Query 047287
Match_columns 210
No_of_seqs 200 out of 1379
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 7.5E-24 1.6E-28 161.0 11.8 82 44-125 16-97 (100)
2 KOG0014 MADS box transcription 98.7 5.2E-09 1.1E-13 86.9 2.0 116 3-118 51-190 (195)
3 cd00265 MADS_MEF2_like MEF2 (m 95.9 0.0059 1.3E-07 44.4 2.3 25 3-29 50-74 (77)
4 PF06005 DUF904: Protein of un 95.2 0.21 4.5E-06 36.1 8.2 48 74-126 1-48 (72)
5 PRK15422 septal ring assembly 88.3 3.3 7.2E-05 30.5 7.1 43 74-121 1-43 (79)
6 PF06698 DUF1192: Protein of u 86.5 1.1 2.3E-05 31.3 3.5 31 65-95 12-42 (59)
7 PRK13169 DNA replication intia 85.0 7 0.00015 30.4 7.9 46 76-126 7-52 (110)
8 PF06156 DUF972: Protein of un 83.0 9.6 0.00021 29.4 7.8 46 76-126 7-52 (107)
9 COG3074 Uncharacterized protei 82.6 14 0.0003 26.8 7.9 40 74-118 1-40 (79)
10 PF01166 TSC22: TSC-22/dip/bun 80.8 4.1 8.9E-05 28.3 4.5 27 99-125 17-43 (59)
11 cd07429 Cby_like Chibby, a nuc 80.4 2.5 5.4E-05 32.9 3.7 23 104-126 73-95 (108)
12 PF07106 TBPIP: Tat binding pr 77.9 16 0.00034 29.8 8.0 51 46-97 115-165 (169)
13 PRK10884 SH3 domain-containing 77.4 45 0.00098 28.6 11.0 75 46-125 92-168 (206)
14 COG2433 Uncharacterized conser 75.3 44 0.00094 33.4 11.3 85 44-130 419-508 (652)
15 smart00338 BRLZ basic region l 73.0 18 0.00039 24.8 6.1 38 88-129 15-52 (65)
16 PF07716 bZIP_2: Basic region 72.3 23 0.00049 23.5 6.3 37 88-128 14-50 (54)
17 PF00170 bZIP_1: bZIP transcri 72.0 21 0.00045 24.4 6.2 37 89-129 16-52 (64)
18 PF06156 DUF972: Protein of un 67.6 35 0.00075 26.3 7.2 36 95-130 14-49 (107)
19 PF10211 Ax_dynein_light: Axon 64.7 55 0.0012 27.5 8.5 57 49-111 122-178 (189)
20 TIGR02449 conserved hypothetic 64.3 49 0.0011 23.5 7.1 48 78-125 1-50 (65)
21 PF08317 Spc7: Spc7 kinetochor 64.2 1.1E+02 0.0024 27.6 12.1 78 51-128 181-262 (325)
22 PF04849 HAP1_N: HAP1 N-termin 64.1 92 0.002 28.5 10.3 54 77-130 97-187 (306)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 64.0 69 0.0015 25.1 10.4 48 78-125 74-127 (132)
24 smart00787 Spc7 Spc7 kinetocho 62.1 1.2E+02 0.0027 27.5 10.8 76 51-126 176-255 (312)
25 KOG4797 Transcriptional regula 61.4 41 0.00089 26.4 6.5 42 81-125 45-89 (123)
26 COG4467 Regulator of replicati 58.4 64 0.0014 25.2 7.1 46 76-126 7-52 (114)
27 PF10504 DUF2452: Protein of u 58.2 52 0.0011 27.3 7.0 43 75-117 28-73 (159)
28 KOG0971 Microtubule-associated 58.1 2.6E+02 0.0056 29.8 13.5 50 44-94 329-388 (1243)
29 PRK10884 SH3 domain-containing 57.7 76 0.0017 27.2 8.3 15 50-64 89-103 (206)
30 KOG0709 CREB/ATF family transc 57.4 19 0.00041 34.6 4.9 67 62-130 224-313 (472)
31 PRK11637 AmiB activator; Provi 57.3 1.7E+02 0.0036 27.4 11.4 67 44-119 51-119 (428)
32 TIGR02338 gimC_beta prefoldin, 56.9 84 0.0018 23.8 8.0 43 82-125 61-103 (110)
33 KOG4797 Transcriptional regula 56.8 21 0.00046 28.0 4.2 28 98-125 69-96 (123)
34 cd00266 MADS_SRF_like SRF-like 56.0 7.4 0.00016 28.4 1.6 24 3-27 50-73 (83)
35 KOG0804 Cytoplasmic Zn-finger 55.3 52 0.0011 31.8 7.3 50 76-125 360-411 (493)
36 KOG3759 Uncharacterized RUN do 54.2 2.2E+02 0.0048 27.9 11.6 51 68-125 196-249 (621)
37 PF13758 Prefoldin_3: Prefoldi 53.9 33 0.00072 26.3 4.9 17 43-59 8-24 (99)
38 PF10226 DUF2216: Uncharacteri 53.9 68 0.0015 27.5 7.2 32 95-126 47-78 (195)
39 smart00340 HALZ homeobox assoc 53.5 32 0.00068 22.5 4.0 26 106-131 8-33 (44)
40 PF09789 DUF2353: Uncharacteri 52.6 1.5E+02 0.0033 27.2 9.8 78 49-131 32-114 (319)
41 PRK13169 DNA replication intia 52.3 49 0.0011 25.7 5.7 41 89-130 9-49 (110)
42 PRK00888 ftsB cell division pr 48.4 57 0.0012 24.9 5.5 34 97-130 28-61 (105)
43 PF15254 CCDC14: Coiled-coil d 48.2 1.3E+02 0.0027 31.1 9.1 78 44-126 391-478 (861)
44 PF04899 MbeD_MobD: MbeD/MobD 47.1 1E+02 0.0023 22.0 7.8 46 81-126 3-51 (70)
45 PF14645 Chibby: Chibby family 46.0 31 0.00067 27.0 3.7 25 103-127 71-95 (116)
46 PF06005 DUF904: Protein of un 42.7 85 0.0018 22.5 5.3 35 95-129 10-44 (72)
47 PF02151 UVR: UvrB/uvrC motif; 42.4 69 0.0015 19.5 4.2 34 77-110 2-35 (36)
48 PRK09343 prefoldin subunit bet 41.1 1.7E+02 0.0037 22.7 8.2 75 45-126 19-108 (121)
49 PRK13729 conjugal transfer pil 41.0 90 0.0019 30.3 6.7 28 99-126 93-120 (475)
50 PF05529 Bap31: B-cell recepto 40.8 1.9E+02 0.0041 23.8 8.0 50 76-125 124-183 (192)
51 KOG1962 B-cell receptor-associ 40.7 1.8E+02 0.0038 25.4 7.9 50 76-125 157-208 (216)
52 PF04977 DivIC: Septum formati 38.4 1.1E+02 0.0025 20.9 5.4 30 100-129 21-50 (80)
53 TIGR03185 DNA_S_dndD DNA sulfu 37.7 1.7E+02 0.0036 29.0 8.3 23 46-68 397-419 (650)
54 KOG2751 Beclin-like protein [S 37.5 2.8E+02 0.006 26.7 9.2 28 76-103 199-226 (447)
55 PF04508 Pox_A_type_inc: Viral 37.2 44 0.00096 19.0 2.4 16 48-63 2-17 (23)
56 KOG0963 Transcription factor/C 37.1 2.9E+02 0.0063 27.8 9.6 83 47-129 121-208 (629)
57 PF15397 DUF4618: Domain of un 36.0 3E+02 0.0066 24.5 8.8 35 95-129 185-219 (258)
58 PF14662 CCDC155: Coiled-coil 35.0 2.9E+02 0.0063 23.7 11.3 23 44-66 19-41 (193)
59 PF12537 DUF3735: Protein of u 34.8 67 0.0015 22.7 3.7 25 76-100 47-71 (72)
60 KOG4643 Uncharacterized coiled 34.7 1.8E+02 0.0039 31.1 7.9 86 45-130 203-291 (1195)
61 TIGR02976 phageshock_pspB phag 33.8 1.4E+02 0.003 21.7 5.2 44 19-63 22-65 (75)
62 PF10186 Atg14: UV radiation r 33.7 3E+02 0.0066 23.5 11.0 24 45-68 25-48 (302)
63 PF07888 CALCOCO1: Calcium bin 33.6 4.9E+02 0.011 25.8 11.2 23 103-125 213-235 (546)
64 PRK09413 IS2 repressor TnpA; R 33.4 2.1E+02 0.0045 21.9 6.6 26 100-125 75-100 (121)
65 PRK09039 hypothetical protein; 33.0 3.9E+02 0.0084 24.5 9.4 46 46-112 136-181 (343)
66 TIGR02209 ftsL_broad cell divi 32.7 1.5E+02 0.0032 20.9 5.3 33 97-129 25-57 (85)
67 KOG4643 Uncharacterized coiled 32.1 5.9E+02 0.013 27.4 11.1 78 45-131 479-558 (1195)
68 PF03980 Nnf1: Nnf1 ; InterPr 30.7 1.8E+02 0.0039 21.7 5.8 34 93-126 70-103 (109)
69 PF08946 Osmo_CC: Osmosensory 30.5 1.3E+02 0.0027 20.0 4.1 24 97-120 20-43 (46)
70 PLN02372 violaxanthin de-epoxi 30.4 4.6E+02 0.01 25.2 9.4 43 49-103 363-405 (455)
71 PF15243 ANAPC15: Anaphase-pro 30.3 61 0.0013 24.5 3.0 24 77-100 28-51 (92)
72 PF04645 DUF603: Protein of un 30.2 3.4E+02 0.0074 23.0 8.4 57 64-121 100-156 (181)
73 PF09744 Jnk-SapK_ap_N: JNK_SA 30.0 3.1E+02 0.0068 22.5 10.3 27 100-126 86-112 (158)
74 KOG3119 Basic region leucine z 28.3 2.6E+02 0.0056 24.8 7.1 40 87-130 203-242 (269)
75 PF06667 PspB: Phage shock pro 27.7 2.1E+02 0.0045 20.8 5.3 20 44-63 46-65 (75)
76 COG4026 Uncharacterized protei 27.7 4.4E+02 0.0095 23.5 8.2 57 67-126 96-158 (290)
77 KOG4005 Transcription factor X 27.6 4.5E+02 0.0098 23.5 8.3 55 71-126 61-120 (292)
78 PF14257 DUF4349: Domain of un 27.3 2.7E+02 0.0058 24.1 7.0 45 44-88 129-173 (262)
79 PF04999 FtsL: Cell division p 26.8 2E+02 0.0043 20.9 5.3 33 97-129 36-68 (97)
80 PF09798 LCD1: DNA damage chec 26.5 2.6E+02 0.0056 28.3 7.4 49 78-126 5-56 (654)
81 PLN02320 seryl-tRNA synthetase 26.2 6.3E+02 0.014 24.7 11.2 49 48-100 68-119 (502)
82 KOG2417 Predicted G-protein co 25.4 5.5E+02 0.012 24.5 8.8 33 73-105 182-214 (462)
83 KOG0930 Guanine nucleotide exc 25.1 2.1E+02 0.0045 26.4 5.9 38 72-118 9-46 (395)
84 PF07798 DUF1640: Protein of u 24.4 4E+02 0.0086 21.8 8.0 52 74-125 44-95 (177)
85 PHA03162 hypothetical protein; 24.4 1.1E+02 0.0024 24.7 3.6 22 105-126 15-36 (135)
86 TIGR00012 L29 ribosomal protei 24.4 1.3E+02 0.0028 20.1 3.5 27 70-96 1-27 (55)
87 cd07597 BAR_SNX8 The Bin/Amphi 24.0 2.3E+02 0.005 24.6 5.9 60 15-94 131-190 (246)
88 COG4467 Regulator of replicati 23.9 1.3E+02 0.0028 23.6 3.8 30 101-130 20-49 (114)
89 PHA02109 hypothetical protein 23.9 2.2E+02 0.0048 24.3 5.5 43 62-116 176-220 (233)
90 PF04880 NUDE_C: NUDE protein, 23.9 1.6E+02 0.0034 24.6 4.6 38 79-125 2-39 (166)
91 PF05130 FlgN: FlgN protein; 23.6 2.7E+02 0.0059 20.6 5.7 17 109-125 97-113 (143)
92 TIGR02894 DNA_bind_RsfA transc 23.5 4.4E+02 0.0094 22.0 11.8 57 71-127 77-135 (161)
93 PF13094 CENP-Q: CENP-Q, a CEN 23.4 3.9E+02 0.0084 21.3 7.7 27 100-126 59-85 (160)
94 PF15619 Lebercilin: Ciliary p 23.2 4.3E+02 0.0094 22.3 7.3 18 77-94 125-142 (194)
95 PF01093 Clusterin: Clusterin; 23.0 2.3E+02 0.005 27.2 6.1 56 69-125 1-66 (436)
96 PF10267 Tmemb_cc2: Predicted 22.7 3.2E+02 0.0069 25.9 7.0 62 44-114 8-73 (395)
97 cd00632 Prefoldin_beta Prefold 22.7 3.3E+02 0.0071 20.2 7.0 69 46-125 29-99 (105)
98 PRK11239 hypothetical protein; 22.6 1.4E+02 0.0031 26.0 4.2 24 2-26 120-143 (215)
99 TIGR03545 conserved hypothetic 22.6 5.9E+02 0.013 25.1 9.0 52 44-97 179-232 (555)
100 PF06721 DUF1204: Protein of u 21.9 5.2E+02 0.011 22.3 9.2 56 45-101 13-74 (228)
101 PF04849 HAP1_N: HAP1 N-termin 21.4 6.2E+02 0.014 23.2 8.3 26 101-126 239-264 (306)
102 COG0216 PrfA Protein chain rel 20.9 7E+02 0.015 23.4 10.0 91 15-122 8-102 (363)
103 PF06937 EURL: EURL protein; 20.9 1.2E+02 0.0025 27.5 3.4 36 58-93 203-238 (285)
104 TIGR00606 rad50 rad50. This fa 20.8 1.1E+03 0.023 25.6 11.3 77 46-126 798-880 (1311)
105 smart00030 CLb CLUSTERIN Beta 20.8 3.2E+02 0.0069 23.6 6.0 56 69-125 7-72 (206)
106 cd04769 HTH_MerR2 Helix-Turn-H 20.7 3.8E+02 0.0082 20.2 6.3 13 73-85 56-68 (116)
107 KOG2370 Cactin [Signal transdu 20.7 3.2E+02 0.007 26.9 6.5 19 71-89 287-305 (623)
108 smart00338 BRLZ basic region l 20.5 2.8E+02 0.0061 18.6 5.1 29 97-125 34-62 (65)
109 TIGR03752 conj_TIGR03752 integ 20.4 8.1E+02 0.017 23.9 10.6 69 45-126 71-139 (472)
110 COG5420 Uncharacterized conser 20.3 2E+02 0.0043 20.5 3.9 31 99-129 2-32 (71)
111 PF11917 DUF3435: Protein of u 20.2 4.9E+02 0.011 24.2 7.7 60 46-109 287-346 (418)
112 PF12761 End3: Actin cytoskele 20.2 3.8E+02 0.0082 23.0 6.3 17 45-61 101-117 (195)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.91 E-value=7.5e-24 Score=160.97 Aligned_cols=82 Identities=43% Similarity=0.667 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
.|+.|+.+|+.+++.|+..+||++||||++||++||++||++|+.||++||+||+++|.++|+.|++|++.|.++|..|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 047287 124 QR 125 (210)
Q Consensus 124 ~k 125 (210)
.+
T Consensus 96 ~~ 97 (100)
T PF01486_consen 96 QK 97 (100)
T ss_pred HH
Confidence 99
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=98.71 E-value=5.2e-09 Score=86.88 Aligned_cols=116 Identities=30% Similarity=0.271 Sum_probs=86.3
Q ss_pred cCccccccCCCCCHHHHHHHHhhhhCCCCCCCCchHHH----------------HH---HHHHHHHHHHHHHHHHHHHH-
Q 047287 3 SFSLITPCENLISMVKTLERYQKCNYGAPEPNVSAREA----------------LE---LSSQQEYLKLKARYEALQRS- 62 (210)
Q Consensus 3 sGKLyEfsS~s~Sm~kiLeRY~k~s~~~~~~~~~~~e~----------------~~---~~~~~E~~kLk~~ie~Lq~~- 62 (210)
+||||+|++++.+|..+++||...............+. .+ +.+..+...++..++.|+..
T Consensus 51 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (195)
T KOG0014|consen 51 SGKLYEFGSSDESVDAVVDRFLNLTEPSRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLE 130 (195)
T ss_pred CCCccccCCcchhHHHHHHHHHhhhhhhhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhH
Confidence 69999999885349999999987655421111001110 00 12456667788888887754
Q ss_pred --hhhhhcCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 047287 63 --QRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLT-ELQHKEQLLSEA 118 (210)
Q Consensus 63 --~R~l~GEdL~~Ls~-~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~-~LqkKe~~L~ee 118 (210)
+|+++|++|.++++ ++|..+|.+|+.++..+|..+...+.+++. .++.++..+.+.
T Consensus 131 ~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
T KOG0014|consen 131 LEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAE 190 (195)
T ss_pred HHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence 99999999999999 999999999999999999999999998887 666665555443
No 3
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=95.88 E-value=0.0059 Score=44.40 Aligned_cols=25 Identities=40% Similarity=0.331 Sum_probs=22.3
Q ss_pred cCccccccCCCCCHHHHHHHHhhhhCC
Q 047287 3 SFSLITPCENLISMVKTLERYQKCNYG 29 (210)
Q Consensus 3 sGKLyEfsS~s~Sm~kiLeRY~k~s~~ 29 (210)
+|++|+|+|+ |+..||+||.++++.
T Consensus 50 ~gk~~~f~s~--s~~~vl~ry~~~~~~ 74 (77)
T cd00265 50 SGKLYEFSSP--SMEKIIERYQKTSGS 74 (77)
T ss_pred CCceEEecCC--CHHHHHHHHHhcccc
Confidence 6999999998 689999999998764
No 4
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.17 E-value=0.21 Score=36.08 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
+|+..|.+||.++..|+..|.. +..++++|+.+-..|.++|..|+...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5789999999999999999954 45556788888666666666666663
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.27 E-value=3.3 Score=30.47 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKT 121 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 121 (210)
+|++=|.+||..+..|+.-| .++.-+|++|+.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999888 56666778888776666665444
No 6
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.50 E-value=1.1 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=23.9
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047287 65 NLLGEELGPLNSKELESLERQLDMSLKQIRS 95 (210)
Q Consensus 65 ~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRs 95 (210)
+.+|+||+.||+.||..==..|+.=+.++|+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998766666655555543
No 7
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.00 E-value=7 Score=30.43 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
++-|.+||+++..-+..|..-|.++ .+|-..-..|+-+|..||+++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999988888877666554 356666677777788888884
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.99 E-value=9.6 Score=29.43 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
++.|.+||++|..-+..|..-|.++ ..|-..-..|.-+|..||..+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888877776665555443 344444555566666666663
No 9
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.64 E-value=14 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEA 118 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ee 118 (210)
+|++=|.+||..+..|+.-| .++.-+|++|+.|...|..+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHH
Confidence 57888999999999999887 56666777777765544333
No 10
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.79 E-value=4.1 Score=28.35 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 99 QYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 99 qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.+.++|.+|..+...|+.+|..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788899999999999999999887
No 11
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=80.39 E-value=2.5 Score=32.89 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047287 104 TLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 104 qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.+..|+||.+.|+|||+.|+-|+
T Consensus 73 e~~rlkkk~~~LeEENNlLklKi 95 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKI 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578889999999999999995
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.91 E-value=16 Score=29.80 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTR 97 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK 97 (210)
...+..|+.+++.|+..+..+-+ +-...+.+|...++.......+..|.||
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444 3333555555555555555555555444
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.41 E-value=45 Score=28.56 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIR--STRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR--srK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
...+.+|.++++.|+....++-++ .-.....|.+.++.+-..|- ...++-+.+++..++.+...|..+|..++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT-----WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666555554433 11334444444444333333 33344445555555555555555555555
Q ss_pred HH
Q 047287 124 QR 125 (210)
Q Consensus 124 ~k 125 (210)
+.
T Consensus 167 ~~ 168 (206)
T PRK10884 167 RT 168 (206)
T ss_pred HH
Confidence 54
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.33 E-value=44 Score=33.41 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIR-----STRTQYMLDTLTELQHKEQLLSEA 118 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR-----srK~qlm~~qi~~LqkKe~~L~ee 118 (210)
....++.++...++.|+...++|-.+ +..|- +++..||.+|+..-++++ .|+-+.+...|..|+++-..-...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777776666553 11111 888999999999888877 456677888888888876655555
Q ss_pred HHHHHHHHhhhh
Q 047287 119 NKTLKQRTMTLR 130 (210)
Q Consensus 119 N~~L~~k~~~~~ 130 (210)
-..|..++..+.
T Consensus 497 ve~L~~~l~~l~ 508 (652)
T COG2433 497 VEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHH
Confidence 566666654433
No 15
>smart00338 BRLZ basic region leucin zipper.
Probab=73.00 E-value=18 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 88 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 88 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
.|..+-|.||.+.+ ..|..+...|..+|..|+.++..+
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788877754 688888888999999998886444
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.26 E-value=23 Score=23.52 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 88 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 88 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
.|..+-|.||.+.+ ..|..+...|..+|..|+.++..
T Consensus 14 ~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 14 EAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777655 67888888889999999888543
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.99 E-value=21 Score=24.42 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|-++.|.||.+.| ..|..+...|..+|..|...+..+
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887765 678888888888888888775433
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.63 E-value=35 Score=26.34 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 95 STRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 95 srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
+.....|.++|..|++....|.|+|..|+.....++
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999976665
No 19
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.66 E-value=55 Score=27.50 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 49 YLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 111 (210)
Q Consensus 49 ~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkK 111 (210)
...+..+|..|+...+.|..+ +.+|..--..++......+....+...++|+.|++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~------~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQ------VQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655544331 223333333333333334444455555566555543
No 20
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.29 E-value=49 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 78 ELESLERQLDMSLKQIRSTR--TQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 78 EL~~LE~qLe~sL~~IRsrK--~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
||+.||.+|+.=|.....-| +.++.+++..++..-..|.+.|..=+.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999998887765433 2344455555544444444444444444
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.23 E-value=1.1e+02 Score=27.60 Aligned_cols=78 Identities=27% Similarity=0.388 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 51 KLKARYEALQRSQRNLLG--EELGPLNSKELESLERQLDMSLKQIRSTRTQYM--LDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 51 kLk~~ie~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
+|+++...|+...+.+.- .+++.++..+|..|-..|...-..|.++|..+- ..++..++.+...+.++-..+...+
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444433 448999999999999999998888887777753 4666666666666666666666665
Q ss_pred hh
Q 047287 127 MT 128 (210)
Q Consensus 127 ~~ 128 (210)
.+
T Consensus 261 ~e 262 (325)
T PF08317_consen 261 AE 262 (325)
T ss_pred HH
Confidence 44
No 22
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.06 E-value=92 Score=28.49 Aligned_cols=54 Identities=31% Similarity=0.434 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 047287 77 KELESLERQLDMSLKQIR------STRTQYML-------------------------------DTLTELQHKEQLLSEAN 119 (210)
Q Consensus 77 ~EL~~LE~qLe~sL~~IR------srK~qlm~-------------------------------~qi~~LqkKe~~L~eeN 119 (210)
.....||.+|..++..|. +.|++++. -+++.|++|-+.|.++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 677889999999988887 45555532 23588999999999999
Q ss_pred HHHHHHHhhhh
Q 047287 120 KTLKQRTMTLR 130 (210)
Q Consensus 120 ~~L~~k~~~~~ 130 (210)
..||.+...+.
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99999965554
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.96 E-value=69 Score=25.09 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 78 ELESLERQLDMSLKQIRSTR------TQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 78 EL~~LE~qLe~sL~~IRsrK------~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
++..|...++.+-..+...+ ...+..+|+.++++-..|..+|+.|..+
T Consensus 74 ~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 74 EINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444222 3467789999999999999999999988
No 24
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.12 E-value=1.2e+02 Score=27.53 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhhhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 51 KLKARYEALQRSQRNLLG--EELGPLNSKELESLERQLDMSLKQIRSTRTQYM--LDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 51 kLk~~ie~Lq~~~R~l~G--EdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.|+.+...|+...+++.- ++++.++.+||..|-..|..-...|..++.++. .+++..+..+.....+.-..+...+
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666543 678899999999999999998888877776643 3555555555555555555555553
No 25
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.37 E-value=41 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.446 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 047287 81 SLERQLDMSLKQIRSTRTQYML---DTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 81 ~LE~qLe~sL~~IRsrK~qlm~---~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
.+...+|.|+.-| |+.||+ ++++-||.+.+.|.+.|..|+.+
T Consensus 45 aIDNKIeQAMDLV---KtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLV---KTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766 555554 56666666666666666666655
No 26
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=58.42 E-value=64 Score=25.25 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
++.+.+||++|-.-++.|-.-|.++ .+|-..-..|+=+|..||+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHh
Confidence 4667889999988888776655543 344444556666777777773
No 27
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=58.20 E-value=52 Score=27.30 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 047287 75 NSKELESLERQLDMSLKQIRS---TRTQYMLDTLTELQHKEQLLSE 117 (210)
Q Consensus 75 s~~EL~~LE~qLe~sL~~IRs---rK~qlm~~qi~~LqkKe~~L~e 117 (210)
+..||..|=++++.|..-||. .|-.+|.+||..|++.-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998885 4777899999999887655544
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.13 E-value=2.6e+02 Score=29.77 Aligned_cols=50 Identities=32% Similarity=0.383 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HhhhhhcCCCCCCCHHHHHHHHHH---HHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQR-------SQRNLLGEELGPLNSKELESLERQ---LDMSLKQIR 94 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~-------~~R~l~GEdL~~Ls~~EL~~LE~q---Le~sL~~IR 94 (210)
.++.|+..++.+++.|+. .+-+ -|-|-...|--++.+||+| |..+|-+.|
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888865543 3322 2778888899999999987 556777777
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.69 E-value=76 Score=27.16 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhh
Q 047287 50 LKLKARYEALQRSQR 64 (210)
Q Consensus 50 ~kLk~~ie~Lq~~~R 64 (210)
..++.++..|++.+-
T Consensus 89 p~~~~rlp~le~el~ 103 (206)
T PRK10884 89 PSLRTRVPDLENQVK 103 (206)
T ss_pred ccHHHHHHHHHHHHH
Confidence 356777777775443
No 30
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=57.41 E-value=19 Score=34.63 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=41.5
Q ss_pred HhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH-----------HHHHHHHHHHHHHHH
Q 047287 62 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRST------------RTQYMLD-----------TLTELQHKEQLLSEA 118 (210)
Q Consensus 62 ~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsr------------K~qlm~~-----------qi~~LqkKe~~L~ee 118 (210)
..+.+++ -++.++.+.--|=+-=|.+|++||.+ |.+-..+ +-.+|++|...|..+
T Consensus 224 eEkrLL~--kEG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~ 301 (472)
T KOG0709|consen 224 EEKRLLT--KEGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELS 301 (472)
T ss_pred HHHHHHH--hccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhc
Confidence 3344444 23556666666666667788888732 2222222 235678888888888
Q ss_pred HHHHHHHHhhhh
Q 047287 119 NKTLKQRTMTLR 130 (210)
Q Consensus 119 N~~L~~k~~~~~ 130 (210)
|..|-.+++.++
T Consensus 302 N~sLl~qL~klQ 313 (472)
T KOG0709|consen 302 NRSLLAQLKKLQ 313 (472)
T ss_pred cHHHHHHHHHHH
Confidence 888888876655
No 31
>PRK11637 AmiB activator; Provisional
Probab=57.34 E-value=1.7e+02 Score=27.35 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQ--YMLDTLTELQHKEQLLSEAN 119 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~q--lm~~qi~~LqkKe~~L~eeN 119 (210)
....++..+.+++..++..++.+ .++|..|+.+|+..-.+|+....+ .+..+|..++++...++++-
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666653 345777788777777777655444 44556666655544444443
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.89 E-value=84 Score=23.79 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 82 LERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 82 LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+++..+.++..+..|+..+ ...|..|.++...|.+.=..++.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777776555444 677777777777777766666666
No 33
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=56.78 E-value=21 Score=27.97 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 98 TQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 98 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
-+.+.++|.+|-.+...|+++|..|+.-
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999876
No 34
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=56.03 E-value=7.4 Score=28.42 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.0
Q ss_pred cCccccccCCCCCHHHHHHHHhhhh
Q 047287 3 SFSLITPCENLISMVKTLERYQKCN 27 (210)
Q Consensus 3 sGKLyEfsS~s~Sm~kiLeRY~k~s 27 (210)
+|++|+|++++ ++..+|+||....
T Consensus 50 ~~~~~~~~~~~-~~~~~l~~~~~~~ 73 (83)
T cd00266 50 SGKLYVFWPSS-EVEGVISRFEVLS 73 (83)
T ss_pred CCCcceecCcH-HHHHHHHHHhhcC
Confidence 68999999875 4999999997654
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.26 E-value=52 Score=31.77 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDM--SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 76 ~~EL~~LE~qLe~--sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.|..+|++.+.. +.++|-.+|-+.+...+..+++....+.|.|+.|++-
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555444 5667778888999999999999999999999988764
No 36
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=54.20 E-value=2.2e+02 Score=27.87 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=33.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 68 GEELGPLNSKELESLERQLDMSLKQIR---STRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 68 GEdL~~Ls~~EL~~LE~qLe~sL~~IR---srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
-=||+.||.+||. +|++.|++++- .-|.|+. +.|+-....|..=-++|+..
T Consensus 196 nl~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV----~QLkTQItDLErFInFlQ~e 249 (621)
T KOG3759|consen 196 NLDIDKLSTEELR---RQVDDALKQLVNPFKEKEQLV----DQLKTQITDLERFINFLQDE 249 (621)
T ss_pred cCCcccccHHHHH---HHHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3458889888765 69999999975 3455553 44555555555555666666
No 37
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=53.92 E-value=33 Score=26.30 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047287 43 LSSQQEYLKLKARYEAL 59 (210)
Q Consensus 43 ~~~~~E~~kLk~~ie~L 59 (210)
+-|..||.-||.+|+.|
T Consensus 8 q~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37899999999999888
No 38
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=53.86 E-value=68 Score=27.46 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 95 STRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 95 srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.|+-|....+|..||.--+.|+++|..|+.-+
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667666667777777776543
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=53.49 E-value=32 Score=22.52 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047287 106 TELQHKEQLLSEANKTLKQRTMTLRH 131 (210)
Q Consensus 106 ~~LqkKe~~L~eeN~~L~~k~~~~~~ 131 (210)
+.|++==..|.++|+.|++.+.++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778899999999999766653
No 40
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=52.59 E-value=1.5e+02 Score=27.21 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhhhh-----cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 49 YLKLKARYEALQRSQRNLL-----GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 49 ~~kLk~~ie~Lq~~~R~l~-----GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
+..|+.+...|++..+-+. +.|......++=..| -.-|...|.+ +.-+..++..|++|-..++..++.||
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~L----a~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNL----AQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 4456666666777776666 333333333333333 3334555544 44567788999999999999999999
Q ss_pred HHHhhhhh
Q 047287 124 QRTMTLRH 131 (210)
Q Consensus 124 ~k~~~~~~ 131 (210)
.++..++.
T Consensus 107 ~~la~~r~ 114 (319)
T PF09789_consen 107 EKLARQRV 114 (319)
T ss_pred HHHHhhhh
Confidence 99766553
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.29 E-value=49 Score=25.73 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
++..+ +.....|.++|..|+.....|.|+|..|+.....++
T Consensus 9 ~l~~l-e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 9 ALDDL-EQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 334566789999999999999999999999976665
No 42
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.43 E-value=57 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
+...+..++..++++...|+.+|..|+.++..+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777888888888888888888876554
No 43
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.23 E-value=1.3e+02 Score=31.15 Aligned_cols=78 Identities=27% Similarity=0.281 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-cC--------CCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLL-GE--------ELGPLNSKEL-ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQ 113 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~-GE--------dL~~Ls~~EL-~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~ 113 (210)
-++.|.+.|+.++.+|...+|--- .+ +++-+++.-| ..|+.||..+++.. +++...-++|-|-..
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneellk~~e 465 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELLKVIE 465 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHHH
Confidence 677888888888888877766521 11 3444444444 24677777776654 233444445555555
Q ss_pred HHHHHHHHHHHHH
Q 047287 114 LLSEANKTLKQRT 126 (210)
Q Consensus 114 ~L~eeN~~L~~k~ 126 (210)
.+.++|+.|++.+
T Consensus 466 ~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 466 NQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665553
No 44
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.09 E-value=1e+02 Score=22.00 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 81 SLERQLDMSLKQIR---STRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 81 ~LE~qLe~sL~~IR---srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.||.+|-.||..+- +++-+-.......|+..-..-..+|..|+.++
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv 51 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQV 51 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 58899998887764 56677777777888766555555555555553
No 45
>PF14645 Chibby: Chibby family
Probab=46.01 E-value=31 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047287 103 DTLTELQHKEQLLSEANKTLKQRTM 127 (210)
Q Consensus 103 ~qi~~LqkKe~~L~eeN~~L~~k~~ 127 (210)
.....++++.+.|+|||+.|+-|+.
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999853
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.70 E-value=85 Score=22.47 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 95 STRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 95 srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
..|.+-..+.|..|+.+...|.++|..|.....++
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45777788999999999999999999998774333
No 47
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=42.36 E-value=69 Score=19.53 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 77 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 110 (210)
Q Consensus 77 ~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~Lqk 110 (210)
+.+..|+..++.|...-+--+.-.+.++|..|++
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 3577888899999888888888888888888765
No 48
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.12 E-value=1.7e+02 Score=22.71 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLE---------------RQLDMSLKQIRSTRTQYMLDTLTELQ 109 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE---------------~qLe~sL~~IRsrK~qlm~~qi~~Lq 109 (210)
.+.++..+..+...|+...|.. .+.++||..|+ ...+.+...|.. |-+.+...|..|.
T Consensus 19 lq~~l~~~~~q~~~le~q~~e~------~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~-r~E~ie~~ik~le 91 (121)
T PRK09343 19 LQQQLERLLQQKSQIDLELREI------NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKE-RKELLELRSRTLE 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444555555555555555432 23445555544 233444444433 3345557777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047287 110 HKEQLLSEANKTLKQRT 126 (210)
Q Consensus 110 kKe~~L~eeN~~L~~k~ 126 (210)
+++..|++.=..++.++
T Consensus 92 kq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 92 KQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666663
No 49
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.97 E-value=90 Score=30.28 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 99 QYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 99 qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
++|..+..++++|.+.|..+|..|+.++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4666777888899999999999999994
No 50
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.82 E-value=1.9e+02 Score=23.79 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRS----------TRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRs----------rK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.+|..+|..++.+-++..+ .+..-..++|+.|+++-.....+...|+++
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777776666542 234456677888887777777777777777
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.72 E-value=1.8e+02 Score=25.37 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIR--STRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IR--srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
..|+..||..|+.--+..- ..|...|..|.+.+++.-..|.|+|..|+.+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4567777777766555433 3344456677777777777888888888888
No 52
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.43 E-value=1.1e+02 Score=20.92 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
-+..++..|+++...+..+|..|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677889999999999999999986544
No 53
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.66 E-value=1.7e+02 Score=29.01 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 047287 46 QQEYLKLKARYEALQRSQRNLLG 68 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~G 68 (210)
..++.++..+++.+.+.++..-.
T Consensus 397 ~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 397 LKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555555555555554444
No 54
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=37.54 E-value=2.8e+02 Score=26.73 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQYMLD 103 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~ 103 (210)
+++|..=|.+|+..|...+++|.++..+
T Consensus 199 lk~le~~~~~l~~~l~e~~~~~~~~~e~ 226 (447)
T KOG2751|consen 199 LEELEKEEAELDHQLKELEFKAERLNEE 226 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777777766543
No 55
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.16 E-value=44 Score=18.98 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 047287 48 EYLKLKARYEALQRSQ 63 (210)
Q Consensus 48 E~~kLk~~ie~Lq~~~ 63 (210)
|+.+||.+|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677888888777654
No 56
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.11 E-value=2.9e+02 Score=27.77 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 47 QEYLKLKARYEALQRSQRNLLGEELGPLNSK-ELESLERQLDMSLK----QIRSTRTQYMLDTLTELQHKEQLLSEANKT 121 (210)
Q Consensus 47 ~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~-EL~~LE~qLe~sL~----~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 121 (210)
.|..+|+.+++.+....-.+-+-++.-..++ .|..+|..++...+ -+-+..-+-..+....|+..+..+.+.|..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777666666555544433 35666666666555 455555666777777888888888888888
Q ss_pred HHHHHhhh
Q 047287 122 LKQRTMTL 129 (210)
Q Consensus 122 L~~k~~~~ 129 (210)
+.+++..+
T Consensus 201 le~ki~~l 208 (629)
T KOG0963|consen 201 LEKKISSL 208 (629)
T ss_pred HHHHHHHH
Confidence 88887554
No 57
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.99 E-value=3e+02 Score=24.53 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 95 STRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 95 srK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
.+.++.|..+|..-++-...|.++...|+..+..+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777887775433
No 58
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.97 E-value=2.9e+02 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 047287 44 SSQQEYLKLKARYEALQRSQRNL 66 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l 66 (210)
.+..|+.+|+..|+..+-...+|
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L 41 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQL 41 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555544443
No 59
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=34.81 E-value=67 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQY 100 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~ql 100 (210)
-.++..+|++|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998775
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.74 E-value=1.8e+02 Score=31.08 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGE-ELGPLNSKELESLERQLDMSLKQIRSTRTQY--MLDTLTELQHKEQLLSEANKT 121 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GE-dL~~Ls~~EL~~LE~qLe~sL~~IRsrK~ql--m~~qi~~LqkKe~~L~eeN~~ 121 (210)
+..|+..|+++++.|+..+-.++-+ .=...-.+||..|=++.+.+=...+.|=..+ +.+++++|++--+.|.++-..
T Consensus 203 lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeM 282 (1195)
T KOG4643|consen 203 LRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEM 282 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555555555555444333222 1123446777777777777666666665555 556777777776666666666
Q ss_pred HHHHHhhhh
Q 047287 122 LKQRTMTLR 130 (210)
Q Consensus 122 L~~k~~~~~ 130 (210)
|..++..+.
T Consensus 283 LeeQLq~lr 291 (1195)
T KOG4643|consen 283 LEEQLQKLR 291 (1195)
T ss_pred HHHHHHHHH
Confidence 666654443
No 61
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=33.77 E-value=1.4e+02 Score=21.66 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047287 19 TLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQ 63 (210)
Q Consensus 19 iLeRY~k~s~~~~~~~~~~~e~~~~~~~~E~~kLk~~ie~Lq~~~ 63 (210)
++=.|.+-............+..+ .+.....+|.++|+.|++..
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~-~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQ-ELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 355666444332222222222133 56777889999999999864
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.71 E-value=3e+02 Score=23.49 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLG 68 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~G 68 (210)
.+.++..++...+.|+..+-..+.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.57 E-value=4.9e+02 Score=25.82 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047287 103 DTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 103 ~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
.+..+++.+...|.+....|..+
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544444
No 64
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=33.41 E-value=2.1e+02 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
-..++|..|+++...|..+|..|++.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999888
No 65
>PRK09039 hypothetical protein; Validated
Probab=33.02 E-value=3.9e+02 Score=24.49 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 112 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe 112 (210)
+.++..|+.+|+.|+.. |..||..|+.+=.+.+..+. +|+.|+++-
T Consensus 136 ~~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~~-----~i~~L~~~L 181 (343)
T PRK09039 136 LAQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQA-----KIADLGRRL 181 (343)
T ss_pred hHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 34555677777777766 88888888888777755444 345555543
No 66
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.71 E-value=1.5e+02 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
+...+..++..++++...++.+|..|+.++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788999999999999999999996443
No 67
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.10 E-value=5.9e+02 Score=27.44 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIR--STRTQYMLDTLTELQHKEQLLSEANKTL 122 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR--srK~qlm~~qi~~LqkKe~~L~eeN~~L 122 (210)
...++..|+.+|..|...+-+ +..||..|....+.-..++- .+-..+.....+.|......|.++|..|
T Consensus 479 ~~~et~el~~~iknlnk~L~~---------r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 479 LEAETEELLNQIKNLNKSLNN---------RDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456666777776666655422 22344444333333333322 1222344455566666667778888888
Q ss_pred HHHHhhhhh
Q 047287 123 KQRTMTLRH 131 (210)
Q Consensus 123 ~~k~~~~~~ 131 (210)
.++|+.+.-
T Consensus 550 lkqI~~Lk~ 558 (1195)
T KOG4643|consen 550 LKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHH
Confidence 888776654
No 68
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=30.72 E-value=1.8e+02 Score=21.71 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 93 IRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 93 IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
||+.=......+++.|+.+-..+..+|..|...+
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i 103 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEI 103 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556778999999999999999999994
No 69
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.46 E-value=1.3e+02 Score=20.00 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANK 120 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~ 120 (210)
|-+=+.++|.+|++|...|..+.-
T Consensus 20 kiedid~qIaeLe~KR~~Lv~qHP 43 (46)
T PF08946_consen 20 KIEDIDEQIAELEAKRQRLVDQHP 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445567888999999887776543
No 70
>PLN02372 violaxanthin de-epoxidase
Probab=30.44 E-value=4.6e+02 Score=25.25 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 49 YLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLD 103 (210)
Q Consensus 49 ~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~ 103 (210)
+.+|-+.++..++.+ ++|..++|++|+.-+++|+..-..++..
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655 5679999999999999998766655543
No 71
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=30.31 E-value=61 Score=24.47 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 77 KELESLERQLDMSLKQIRSTRTQY 100 (210)
Q Consensus 77 ~EL~~LE~qLe~sL~~IRsrK~ql 100 (210)
-||+++|++-+..|..|+.+=+.|
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~nl 51 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNNL 51 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Confidence 478899999999999997664443
No 72
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=30.15 E-value=3.4e+02 Score=22.97 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=27.7
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 64 RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKT 121 (210)
Q Consensus 64 R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 121 (210)
.++.+=.|.++ .+|...|+-.++.-=+.|.+.+.+.+.+.|+.|+.+-..+..+-..
T Consensus 100 ~~Y~~leL~s~-~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~ 156 (181)
T PF04645_consen 100 NQYKNLELKSI-KKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI 156 (181)
T ss_pred HHhhhhhHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444333332 2445555555555555565555555555555554444444433333
No 73
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.99 E-value=3.1e+02 Score=22.50 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.+..+..+|+.+...|+++|+.|..++
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566778888889999999999884
No 74
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.32 E-value=2.6e+02 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 87 DMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 87 e~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
-.|+++=|.+..+.. .+++.|...|..+|..|+.++.++.
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554443333 6778888888888888888865443
No 75
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.70 E-value=2.1e+02 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047287 44 SSQQEYLKLKARYEALQRSQ 63 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~ 63 (210)
.......+|..+|+.|++.+
T Consensus 46 ~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 46 ELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999864
No 76
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.69 E-value=4.4e+02 Score=23.47 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=28.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 67 LGEELGPLNSKELESLERQLDMSLKQIRSTRTQ------YMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 67 ~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~q------lm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.|.|++.+.++ -.++.|.+||-+.--+--+ =|.+-..+++.|-..++.+|..|.+.+
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888764 3445555554332111111 233444455555555555555554444
No 77
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.57 E-value=4.5e+02 Score=23.55 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 71 LGPLNSKELESLERQLDM--SLKQIRSTRTQYM---LDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 71 L~~Ls~~EL~~LE~qLe~--sL~~IRsrK~qlm---~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
|+.||-+|-.+ -+.|.+ |--.-|.||..-| ..+|.+|-..-+.|+.+|..|+.+.
T Consensus 61 L~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 61 LDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred hcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655332 222222 3334566665543 3455556555555555555555554
No 78
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.30 E-value=2.7e+02 Score=24.06 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDM 88 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~ 88 (210)
+...+|..+.++++.|+....+|..===..=+++|+..+|++|..
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~ 173 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSR 173 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345666666666666666544433200012288888888887653
No 79
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.80 E-value=2e+02 Score=20.93 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
....+..+++.+++....|+++|..|+-+...+
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556679999999999999999999985433
No 80
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=26.48 E-value=2.6e+02 Score=28.31 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 78 ELESLERQLDMSLKQIRSTRTQY---MLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 78 EL~~LE~qLe~sL~~IRsrK~ql---m~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.|..|+++-+.=+.+.+.++.++ ..++++.||.-.+.|++|.+.|.-.+
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~ 56 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNEL 56 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777664 45778888888889999999987663
No 81
>PLN02320 seryl-tRNA synthetase
Probab=26.23 E-value=6.3e+02 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 047287 48 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQ---LDMSLKQIRSTRTQY 100 (210)
Q Consensus 48 E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~q---Le~sL~~IRsrK~ql 100 (210)
.+..+++..+.+...++.. |-+ ++++++..|.++ +..-+..+|++++.+
T Consensus 68 D~k~ir~n~~~v~~~l~~R-~~~---~~vd~l~~ld~~~r~~~~~~~~lr~ern~~ 119 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNR-NSN---ANLELVLELYENMLALQKEVERLRAERNAV 119 (502)
T ss_pred CHHHHHhCHHHHHHHHHhc-CCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776655 333 348888888754 555556666666553
No 82
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=25.41 E-value=5.5e+02 Score=24.48 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 73 PLNSKELESLERQLDMSLKQIRSTRTQYMLDTL 105 (210)
Q Consensus 73 ~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi 105 (210)
+..=.|..+||++|-.+..-|-++|.++.+.++
T Consensus 182 ~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 182 PVEETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467889999999999999999988888775
No 83
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=2.1e+02 Score=26.36 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 72 GPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEA 118 (210)
Q Consensus 72 ~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ee 118 (210)
.+||..|-..| -+||.||.||+ ++|+.|+......-++
T Consensus 9 ~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~e 46 (395)
T KOG0930|consen 9 NDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEE 46 (395)
T ss_pred CCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45666665554 46999998876 5777777665544333
No 84
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.41 E-value=4e+02 Score=21.80 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
.+-.|+.+++..+..++..+|+--.-+-..++..++.....|+.+-..|+.+
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888886555444455555555544444444444444
No 85
>PHA03162 hypothetical protein; Provisional
Probab=24.38 E-value=1.1e+02 Score=24.71 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047287 105 LTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 105 i~~LqkKe~~L~eeN~~L~~k~ 126 (210)
+++|..+...|+-||+.|++++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 86
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=24.35 E-value=1.3e+02 Score=20.13 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047287 70 ELGPLNSKELESLERQLDMSLKQIRST 96 (210)
Q Consensus 70 dL~~Ls~~EL~~LE~qLe~sL~~IRsr 96 (210)
||..+|.+||...-..+...|-..|-.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999998888888888888743
No 87
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.99 E-value=2.3e+02 Score=24.56 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=37.1
Q ss_pred CHHHHHHHHhhhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047287 15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIR 94 (210)
Q Consensus 15 Sm~kiLeRY~k~s~~~~~~~~~~~e~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR 94 (210)
|++.+++||.+.+.. ++.+|.++|+..+..+-.+.|.. +-...|...|+..+..--..|-
T Consensus 131 S~r~lf~R~~k~~~~------------------~i~~l~~ri~~~~~kl~~l~~~~--~~~~~e~ekl~~~i~~d~~~i~ 190 (246)
T cd07597 131 SLRDLFERHEKLSLN------------------NIQRLLKRIELNKKKLESLRAKP--DVKGAEVDKLEASIIKDKESIA 190 (246)
T ss_pred HHHHHHHHHHhcccc------------------cHHHHHHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhccHHHHH
Confidence 578888888876532 23345666666666666665664 4555688888887764444443
No 88
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.95 E-value=1.3e+02 Score=23.58 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 101 MLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 101 m~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
+..+|..|++.-..|.|+|..|+-....++
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 457899999999999999999998865554
No 89
>PHA02109 hypothetical protein
Probab=23.93 E-value=2.2e+02 Score=24.30 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=27.7
Q ss_pred HhhhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 62 SQRNLLGEELGPLN--SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLS 116 (210)
Q Consensus 62 ~~R~l~GEdL~~Ls--~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ 116 (210)
.-|+..||.|++|+ ++++-.||-.| +.+.++...+|.|...+.
T Consensus 176 ~~~~~t~~~L~~~~~~L~~I~~L~~ki------------~~LS~E~~Q~~~Ki~N~R 220 (233)
T PHA02109 176 VERSHTGENLEGLTDKLKQISELTIKL------------EALSDEACQVKHKILNLR 220 (233)
T ss_pred HHhccchhhhhhhhHHHHhhHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 34556799999988 66666666644 455566666666654443
No 90
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.91 E-value=1.6e+02 Score=24.58 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 79 LESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 79 L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
|..+|..|..|+.+ +=+|..+|+ .| ..|.+++..|+.+
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELd---EK-E~L~~~~QRLkDE 39 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELD---EK-ENLREEVQRLKDE 39 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHH---HH-HHHHHCH------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHH---HH-HHHHHHHHHHHHH
Confidence 67889999998875 345555552 22 2244455555554
No 91
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=23.64 E-value=2.7e+02 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047287 109 QHKEQLLSEANKTLKQR 125 (210)
Q Consensus 109 qkKe~~L~eeN~~L~~k 125 (210)
-.+-+.+.+.|..|-..
T Consensus 97 ~~~~~~~n~~N~~ll~~ 113 (143)
T PF05130_consen 97 LEELQELNERNQQLLEQ 113 (143)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 92
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.47 E-value=4.4e+02 Score=21.96 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047287 71 LGPLNSKELESLERQLDMSLKQIRS--TRTQYMLDTLTELQHKEQLLSEANKTLKQRTM 127 (210)
Q Consensus 71 L~~Ls~~EL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~ 127 (210)
.++|++++.-..=++|......... .-++-+..++..|+.+...|..+|..|.+++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999877777777654333322 22345667788888888888888888888743
No 93
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.35 E-value=3.9e+02 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
-..+.|..|+++-+.+..+.+...++.
T Consensus 59 ~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 59 RDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556677777777777777776664
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.21 E-value=4.3e+02 Score=22.30 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047287 77 KELESLERQLDMSLKQIR 94 (210)
Q Consensus 77 ~EL~~LE~qLe~sL~~IR 94 (210)
..|..++..|+.+=++|-
T Consensus 125 ~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555554444443
No 95
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.96 E-value=2.3e+02 Score=27.24 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047287 69 EELGPLNSKELESLERQLDMSLKQIRS---------TRTQYMLDTLTELQHK-EQLLSEANKTLKQR 125 (210)
Q Consensus 69 EdL~~Ls~~EL~~LE~qLe~sL~~IRs---------rK~qlm~~qi~~LqkK-e~~L~eeN~~L~~k 125 (210)
++|..||..--.-+.+++++||.-|.. .+.+-++..++..++| +..|+..| ....|
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~-e~e~k 66 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLAN-EVEEK 66 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345556665566677888888777753 3344555566666543 33343333 33444
No 96
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.74 E-value=3.2e+02 Score=25.88 Aligned_cols=62 Identities=29% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLD----MSLKQIRSTRTQYMLDTLTELQHKEQL 114 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe----~sL~~IRsrK~qlm~~qi~~LqkKe~~ 114 (210)
..++-+.+++.+|...+...- =++.|--.|=..-| .=++++-.||+|.-...|..|+||-..
T Consensus 8 ~l~~Ki~~~~eqi~~e~~~rd---------~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~ 73 (395)
T PF10267_consen 8 HLQQKILKLKEQIKVEQTARD---------ENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQ 73 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445556666666655544332 12233333322222 236777799999999999999999443
No 97
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.72 E-value=3.3e+02 Score=20.23 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHH--HHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQ--RSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq--~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
..|.......++.|. ...-.++|+=+=..+.++ +...+..++ +.+...|+.+.++...+..+=..|+
T Consensus 29 ~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~e----------a~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 29 LNENKKALEELEKLADDAEVYKLVGNVLVKQEKEE----------ARTELKERL-ETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555552 234466676555555444 333332222 2334445555555555555555555
Q ss_pred HH
Q 047287 124 QR 125 (210)
Q Consensus 124 ~k 125 (210)
.+
T Consensus 98 ~~ 99 (105)
T cd00632 98 EK 99 (105)
T ss_pred HH
Confidence 55
No 98
>PRK11239 hypothetical protein; Provisional
Probab=22.61 E-value=1.4e+02 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=18.7
Q ss_pred ccCccccccCCCCCHHHHHHHHhhh
Q 047287 2 YSFSLITPCENLISMVKTLERYQKC 26 (210)
Q Consensus 2 ~sGKLyEfsS~s~Sm~kiLeRY~k~ 26 (210)
.|+|||+|+.-+ +++.+|++-...
T Consensus 120 Rs~Rl~~F~dv~-~Ve~~L~~L~~r 143 (215)
T PRK11239 120 RAARMYEFSDMA-EVESTLEQLANR 143 (215)
T ss_pred hHhcCCcCCCHH-HHHHHHHHHHhc
Confidence 478999999876 888888876543
No 99
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.56 E-value=5.9e+02 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKL--KARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTR 97 (210)
Q Consensus 44 ~~~~E~~kL--k~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK 97 (210)
.|..-+..| +.+++.++.....+...++.+ +.++.+.-++++.-.+.++.-|
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~--p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKN--PLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777 777788888888887765553 5566666666665555554433
No 100
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=21.87 E-value=5.2e+02 Score=22.31 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGEELGPLNSK------ELESLERQLDMSLKQIRSTRTQYM 101 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~------EL~~LE~qLe~sL~~IRsrK~qlm 101 (210)
...+.+.+|..++.| ..+|-.||++++-+..+ -...||..+-.--++.|+||....
T Consensus 13 ~s~~a~~~k~~~~~l-a~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~A 74 (228)
T PF06721_consen 13 ASKEAAHAKSEHATL-AYQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYA 74 (228)
T ss_pred HhHHhhhhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665 35677788888776543 134577777777778888766544
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.40 E-value=6.2e+02 Score=23.17 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 101 MLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 101 m~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
+..+|-+|++|.+.+--+|..|...+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45677888899998888888888775
No 102
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=7e+02 Score=23.41 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=49.0
Q ss_pred CHHHHHHHHhhhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047287 15 SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIR 94 (210)
Q Consensus 15 Sm~kiLeRY~k~s~~~~~~~~~~~e~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR 94 (210)
.+..+++||........+.... ....+|.+|-++...|+...- .++++.+++.+|+.+-.-+.
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~-------~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVI-------SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLA 70 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccc-------cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 4788999998765432221111 112344444444444443332 24566666666666544444
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 95 STRT----QYMLDTLTELQHKEQLLSEANKTL 122 (210)
Q Consensus 95 srK~----qlm~~qi~~LqkKe~~L~eeN~~L 122 (210)
..++ .+..++|.+++.+...|.++=+.|
T Consensus 71 ~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 71 EEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 455567777777766666655544
No 103
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.92 E-value=1.2e+02 Score=27.51 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=29.8
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 047287 58 ALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQI 93 (210)
Q Consensus 58 ~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~I 93 (210)
.+++..+++.=|.|.+|+++||.+|=.+|-..+..|
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~v 238 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDV 238 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999988886655554
No 104
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.85 E-value=1.1e+03 Score=25.63 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRS------TRTQYMLDTLTELQHKEQLLSEAN 119 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRs------rK~qlm~~qi~~LqkKe~~L~eeN 119 (210)
..++..++.+++.|.....-..+ ..++++|+.-=..++..+..++. ...+-+..+|..|+.|...+....
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k 873 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666555543222 23666655444444444444422 122233466677766666655555
Q ss_pred HHHHHHH
Q 047287 120 KTLKQRT 126 (210)
Q Consensus 120 ~~L~~k~ 126 (210)
..+..++
T Consensus 874 lkl~~~l 880 (1311)
T TIGR00606 874 LQIGTNL 880 (1311)
T ss_pred HHHHHHH
Confidence 5555543
No 105
>smart00030 CLb CLUSTERIN Beta chain.
Probab=20.84 E-value=3.2e+02 Score=23.64 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 047287 69 EELGPLNSKELESLERQLDMSLKQIRSTRT---------QYMLDTLTELQH-KEQLLSEANKTLKQR 125 (210)
Q Consensus 69 EdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~---------qlm~~qi~~Lqk-Ke~~L~eeN~~L~~k 125 (210)
++|..||..-=.-+.+++++||+-|..-|+ +-|+..+++.++ ||..|...| ....|
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~-e~e~k 72 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTR-ESEEK 72 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344455555556678889998888865443 345555655554 444444333 33444
No 106
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.70 E-value=3.8e+02 Score=20.19 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHH
Q 047287 73 PLNSKELESLERQ 85 (210)
Q Consensus 73 ~Ls~~EL~~LE~q 85 (210)
+++++|+..+=..
T Consensus 56 G~sl~eI~~~l~~ 68 (116)
T cd04769 56 GFTLAELKAIFAG 68 (116)
T ss_pred CCCHHHHHHHHhc
Confidence 4777777766433
No 107
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=20.65 E-value=3.2e+02 Score=26.87 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 047287 71 LGPLNSKELESLERQLDMS 89 (210)
Q Consensus 71 L~~Ls~~EL~~LE~qLe~s 89 (210)
|.+-|+.+|.+||.|++.-
T Consensus 287 l~~Ks~~qL~eLe~qieak 305 (623)
T KOG2370|consen 287 LAGKSFEQLEELEAQIEAK 305 (623)
T ss_pred hCCcCHHHHHHHHHHHHHH
Confidence 5677888888888888753
No 108
>smart00338 BRLZ basic region leucin zipper.
Probab=20.46 E-value=2.8e+02 Score=18.65 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+-+.+..+...|+.+...|..++..|+..
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888888888888887766
No 109
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.38 E-value=8.1e+02 Score=23.89 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 124 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 124 (210)
++.++..|.++++.|......|. +....+.++++.+|...| +-+.++++.|+.....++..=..|..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444332 233456677777776655 33444556666555555555555665
Q ss_pred HH
Q 047287 125 RT 126 (210)
Q Consensus 125 k~ 126 (210)
++
T Consensus 138 ~l 139 (472)
T TIGR03752 138 RL 139 (472)
T ss_pred HH
Confidence 54
No 110
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.31 E-value=2e+02 Score=20.50 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 99 QYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 99 qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|..+..|+++++|.+.|+-.--...-.+|++
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~LhDL 32 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMELHDL 32 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567788999999998887666655555444
No 111
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=20.23 E-value=4.9e+02 Score=24.22 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQ 109 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~Lq 109 (210)
.-++..|..+++.|...++...|. ..-.....+.+.+...-+.||+.|.++-.+-....+
T Consensus 287 dpei~~l~~~~~~L~~~i~~~~~~----~~~~~~~~~~~~~~k~~r~l~~~rqrlr~~~~~~~r 346 (418)
T PF11917_consen 287 DPEIQELQRRRDELKKEIRREYGS----ISKAKGTPLYRRYEKLQRELRNERQRLRRELKKEIR 346 (418)
T ss_pred CcHHHHHHHHHHHHHhhhhhhccc----hhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355666777777777766654333 222222226677777777777777776654444443
No 112
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.19 E-value=3.8e+02 Score=22.98 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQR 61 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~ 61 (210)
+..|++.|..++...++
T Consensus 101 LkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
Done!