Citrus Sinensis ID: 047288

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MDKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL
ccHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEccccEEEcccEEEEcccEEEEEccccccccEEEcccccccccccEEEEEccEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cccEEEEEHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccHHHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEEEccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEcccHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
MDKLVLIQLFIHFLIFSLNFVHGelitscsqtpypeicnhytatnflsnlelgqtqfsfrdlnLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLnrsmsssnpidsVTWLSAAIANQetckngftdfnlhshlqslpfmsgnFSKLLSNSLAITkstvssssipyaykrnggrrllvngfptwvsaADRRllqssgvgpkaDVVVAqdgsgnyktISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSgqgfiardmtfentagpanhqaVALRSGSDFSVFYScsfkgyqdtlYVYSQRqfyrncdiygtqdfiFGDAAVVLQSCNiyirkptggqkntvtaqgrkdpnentgiivhnsrvtaesgqgsfksylgrpwkqySRTVFMKCnidgvidpagwlpwsgsfalstlyygeymnigtgastsgrvkwsgyhvirspveagkftvgnflagnswipatgvpfdsgl
MDKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLnrsmsssnpiDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITkstvssssipyaykrnggrrlLVNGFPTWVSAADRRLlqssgvgpkADVVVAQDGSGNYKTISEGVAAavklgggskrvviyvkrgvyrenveiKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYirkptggqkntvtaqgrkdpnentgiivhnsrvtaesgqgsfksylgrPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFlagnswipatgvpfdsgl
MDKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL
***LVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLN********IDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRK**********************IIVH***********SFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGV******
*DKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNH*****************SFRDLNLKVTIDQAIH******************LALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFN**************FSKLLSNSLAITKS***********************FPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL
MDKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL
*DKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSS****************NGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFD***
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iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKLVLIQLFIHFLIFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVTTVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query508 2.2.26 [Sep-21-2011]
O49298554 Probable pectinesterase/p yes no 0.962 0.882 0.537 1e-157
O04887510 Pectinesterase 2 OS=Citru no no 0.933 0.929 0.5 1e-144
O22149511 Probable pectinesterase/p no no 0.893 0.888 0.527 1e-138
P83948584 Pectinesterase 3 OS=Citru no no 0.938 0.816 0.466 1e-127
O04886584 Pectinesterase 1 OS=Citru no no 0.938 0.816 0.465 1e-122
Q9FK05587 Probable pectinesterase/p no no 0.937 0.810 0.442 1e-115
Q9STY3594 Probable pectinesterase/p no no 0.927 0.792 0.432 1e-114
Q9M3B0598 Probable pectinesterase/p no no 0.925 0.785 0.444 1e-114
Q9FHN5536 Probable pectinesterase/p no no 0.911 0.863 0.430 1e-114
Q84R10519 Probable pectinesterase/p no no 0.814 0.797 0.471 1e-114
>sp|O49298|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1 Back     alignment and function desciption
 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/536 (53%), Positives = 366/536 (68%), Gaps = 47/536 (8%)

Query: 15  IFSLNFVHGELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHA 74
           + S++ ++   ITSC QTPYP +C+H+ + + L  L+     F+F DL +  T+DQA+  
Sbjct: 24  VVSISHLNAHFITSCKQTPYPSVCDHHMSNSPLKTLDDQTDGFTFHDLVVSSTMDQAVQL 83

Query: 75  HKLISTMDLS-SFNKLAKLALVDCKDLYDDTVNHLNRSMSS----SNPIDSVTWLSAAIA 129
           H+L+S++    S +K A  AL DC +LY+DT++ LN S  S    S+P D  T LSAAIA
Sbjct: 84  HRLVSSLKQHHSLHKHATSALFDCLELYEDTIDQLNHSRRSYGQYSSPHDRQTSLSAAIA 143

Query: 130 NQETCKNGFTDFNL-HSHLQSLPF-MSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNG-- 185
           NQ+TC+NGF DF L  S+ +  P     N +K +SNSLA+TK+   + ++   Y   G  
Sbjct: 144 NQDTCRNGFRDFKLTSSYSKYFPVQFHRNLTKSISNSLAVTKAAAEAEAVAEKYPSTGFT 203

Query: 186 -------------GRRLLV---NGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKT 229
                         RRLL+     FP+W   +DR+LL+ S    KAD+VVA+DGSG+Y +
Sbjct: 204 KFSKQRSSAGGGSHRRLLLFSDEKFPSWFPLSDRKLLEDSKTTAKADLVVAKDGSGHYTS 263

Query: 230 ISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVT------- 282
           I + V AA KL   ++R+VIYVK GVYRENV IK+S+KN+M+IGDGID+TIVT       
Sbjct: 264 IQQAVNAAAKLPRRNQRLVIYVKAGVYRENVVIKKSIKNVMVIGDGIDSTIVTGNRNVQD 323

Query: 283 ----------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLY 332
                      VSG GFIA+ +TFENTAGP  HQAVALRS SDFSVFY+CSFKGYQDTLY
Sbjct: 324 GTTTFRSATFAVSGNGFIAQGITFENTAGPEKHQAVALRSSSDFSVFYACSFKGYQDTLY 383

Query: 333 VYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGI 392
           ++S RQF RNC+IYGT DFIFGDA  +LQ+CNIY RKP  GQKNT+TAQ RK+P+E TG 
Sbjct: 384 LHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEPDETTGF 443

Query: 393 IVHNSRVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYY 452
           ++ +S V   S     ++YLGRPW+ +SRTVFMKCN+  ++ PAGWLPWSGSFALSTLYY
Sbjct: 444 VIQSSTVATAS-----ETYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYY 498

Query: 453 GEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 508
           GEY N G GAS SGRVKW GYHVI++  EA KFTV NFL GN WI ATGVP + GL
Sbjct: 499 GEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVPVNDGL 554
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q9STY3|PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHN5|PME59_ARATH Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1 Back     alignment and function description
>sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
255573722529 Pectinesterase-1 precursor, putative [Ri 0.990 0.950 0.685 0.0
224108303531 predicted protein [Populus trichocarpa] 0.992 0.949 0.667 0.0
147779798507 hypothetical protein VITISV_026596 [Viti 0.948 0.950 0.602 1e-178
356511311557 PREDICTED: LOW QUALITY PROTEIN: probable 0.988 0.901 0.615 1e-177
356511309513 PREDICTED: probable pectinesterase/pecti 0.946 0.937 0.613 1e-177
356524342526 PREDICTED: probable pectinesterase/pecti 0.986 0.952 0.611 1e-174
357521203500 Pectinesterase [Medicago truncatula] gi| 0.956 0.972 0.572 1e-161
297845378552 predicted protein [Arabidopsis lyrata su 0.962 0.885 0.548 1e-156
15220671554 pectinesterase 6 [Arabidopsis thaliana] 0.962 0.882 0.537 1e-155
312282745552 unnamed protein product [Thellungiella h 0.974 0.896 0.538 1e-154
>gi|255573722|ref|XP_002527782.1| Pectinesterase-1 precursor, putative [Ricinus communis] gi|223532817|gb|EEF34592.1| Pectinesterase-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/534 (68%), Positives = 429/534 (80%), Gaps = 31/534 (5%)

Query: 1   MDKLVLIQLFIHFLIFSLNFVHG-ELITSCSQTPYPEICNHYTATNFLSNLELGQTQFSF 59
           MDK+VL   ++HFL +SL  +HG +LITSC++TPYPE+CN++  TN L       T FSF
Sbjct: 1   MDKVVLAIFYVHFLFYSLELIHGSKLITSCARTPYPEVCNYFIETNLLQTQYQTGTTFSF 60

Query: 60  RDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPID 119
           RD +L VT++QAI AH+++S+M+  SF+K AKLA  DC +LY+DTV+HLNRS+SS+ PID
Sbjct: 61  RDQSLLVTMNQAIKAHQMVSSMNFKSFDKKAKLAWDDCMELYEDTVDHLNRSLSSTIPID 120

Query: 120 SVTWLSAAIANQETCKNGFTDFNL--HSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSI 177
           S TWLSAAIANQ+TC+NGF D NL    HL+S+P M  N S LLSNSLA+ K      S+
Sbjct: 121 SQTWLSAAIANQQTCQNGFIDLNLSYDDHLESMPIMLSNLSMLLSNSLAVNKV-----SV 175

Query: 178 PYAYKRNGGRRLLV-NGFPTWVSAADRRLLQSS-GVGPKADVVVAQDGSGNYKTISEGVA 235
           P+  K+  GRRLL+ +GFP+WVSA DRRLLQSS GV PKAD+VVAQDGSGNYKTI+E VA
Sbjct: 176 PHNTKQVNGRRLLIFDGFPSWVSATDRRLLQSSSGVAPKADIVVAQDGSGNYKTITEAVA 235

Query: 236 AAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVT------------- 282
           AAVK   GSKR+VIYVK+G+Y+EN+EIK+SMKNLM +GDGIDATIVT             
Sbjct: 236 AAVKQRSGSKRLVIYVKKGIYKENIEIKKSMKNLMFVGDGIDATIVTGSKNAKDGSTTFR 295

Query: 283 ----TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQ 338
                VSGQGFIA+ MTFENTAGP  HQAVALRSGSDFSVFY CSFKGYQDTLYVYSQRQ
Sbjct: 296 SATFAVSGQGFIAKGMTFENTAGPQKHQAVALRSGSDFSVFYGCSFKGYQDTLYVYSQRQ 355

Query: 339 FYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSR 398
           FYR+CDIYGT DFIFGDA  VLQ+CNIY+R+P  GQKNTVTAQGRKDPNENTGI++HNS 
Sbjct: 356 FYRDCDIYGTIDFIFGDAVAVLQNCNIYVRRPMNGQKNTVTAQGRKDPNENTGIVIHNSN 415

Query: 399 VTAESG----QGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGE 454
           V A S     QGSFK+YLGRPW++YSRT+FMK N+DG+IDPAGWLPWSG+FALSTLYYGE
Sbjct: 416 VMATSDMRPVQGSFKTYLGRPWQKYSRTLFMKSNLDGLIDPAGWLPWSGNFALSTLYYGE 475

Query: 455 YMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL 508
           YMN G+GAST+ RV W GYHVI    +AGKFTVGNFLAG+SWIP TGVPFDSGL
Sbjct: 476 YMNTGSGASTARRVNWPGYHVITKATDAGKFTVGNFLAGDSWIPGTGVPFDSGL 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108303|ref|XP_002314796.1| predicted protein [Populus trichocarpa] gi|222863836|gb|EEF00967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147779798|emb|CAN77092.1| hypothetical protein VITISV_026596 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511311|ref|XP_003524370.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 6-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|356511309|ref|XP_003524369.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 6-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|356524342|ref|XP_003530788.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357521203|ref|XP_003630890.1| Pectinesterase [Medicago truncatula] gi|355524912|gb|AET05366.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297845378|ref|XP_002890570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336412|gb|EFH66829.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220671|ref|NP_173733.1| pectinesterase 6 [Arabidopsis thaliana] gi|75278018|sp|O49298.1|PME6_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 6; Includes: RecName: Full=Pectinesterase inhibitor 6; AltName: Full=Pectin methylesterase inhibitor 6; Includes: RecName: Full=Pectinesterase 6; Short=PE 6; AltName: Full=Pectin methylesterase 6; Short=AtPME6; Flags: Precursor gi|9295687|gb|AAF86993.1|AC005292_2 F26F24.2 [Arabidopsis thaliana] gi|2829892|gb|AAC00600.1| putative pectinesterase [Arabidopsis thaliana] gi|17529058|gb|AAL38739.1| putative pectinesterase [Arabidopsis thaliana] gi|20259097|gb|AAM14264.1| putative pectinesterase [Arabidopsis thaliana] gi|110742328|dbj|BAE99088.1| putative pectinesterase [Arabidopsis thaliana] gi|332192233|gb|AEE30354.1| pectinesterase 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282745|dbj|BAJ34238.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query508
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.612 0.561 0.544 2.2e-120
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.905 0.900 0.502 7.1e-116
TAIR|locus:2077710529 PME61 "pectin methylesterase 6 0.962 0.924 0.449 1.1e-103
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.915 0.867 0.402 8.3e-90
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.440 0.361 0.563 6e-88
TAIR|locus:2053728518 ATPMEPCRD [Arabidopsis thalian 0.942 0.924 0.414 1.4e-87
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.917 0.862 0.423 2.3e-87
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.854 0.733 0.414 1.7e-84
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.618 0.534 0.517 1.2e-83
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.757 0.730 0.450 2.4e-83
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 862 (308.5 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
 Identities = 179/329 (54%), Positives = 221/329 (67%)

Query:   187 RRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKR 246
             R+LL +   T  + AD  ++   G G    +  A + +      ++ +   VK G   + 
Sbjct:   237 RKLLEDSKTT--AKADL-VVAKDGSGHYTSIQQAVNAAAKLPRRNQRLVIYVKAGVYREN 293

Query:   247 VVIYVKRGVYRENVEIKRSMKNLMLIG-----DGIDATIVTT--VSGQGFIARDMTFENT 299
             VVI  K+ +    V I   + + ++ G     DG       T  VSG GFIA+ +TFENT
Sbjct:   294 VVI--KKSIKNVMV-IGDGIDSTIVTGNRNVQDGTTTFRSATFAVSGNGFIAQGITFENT 350

Query:   300 AGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVV 359
             AGP  HQAVALRS SDFSVFY+CSFKGYQDTLY++S RQF RNC+IYGT DFIFGDA  +
Sbjct:   351 AGPEKHQAVALRSSSDFSVFYACSFKGYQDTLYLHSSRQFLRNCNIYGTVDFIFGDATAI 410

Query:   360 LQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQGSFKSYLGRPWKQY 419
             LQ+CNIY RKP  GQKNT+TAQ RK+P+E TG ++ +S V   S     ++YLGRPW+ +
Sbjct:   411 LQNCNIYARKPMSGQKNTITAQSRKEPDETTGFVIQSSTVATAS-----ETYLGRPWRSH 465

Query:   420 SRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSP 479
             SRTVFMKCN+  ++ PAGWLPWSGSFALSTLYYGEY N G GAS SGRVKW GYHVI++ 
Sbjct:   466 SRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTV 525

Query:   480 VEAGKFTVGNFLAGNSWIPATGVPFDSGL 508
              EA KFTV NFL GN WI ATGVP + GL
Sbjct:   526 TEAEKFTVENFLDGNYWITATGVPVNDGL 554
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077710 PME61 "pectin methylesterase 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053728 ATPMEPCRD [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49298PME6_ARATH3, ., 1, ., 1, ., 1, 10.53730.96250.8826yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921
4th Layer6.1.1.17LOW CONFIDENCE prediction!
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.6504.1
hypothetical protein (501 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_IX000478
hypothetical protein (217 aa)
  •     0.489
eugene3.41450001
hypothetical protein (176 aa)
  •     0.444

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-164
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-163
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-162
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-160
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-160
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-160
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-157
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-155
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-154
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-150
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-145
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-142
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-135
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-132
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-127
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-124
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-123
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-114
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-110
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-109
PLN02197588 PLN02197, PLN02197, pectinesterase 9e-83
PLN02432293 PLN02432, PLN02432, putative pectinesterase 4e-58
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-55
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-52
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-48
PLN02497331 PLN02497, PLN02497, probable pectinesterase 5e-47
PLN02671359 PLN02671, PLN02671, pectinesterase 6e-43
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-41
PLN02304379 PLN02304, PLN02304, probable pectinesterase 3e-40
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-36
PLN02634359 PLN02634, PLN02634, probable pectinesterase 9e-36
PLN02176340 PLN02176, PLN02176, putative pectinesterase 8e-32
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-26
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 5e-25
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-18
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 3e-17
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information 
 Score =  514 bits (1325), Expect = 0.0
 Identities = 194/300 (64%), Positives = 221/300 (73%), Gaps = 23/300 (7%)

Query: 216 DVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDG 275
           DVVVA+DGSG +KTI+E VAAA K    SKR VIYVK GVY+ENVE+ +   N+M +GDG
Sbjct: 1   DVVVAKDGSGQFKTINEAVAAAPK--KSSKRFVIYVKAGVYKENVEVPKKKTNVMFVGDG 58

Query: 276 IDATIVT-----------------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSV 318
              TI+T                  V G GFIARD+TFENTAGP  HQAVALR G+D SV
Sbjct: 59  PGKTIITGSLNFIDGGTTFRTATFAVVGDGFIARDITFENTAGPEKHQAVALRVGADLSV 118

Query: 319 FYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTV 378
           FY CSF GYQDTLYV+S RQFYR+CDI GT DFIFG+AA V Q+CNI  RKP  GQKNTV
Sbjct: 119 FYRCSFDGYQDTLYVHSNRQFYRDCDITGTVDFIFGNAAAVFQNCNIVARKPLPGQKNTV 178

Query: 379 TAQGRKDPNENTGIIVHNSRVTAESG----QGSFKSYLGRPWKQYSRTVFMKCNIDGVID 434
           TAQGR DPN+NTGI++ N R+TA+      +G+FK+YLGRPWK+YSRTV M+  ID VID
Sbjct: 179 TAQGRTDPNQNTGIVIQNCRITADPDLLPVKGTFKTYLGRPWKEYSRTVIMQSYIDDVID 238

Query: 435 PAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGN 494
           PAGWLPW+G FAL TLYYGEY N G GA TS RVKW GY VI S  EA KFTVGNF+ GN
Sbjct: 239 PAGWLPWNGDFALDTLYYGEYNNSGPGAGTSKRVKWPGYKVILSDEEALKFTVGNFIGGN 298

Length = 298
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 508
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.92
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.89
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.33
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.82
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.63
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.24
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.11
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.03
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.39
PRK10531422 acyl-CoA thioesterase; Provisional 97.17
KOG1777 625 consensus Putative Zn-finger protein [General func 97.1
PLN02793443 Probable polygalacturonase 96.89
PLN02480343 Probable pectinesterase 96.76
PLN02218431 polygalacturonase ADPG 96.76
PLN03003456 Probable polygalacturonase At3g15720 96.73
PLN02432293 putative pectinesterase 96.57
PLN02773317 pectinesterase 96.56
PLN02682369 pectinesterase family protein 96.42
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.23
PLN02671359 pectinesterase 96.23
PLN02497331 probable pectinesterase 96.14
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.05
PLN02665366 pectinesterase family protein 96.02
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.98
PLN02634359 probable pectinesterase 95.98
PLN02916502 pectinesterase family protein 95.85
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.82
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.8
PLN02155394 polygalacturonase 95.78
PLN03010409 polygalacturonase 95.76
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.76
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.71
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.63
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.62
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.6
PLN02304379 probable pectinesterase 95.55
PLN02176340 putative pectinesterase 95.55
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.53
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.52
PLN02197588 pectinesterase 95.41
PLN02301548 pectinesterase/pectinesterase inhibitor 95.38
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.37
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.29
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.22
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.09
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.04
smart00656190 Amb_all Amb_all domain. 95.04
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.97
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.9
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.79
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.65
PLN02314586 pectinesterase 94.6
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.69
PLN02188404 polygalacturonase/glycoside hydrolase family prote 93.0
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.65
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.54
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.46
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.45
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.73
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 89.99
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 87.59
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 87.58
PLN02218431 polygalacturonase ADPG 86.81
PLN02793443 Probable polygalacturonase 86.64
PLN02155394 polygalacturonase 84.39
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 80.57
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=3.7e-127  Score=1033.93  Aligned_cols=468  Identities=47%  Similarity=0.778  Sum_probs=431.5

Q ss_pred             ccccCCCChhhHHHHhhhcccCCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCHhHHHHHHHHHHHHHHH
Q 047288           27 TSCSQTPYPEICNHYTATNFLSNLELGQTQFSFRDLNLKVTIDQAIHAHKLISTMDLS--SFNKLAKLALVDCKDLYDDT  104 (508)
Q Consensus        27 ~~C~~T~yp~lC~~sL~~~~~~~s~~~~~~~~L~~~al~~a~~~a~~a~~~i~~l~~~--~~~~~~~~aL~DC~e~y~da  104 (508)
                      ++|++|+||++|+++|+++|.  +...+|+ +|++++|++++++++++...+.++...  .++++.+.||+||+|+|+++
T Consensus        69 ~~C~~T~Yp~lC~sSLs~~~~--s~~~~p~-~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~~k~AL~DC~ELldda  145 (565)
T PLN02468         69 AVCDVTLYKDSCYETLAPAPK--ASQLQPE-ELFKYAVKVAINELSKASQAFSNSEGFLGVKDNMTNAALNACQELLDLA  145 (565)
T ss_pred             HhccCCCChHHHHHHHhhcCC--cccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHH
Confidence            679999999999999999886  4556898 999999999999999999888877542  46889999999999999999


Q ss_pred             HHHHHhhhhC-------CCCchhHHHHHHHHhhHHhhhcccCCCCcccccccccccchhHHHHHHHHhhhhcccCCCCCc
Q 047288          105 VNHLNRSMSS-------SNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSI  177 (508)
Q Consensus       105 vd~L~~a~~a-------~~~~d~~TwLSAAlT~~~TC~DgF~e~~~~~~~~~l~~~~~~~~~L~SnaLaiv~~l~~~~~~  177 (508)
                      +++|++++++       +.++|++||||||||+++||+|||++.++++.|   ...+.++.||+||+|||++.+....++
T Consensus       146 id~L~~Sl~~l~~~~~~~~~dDl~TWLSAAlTnq~TClDGF~e~~vk~~~---~~~l~n~~eLtSNaLAIi~~l~~~~~~  222 (565)
T PLN02468        146 IDNLNNSLTSSGGVSVLDNVDDLRTWLSSAGTYQETCIDGLAEPNLKSFG---ENHLKNSTELTSNSLAIITWIGKIADS  222 (565)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHhcchhhhhhhhcccCchHHH---HHHHHHHHHHHHHHHHHhhcccccccc
Confidence            9999999875       457899999999999999999999987766664   488999999999999999998765432


Q ss_pred             ccccccCCCccccc---CCcCcccccccccccccCCCCCcceEEEcCCCCCCCcCHHHHHHHhhccCCCcceEEEEEecc
Q 047288          178 PYAYKRNGGRRLLV---NGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRG  254 (508)
Q Consensus       178 ~~~~~~~~~r~~~~---~~~p~w~~~~~~~ll~~~~~~~~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G  254 (508)
                       ++.    .||++.   ++||.|++..|||||+..+...+++++|++||+|+|+|||+||+++|+  ++++|++|+|+||
T Consensus       223 -~~~----~r~~~~~~~~~~p~w~~~~~r~ll~~~~~~~~~~~~Va~dGsg~f~tI~~Av~a~p~--~~~~~~vI~ik~G  295 (565)
T PLN02468        223 -VKL----RRRLLTYADDAVPKWLHHEGRKLLQSSDLKKKADIVVAKDGSGKYKTISEALKDVPE--KSEKRTIIYVKKG  295 (565)
T ss_pred             -ccc----cCccccccCCCCcccccccchhhhcCCcccCCCcEEECCCCCCCccCHHHHHHhchh--cCCCcEEEEEeCC
Confidence             111    455554   489999999999999876545678999999999999999999999999  7788999999999


Q ss_pred             eeeeeeeeeccCCCEEEEecCCCcEEEE-----------------EEecCcEEEEccccccCCCCCCcceEEEEecCCce
Q 047288          255 VYRENVEIKRSMKNLMLIGDGIDATIVT-----------------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFS  317 (508)
Q Consensus       255 ~Y~E~v~I~~~~~~itl~G~~~~~t~I~-----------------~v~~~~~~~~~lti~Ns~g~~~~qavAl~~~~d~~  317 (508)
                      +|+|+|.|+++|+||+|+|+|.++|+|+                 .|.+++|+++||||+|++|+.++|||||++.+|++
T Consensus       296 vY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~  375 (565)
T PLN02468        296 VYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLS  375 (565)
T ss_pred             ceEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcE
Confidence            9999999999999999999999999997                 57899999999999999999999999999999999


Q ss_pred             EEEeeEEeccccEEEecCccEEeEccEEeccceeEeccceEEEEeeEEEEecCCCCCceEEEeCCCCCCCCceeEEEEcc
Q 047288          318 VFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNS  397 (508)
Q Consensus       318 ~~~nc~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c  397 (508)
                      +||||+|+|||||||++.+||||++|+|+|+||||||+|+++||||+|+++++.+++.++||||+|+++++++||||++|
T Consensus       376 ~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c  455 (565)
T PLN02468        376 VFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNC  455 (565)
T ss_pred             EEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999998878889999999999999999999999


Q ss_pred             EEeecCCCCCceeEeeccCCCCceEEEEeccCCCcccCCCCCCCCCCCCCCccEEEEecccCCCCCCCCccccccccccC
Q 047288          398 RVTAESGQGSFKSYLGRPWKQYSRTVFMKCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIR  477 (508)
Q Consensus       398 ~i~~~~~~~~~~~~LGRpW~~~~~~v~~~s~~~~~i~p~Gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~R~~w~~~~~~~  477 (508)
                      +|+++++....++||||||++|+|||||+|+|+++|+|+||.+|+++..+++++|+||+|+|||+++++||+|++|++| 
T Consensus       456 ~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~g~~~l-  534 (565)
T PLN02468        456 TILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSLIDPKGWLPWTGDTAPPTIFYAEFQNFGPGASTKNRVKWKGLKTI-  534 (565)
T ss_pred             EEecCCCccccceeeecCCCCCceEEEEecccCCeEccccCCCCCCCCCcCceEEEEeecccCCCCcCCCccccccccC-
Confidence            9999876556789999999999999999999999999999999998888899999999999999999999999999987 


Q ss_pred             CHHHHhccchhccccCCCCccCCCCCCCCCC
Q 047288          478 SPVEAGKFTVGNFLAGNSWIPATGVPFDSGL  508 (508)
Q Consensus       478 ~~~eA~~~t~~~~~~g~~W~p~~~~~~~~~~  508 (508)
                      +.+||.+||+++||+|+.|+|.++|||..||
T Consensus       535 ~~~ea~~ft~~~fi~g~~Wl~~~~vp~~~gl  565 (565)
T PLN02468        535 TNKEASKFTVKPFIDGGKWLPATGVSFKPGL  565 (565)
T ss_pred             CHHHHhhhhHHhhcCCCCcCCCCCCCcCCCC
Confidence            5679999999999999999999999999997

>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-102
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 4e-88
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-21
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-21
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-20
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 5e-15
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 226/322 (70%), Gaps = 25/322 (7%)
Query: 208 SSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMK 267
           SS VGP  +VVVA DGSG+YKT+SE VAAA +      R VI +K GVYRENV++ +  K
Sbjct: 2   SSTVGP--NVVVAADGSGDYKTVSEAVAAAPE--DSKTRYVIRIKAGVYRENVDVPKKKK 57
Query: 268 NLMLIGDGIDATIVT---------------TVS--GQGFIARDMTFENTAGPANHQAVAL 310
           N+M +GDG  +TI+T               TV+  G GF+ARD+TF+NTAG A HQAVAL
Sbjct: 58  NIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVAL 117
Query: 311 RSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKP 370
           R GSD S FY C    YQD+LYV+S RQF+ NC I GT DFIFG+AAVVLQ C+I+ R+P
Sbjct: 118 RVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRP 177
Query: 371 TGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESG----QGSFKSYLGRPWKQYSRTVFMK 426
             GQKN VTAQGR DPN+NTGI++  SR+ A S     Q SF +YLGRPWK+YSRTV M+
Sbjct: 178 GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237
Query: 427 CNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFT 486
            +I  VI+PAGW PW G+FAL TLYYGEY N G GA+TSGRV W G+ VI S  EA  FT
Sbjct: 238 SSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFT 297
Query: 487 VGNFLAGNSWIPATGVPFDSGL 508
            G+F+AG SW+ AT  PF  GL
Sbjct: 298 PGSFIAGGSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query508
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-162
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-160
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-122
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-118
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 4e-78
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-28
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 7e-27
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 6e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  461 bits (1187), Expect = e-162
 Identities = 164/316 (51%), Positives = 202/316 (63%), Gaps = 23/316 (7%)

Query: 214 KADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIG 273
            A+ VVAQDG+G+Y+T++E VAAA        R VIYVKRG Y+ENVE+  +  NLM++G
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPD--KSKTRYVIYVKRGTYKENVEVASNKMNLMIVG 59

Query: 274 DGIDATIVT-----------------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDF 316
           DG+ AT +T                    GQGFI +D+  +NTAGPA  QAVALR G+D 
Sbjct: 60  DGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADM 119

Query: 317 SVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRKPTGGQKN 376
           SV   C    YQDTLY +SQRQFYR+  + GT DFIFG+AAVV Q C +  RKP   Q+N
Sbjct: 120 SVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQN 179

Query: 377 TVTAQGRKDPNENTGIIVHNSRVTAESG----QGSFKSYLGRPWKQYSRTVFMKCNIDGV 432
            VTAQGR DPN+ TG  +    + A S        F +YLGRPWK+YSRTV M+  + G+
Sbjct: 180 MVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL 239

Query: 433 IDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLA 492
           I+PAGW  W G FAL TLYYGE+MN G GA TS RVKW GYHVI  P +A  FTV   + 
Sbjct: 240 INPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299

Query: 493 GNSWIPATGVPFDSGL 508
           G SW+ +TGV +  GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.95
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.95
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.54
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.33
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.82
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.27
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.93
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.49
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.43
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.42
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.39
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.21
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.14
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.12
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.06
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.99
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.94
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.91
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.91
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.77
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.74
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.68
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.68
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.56
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.51
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.44
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.43
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.38
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.21
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.19
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.12
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.59
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.3
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.81
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.8
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.7
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 94.31
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 91.41
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 91.3
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 91.03
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 90.83
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.72
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 90.67
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 90.17
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 90.14
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.09
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 87.89
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 86.07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 83.49
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 83.21
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 82.15
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 82.01
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=5.5e-87  Score=679.44  Aligned_cols=293  Identities=56%  Similarity=0.959  Sum_probs=279.3

Q ss_pred             cceEEEcCCCCCCCcCHHHHHHHhhccCCCcceEEEEEecceeeeeeeeeccCCCEEEEecCCCcEEEE-----------
Q 047288          214 KADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVT-----------  282 (508)
Q Consensus       214 ~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~~~~~t~I~-----------  282 (508)
                      +++++|+++|+|+|+|||+||++||+  +++.|++|+|+||+|+|+|.|++.|++|+|+|++.++|+|+           
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~--~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t   79 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPD--KSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTT   79 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCS--SCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCS
T ss_pred             CceEEECCCCCCCcccHHHHHhhccc--CCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcc
Confidence            46899999999999999999999999  88899999999999999999998889999999999999997           


Q ss_pred             ------EEecCcEEEEccccccCCCCCCcceEEEEecCCceEEEeeEEeccccEEEecCccEEeEccEEeccceeEeccc
Q 047288          283 ------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDA  356 (508)
Q Consensus       283 ------~v~~~~~~~~~lti~Ns~g~~~~qavAl~~~~d~~~~~nc~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG~~  356 (508)
                            .|.+++|+++||||+|++++.++||+||++.+|+++|+||+|+|||||||++++||||++|+|+|+||||||+|
T Consensus        80 ~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~  159 (317)
T 1xg2_A           80 FRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNA  159 (317)
T ss_dssp             GGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECC
T ss_pred             cceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCc
Confidence                  57899999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeEEEEecCCCCCceEEEeCCCCCCCCceeEEEEccEEeecCCC----CCceeEeeccCCCCceEEEEeccCCCc
Q 047288          357 AVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQ----GSFKSYLGRPWKQYSRTVFMKCNIDGV  432 (508)
Q Consensus       357 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~----~~~~~~LGRpW~~~~~~v~~~s~~~~~  432 (508)
                      +++||+|+|+++++..++.++||||+|+++++++||||+||+|+++++.    ..+++||||||++|+|+||++|+|+++
T Consensus       160 ~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~  239 (317)
T 1xg2_A          160 AVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL  239 (317)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCc
Confidence            9999999999998766778999999999999999999999999998753    234899999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCccEEEEecccCCCCCCCCccccccccccCCHHHHhccchhccccCCCCccCCCCCCCCCC
Q 047288          433 IDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL  508 (508)
Q Consensus       433 i~p~Gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~R~~w~~~~~~~~~~eA~~~t~~~~~~g~~W~p~~~~~~~~~~  508 (508)
                      |+|+||.+|+++.++++++|+||+|+|||+++++||+|+++++|++++||++|++++||+|++|+|.+++||..||
T Consensus       240 I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          240 INPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             BCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             ccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999999888899999999999999999999999999999988899999999999999999999999999986
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 508
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-139
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-85
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-25
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 1e-20
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  401 bits (1031), Expect = e-139
 Identities = 186/323 (57%), Positives = 224/323 (69%), Gaps = 25/323 (7%)

Query: 207 QSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSM 266
           +SS VGP  +VVVA DGSG+YKT+SE VAAA +      R VI +K GVYRENV++ +  
Sbjct: 1   ESSTVGP--NVVVAADGSGDYKTVSEAVAAAPE--DSKTRYVIRIKAGVYRENVDVPKKK 56

Query: 267 KNLMLIGDGIDATIVT-----------------TVSGQGFIARDMTFENTAGPANHQAVA 309
           KN+M +GDG  +TI+T                    G GF+ARD+TF+NTAG A HQAVA
Sbjct: 57  KNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVA 116

Query: 310 LRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFGDAAVVLQSCNIYIRK 369
           LR GSD S FY C    YQD+LYV+S RQF+ NC I GT DFIFG+AAVVLQ C+I+ R+
Sbjct: 117 LRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR 176

Query: 370 PTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESG----QGSFKSYLGRPWKQYSRTVFM 425
           P  GQKN VTAQGR DPN+NTGI++  SR+ A S     Q SF +YLGRPWK+YSRTV M
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236

Query: 426 KCNIDGVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKF 485
           + +I  VI+PAGW PW G+FAL TLYYGEY N G GA+TSGRV W G+ VI S  EA  F
Sbjct: 237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296

Query: 486 TVGNFLAGNSWIPATGVPFDSGL 508
           T G+F+AG SW+ AT  PF  GL
Sbjct: 297 TPGSFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query508
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.86
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.52
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.66
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.44
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.41
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.88
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.72
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.47
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.39
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.26
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.14
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.88
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.74
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.56
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.5
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.44
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 89.95
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 89.12
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.19
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 87.21
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 82.31
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.2e-90  Score=701.54  Aligned_cols=295  Identities=61%  Similarity=1.044  Sum_probs=282.4

Q ss_pred             CCcceEEEcCCCCCCCcCHHHHHHHhhccCCCcceEEEEEecceeeeeeeeeccCCCEEEEecCCCcEEEE---------
Q 047288          212 GPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLMLIGDGIDATIVT---------  282 (508)
Q Consensus       212 ~~~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~~~~~t~I~---------  282 (508)
                      ..+++++|++||+|+|+|||+||+++|+  +++.|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+         
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~--~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPE--DSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCS--SCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCcc--CCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            3578899999999999999999999999  88899999999999999999999999999999999999998         


Q ss_pred             --------EEecCcEEEEccccccCCCCCCcceEEEEecCCceEEEeeEEeccccEEEecCccEEeEccEEeccceeEec
Q 047288          283 --------TVSGQGFIARDMTFENTAGPANHQAVALRSGSDFSVFYSCSFKGYQDTLYVYSQRQFYRNCDIYGTQDFIFG  354 (508)
Q Consensus       283 --------~v~~~~~~~~~lti~Ns~g~~~~qavAl~~~~d~~~~~nc~~~g~QdTl~~~~~r~~~~~c~I~G~vDfIfG  354 (508)
                              .|.+++|+++||||+|++++.++|||||++.+|+++||||+|+|||||||+++|||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence                    678999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEeeEEEEecCCCCCceEEEeCCCCCCCCceeEEEEccEEeecCCC----CCceeEeeccCCCCceEEEEeccCC
Q 047288          355 DAAVVLQSCNIYIRKPTGGQKNTVTAQGRKDPNENTGIIVHNSRVTAESGQ----GSFKSYLGRPWKQYSRTVFMKCNID  430 (508)
Q Consensus       355 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~----~~~~~~LGRpW~~~~~~v~~~s~~~  430 (508)
                      +|+++||+|+|+++.+..++.++||||+|+++.+++||||++|+|+++++.    ..+++||||||++++||||++|+|+
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~  241 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT  241 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccc
Confidence            999999999999998777778999999999999999999999999998862    3457899999999999999999999


Q ss_pred             CcccCCCCCCCCCCCCCCccEEEEecccCCCCCCCCccccccccccCCHHHHhccchhccccCCCCccCCCCCCCCCC
Q 047288          431 GVIDPAGWLPWSGSFALSTLYYGEYMNIGTGASTSGRVKWSGYHVIRSPVEAGKFTVGNFLAGNSWIPATGVPFDSGL  508 (508)
Q Consensus       431 ~~i~p~Gw~~w~~~~~~~~~~f~Ey~~~G~ga~~~~R~~w~~~~~~~~~~eA~~~t~~~~~~g~~W~p~~~~~~~~~~  508 (508)
                      ++|.|+||.+|++....++++|+||+|+|||+++++||+|++++++++++||++|+.++||+|++|+|.++|||..||
T Consensus       242 ~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999999888899999999999999999999999999988889999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure