Query 047287
Match_columns 210
No_of_seqs 200 out of 1379
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 97.3 9.2E-05 3.1E-09 54.7 2.1 27 2-30 49-75 (90)
2 1egw_A MADS box transcription 97.3 9.5E-05 3.3E-09 53.0 2.0 24 3-28 50-73 (77)
3 1mnm_A Protein (MCM1 transcrip 94.7 0.007 2.4E-07 45.4 0.6 23 3-27 66-88 (100)
4 1k6o_B SRF, serum response fac 91.9 0.017 5.9E-07 43.4 -1.3 28 2-31 58-90 (103)
5 2jee_A YIIU; FTSZ, septum, coi 91.6 1 3.4E-05 32.3 7.8 46 74-124 3-48 (81)
6 1hbx_A SRF, serum response fac 88.7 0.037 1.3E-06 40.8 -1.9 21 2-24 59-79 (92)
7 2w6a_A ARF GTPase-activating p 83.4 8.2 0.00028 26.0 8.7 53 72-124 8-62 (63)
8 2dgc_A Protein (GCN4); basic d 80.7 5.2 0.00018 26.9 6.1 37 89-129 20-56 (63)
9 1dh3_A Transcription factor CR 79.4 6.5 0.00022 25.7 6.1 37 89-129 12-48 (55)
10 1t2k_D Cyclic-AMP-dependent tr 78.2 7.6 0.00026 25.6 6.3 38 89-130 12-49 (61)
11 2wt7_A Proto-oncogene protein 76.1 9.3 0.00032 25.4 6.3 37 89-129 13-49 (63)
12 1jnm_A Proto-oncogene C-JUN; B 75.1 10 0.00035 25.1 6.3 38 89-130 12-49 (62)
13 1ci6_A Transcription factor AT 74.0 11 0.00039 25.1 6.3 38 88-129 12-49 (63)
14 1dip_A Delta-sleep-inducing pe 73.2 5.3 0.00018 28.1 4.5 27 99-125 18-44 (78)
15 2oqq_A Transcription factor HY 72.1 15 0.00052 22.9 6.2 28 98-125 12-39 (42)
16 2dfs_A Myosin-5A; myosin-V, in 70.3 32 0.0011 34.9 11.3 85 44-130 957-1043(1080)
17 1go4_E MAD1 (mitotic arrest de 67.4 24 0.00082 26.0 7.3 16 111-126 76-91 (100)
18 3hnw_A Uncharacterized protein 67.2 41 0.0014 25.9 11.1 68 44-125 65-132 (138)
19 1gd2_E Transcription factor PA 62.0 29 0.001 23.8 6.5 41 88-128 18-61 (70)
20 2yy0_A C-MYC-binding protein; 59.0 19 0.00064 23.4 4.8 27 99-125 22-48 (53)
21 3oja_B Anopheles plasmodium-re 58.7 1.1E+02 0.0036 27.8 14.8 27 100-126 548-574 (597)
22 3oja_A Leucine-rich immune mol 58.5 1E+02 0.0034 27.4 11.7 82 45-130 372-462 (487)
23 1a93_B MAX protein, coiled coi 57.5 17 0.0006 21.7 4.0 26 95-120 6-31 (34)
24 3hnw_A Uncharacterized protein 56.0 66 0.0023 24.6 8.8 51 79-129 77-129 (138)
25 1hjb_A Ccaat/enhancer binding 55.3 37 0.0013 24.2 6.3 37 89-129 26-62 (87)
26 3nmd_A CGMP dependent protein 54.9 50 0.0017 22.9 7.9 44 79-127 21-64 (72)
27 1gu4_A CAAT/enhancer binding p 54.3 42 0.0014 23.5 6.3 38 88-129 25-62 (78)
28 2v71_A Nuclear distribution pr 53.2 91 0.0031 25.4 13.4 24 105-128 90-113 (189)
29 3s9g_A Protein hexim1; cyclin 49.0 77 0.0026 23.3 8.3 54 44-125 34-87 (104)
30 3s9g_A Protein hexim1; cyclin 48.1 80 0.0027 23.2 10.5 16 110-125 65-80 (104)
31 1j1e_C Troponin I, TNI; THIN f 46.8 1.1E+02 0.0039 24.6 8.7 65 51-115 30-105 (180)
32 2zqm_A Prefoldin beta subunit 44.4 83 0.0028 22.4 7.6 39 86-125 68-106 (117)
33 3anw_B GINS23, putative unchar 41.3 41 0.0014 27.0 5.1 49 49-98 82-132 (171)
34 3m9b_A Proteasome-associated A 39.8 54 0.0019 27.9 5.9 43 78-125 55-97 (251)
35 1m1j_C Fibrinogen gamma chain; 37.4 2.3E+02 0.0079 25.5 12.1 58 5-70 14-71 (409)
36 1ytz_T Troponin T; muscle, THI 35.9 87 0.003 23.1 5.8 32 70-101 38-69 (107)
37 1j1d_C Troponin I, TNI; THIN f 35.9 1.5E+02 0.005 22.8 10.4 51 51-101 30-85 (133)
38 2aze_A Transcription factor DP 35.7 1.6E+02 0.0055 23.2 8.1 49 75-125 3-51 (155)
39 1e52_A Excinuclease ABC subuni 34.5 32 0.0011 23.1 3.0 43 69-111 12-58 (63)
40 3q4f_C DNA repair protein XRCC 31.9 49 0.0017 27.0 4.1 24 102-125 160-183 (186)
41 1gk7_A Vimentin; intermediate 30.4 92 0.0032 18.8 4.9 27 100-126 10-36 (39)
42 1uii_A Geminin; human, DNA rep 30.0 1.2E+02 0.004 21.6 5.4 29 98-126 48-76 (83)
43 2xus_A Breast cancer metastasi 29.3 1.1E+02 0.0039 19.5 5.6 33 76-115 12-44 (49)
44 3oja_B Anopheles plasmodium-re 26.9 3.5E+02 0.012 24.3 10.8 35 94-128 521-555 (597)
45 3s4r_A Vimentin; alpha-helix, 26.4 1.7E+02 0.006 20.7 8.3 31 98-128 51-81 (93)
46 3ghg_A Fibrinogen alpha chain; 25.8 2.7E+02 0.0091 26.3 8.5 16 46-61 63-78 (562)
47 3na7_A HP0958; flagellar bioge 24.6 2.9E+02 0.0099 22.6 9.4 37 75-111 88-126 (256)
48 3s4r_A Vimentin; alpha-helix, 24.3 1.5E+02 0.0053 20.9 5.4 33 79-111 11-45 (93)
49 2jee_A YIIU; FTSZ, septum, coi 24.2 1.6E+02 0.0056 20.7 5.3 33 96-128 13-45 (81)
50 1f5n_A Interferon-induced guan 24.2 2.3E+02 0.0079 26.6 8.0 35 97-131 520-559 (592)
51 1g6u_A Domain swapped dimer; d 24.0 1.3E+02 0.0046 18.5 6.9 26 72-97 15-40 (48)
52 1am9_A Srebp-1A, protein (ster 23.8 1E+02 0.0034 21.2 4.2 24 105-128 52-75 (82)
53 1go4_E MAD1 (mitotic arrest de 23.1 1.1E+02 0.0039 22.3 4.4 25 103-127 12-36 (100)
54 1ci6_A Transcription factor AT 23.0 1.6E+02 0.0056 19.2 5.6 29 97-125 31-59 (63)
55 2l5g_B Putative uncharacterize 22.9 1.4E+02 0.0049 18.5 5.5 38 74-119 2-39 (42)
56 2l5g_A GPS2 protein, G protein 22.0 1.1E+02 0.0038 18.5 3.5 21 103-123 15-35 (38)
57 3w03_C DNA repair protein XRCC 21.1 1.1E+02 0.0036 24.9 4.3 26 100-125 149-174 (184)
58 1nkp_B MAX protein, MYC proto- 21.1 2E+02 0.0068 19.5 6.1 24 103-126 54-77 (83)
59 3twe_A Alpha4H; unknown functi 20.7 1.2E+02 0.004 16.7 3.3 20 45-64 6-25 (27)
60 1zke_A Hypothetical protein HP 20.2 1.2E+02 0.004 21.4 3.8 24 44-67 56-79 (83)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=97.28 E-value=9.2e-05 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.4
Q ss_pred ccCccccccCCCCCHHHHHHHHhhhhCCC
Q 047287 2 YSFSLITPCENLISMVKTLERYQKCNYGA 30 (210)
Q Consensus 2 ~sGKLyEfsS~s~Sm~kiLeRY~k~s~~~ 30 (210)
-+||+|+|||+ +|.+||+||++++...
T Consensus 49 ~~gk~~~f~s~--~~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 49 SSNKLFQYAST--DMDKVLLKYTEYNEPH 75 (90)
T ss_dssp TTCCEEEEESS--CHHHHHHHHHHCCSCC
T ss_pred CCCCEEEeCCC--CHHHHHHHHHhcCccc
Confidence 37999999996 7999999999987643
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=97.27 E-value=9.5e-05 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCccccccCCCCCHHHHHHHHhhhhC
Q 047287 3 SFSLITPCENLISMVKTLERYQKCNY 28 (210)
Q Consensus 3 sGKLyEfsS~s~Sm~kiLeRY~k~s~ 28 (210)
+||+|+|+|+ +|.+||+||++++.
T Consensus 50 ~gk~~~~~s~--~~~~il~ry~~~~~ 73 (77)
T 1egw_A 50 SNKLFQYAST--DMDKVLLKYTEYNE 73 (77)
T ss_dssp TCCEEEEESS--CHHHHHHHHHHC--
T ss_pred CCCEeeCCCC--CHHHHHHHHHhccC
Confidence 7999999987 79999999998764
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=94.71 E-value=0.007 Score=45.35 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=19.7
Q ss_pred cCccccccCCCCCHHHHHHHHhhhh
Q 047287 3 SFSLITPCENLISMVKTLERYQKCN 27 (210)
Q Consensus 3 sGKLyEfsS~s~Sm~kiLeRY~k~s 27 (210)
+||+|+|+|+ +|..||+||....
T Consensus 66 ~gk~~~f~sp--s~~~il~r~~G~~ 88 (100)
T 1mnm_A 66 TGLVYTFSTP--KFEPIVTQQEGRN 88 (100)
T ss_dssp TCCEEEEECT--TTTHHHHSHHHHH
T ss_pred CCCcceecCC--CHHHHHHHhhCCc
Confidence 6999999998 7999999996543
No 4
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=91.88 E-value=0.017 Score=43.40 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=22.6
Q ss_pred ccCccccccCCCCCHHHHHHH-----HhhhhCCCC
Q 047287 2 YSFSLITPCENLISMVKTLER-----YQKCNYGAP 31 (210)
Q Consensus 2 ~sGKLyEfsS~s~Sm~kiLeR-----Y~k~s~~~~ 31 (210)
.+||+|+|+|+ +|..+|++ |.+++....
T Consensus 58 ~~gk~~~f~s~--~~~~vi~~~~Gk~l~~~c~~~~ 90 (103)
T 1k6o_B 58 ETGHVYTFATR--KLQPMITSETGKALIQTCLNSP 90 (103)
T ss_dssp SSSCEEEEECG--GGGGGTSSHHHHHHHHHTTCC-
T ss_pred CCCCeeeecCc--cHHHHHHhhhhhHHHHHHhcCC
Confidence 37999999998 79999998 777776543
No 5
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.64 E-value=1 Score=32.32 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 124 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 124 (210)
+|++=|.+||..++.|+..| .++..+|++|+.|-..|.++|..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999987 56677778888887776666665333
No 6
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=88.65 E-value=0.037 Score=40.77 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=18.1
Q ss_pred ccCccccccCCCCCHHHHHHHHh
Q 047287 2 YSFSLITPCENLISMVKTLERYQ 24 (210)
Q Consensus 2 ~sGKLyEfsS~s~Sm~kiLeRY~ 24 (210)
.+||+|+|+|+ +|..+|++|.
T Consensus 59 ~~gk~~~f~s~--~~~~~i~~~~ 79 (92)
T 1hbx_A 59 ETGHVYTFATR--KLQPMITSET 79 (92)
T ss_dssp TTSCEEEEECG--GGGGGTSSHH
T ss_pred CCCCEEEecCC--CHHHHHhhhc
Confidence 37999999998 7999999773
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=83.41 E-value=8.2 Score=26.02 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 72 GPLNSKELESLERQLDMSLKQIRS--TRTQYMLDTLTELQHKEQLLSEANKTLKQ 124 (210)
Q Consensus 72 ~~Ls~~EL~~LE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 124 (210)
++.++.|...+-+-|-.|=.+|-. +=+.-+.+++.-||+|.+.|+.+|..||.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 456677777776666666555542 33455678889999999999999999874
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.72 E-value=5.2 Score=26.94 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|-.+.|.||.+.+ .+|..+...|..+|..|..++..+
T Consensus 20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887765 789999999999999999985443
No 9
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.36 E-value=6.5 Score=25.71 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|-.+-|.||...+ ++|..+...|..+|..|..++..+
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777554 788899999999999999995443
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.18 E-value=7.6 Score=25.61 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
|..+-|.||.+.+ ..|..+...|..+|..|..++..+.
T Consensus 12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788887765 7888899999999999998865543
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.06 E-value=9.3 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|..+-|.||.+.+ ..|+.+...|..+|..|..++..+
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566688887765 789999999999999999996544
No 12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.07 E-value=10 Score=25.06 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 130 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~~ 130 (210)
|..+-|.||.+.+ ..|..+...|..+|..|..++..+.
T Consensus 12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788887765 7899999999999999999965443
No 13
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=74.03 E-value=11 Score=25.12 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 88 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 88 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
.|..+-|.+|.+-+ +.|..+...|..+|..|..++..+
T Consensus 12 ~AA~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 12 TAATRYRQKKRAEQ----EALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776544 678888888888888888886444
No 14
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.25 E-value=5.3 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 99 QYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 99 qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.+.++|.+|..|...|+.+|..|+.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788889999999999999998876
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.09 E-value=15 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 98 TQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 98 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
.+-|...+.+|..|.-.|+.+|..||..
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3345566788888899999999999987
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.28 E-value=32 Score=34.87 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEE--LGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKT 121 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEd--L~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 121 (210)
.+..|+.+|++.++.|+.......--. +..| -+|+..|+.+++...+.-...+. .+.+..++|+.|...|.++|..
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L-~~e~~~l~~~~~~~~ke~~~lee-~~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL-QEEIAKLRKELHQTQTEKKTIEE-WADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788777777666433222000 0000 12223333333333322222111 1222235778888999999999
Q ss_pred HHHHHhhhh
Q 047287 122 LKQRTMTLR 130 (210)
Q Consensus 122 L~~k~~~~~ 130 (210)
|+.++.++.
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876554
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.38 E-value=24 Score=26.01 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 047287 111 KEQLLSEANKTLKQRT 126 (210)
Q Consensus 111 Ke~~L~eeN~~L~~k~ 126 (210)
....|+.++..|+.++
T Consensus 76 ~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 76 DHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345666667776663
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.16 E-value=41 Score=25.87 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
+...|+.+++.+++.|+..+..+ -+|+..|=++|..+--++ +-...+++.|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~-----e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKA-----ESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888887666554 455555555554443333 2333445566666666666666666
Q ss_pred HH
Q 047287 124 QR 125 (210)
Q Consensus 124 ~k 125 (210)
.+
T Consensus 131 ~~ 132 (138)
T 3hnw_A 131 TE 132 (138)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.95 E-value=29 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 88 MSLKQIRSTRTQYML---DTLTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 88 ~sL~~IRsrK~qlm~---~qi~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
.|=+..|.||.+-|. .++..|......|..+|..|+..+..
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888877553 35555555555667777777777543
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.98 E-value=19 Score=23.40 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 99 QYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 99 qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.|..++++||.|...|.+++..|+.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999998
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.70 E-value=1.1e+02 Score=27.83 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
.|..+++..+++...+.+++..++.++
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666663
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.47 E-value=1e+02 Score=27.45 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCC--------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 45 SQQEYLKLKARYEALQRSQRNLLGEELG--------PLN-SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 115 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R~l~GEdL~--------~Ls-~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L 115 (210)
..+.+.+++......+...+...++.-. .+- ++....-=..+...+...|.+..+. .+..++.+..|
T Consensus 372 le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 447 (487)
T 3oja_A 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD----WDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhh----hhhhhhHHHHH
Confidence 3445555666666666666666554110 000 1111111112333344445443333 35667777778
Q ss_pred HHHHHHHHHHHhhhh
Q 047287 116 SEANKTLKQRTMTLR 130 (210)
Q Consensus 116 ~eeN~~L~~k~~~~~ 130 (210)
.++|..+++.+.++.
T Consensus 448 ~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 448 AEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhh
Confidence 888888888765543
No 23
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.54 E-value=17 Score=21.69 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 95 STRTQYMLDTLTELQHKEQLLSEANK 120 (210)
Q Consensus 95 srK~qlm~~qi~~LqkKe~~L~eeN~ 120 (210)
.||+.-....|++|+++-..|.++=+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 47888888888888887666666543
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.99 E-value=66 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 79 LESLERQLDMSLKQIRSTRTQYMLD--TLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 79 L~~LE~qLe~sL~~IRsrK~qlm~~--qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
...|+.+++.--+.|=+-|.++... +++.+.++...|.+++..|.+++..+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666677776653 34566677777788888887775443
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.27 E-value=37 Score=24.24 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 89 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 89 sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
|.++-|.++.+-- .+++.+...|..+|..|+.++..+
T Consensus 26 AarrSR~krk~r~----~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 26 AVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665554433 466777788888888888886444
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.90 E-value=50 Score=22.89 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047287 79 LESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTM 127 (210)
Q Consensus 79 L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~ 127 (210)
+..|+..|......||.+... |.+|.+.-....++...|+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888898888888876543 56666666666777778887743
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.26 E-value=42 Score=23.47 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047287 88 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 129 (210)
Q Consensus 88 ~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~~ 129 (210)
.|.++-|.++.+-- .+++.+...|..+|..|+.++..+
T Consensus 25 ~AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665555443 467788888999999999986544
No 28
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.22 E-value=91 Score=25.36 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 105 LTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 105 i~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
|..|++....|...+..|+.++.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666544
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.97 E-value=77 Score=23.33 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 123 (210)
.+-+||..|-++++.++...+++- ++... .-.+|.+|..+...|..+|..|+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr-------------~~~~~---------------~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLR-------------LESKR---------------LDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcc---------------chhhHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888876654331 11111 13455666666677777777776
Q ss_pred HH
Q 047287 124 QR 125 (210)
Q Consensus 124 ~k 125 (210)
..
T Consensus 86 ~e 87 (104)
T 3s9g_A 86 TE 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 30
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.09 E-value=80 Score=23.25 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 047287 110 HKEQLLSEANKTLKQR 125 (210)
Q Consensus 110 kKe~~L~eeN~~L~~k 125 (210)
.+.+.|..+=..|+..
T Consensus 65 ~~v~eLe~everL~~E 80 (104)
T 3s9g_A 65 ARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445555555555544
No 31
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=46.82 E-value=1.1e+02 Score=24.63 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhhhhcC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 047287 51 KLKARYEALQRSQRNLLGE-----ELGPLNSKELESLERQLDMSLKQIRSTRTQYMLD------TLTELQHKEQLL 115 (210)
Q Consensus 51 kLk~~ie~Lq~~~R~l~GE-----dL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~------qi~~LqkKe~~L 115 (210)
.|+++-+.....-+.++.| +|++||.++|+.+=++|-.-+..+=+-|..+-.. +|.+|+.+...|
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 3555555555555666653 7888899999999999998888887777766432 355555554444
No 32
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.39 E-value=83 Score=22.39 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 86 LDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 86 Le~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
++.++..+-.|+.. +...|..|.++...+..+=..|+.+
T Consensus 68 ~~ea~~~L~~~~e~-ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 68 KDKAVAELKEKIET-LEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443 3677788888877777777777777
No 33
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=41.28 E-value=41 Score=27.02 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHH
Q 047287 49 YLKLKARYEALQRSQRNLLGEELGPLN--SKELESLERQLDMSLKQIRSTRT 98 (210)
Q Consensus 49 ~~kLk~~ie~Lq~~~R~l~GEdL~~Ls--~~EL~~LE~qLe~sL~~IRsrK~ 98 (210)
|.+.+.-+..|+..+|.-.+.|++.+. +++|..+.+.++ .|..+|-+|-
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456677789999999999888877643 357777766654 3556666653
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.77 E-value=54 Score=27.91 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 78 ELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 78 EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
.+.+|+.+++.- +.|++.+.+.+..++++...|.+++..|+.-
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666555432 4567777888888888888888888887654
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.38 E-value=2.3e+02 Score=25.51 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=37.7
Q ss_pred ccccccCCCCCHHHHHHHHhhhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047287 5 SLITPCENLISMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEE 70 (210)
Q Consensus 5 KLyEfsS~s~Sm~kiLeRY~k~s~~~~~~~~~~~e~~~~~~~~E~~kLk~~ie~Lq~~~R~l~GEd 70 (210)
++=.||=+..-++++|.+|++-... .-..++ ..-.|+..++..+..|-+.+.....++
T Consensus 14 ~~G~~CPT~C~i~d~L~k~e~~V~~-------~l~~LE-~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 14 RFGSYCPTTCGIADFFNKYRLTTDG-------ELLEIE-GLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp GGCCEEECTTHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred ccCCcCCCcccHHHHHHHHHhcchh-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345673333699999999986532 111133 556788888888887777777766654
No 36
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=35.87 E-value=87 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 70 ELGPLNSKELESLERQLDMSLKQIRSTRTQYM 101 (210)
Q Consensus 70 dL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm 101 (210)
+|++||.++|+.+=++|-.-+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999888888877776654
No 37
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=35.85 E-value=1.5e+02 Score=22.77 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 51 KLKARYEALQRSQRNLLG-----EELGPLNSKELESLERQLDMSLKQIRSTRTQYM 101 (210)
Q Consensus 51 kLk~~ie~Lq~~~R~l~G-----EdL~~Ls~~EL~~LE~qLe~sL~~IRsrK~qlm 101 (210)
.|+++-+.....-+.++. -+|++||.++|+.+=++|-..+..+=+-|..+-
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 355555555566566666 378899999999999999988888877776664
No 38
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=35.65 E-value=1.6e+02 Score=23.18 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 75 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 75 s~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
|..|.+.||..-..-+.+|+.+|.+|- ++...+.=-+.|.+.|+.+..+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999998999987766542 2333333346788888887654
No 39
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=34.48 E-value=32 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 69 EELGPLNSKE----LESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 111 (210)
Q Consensus 69 EdL~~Ls~~E----L~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkK 111 (210)
++...++.++ +..||+++..+.....--+...+.++|..|+++
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3455565444 667888888888888888888888888888765
No 40
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.94 E-value=49 Score=26.96 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 102 LDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 102 ~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+++|.+|+.+-..|+++|..|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999775
No 41
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.43 E-value=92 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
-+.+....--.|++.|..+|..|..++
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555578999999999999883
No 42
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.01 E-value=1.2e+02 Score=21.56 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 98 TQYMLDTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 98 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
++-+.++|+.|+.....|.++|..|+.-.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777776653
No 43
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=29.31 E-value=1.1e+02 Score=19.50 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 76 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 115 (210)
Q Consensus 76 ~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L 115 (210)
+++|..||+| --.-|.|+..+.|..++++...+
T Consensus 12 ld~l~~LEkq-------F~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQ-------FSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666643 33447778888887777765443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.88 E-value=3.5e+02 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 94 RSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 94 RsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
+.++.+...+++++.+++-+.++++...|++++.+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 34555566666666666656666666666666433
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.38 E-value=1.7e+02 Score=20.66 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 98 TQYMLDTLTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 98 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
..++...|.+|+++...+..+|..|...+..
T Consensus 51 ~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 51 GDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999888877544
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.79 E-value=2.7e+02 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 047287 46 QQEYLKLKARYEALQR 61 (210)
Q Consensus 46 ~~E~~kLk~~ie~Lq~ 61 (210)
..-+.+||.+++.+++
T Consensus 63 tkrINELKnqLEdlsK 78 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344445555544443
No 47
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.58 E-value=2.9e+02 Score=22.60 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 047287 75 NSKELESLERQLDMSLKQIRSTRTQYM--LDTLTELQHK 111 (210)
Q Consensus 75 s~~EL~~LE~qLe~sL~~IRsrK~qlm--~~qi~~LqkK 111 (210)
+.+|+..|.+.++.+-++|...-.+++ +++++.++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988877765555433 3445444433
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.29 E-value=1.5e+02 Score=20.93 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 047287 79 LESLERQLDMSLKQIR--STRTQYMLDTLTELQHK 111 (210)
Q Consensus 79 L~~LE~qLe~sL~~IR--srK~qlm~~qi~~LqkK 111 (210)
++.|=..|-.-|.+|| ..-+..+..+|..++.+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455555555555 23344444444444443
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.17 E-value=1.6e+02 Score=20.67 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 96 TRTQYMLDTLTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 96 rK~qlm~~qi~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
.|-+-..+.|.-||-....|.++|..|..+..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777788888877777433
No 50
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.16 E-value=2.3e+02 Score=26.64 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhh
Q 047287 97 RTQYMLDTLTELQH-----KEQLLSEANKTLKQRTMTLRH 131 (210)
Q Consensus 97 K~qlm~~qi~~Lqk-----Ke~~L~eeN~~L~~k~~~~~~ 131 (210)
+.+.+.+.|..|.. ++..++|.++.|..|+.++..
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~ 559 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555433 356788888888888776553
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.04 E-value=1.3e+02 Score=18.52 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047287 72 GPLNSKELESLERQLDMSLKQIRSTR 97 (210)
Q Consensus 72 ~~Ls~~EL~~LE~qLe~sL~~IRsrK 97 (210)
+++|.+||-.||..|..--+++-.-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999988765544443333
No 52
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=23.80 E-value=1e+02 Score=21.24 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047287 105 LTELQHKEQLLSEANKTLKQRTMT 128 (210)
Q Consensus 105 i~~LqkKe~~L~eeN~~L~~k~~~ 128 (210)
|..|+.....|.++|..|+..+.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888899999999988543
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.09 E-value=1.1e+02 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047287 103 DTLTELQHKEQLLSEANKTLKQRTM 127 (210)
Q Consensus 103 ~qi~~LqkKe~~L~eeN~~L~~k~~ 127 (210)
+++..|++|...|..+|..|++++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888843
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.02 E-value=1.6e+02 Score=19.20 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 97 RTQYMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 97 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
+.+-+..+...|+.+...|..++..|+.-
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777778888888888766
No 55
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.94 E-value=1.4e+02 Score=18.47 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 74 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN 119 (210)
Q Consensus 74 Ls~~EL~~LE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN 119 (210)
+|-+||.|==..++.-+.+++ ++|.+||+|.+.|.+.-
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEEEA 39 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Confidence 344455444344444444443 45788888888887753
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.02 E-value=1.1e+02 Score=18.51 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047287 103 DTLTELQHKEQLLSEANKTLK 123 (210)
Q Consensus 103 ~qi~~LqkKe~~L~eeN~~L~ 123 (210)
+||..|+.|-..|+++.-.|-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888776653
No 57
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.11 E-value=1.1e+02 Score=24.86 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 100 YMLDTLTELQHKEQLLSEANKTLKQR 125 (210)
Q Consensus 100 lm~~qi~~LqkKe~~L~eeN~~L~~k 125 (210)
..++.+..|+.+...|+++|..|+..
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999887
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.08 E-value=2e+02 Score=19.45 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047287 103 DTLTELQHKEQLLSEANKTLKQRT 126 (210)
Q Consensus 103 ~qi~~LqkKe~~L~eeN~~L~~k~ 126 (210)
+++..|+.....|..+|..|+.++
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777773
No 59
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.69 E-value=1.2e+02 Score=16.67 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 047287 45 SQQEYLKLKARYEALQRSQR 64 (210)
Q Consensus 45 ~~~E~~kLk~~ie~Lq~~~R 64 (210)
.+.|+..|..++..|.+.+|
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666555
No 60
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.16 E-value=1.2e+02 Score=21.36 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 047287 44 SSQQEYLKLKARYEALQRSQRNLL 67 (210)
Q Consensus 44 ~~~~E~~kLk~~ie~Lq~~~R~l~ 67 (210)
....|+.+||+.|+.|.+..|-++
T Consensus 56 QideeV~~LKe~IdaLNK~Kke~l 79 (83)
T 1zke_A 56 QLSEEVERLKELINALNKIKKGLL 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999988765
Done!