BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047293
         (246 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LVF|A Chain A, Syntaxin 6
 pdb|1LVF|B Chain B, Syntaxin 6
          Length = 110

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 3   SAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVH-----LKKELLAGCESIEWQV 57
           S +DPF++VK E+Q ++N  Q  F +W      P             EL     SIEW +
Sbjct: 2   SMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDL 61

Query: 58  DELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99
           ++LD+ I +   +P  + +D  EL  R+ + ++ R  V  MK
Sbjct: 62  EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMK 103


>pdb|4DND|A Chain A, Crystal Structure Of Syntaxin 10 From Homo Sapiens
          Length = 130

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 3   SAQDPFYIVKEEIQDSINKLQSTFHQW-----ENSASDPGEQVHLKKELLAGCESIEWQV 57
           S +DPF++V+ E+Q ++N  +  + +W     E++A    E      EL  G  SIEW +
Sbjct: 24  SLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL 83

Query: 58  DELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104
           ++L++ IG+   +P  + +   +L++R+ +    R  V   K   +S
Sbjct: 84  EDLEETIGIVEANPGKFKLPAGDLQERKVFVERXREAVQEXKDHXVS 130


>pdb|2QVK|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
           Is Essential For Regulation: Crystal Structures And
           Mutational Analysis
 pdb|2QVM|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
           Is Essential For Regulation: Crystal Structures And
           Mutational Analysis
          Length = 192

 Score = 31.2 bits (69), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 50  CESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRW---TSTARTQVSSMKKAVLSGG 106
           C  +E+Q DE+ K I V         IDD E EK + +       R    S KKA+L   
Sbjct: 60  CGELEFQNDEIVKTISVKV-------IDDEEYEKNKTFFLEIGEPRLVEMSEKKALL--- 109

Query: 107 ANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDE 166
            N +G  + +G  + L   P   +  + ++          +   D+Q L  K+++E    
Sbjct: 110 LNELGGFTITG--KYLYGQPVFRKVHAREHPIPSTVITIAEEYDDKQPLTSKEEEE---- 163

Query: 167 LSASVQRIGGVGLTIHDELVAQENIIDE 194
                +RI  +G  I  E    E II+E
Sbjct: 164 -----RRIAEMGRPILGEHTKLEVIIEE 186


>pdb|2NPS|D Chain D, Crystal Structure Of The Early Endosomal Snare Complex
          Length = 82

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 14/59 (23%)

Query: 158 KQQDEELDELSASV-------QRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFV 209
           + QDE+L+ +S S+       QRIGG       EL  Q  ++++   E++ST +RLD V
Sbjct: 15  RMQDEQLELVSGSIGVLKNMSQRIGG-------ELEEQAVMLEDFSHELESTQSRLDNV 66


>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex
          Length = 65

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRL 206
           +++QD  LD LS+ + R   +G  I +EL  Q  IID+L   +++T  +L
Sbjct: 4   MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 53


>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
 pdb|1V8G|B Chain B, Crystal Structure Of Anthranilate
           Phosphoribosyltransferase (Trpd) From Thermus
           Thermophilus Hb8
 pdb|2ELC|A Chain A, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|B Chain B, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|C Chain C, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
 pdb|2ELC|D Chain D, Crystal Structure Of Ttha1842 From Thermus Thermophilus
           Hb8
          Length = 329

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 164 LDELSASVQRIGGVGLTIH----DELVAQENIIDELG 196
           L  ++ +++R+G  GL +H    DELV  EN + E+G
Sbjct: 198 LAPMAEALERLGARGLVVHGEGADELVLGENRVVEVG 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,871,716
Number of Sequences: 62578
Number of extensions: 217811
Number of successful extensions: 442
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 10
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)