999999999999998876
No 236
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.44 E-value=8.1e-05 Score=83.26 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.5
Q ss_pred EEEEecCCCChHHHHHhhhcCCCh
Q 047286 508 VALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+|||||||||||||+++|.|++.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 799999999999999999999877
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.43 E-value=5.3e-05 Score=77.39 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|++++|+||||||||||+++|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999853
No 238
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=6e-05 Score=71.71 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.3
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
..++|++++|+|||||||||++++|.+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999973
No 239
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.42 E-value=6.8e-05 Score=79.55 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----CCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF----YAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----~~~~~~r~~i~~v~Q~~ 135 (632)
++|+++.|+.++|+|+||||||||+++|.+... ++...+...++++.++.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 999999999999999999999999999975521 11122344578887764
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.42 E-value=4e-05 Score=74.68 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=18.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhh-cCC
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAE-RFH 529 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~-r~y 529 (632)
.+.-+..+||+||||||||||+++|. +++
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34555688999999999999999999 887
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.39 E-value=7.9e-05 Score=70.54 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=23.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-|+...+|++++|+||||||||||++.|.
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHH
Confidence 34556689999999999999999999987
No 242
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.35 E-value=2.4e-05 Score=92.05 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+.++|+||+||||||+++.+ ++..+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHH
Confidence 68999999999999999998 77543
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.35 E-value=7.4e-05 Score=72.36 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|.-++.++|+||||||||||+++|.+.+
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999999998844
No 244
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.32 E-value=0.00019 Score=66.62 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEE--eCCeE
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV--SKGKI 234 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl--~~G~i 234 (632)
+|++||+.+++.+.+.|+++.++.++|++||+...+..||+++.+ ++|..
T Consensus 95 p~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s 146 (173)
T 3kta_B 95 IDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVS 146 (173)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEE
T ss_pred CccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEE
Confidence 489999999999999999988788999999999888889999865 46653
No 245
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.31 E-value=7.1e-05 Score=72.94 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|++++|.|+|||||||++++|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999999754
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.30 E-value=7.3e-05 Score=71.13 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
..++|+||+||||||++++|.+++.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46799999999999999999998844
No 247
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00014 Score=79.84 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=26.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++++.+| +++|+|+||||||||+.+|.
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 88899999 99999999999999999885
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.27 E-value=0.00013 Score=71.90 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++++++|+||||||||||+++|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999997
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00011 Score=70.36 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+||||||||||+++|.+.+++
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5699999999999999999988764
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.26 E-value=0.00016 Score=73.53 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=43.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh---------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHH---
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ---------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRI--- 573 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRi--- 573 (632)
++++|+|++||||||++..|.+++.++. ........++..+...+ |++. + ...|+|++|++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~--gl~~-~----~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV--GATV-I----SHSEGADPAAVAFD 177 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH--TCEE-E----CCSTTCCHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc--CCcE-E----ecCCccCHHHHHHH
Confidence 3679999999999999999998876543 11111122333333221 2221 1 14589999999
Q ss_pred HHHHHHhh
Q 047286 574 ARTRARNY 581 (632)
Q Consensus 574 aiARA~~~ 581 (632)
+|+||...
T Consensus 178 al~~a~~~ 185 (306)
T 1vma_A 178 AVAHALAR 185 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88888543
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.26 E-value=0.0001 Score=69.74 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++|+||||||||||+++|.+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 569999999999999999998875
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.26 E-value=0.00012 Score=67.79 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|++++|+|||||||||++++|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999986
No 253
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.24 E-value=0.00028 Score=79.68 Aligned_cols=118 Identities=25% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----------------CCcHHhhcceEEEcccCcccccccccccccc-
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRF----------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP- 149 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~- 149 (632)
+++++++..++|+|++|+|||||++.|.+... +.+.+.++.+++.+|...++..+... |+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~--nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRV--FLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEE--EEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEE--EEEe
Confidence 45678899999999999999999998863211 12333456788888877665554443 332
Q ss_pred -cCCCCCCHHHHHHHHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchH
Q 047286 150 -YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219 (632)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~ 219 (632)
-|..+. ..++...+..+...-.+-. ++.++|+.+++.+. .+.+ .+..++++.|.++.
T Consensus 81 TpG~~~f-~~~~~~~l~~ad~~ilVvD---------~~~g~~~qt~~~~~-~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 81 APGYGDF-VGEIRGALEAADAALVAVS---------AEAGVQVGTERAWT-VAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp CCCSGGG-HHHHHHHHHHCSEEEEEEE---------TTTCSCHHHHHHHH-HHHH--TTCCEEEEEECGGG
T ss_pred CCCccch-HHHHHHHHhhcCcEEEEEc---------CCcccchhHHHHHH-HHHH--ccCCEEEEecCCch
Confidence 222221 2334444444433211111 35678887774443 2322 36778888887654
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.23 E-value=7.9e-05 Score=78.15 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.++|+|||||||||++++|.|+|+|+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 467999999999999999999998875
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00015 Score=66.89 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.|++++|+|||||||||++++|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999999974
No 256
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.19 E-value=0.00021 Score=64.57 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=23.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+| +++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566654 99999999999999999875
No 257
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.18 E-value=8.9e-05 Score=75.42 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+++|||||||||||+++.|.+++.|+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 66999999999999999999988764
No 258
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.18 E-value=6.3e-05 Score=71.75 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=26.5
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
|++++|..++|+|+||||||||++.+.+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999998754
No 259
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.17 E-value=0.00012 Score=72.47 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred EEEEEecCCCChHHHHHhhh---cCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAE---RFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~---r~y~~~~ 533 (632)
+++|+||+||||||++++|. |++.++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 68999999999999999999 8876654
No 260
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.00017 Score=76.65 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++|++++|+||||||||||++++.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999998743
No 261
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.15 E-value=0.0001 Score=72.58 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.3
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcC
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+.-+..+||+||+||||||++++|.++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 333457899999999999999999875
No 262
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.14 E-value=0.00012 Score=78.85 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=26.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++||+||||||||||+++|.|++.|++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 5899999999999999999999998865
No 263
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.10 E-value=0.00019 Score=73.43 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=29.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++||+||||||||||+++|.++....+. ...+++++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~--~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPD--HPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTT--CCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC--CCeEEEEeeccc
Confidence 8999999999999999999744221111 245788888754
No 264
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00013 Score=74.07 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=24.9
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++++|||||||||||+++.|.+++.|+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999887643
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.09 E-value=0.00022 Score=67.81 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.3
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|++++|+|+|||||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999873
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.08 E-value=0.00015 Score=70.04 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
++||+|++||||||++++|.+.|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 267
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.08 E-value=0.00012 Score=76.51 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=27.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||+++|.+
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 678899999999999999999999999974
No 268
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.07 E-value=0.00028 Score=75.53 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.7
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.+++.+|++++|+||||||||||+++|.++
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467788999999999999999999999754
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.04 E-value=0.00018 Score=73.41 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
++||+||+|||||||+++|.+++.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 569999999999999999999876
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.03 E-value=0.0013 Score=69.29 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhh
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLA 525 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll 525 (632)
.|-|+-++.++|+||+|||||||+..+
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHH
Confidence 467888888999999999999999844
No 271
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.03 E-value=8.2e-05 Score=73.41 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=27.7
Q ss_pred EEEEeeC---CCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPS---GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~---Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+||+|++ |++++|+|++||||||+.++|.
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHH
Confidence 8888999 9999999999999999999996
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.01 E-value=0.00023 Score=69.74 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhh
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~ 526 (632)
+.|.|+-++.++|+||+|||||||+++|.
T Consensus 23 l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678888899999999999999999888
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00027 Score=71.89 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++++|+||||||||||+++|.++..|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccc
Confidence 34679999999999999999999998865
No 274
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.98 E-value=0.0041 Score=64.38 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.1
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+++|+++.|.||+|||||||+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999999987654
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.00025 Score=65.30 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+|++||||||++++|.+.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999986543
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.95 E-value=0.00032 Score=66.62 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+|+|||||||++++|.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998754
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00037 Score=68.44 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred eEEEEEecCCCChHHHHHhhh---cCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAE---RFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~---r~y~~~ 532 (632)
..++|+||+||||||++++|. ++..++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 378999999999999999999 887764
No 278
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.91 E-value=0.0002 Score=71.76 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||+++|.+
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 55677888 99999999999999999974
No 279
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.91 E-value=0.00021 Score=82.84 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.4
Q ss_pred cEEEe----eEEEEEecCCCChHHHHHhhhc
Q 047286 501 DIVFE----HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 501 ~I~f~----~~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.|. +.++|+||+||||||+++++.+
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45553 4899999999999999998764
No 280
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.90 E-value=0.00029 Score=74.53 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.1
Q ss_pred cEEEeeE--EEEEecCCCChHHHHHhhhcCC
Q 047286 501 DIVFEHT--VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 501 ~I~f~~~--vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|.-+.. +|||||||||||||+++|+|+.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455556 9999999999999999999974
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00024 Score=73.74 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|||||||||||+++.|.+++.|+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 4679999999999999999999887643
No 282
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.88 E-value=0.00048 Score=65.64 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCC
Q 047286 505 EHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
...++|+|++||||||++++|.+.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999976
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.88 E-value=0.00045 Score=64.77 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHhhhc
Q 047286 506 HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r 527 (632)
..++|+||+||||||++++|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.87 E-value=0.00031 Score=66.69 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|+|++||||||++++|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.87 E-value=0.00026 Score=72.74 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.4
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|||||||||||+++.|.+++.|+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3669999999999999999999887643
No 286
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.84 E-value=0.00044 Score=75.38 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.++++|+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 35999999999999999999998774
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00046 Score=65.70 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.3
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+..+|.+++|+|||||||||+.+.|.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999999886
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.80 E-value=0.00037 Score=73.94 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.+++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45999999999999999999987653
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.78 E-value=0.00066 Score=65.52 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+.+++|+||+||||||++++|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
No 290
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.75 E-value=0.00048 Score=75.71 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+++|++++|+|+||||||||+++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHH
Confidence 477999999999999999999999974
No 291
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.75 E-value=0.00069 Score=62.88 Aligned_cols=24 Identities=50% Similarity=0.585 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|++++|+|++||||||++++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999999996
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.75 E-value=0.00044 Score=70.62 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
++||+|||||||||++++|.++++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 569999999999999999998865
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.74 E-value=0.00034 Score=69.03 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||++++.+
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 45567788 99999999999999999974
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.70 E-value=0.00041 Score=74.48 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.+++|||+|||||||+++.|.+++.++
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 466999999999999999999987664
No 295
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.69 E-value=0.00031 Score=71.28 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|+||||+|||||++.|.++..+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~ 201 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRT 201 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccc
Confidence 4669999999999999999999987754
No 296
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.68 E-value=9.3e-05 Score=71.83 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++|+||||||||||+++|.++..|++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCC
Confidence 579999999999999999999988765
No 297
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.67 E-value=0.00065 Score=64.54 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCC
Q 047286 505 EHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.+++|+|++|||||||++.|.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999876
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.00049 Score=65.40 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+|++||||||+++.|.+++.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5699999999999999999886543
No 299
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.66 E-value=0.00098 Score=63.49 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+ .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4556665 499999999999999999874
No 300
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.65 E-value=0.00042 Score=69.41 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||+++|.+
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence 45667788 99999999999999999974
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.65 E-value=0.00084 Score=62.73 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=24.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|++.++|..++|+|++||||||+.+.|.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 57778889999999999999999999986
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.65 E-value=0.00081 Score=68.30 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
.+++|+||||||||||+++|. +..|+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence 366999999999999999999 888754
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.62 E-value=0.00081 Score=62.08 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||++++|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5799999999999999998864
No 304
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.60 E-value=0.0017 Score=71.26 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=44.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCe
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
+|++||+.+...+.+.|+++.++.|+|+|||+++.+..||++++|+++.
T Consensus 426 p~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 426 VDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp CSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 4999999999999999999877899999999999888899999996653
No 305
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.60 E-value=0.00082 Score=65.29 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|+|++||||||++++|.++
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46799999999999999999886
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.60 E-value=0.00084 Score=62.41 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=24.2
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
++.|. ..++|+||||||||||+.+|..+..+
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34554 37899999999999999998775433
No 307
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.57 E-value=0.0011 Score=62.08 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|+||||||||++.+.+..+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999986543
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.00098 Score=63.35 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+||+|++||||||+.++|.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999884
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.55 E-value=0.0011 Score=63.09 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|+||+||||||+.++|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 310
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.55 E-value=0.00051 Score=62.02 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred EeeEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 504 FEHTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 504 f~~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
-++.++|+||+|||||||++++.+.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999987654
No 311
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.53 E-value=0.0012 Score=62.05 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+++|||++|||||||++.+.+...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 7899999999999999999887543
No 312
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.53 E-value=0.00062 Score=70.27 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|+||+|||||||++.|.+++.|
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 46799999999999999999987654
No 313
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.0008 Score=68.35 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=33.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++++.++|++++|+|||||||||+++.|.+. +.+ ...++.++..++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~--~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVD--EGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHH--TTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHh--cCCEEEEEcccc
Confidence 4556788999999999999999999988732 211 123566665553
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.51 E-value=0.00091 Score=63.32 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhc
Q 047286 505 EHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
...++|+|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999986
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.45 E-value=0.001 Score=63.17 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|||||||||+++.|...+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46999999999999999887655
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.45 E-value=0.0015 Score=61.48 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|+||||||||++.+.+..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999986543
No 317
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.44 E-value=0.0013 Score=69.72 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+++|||+||||||||++.|++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999999865
No 318
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.42 E-value=0.0013 Score=62.28 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 5899999999999999999883
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.42 E-value=0.0014 Score=62.03 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|+|+|||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999984
No 320
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.41 E-value=0.00067 Score=77.87 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.9
Q ss_pred cEEEe---eEEEEEecCCCChHHHHHhhhcC
Q 047286 501 DIVFE---HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 501 ~I~f~---~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++.|. +.++|+||+||||||+++++.++
T Consensus 600 disl~~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 600 PLNLSPQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccCCCcEEEEECCCCCChHHHHHHHHHH
Confidence 56664 48999999999999999998875
No 321
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.38 E-value=0.0014 Score=66.49 Aligned_cols=26 Identities=46% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC-CChh
Q 047286 507 TVALVGENGNGKSTVISLAERF-HNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~-y~~~ 532 (632)
+++||||+|+|||||++.|++. ..|+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 4699999999999999999886 4443
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.34 E-value=0.0016 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.331 Sum_probs=23.1
Q ss_pred EEEEee---CCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVP---SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~---~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++. +|.+++|.|++||||||+++.|.
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 444444 99999999999999999999986
No 323
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.31 E-value=0.0018 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++|..++|+|++|+|||||++.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999753
No 324
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.30 E-value=0.0016 Score=66.72 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++||||||+++.|.+++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 67999999999999999999886
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.29 E-value=0.0012 Score=67.55 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=27.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|++++|++++++|+||+||||++..|.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 377888999999999999999999999886
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.27 E-value=0.0018 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++|||||||++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 327
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.27 E-value=0.0018 Score=67.14 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+.+.+++|+||+|||||||++.+++.+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678888899999999999999999999887
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.27 E-value=0.0017 Score=60.34 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|+|++||||||+.+.|.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999986
No 329
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.23 E-value=0.00051 Score=70.87 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC----C-------CCcHH--------hhcceEEEcccCcccccccccccccc-----
Q 047286 94 TTVALVGQSGSGKSTVINLVESFR----F-------YAPEA--------EQEKIGLVSKEPIFLFCDFNEGQYIP----- 149 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~----~-------~~~~~--------~r~~i~~v~Q~~~~~~~~~~~~~~i~----- 149 (632)
+.++|+||||+|||||++++.+.. . ..... .+..+.+++|...+.. +..+ ++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e--~L~~~~~~ 128 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEE--LLYSAIED 128 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHH--HHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHH--HHHHHHHh
Confidence 689999999999999999986432 0 01111 1345778877654332 2211 110
Q ss_pred cCC-----CCCCHHHHHHHHHHc---cchhhHhhCCcccccccc-cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH
Q 047286 150 YGK-----QNASDEHIRPAVQLA---NAEKSIDKLPLGLDTVVA-TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220 (632)
Q Consensus 150 ~~~-----~~~~~~~~~~~~~~~---~l~~~i~~l~~g~~~~v~-ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~ 220 (632)
+.. .....+.+...+... +.......++.|+.++++ ..+||+.+.+.+.+.|++..+.. -++|+.+.+
T Consensus 129 ~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~ 205 (334)
T 1in4_A 129 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM---DVEIEDAAA 205 (334)
T ss_dssp SCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT---TCCBCHHHH
T ss_pred cccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHH
Confidence 000 000111122222211 233455678888888875 46789988888888887764311 135665554
Q ss_pred h
Q 047286 221 R 221 (632)
Q Consensus 221 ~ 221 (632)
.
T Consensus 206 ~ 206 (334)
T 1in4_A 206 E 206 (334)
T ss_dssp H
T ss_pred H
Confidence 4
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.002 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998754
No 331
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.22 E-value=0.0021 Score=57.91 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|.|. ...+|+||+|||||||+.+|.
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHH
Confidence 46665 378999999999999998765
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.21 E-value=0.002 Score=60.94 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+|++||||||+.+.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.18 E-value=0.0019 Score=61.16 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988754
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.15 E-value=0.0021 Score=61.33 Aligned_cols=25 Identities=44% Similarity=0.461 Sum_probs=23.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.+++|+|++||||||+.+.|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999999986
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0026 Score=59.29 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.8
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+|.++.|+|++||||||+.+.|.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999999986
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.14 E-value=0.0024 Score=59.25 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.+.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.12 E-value=0.003 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
|.++.|+|++||||||+.+.|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999986
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0025 Score=60.12 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+.++|.+.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999875
No 339
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0016 Score=64.09 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHhhhc
Q 047286 505 EHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
+.+++|+|++||||||+.++|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999988
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.10 E-value=0.0011 Score=63.31 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|+|++||||||++++|.+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999987654
No 341
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.09 E-value=0.0025 Score=58.21 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.++|+|++||||||+++.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999984
No 342
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.09 E-value=0.0026 Score=57.86 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 343
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.09 E-value=0.002 Score=61.98 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=25.9
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCC
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
|.+.-++.++|+||+|||||||++.+.+...
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4677677889999999999999998886543
No 344
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.05 E-value=0.0032 Score=57.57 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=19.1
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++|.|++||||||+.+.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
No 345
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.04 E-value=0.003 Score=65.50 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++.+++|+|++|||||||++.|.+.. .+ ...+++++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~--~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML--TE--RGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HH--TTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--hh--cCCeEEEEeecCC
Confidence 46799999999999999999987421 11 1245777777664
No 346
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.04 E-value=0.003 Score=58.05 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.|.+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 347
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.98 E-value=0.0026 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+.++|+||+|+|||||++.+.+.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35699999999999999999887654
No 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.97 E-value=0.0031 Score=58.17 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+.+.|..-.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999988643
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.96 E-value=0.0028 Score=59.36 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.4
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
+.|+|||||||+||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999987653
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0032 Score=58.24 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|+||||||||++.|.+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 57999999999999999877653
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.92 E-value=0.0032 Score=59.31 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||++++|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 479999999999999999987
No 352
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.92 E-value=0.0025 Score=64.64 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++.+++|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999754
No 353
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.91 E-value=0.0028 Score=61.57 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=25.5
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|.|.-++.++|+||+|||||||+..+.+
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 35677778889999999999999998887
No 354
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.89 E-value=0.0035 Score=58.04 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+|++||||||++++|.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367999999999999999998754
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.89 E-value=0.0043 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|.|++||||||+.+.|.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999986
No 356
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0043 Score=60.34 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-++|.+++|+|++||||||+.+.|.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999999986
No 357
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.004 Score=56.83 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+||+||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999883
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.84 E-value=0.0036 Score=60.74 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+||+||||||+++.|.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999853
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.83 E-value=0.0031 Score=63.70 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++++ +|++++++|+||+||||++..|++.. .+ ...++.++..++
T Consensus 93 i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~--~~~~v~l~~~d~ 136 (295)
T 1ls1_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KG--KGRRPLLVAADT 136 (295)
T ss_dssp CCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HH--TTCCEEEEECCS
T ss_pred eecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HH--cCCeEEEecCCc
Confidence 6666 89999999999999999999887431 11 124566665554
No 360
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.82 E-value=0.0043 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFR 117 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~ 117 (632)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998543
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.82 E-value=0.0041 Score=58.05 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.++.|+|++||||||+.+.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999985
No 362
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.79 E-value=0.0076 Score=62.94 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+ .+++|+|||||||||++..|.
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4556656 599999999999999999885
No 363
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.78 E-value=0.0045 Score=60.04 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHhCC-ceEEEEecCchH--HhhcCeEEEE
Q 047286 189 VDAQSERIVQAAMVKLVTN-QTVVIVANCLIT--IRNADCIIMV 229 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~~~-~tviiitH~~~~--~~~aD~i~vl 229 (632)
-+|..++.+.+.-+++.+. ..+|+.-.+... +..+|--++|
T Consensus 109 ~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pda~lkifl 152 (233)
T 3r20_A 109 AVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDADVKIFL 152 (233)
T ss_dssp TCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTTCSEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCCCCEEEEE
Confidence 4677777777777777665 678888877753 3456644444
No 364
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.77 E-value=0.0047 Score=57.12 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-.+++|+|++|||||||++.|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 365
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.77 E-value=0.0042 Score=58.08 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|+||||||||||++.|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999774
No 366
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.76 E-value=0.0034 Score=62.72 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHhhhcCCCh
Q 047286 508 VALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
++|+||+|||||||+++|.+.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 699999999999999999987654
No 367
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.73 E-value=0.0044 Score=59.35 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+++.|..+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999873
No 368
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.73 E-value=0.0022 Score=66.29 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=33.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+++++++|.+++|+|++|+|||||++.|.+... ....+++++..+|
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI----REGLKVAVIAVDP 94 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH----HTTCCEEEEEECC
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH----hcCCeEEEEeecC
Confidence 345567899999999999999999998863211 1134577776665
No 369
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.72 E-value=0.0045 Score=57.48 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 370
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.70 E-value=0.002 Score=70.67 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|+|+||||||||+++|.+.+.|
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 46799999999999999999987654
No 371
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.70 E-value=0.0029 Score=60.45 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.3
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
|.+..++.++|+||+||||||++..+.+
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455556779999999999999998876
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.69 E-value=0.0044 Score=61.06 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+||||||||||++.|.+-
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999988753
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.67 E-value=0.0048 Score=56.78 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999886
No 374
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.64 E-value=0.0061 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+..+.|+|++||||||+.+.|.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999985
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.64 E-value=0.0049 Score=57.20 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|+|++||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 376
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.64 E-value=0.0052 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998873
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.63 E-value=0.0046 Score=56.91 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+.+.|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 378
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.63 E-value=0.0031 Score=65.25 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=27.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.+.+|+.++|+||+|+|||||+++|.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 67789999999999999999999999886
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.62 E-value=0.0062 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|.|+.||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999999996
No 380
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.59 E-value=0.0059 Score=63.13 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+++.|.||+|||||||+..+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999998775
No 381
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.55 E-value=0.0061 Score=58.30 Aligned_cols=24 Identities=50% Similarity=0.516 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
++-+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 382
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.0056 Score=56.95 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988763
No 383
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.0057 Score=59.48 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|||++|+|||||++.|.+-.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999988753
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.52 E-value=0.006 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+|++||||||+++.|..-+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887643
No 385
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.51 E-value=0.0067 Score=57.07 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.|++||||||+.+.|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999999996
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.50 E-value=0.0064 Score=56.22 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++..+.|+|++||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 457789999999999999999986
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.48 E-value=0.0042 Score=59.26 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..+.|+|++||||||+++.|.+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3679999999999999999987665
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.47 E-value=0.007 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|.|. +..+|+||+|||||||+..|.
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHH
Confidence 46666 488999999999999998664
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.47 E-value=0.0072 Score=56.46 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.+++|+|++||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 457799999999999999999986
No 390
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.47 E-value=0.0057 Score=63.31 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|+|++|||||||++.|.+.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998753
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.47 E-value=0.0053 Score=60.27 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+.|+||+|||||||++++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998654
No 392
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.45 E-value=0.0071 Score=65.53 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| +.|+||+|+|||||+++|.+
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence 56678888 99999999999999999974
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.44 E-value=0.0038 Score=59.40 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.|++||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 394
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.44 E-value=0.0074 Score=57.23 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|.|+.||||||+.+.|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999999999985
No 395
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.44 E-value=0.0049 Score=60.70 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++..+.|+|++||||||+.+.|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999986
No 396
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.43 E-value=0.0073 Score=56.78 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+|++||||||+.+.|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 397
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.41 E-value=0.0067 Score=57.06 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+||+|.+||||||+.+.|...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988765
No 398
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.41 E-value=0.0078 Score=55.34 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.2
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.|.|++||||||+.+.|.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 399
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.38 E-value=0.0072 Score=59.54 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++|+||+|||||||.+.|.
T Consensus 2 ~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999886
No 400
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.38 E-value=0.008 Score=55.59 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|++|+|||||++.+.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999974
No 401
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.37 E-value=0.0075 Score=56.80 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||+++.|...+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998765
No 402
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.36 E-value=0.0078 Score=56.95 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|.|++||||||+.+.|.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999986
No 403
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.35 E-value=0.005 Score=64.58 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=24.5
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
-|.+.-+.++||||++|+|||||++.|.+
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34555556889999999999999999998
No 404
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.35 E-value=0.007 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 405
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.34 E-value=0.0071 Score=61.23 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999875
No 406
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.34 E-value=0.0076 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998753
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0075 Score=56.49 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+++.|...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 408
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.33 E-value=0.0084 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|.+++|.|+.||||||+.+.|.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999999985
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.33 E-value=0.0076 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||++..|.+.+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57999999999999998777643
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.30 E-value=0.0081 Score=55.23 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+|++||||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 411
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.29 E-value=0.0069 Score=60.88 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++..+.|.||+||||||+.+.|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999885
No 412
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.29 E-value=0.014 Score=62.12 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEEe
Q 047286 186 TNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
+++||+..+..+.+.|+++.. +.++|++||+...+..||+++++.
T Consensus 365 ~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 365 DAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp TTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 899999999999999998854 679999999988777899999986
No 413
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.29 E-value=0.0081 Score=55.98 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998875
No 414
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.28 E-value=0.0085 Score=55.49 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.27 E-value=0.0081 Score=56.16 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988764
No 416
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.26 E-value=0.0072 Score=68.93 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=43.2
Q ss_pred cEEE-eeEEEEEecCCCChHHHHHhhhcCCC-hhhhcHHHHHHHHHHHHhcCCCccCcccc--cC-CCCCChHHHHHHHH
Q 047286 501 DIVF-EHTVALVGENGNGKSTVISLAERFHN-PEQVIYSWIIIKCTNFIASLPQGSDLNVG--ER-GLQLSGGLKQRIAR 575 (632)
Q Consensus 501 ~I~f-~~~vaIVG~SGsGKSTL~~ll~r~y~-~~~~~~~~~~~~~~~~i~~lp~g~dt~vg--e~-G~~LSgGQrQRiai 575 (632)
+|.| ++.++|+||+||||||+++++.++.. ++.... +-.....+.-.+ .+-+.++ ++ -..+|+|++|++.+
T Consensus 571 disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vpa~~~~i~~v~-~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 571 DLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VPAEEAHLPLFD-GIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp EEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BSSSEEEECCCS-EEEEECCC------CCSHHHHHHHHH
T ss_pred eccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccCce---eehhccceeeHH-HhhccCCHHHHHHhcccHHHHHHHHH
Confidence 5666 67999999999999999999998653 211000 000000000011 1112222 11 13589999999999
Q ss_pred HHHH
Q 047286 576 TRAR 579 (632)
Q Consensus 576 ARA~ 579 (632)
|+++
T Consensus 647 a~il 650 (765)
T 1ewq_A 647 ALIL 650 (765)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 417
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.25 E-value=0.0074 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986543
No 418
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.25 E-value=0.0081 Score=55.89 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999999988765
No 419
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.25 E-value=0.021 Score=59.61 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEe
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
+|++||+..+..+.+.|.++.++.+++++||+++....||++++|+
T Consensus 314 p~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 314 PTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp TTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 4899999999999999998766679999999988656799999997
No 420
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.24 E-value=0.0069 Score=60.42 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+.|+||+|||||||+++|.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 79999999999999999998654
No 421
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.22 E-value=0.0083 Score=54.59 Aligned_cols=21 Identities=48% Similarity=0.485 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998876
No 422
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.0098 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+++|.|++||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999885
No 423
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.18 E-value=0.0086 Score=56.52 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|.|++||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999774
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.17 E-value=0.0081 Score=62.67 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.++|+||+|||||||+++|.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 366999999999999999998753
No 425
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.16 E-value=0.0092 Score=59.57 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=23.8
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
|.+..++.++|+||+|||||||+..+.+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4577777889999999999999987765
No 426
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.16 E-value=0.0091 Score=59.48 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|++||++|+|||||++.|++
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998765
No 427
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.0059 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|||++||||||++..|.+.+.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999887765
No 428
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.15 E-value=0.009 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999988763
No 429
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.14 E-value=0.009 Score=55.63 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998876
No 430
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.12 E-value=0.01 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999887643
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.12 E-value=0.0085 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998875
No 432
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.0091 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.+++|+|++||||||+.+.|.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 433
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.11 E-value=0.0091 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|..-
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999998743
No 434
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.11 E-value=0.01 Score=55.13 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.|.|++||||||+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 435
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.09 E-value=0.0096 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+++.|.+..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887643
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.09 E-value=0.0092 Score=58.60 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|||.|++||||||+.+.|...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 437
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.0097 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+.+.|..-
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 438
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.08 E-value=0.009 Score=55.34 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 439
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.08 E-value=0.01 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 440
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.07 E-value=0.008 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=16.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.++.|.|++||||||+.+.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999999985
No 441
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.06 E-value=0.01 Score=53.47 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998765
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.05 E-value=0.0061 Score=61.36 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=16.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|+|||||||+++.|..
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998775
No 443
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.05 E-value=0.01 Score=56.20 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999998875
No 444
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.02 E-value=0.0098 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|+|++||||||+.+.|..-+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57999999999999999887543
No 445
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.99 E-value=0.0074 Score=59.37 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+++.|.+.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 56999999999999999887644
No 446
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.97 E-value=0.01 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.|.+..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998864
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.96 E-value=0.012 Score=55.06 Aligned_cols=20 Identities=45% Similarity=0.652 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.|+.||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 448
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.94 E-value=0.012 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987764
No 449
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.93 E-value=0.011 Score=61.44 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=24.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
++++++ .++|+|++|||||||++.|.|..+
T Consensus 30 i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 30 LWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp --CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 666777 899999999999999999987544
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.93 E-value=0.012 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
No 451
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.93 E-value=0.011 Score=61.47 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|||++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 452
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.92 E-value=0.012 Score=58.49 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++|||||||++.|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 453
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.92 E-value=0.014 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|-+++|+|+.||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999999986
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.91 E-value=0.012 Score=58.94 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 455
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.012 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999988764
No 456
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.012 Score=54.75 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++++|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
No 457
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.90 E-value=0.016 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|++|+|||||++.|.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999986544
No 458
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.90 E-value=0.012 Score=55.76 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|.|++||||||+++.|..-+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999987643
No 459
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.89 E-value=0.01 Score=61.05 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+||+|+|||||++++.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999999999998865
No 460
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.013 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988775
No 461
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.88 E-value=0.013 Score=53.65 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=25.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.+++|+|++|||||||+..|... .. ....+++.+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~--l~--~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA--AV--REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--HH--HTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--hH--hcCCeeeEEEeCCC
Confidence 47899999999999999877521 00 11124777766653
No 462
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.86 E-value=0.013 Score=52.92 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999988754
No 463
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.86 E-value=0.013 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999997764
No 464
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.85 E-value=0.013 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.|.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988753
No 465
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.84 E-value=0.013 Score=55.67 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998875
No 466
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.84 E-value=0.01 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
.+.+|+.++++||+||||||++.+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 3567999999999999999988865
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.84 E-value=0.013 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999987754
No 468
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.83 E-value=0.013 Score=52.73 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
No 469
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.81 E-value=0.015 Score=56.05 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.+++|+|++||||||+.+.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 470
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.80 E-value=0.0051 Score=68.69 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+++|+.+.|+||||+|||||+++|.+.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 6777889999999999999999999999854
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.80 E-value=0.012 Score=60.20 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+||||||||||+..|..-+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 68999999999999998777543
No 472
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.80 E-value=0.013 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
No 473
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.79 E-value=0.017 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+-+++|+|+.||||||+.+.|.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999986
No 474
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.79 E-value=0.0094 Score=62.00 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++||||++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999886
No 475
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.77 E-value=0.013 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|..-
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988743
No 476
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.77 E-value=0.014 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999877653
No 477
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.75 E-value=0.014 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999977654
No 478
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.75 E-value=0.015 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6799999999999999988764
No 479
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.73 E-value=0.014 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|+.||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.73 E-value=0.014 Score=56.74 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|+|++||||||+.+.|.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999886
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.72 E-value=0.015 Score=63.94 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+|+.++|+||||+|||||+++|.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999999973
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.72 E-value=0.014 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999987764
No 483
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.71 E-value=0.014 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|.|+|++||||||+++.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988753
No 484
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.71 E-value=0.012 Score=60.36 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.3
Q ss_pred eeCCCE--EEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTT--VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~--~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+. ++|+|++||||||+.++|.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 445566 8999999999999999886
No 485
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.014 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999987764
No 486
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.68 E-value=0.014 Score=53.22 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
No 487
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.68 E-value=0.013 Score=58.87 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|||||||||+++.|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998864
No 488
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.67 E-value=0.015 Score=55.32 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|.||+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 489
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.67 E-value=0.015 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998764
No 490
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.64 E-value=0.018 Score=53.32 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+|+|||++|+|||||++.+.+-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999998876554
No 491
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.63 E-value=0.015 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987764
No 492
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.63 E-value=0.015 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.++.|+|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999985
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.63 E-value=0.016 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988764
No 494
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.62 E-value=0.016 Score=54.49 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998865
No 495
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.61 E-value=0.011 Score=62.49 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|||++|||||||++.|.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 47999999999999999999987
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|+|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.58 E-value=0.017 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999987763
No 498
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.58 E-value=0.019 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-++++|.|+.||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999985
No 499
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.57 E-value=0.012 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..++|.|++||||||++++|...+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999998887654
No 500
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.56 E-value=0.015 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999988753
Done!