BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047290
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5
PE=1 SV=1
Length = 175
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 117/183 (63%), Gaps = 26/183 (14%)
Query: 5 EEEQGIKLFGKTITLHGRQVKEEQNQRG---------------SDQPQAVVDKRPDKIIP 49
++ QGIKLFGKTIT + + + + S +KRPDKIIP
Sbjct: 4 QDSQGIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIP 63
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGRGLPD 109
CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK+KPPGR
Sbjct: 64 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRVGGF 123
Query: 110 GCLYDVASGDHHHQLLHHQLDQFDLEGVFVEDWHPAAAAHGYGGFQNAFPVKRRRSNSGG 169
L A+G +DQ +L+ + VE+W A A+H GGF++ FPVKR R + G
Sbjct: 124 AELLGAATG---------AVDQVELDALLVEEWRAATASH--GGFRHDFPVKRLRCYTDG 172
Query: 170 QLC 172
Q C
Sbjct: 173 QSC 175
>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1
Length = 170
Score = 186 bits (471), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 119/180 (66%), Gaps = 25/180 (13%)
Query: 5 EEEQGIKLFGKTITLHGRQVKEEQNQ-----------RGSDQPQAVVDKRPDKIIPCPRC 53
++ QGIKLFGKTI + R +K E+ R S +KRPDKII CPRC
Sbjct: 4 QDSQGIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRC 63
Query: 54 KSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGRGLPDGCLY 113
KSMETKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVPVGAGRRK+KPPGR + G L
Sbjct: 64 KSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGR-VVVGMLG 122
Query: 114 DVASGDHHHQLLHHQLDQFDLEGVFVEDW-HPAAAAHGYGGFQNAFPVKRRRSNSGGQLC 172
D +G +L++ G+ VE+W H AAAAH G F++ FP+KR R S GQ C
Sbjct: 123 D-GNGVRQVELIN---------GLLVEEWQHAAAAAH--GSFRHDFPMKRLRCYSDGQSC 170
>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2
Length = 298
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 75/105 (71%), Gaps = 7/105 (6%)
Query: 4 DEEEQGIKLFGKTI----TLHGRQVKEEQNQRGSDQPQAVVDK---RPDKIIPCPRCKSM 56
+ ++ IKLFG I L +EE+NQ + Q+ DK +P KI+PCPRC SM
Sbjct: 3 ETKDPAIKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSM 62
Query: 57 ETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
ETKFCY+NNYNVNQPRHFCK CQRYWT+GG +R+VP+GAGRRK K
Sbjct: 63 ETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNK 107
>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
Length = 457
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 2 GNDEEEQGIKLFGKTITLHGRQVKEEQNQRGSDQPQAVVDKRPDKIIPCPRCKSMETKFC 61
ND + KT T + EE Q + K+PDKI+PCPRC SMETKFC
Sbjct: 94 SNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKL--KKPDKILPCPRCNSMETKFC 151
Query: 62 YFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPG 104
Y+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK K P
Sbjct: 152 YYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPA 194
>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2
Length = 448
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 27 EQNQRGSDQPQAVVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGG 86
E NQ+ + P K+P KI+PCPRCKSMETKFCY+NNYN+NQPRHFCK CQRYWTAGG
Sbjct: 91 EDNQQTT--PDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGG 148
Query: 87 ALRNVPVGAGRRKTK 101
+RNVPVGAGRRK K
Sbjct: 149 TMRNVPVGAGRRKNK 163
>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1
Length = 399
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 67/94 (71%), Gaps = 12/94 (12%)
Query: 37 QAVVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAG 96
++ K+PDK+IPCPRC+S TKFCY+NNYNVNQPR+FC+ CQRYWTAGG++RNVPVG+G
Sbjct: 121 KSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSG 180
Query: 97 RRKTKPPGRGLPDGCLYDVASGDHHHQLLHHQLD 130
RRK K G P S +H+ Q+ D
Sbjct: 181 RRKNK----GWP--------SSNHYLQVTSEDCD 202
>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3
PE=2 SV=1
Length = 366
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 59/69 (85%)
Query: 33 SDQPQAVVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP 92
S++ + K+PDKI+PCPRC S +TKFCY+NNYNVNQPRHFC+ CQRYWTAGG++R VP
Sbjct: 90 SEEEKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVP 149
Query: 93 VGAGRRKTK 101
VG+GRRK K
Sbjct: 150 VGSGRRKNK 158
>sp|P38564|MNB1A_MAIZE Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2
Length = 238
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 44/51 (86%)
Query: 49 PCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 99
PCPRC S +TKFCY+NNYN +QPRHFCKGC+RYWT GG LRNVPVG G RK
Sbjct: 48 PCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRK 98
>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7
PE=1 SV=2
Length = 296
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 51/75 (68%), Gaps = 8/75 (10%)
Query: 43 RPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK- 101
RP + + CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRNVPVG RK K
Sbjct: 69 RPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKR 128
Query: 102 -------PPGRGLPD 109
P LPD
Sbjct: 129 SSTPLASPSNPKLPD 143
>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2
PE=2 SV=2
Length = 340
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 45/56 (80%)
Query: 44 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 99
P+ + CPRC S TKFCYFNNYN+ QPRHFCK C+RYWT GGALRNVPVG G R+
Sbjct: 90 PEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRR 145
>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7
PE=2 SV=1
Length = 194
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGRGL 107
+ CPRC S TKFCY+NNYN++QPRHFCK C+RYWT GGALRN+PVG G RK+
Sbjct: 33 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGSS 92
Query: 108 PDGCLYD--VASGDHHH 122
P L + VA HH
Sbjct: 93 PSSNLKNQTVAEKPDHH 109
>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4
PE=2 SV=1
Length = 330
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 47/58 (81%)
Query: 44 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
P+ + CPRC+S TKFCYFNNY++ QPRHFCK C+RYWT GGALRNVPVG G R+ +
Sbjct: 85 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNR 142
>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4
PE=2 SV=2
Length = 307
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK-PPGRG 106
+ CPRC S+ TKFCY+NNYN++QPRHFCK C+RYWT GG LRNVPVG G RK K +
Sbjct: 51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQ 110
Query: 107 LPDGCLYD--VASGDHHH 122
+P D + D HH
Sbjct: 111 VPSSSSADKPTTTQDDHH 128
>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6
PE=2 SV=2
Length = 342
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 47/57 (82%)
Query: 45 DKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
D+ + CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRN+PVG G RK K
Sbjct: 50 DQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNK 106
>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6
PE=1 SV=2
Length = 323
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 44 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
P+ + CPRC S TKFCYFNNY++ QPRHFCK C+RYWT GG+LRNVPVG G R+ K
Sbjct: 72 PEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNK 129
>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1
PE=1 SV=2
Length = 331
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 46/58 (79%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGR 105
+ CPRC S TKFCY+NNYN+ QPRHFCKGC+RYWT GGALRNVPVG G R+ G+
Sbjct: 77 LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGK 134
>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7
PE=2 SV=1
Length = 316
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
+ CPRC S TKFCY+NNY+++QPRHFCK C+RYWT GGALRNVP+G G RKTK
Sbjct: 41 LKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTK 94
>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1
PE=2 SV=1
Length = 399
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 44 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
P+ + CPRC S TKFCYFNNY++ QPRHFCK C+RYWT GGALR+VPVG G R+ K
Sbjct: 91 PETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNK 148
>sp|Q39088|DOF34_ARATH Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4
PE=1 SV=2
Length = 253
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKT 100
+PCPRC S TKFCY+NNYN +QPRHFCK C+RYWT GG LR+VPVG G RK+
Sbjct: 30 LPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKS 82
>sp|Q94AR6|DOF31_ARATH Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1
PE=2 SV=2
Length = 204
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 99
+ CPRC S TKFCY+NNYN++QPRHFCK C+RYWT GGALRNVPVG G RK
Sbjct: 29 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRK 80
>sp|Q84K52|DOF47_ARATH Dof zinc finger protein DOF4.7 OS=Arabidopsis thaliana GN=DOF4.7
PE=2 SV=1
Length = 246
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 5/72 (6%)
Query: 36 PQAVVDKRPDK----IIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNV 91
P+ + +K P ++ CPRC S+ TKFCY+NNY+++QPRH+CK C+RYWT GGALRNV
Sbjct: 25 PRQINNKEPSPATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNV 84
Query: 92 PV-GAGRRKTKP 102
P+ G+ R K KP
Sbjct: 85 PIGGSTRNKNKP 96
>sp|Q9SVC5|DOF35_ARATH Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5
PE=3 SV=1
Length = 247
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Query: 46 KIIP-CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP 103
+I P CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRNVPVG G RK++ P
Sbjct: 22 EITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRP 80
>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3
PE=2 SV=1
Length = 257
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 27 EQNQRGSDQPQAVVDKRPDKI-IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAG 85
+ +Q+ AV +P ++ + CPRC S TKFCY+NNY++ QPR+FCK C+RYWT G
Sbjct: 33 DNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKG 92
Query: 86 GALRNVPVGAGRRKTK 101
G LRN+PVG G RK K
Sbjct: 93 GTLRNIPVGGGCRKNK 108
>sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5
PE=2 SV=3
Length = 369
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 43 RPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVG 94
RP + + CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRNVPVG
Sbjct: 75 RPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVG 126
>sp|Q9FZA4|DOF14_ARATH Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4
PE=2 SV=1
Length = 311
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 43/54 (79%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
+ CPRC S TKFCY+NNY+++QPRHFCK C+RYWT GG LRNVPVG RK K
Sbjct: 27 LKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNK 80
>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8
PE=2 SV=1
Length = 352
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 30 QRGSDQPQAVVDK--RP--DKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAG 85
Q P V++ RP D+ + CPRC S+ TKFCY+NNY++ QPR+FCK C+RYWTAG
Sbjct: 27 QSNPPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAG 86
Query: 86 GALRNVPVGAG 96
G+LRN+PVG G
Sbjct: 87 GSLRNIPVGGG 97
>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1
Length = 328
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 5 EEEQGIKLFGKTITLHGRQVKEEQNQRGSDQPQAVVDKRPDKIIP----CPRCKSMETKF 60
+Q + L I R K+ R Q +++P +P CPRC S TKF
Sbjct: 16 NNQQAVMLSSPIIKEEARDPKQT---RAMPQIGGSGERKPRPQLPEALKCPRCDSNNTKF 72
Query: 61 CYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
CY+NNY+++QPR+FCK C+RYWT GG LRNVP+G G RK K
Sbjct: 73 CYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNK 113
>sp|Q9M161|DOF41_ARATH Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1
PE=2 SV=2
Length = 294
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 38 AVVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGR 97
+ RP + CPRC S TKFCY+NNY++ QPR+ CK C+RYWT GG+LRNVPVG G
Sbjct: 58 TTMSTRPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGS 117
Query: 98 RKTK 101
RK K
Sbjct: 118 RKNK 121
>sp|P68349|DOF12_ARATH Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2
PE=2 SV=1
Length = 260
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 99
CPRC S TKFCY+NNY+++QPR+FCKGC+RYWT GG+LRN+PVG G RK
Sbjct: 40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRK 89
>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2
PE=2 SV=1
Length = 245
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 44 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
P++ + CPRC S TKFCY+NNY+++QPR+FCK C+RYWT GG LRN+P+G RK K
Sbjct: 36 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHK 93
>sp|Q9FGD6|DOF58_ARATH Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8
PE=2 SV=1
Length = 225
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 48 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGRGL 107
+ CPRC+S TKFCY+NNYN +QPRHFCK C+RYWT GG LR++PVG RK+ R
Sbjct: 32 LSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTY 91
Query: 108 PDGCLYDVA 116
V
Sbjct: 92 SSAATTSVV 100
>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1
PE=2 SV=2
Length = 288
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
CPRC+S TKFCY+NNY+++QPR+FCK C+RYWT GG LRNVPVG G R+ K
Sbjct: 50 CPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNK 101
>sp|Q9SX97|DOF16_ARATH Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana GN=DOF1.6
PE=2 SV=1
Length = 209
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 35 QPQAVVDKRPD--KIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP 92
QP P+ + +PCPRC S TKFCY+NNYN+ QPR++CK C+RYWT GG LR+VP
Sbjct: 14 QPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRRYWTQGGTLRDVP 73
Query: 93 VGAG 96
VG G
Sbjct: 74 VGGG 77
>sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6
PE=2 SV=2
Length = 372
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRR 98
CPRC+S TKFCY+NNY+++QPR+FCK C+RYWT GG LRN+PVG G R
Sbjct: 75 CPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCR 123
>sp|Q9SUA9|DOF44_ARATH Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4
PE=3 SV=1
Length = 210
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 42 KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
KRP CPRC S TKFC++NNY+ +QPR+FCK C+RYWT GGALRN+PVG RK
Sbjct: 18 KRPPPSRVCPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSCRK-- 75
Query: 102 PPGRGLPDGCLYDVASGDHHHQLLHHQLDQFDLEGVFVEDWHPAAAA--------HGY-- 151
P R D + + H Q FV + +++A GY
Sbjct: 76 -PKRLKVDQSSISEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134
Query: 152 --GGFQNAFPVKRRRS 165
G N P++ R+
Sbjct: 135 ELHGVTNLLPIQSFRT 150
>sp|Q9SUB0|DOF43_ARATH Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3
PE=3 SV=1
Length = 232
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
C RC S TKFCY+NNY+ QPR+FCK C+RYWT GGALRNVP+G R +
Sbjct: 27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGGSSRAKR 78
>sp|O49550|DOF45_ARATH Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5
PE=3 SV=1
Length = 249
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 101
C RC S TKFCY+NNY QPR+FCK C+RYWT GGALRN+P+G R +
Sbjct: 27 CARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIPIGGSSRAKR 78
>sp|Q9SUB1|DOF42_ARATH Dof zinc finger protein DOF4.2 OS=Arabidopsis thaliana GN=DOF4.2
PE=3 SV=1
Length = 194
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 50 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPG---RG 106
CPRC S +T+F YFNN +QPR+ CK C R WT GG LRN+PV K+ P
Sbjct: 23 CPRCYSDQTRFSYFNNNKKSQPRYKCKNCCRCWTHGGVLRNIPVTGICDKSNLPKIDQSS 82
Query: 107 LPDGCLYDVASGDH 120
+ L ++ G+H
Sbjct: 83 VSQMILAEIQQGNH 96
>sp|Q6Q899|DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58 OS=Mus musculus GN=Ddx58
PE=1 SV=2
Length = 926
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 13 FGKTITLHGRQVKEEQNQRGSDQPQAVVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPR 72
FGKT+ H QV E+ + +PQ V DK K++ C +CK+ CY + V +
Sbjct: 777 FGKTV--HRIQVNEKLLRDSQHKPQPVPDKENKKLL-CGKCKNFA---CYTADIRVVETS 830
Query: 73 HF 74
H+
Sbjct: 831 HY 832
>sp|B4U3F9|UVRC_STREM UvrABC system protein C OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uvrC PE=3 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 22 RQVKEEQNQRGSDQPQAV----VDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQ+K+ P A V K D+I P +CK+ K C++ + Q C
Sbjct: 116 RQIKKNDGLYFGPYPDAYTATEVKKLLDRIFPFKKCKNPVNKVCFYYHLGQCQAHTICHT 175
Query: 78 CQRYWTA 84
+ YW +
Sbjct: 176 DKAYWDS 182
>sp|C0MDW7|UVRC_STRS7 UvrABC system protein C OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=uvrC PE=3 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 22 RQVKEEQNQRGSDQPQAV----VDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQ+K+ P A V K D+I P +CK+ K C++ + Q C
Sbjct: 116 RQIKKNDGLYFGPYPDAYTATEVKKLLDRIFPFKKCKNPVNKVCFYYHLGQCQAHTICHT 175
Query: 78 CQRYWTA 84
+ YW +
Sbjct: 176 DKAYWDS 182
>sp|C0M890|UVRC_STRE4 UvrABC system protein C OS=Streptococcus equi subsp. equi (strain
4047) GN=uvrC PE=3 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 22 RQVKEEQNQRGSDQPQAV----VDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQ+K+ P A V K D+I P +CK+ K C++ + Q C
Sbjct: 116 RQIKKNDGLYFGPYPDAYTATEVKKLLDRIFPFKKCKNPVNKVCFYYHLGQCQAHTICHT 175
Query: 78 CQRYWTA 84
+ YW +
Sbjct: 176 DKAYWDS 182
>sp|Q5M3R7|UVRC_STRT2 UvrABC system protein C OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=uvrC PE=3 SV=1
Length = 595
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 22 RQVKEEQNQRGSDQPQA----VVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQVK++ P A + K D+I P +CK+ K C++ + + C
Sbjct: 116 RQVKKDGGLYFGPYPDAGAANEIKKLLDRIFPFKKCKNPANKVCFYYHIGQCKAHTICHT 175
Query: 78 CQRYW 82
+ YW
Sbjct: 176 TEAYW 180
>sp|Q5LZ62|UVRC_STRT1 UvrABC system protein C OS=Streptococcus thermophilus (strain CNRZ
1066) GN=uvrC PE=3 SV=1
Length = 595
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 22 RQVKEEQNQRGSDQPQA----VVDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQVK++ P A + K D+I P +CK+ K C++ + + C
Sbjct: 116 RQVKKDGGLYFGPYPDAGAANEIKKLLDRIFPFKKCKNPANKVCFYYHIGQCKAHTICHT 175
Query: 78 CQRYW 82
+ YW
Sbjct: 176 TEAYW 180
>sp|P33796|RP30_VAR67 DNA-directed RNA polymerase 30 kDa polypeptide OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO30 PE=3 SV=1
Length = 259
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 49 PCPRCKSMETKFCYFNNYNVNQP---RHFCKGCQRYWTAGG--ALRNVPVGA-GRRKTKP 102
PCP CKS T ++P RH C+ C++++ A RN+ V K K
Sbjct: 158 PCPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFKPPKFRAFRNLNVTTQSIHKNKE 217
Query: 103 PGRGLPDG 110
LPD
Sbjct: 218 ITEILPDN 225
>sp|B9DUK9|UVRC_STRU0 UvrABC system protein C OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=uvrC PE=3 SV=1
Length = 591
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 22 RQVKEEQNQRGSDQPQAV----VDKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKG 77
RQ+K++ P + V K D+I P +CK+ K C++ + C+
Sbjct: 116 RQIKKQDGLYFGPYPDSYTANEVKKLLDRIFPFKKCKNPINKVCFYYHLGQCNAHSICQT 175
Query: 78 CQRYW 82
+ YW
Sbjct: 176 DKAYW 180
>sp|Q3TTP0|SHP1L_MOUSE SHC SH2 domain-binding protein 1-like protein OS=Mus musculus
GN=Shcbp1l PE=2 SV=1
Length = 639
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 9 GIKLF-GKTITLHGRQVKEEQNQRGSDQPQAVVDKRPDKIIPCPRCKSMETKFCYFNN-Y 66
G++L+ G L G ++ N R SD ++ + K++P P+ K M Y NN Y
Sbjct: 518 GVELYPGSIAILEGNEIHHCNNLRTSDSSKSTLGGVNMKVLPAPKLK-MTNNHIYNNNGY 576
Query: 67 NVN--QPRHFCKGCQRYWTAGGALRNVPVGAGRRK 99
V+ QP ++++ A N +G +K
Sbjct: 577 GVSILQPS------EQFFIVAEAALNKGAASGDKK 605
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,510,260
Number of Sequences: 539616
Number of extensions: 3502187
Number of successful extensions: 6626
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6572
Number of HSP's gapped (non-prelim): 64
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)