Query 047293
Match_columns 246
No_of_seqs 145 out of 1167
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 100.0 2.6E-38 5.6E-43 262.9 27.7 231 1-245 1-234 (235)
2 KOG0809 SNARE protein TLG2/Syn 99.8 2.2E-18 4.7E-23 145.4 20.7 231 8-246 59-302 (305)
3 KOG0810 SNARE protein Syntaxin 99.8 4.1E-18 8.9E-23 147.3 20.8 216 5-226 35-270 (297)
4 PF09177 Syntaxin-6_N: Syntaxi 99.8 4.2E-18 9E-23 125.0 9.6 94 6-99 1-97 (97)
5 COG5325 t-SNARE complex subuni 99.6 2.5E-13 5.4E-18 114.1 24.1 209 8-226 36-259 (283)
6 KOG0812 SNARE protein SED5/Syn 99.6 9.3E-14 2E-18 116.9 20.9 234 7-246 42-311 (311)
7 KOG3385 V-SNARE [Intracellular 99.6 1.5E-15 3.3E-20 111.1 8.7 85 156-240 30-114 (118)
8 KOG0811 SNARE protein PEP12/VA 99.6 4.8E-13 1E-17 114.1 23.5 227 6-240 17-258 (269)
9 PF05739 SNARE: SNARE domain; 99.5 4.1E-13 9E-18 90.5 9.6 62 159-220 1-62 (63)
10 COG5074 t-SNARE complex subuni 99.5 1.8E-11 3.9E-16 100.3 19.4 228 11-244 26-269 (280)
11 cd00193 t_SNARE Soluble NSF (N 99.2 5.9E-11 1.3E-15 78.8 7.7 59 158-216 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.2 2E-10 4.2E-15 77.7 9.1 64 153-216 3-66 (66)
13 PF09753 Use1: Membrane fusion 98.9 4E-07 8.6E-12 78.1 20.9 66 157-222 162-227 (251)
14 KOG3065 SNAP-25 (synaptosome-a 98.7 4.3E-08 9.3E-13 84.1 7.6 62 156-217 212-273 (273)
15 KOG1666 V-SNARE [Intracellular 98.7 3.3E-05 7.1E-10 63.2 23.1 189 1-224 1-197 (220)
16 KOG3251 Golgi SNAP receptor co 98.1 0.0023 4.9E-08 52.7 20.0 202 10-237 3-205 (213)
17 KOG3208 SNARE protein GS28 [In 98.0 0.005 1.1E-07 50.8 21.8 191 2-219 1-206 (231)
18 KOG3894 SNARE protein Syntaxin 97.5 0.0027 5.9E-08 55.1 12.8 85 157-241 227-311 (316)
19 KOG2678 Predicted membrane pro 97.4 0.0023 4.9E-08 52.8 10.8 57 164-220 157-213 (244)
20 PF00804 Syntaxin: Syntaxin; 97.3 0.0034 7.4E-08 45.5 9.9 90 6-99 3-103 (103)
21 PF00957 Synaptobrevin: Synapt 97.3 0.0054 1.2E-07 43.9 10.3 56 162-217 3-61 (89)
22 PF03908 Sec20: Sec20; InterP 97.1 0.014 3E-07 42.1 11.2 79 163-241 9-87 (92)
23 KOG0860 Synaptobrevin/VAMP-lik 97.1 0.016 3.5E-07 43.2 10.9 30 189-218 56-88 (116)
24 smart00503 SynN Syntaxin N-ter 96.8 0.028 6.1E-07 41.8 11.1 98 4-107 2-110 (117)
25 KOG0810 SNARE protein Syntaxin 96.4 0.04 8.6E-07 48.3 10.2 80 161-244 212-291 (297)
26 cd00179 SynN Syntaxin N-termin 96.4 0.14 3.1E-06 39.9 12.6 99 6-109 2-111 (151)
27 PF12352 V-SNARE_C: Snare regi 96.2 0.13 2.8E-06 34.4 9.9 59 161-219 7-65 (66)
28 COG5074 t-SNARE complex subuni 95.9 0.17 3.8E-06 42.3 11.2 76 156-239 193-268 (280)
29 KOG0811 SNARE protein PEP12/VA 95.3 0.53 1.1E-05 40.7 12.6 89 153-244 178-266 (269)
30 PF09753 Use1: Membrane fusion 95.3 0.31 6.6E-06 41.8 11.1 83 156-241 157-243 (251)
31 COG5325 t-SNARE complex subuni 95.2 0.58 1.3E-05 40.2 12.3 84 155-242 195-278 (283)
32 PF10779 XhlA: Haemolysin XhlA 93.8 0.97 2.1E-05 30.8 8.7 41 180-220 10-50 (71)
33 PF01519 DUF16: Protein of unk 90.5 2.7 6E-05 30.7 7.9 50 159-208 50-99 (102)
34 KOG3202 SNARE protein TLG1/Syn 90.1 6.8 0.00015 33.2 11.3 81 157-241 154-234 (235)
35 PF03904 DUF334: Domain of unk 89.5 12 0.00025 31.5 12.7 42 204-245 127-168 (230)
36 PF05478 Prominin: Prominin; 88.6 29 0.00062 34.9 22.0 12 175-186 363-374 (806)
37 PF10779 XhlA: Haemolysin XhlA 88.2 6.2 0.00014 26.8 8.5 49 180-228 3-54 (71)
38 PF07889 DUF1664: Protein of u 87.2 7.5 0.00016 29.7 8.8 58 161-218 67-124 (126)
39 PF04210 MtrG: Tetrahydrometha 85.2 9.3 0.0002 25.8 7.6 20 187-206 16-35 (70)
40 PRK11637 AmiB activator; Provi 83.9 36 0.00077 31.4 21.4 40 162-201 191-230 (428)
41 TIGR01149 mtrG N5-methyltetrah 83.7 11 0.00024 25.5 7.7 22 185-206 14-35 (70)
42 KOG0812 SNARE protein SED5/Syn 83.0 22 0.00048 31.0 10.6 60 156-215 228-287 (311)
43 PF05478 Prominin: Prominin; 82.3 59 0.0013 32.8 15.4 60 8-67 204-272 (806)
44 PF15188 CCDC-167: Coiled-coil 82.0 14 0.00029 26.2 7.5 28 194-221 40-67 (85)
45 PRK01026 tetrahydromethanopter 81.9 11 0.00023 26.1 6.8 29 186-214 18-47 (77)
46 PF04210 MtrG: Tetrahydrometha 81.9 10 0.00022 25.6 6.5 46 193-238 15-60 (70)
47 PF10146 zf-C4H2: Zinc finger- 81.9 31 0.00066 29.2 11.2 89 7-101 12-103 (230)
48 PRK01026 tetrahydromethanopter 81.4 15 0.00033 25.4 8.4 32 193-224 18-49 (77)
49 PF05008 V-SNARE: Vesicle tran 81.1 15 0.00032 25.1 11.2 58 37-103 21-78 (79)
50 PF11166 DUF2951: Protein of u 81.0 18 0.00039 26.0 10.7 69 159-228 8-77 (98)
51 PF04102 SlyX: SlyX; InterPro 80.1 14 0.00031 24.9 7.0 50 161-210 3-52 (69)
52 KOG2678 Predicted membrane pro 79.6 36 0.00078 28.6 11.6 71 157-230 146-220 (244)
53 COG3352 FlaC Putative archaeal 79.5 28 0.00061 27.3 9.5 63 39-104 70-133 (157)
54 TIGR01149 mtrG N5-methyltetrah 79.1 16 0.00034 24.7 6.7 40 194-233 16-55 (70)
55 PHA03240 envelope glycoprotein 79.0 1.8 4E-05 35.9 2.7 19 224-242 213-231 (258)
56 COG4064 MtrG Tetrahydromethano 78.4 18 0.00039 24.5 7.9 23 184-206 16-38 (75)
57 KOG0860 Synaptobrevin/VAMP-lik 76.8 29 0.00063 26.0 10.0 54 161-218 39-92 (116)
58 PF06143 Baculo_11_kDa: Baculo 75.7 3.7 8.1E-05 29.0 3.1 12 211-222 20-31 (84)
59 PRK02119 hypothetical protein; 74.8 24 0.00052 24.1 7.8 51 158-208 5-55 (73)
60 PF09889 DUF2116: Uncharacteri 74.7 5.4 0.00012 26.2 3.5 20 225-244 39-58 (59)
61 PF06143 Baculo_11_kDa: Baculo 74.5 4.2 9.1E-05 28.7 3.1 16 200-215 20-35 (84)
62 PF10717 ODV-E18: Occlusion-de 74.0 4.3 9.4E-05 28.4 3.1 10 235-244 35-44 (85)
63 KOG0809 SNARE protein TLG2/Syn 73.6 63 0.0014 28.3 18.1 219 11-243 69-302 (305)
64 PRK00846 hypothetical protein; 72.3 30 0.00064 24.0 8.0 49 161-209 12-60 (77)
65 KOG0994 Extracellular matrix g 71.9 26 0.00057 36.4 9.0 75 7-84 1198-1272(1758)
66 PRK00736 hypothetical protein; 71.1 29 0.00062 23.4 7.5 47 162-208 5-51 (68)
67 KOG3208 SNARE protein GS28 [In 70.8 62 0.0013 27.1 18.7 59 44-102 8-67 (231)
68 PF13956 Ibs_toxin: Toxin Ibs, 69.9 2.2 4.9E-05 20.9 0.6 11 234-244 6-16 (19)
69 PRK04406 hypothetical protein; 69.8 33 0.00072 23.6 8.2 50 159-208 8-57 (75)
70 PRK04325 hypothetical protein; 69.2 34 0.00073 23.4 7.9 47 162-208 9-55 (74)
71 PF00523 Fusion_gly: Fusion gl 69.1 3.1 6.8E-05 39.1 2.0 28 192-219 440-467 (490)
72 PF05531 NPV_P10: Nucleopolyhe 69.1 35 0.00076 23.6 6.7 59 45-103 8-66 (75)
73 COG0497 RecN ATPase involved i 69.0 1.1E+02 0.0024 29.4 17.3 200 9-218 145-356 (557)
74 PF11657 Activator-TraM: Trans 68.8 54 0.0012 25.6 13.3 26 142-167 33-58 (144)
75 PF08372 PRT_C: Plant phosphor 68.3 39 0.00084 26.8 7.7 18 165-182 55-72 (156)
76 PRK00295 hypothetical protein; 68.1 34 0.00074 23.0 7.6 47 162-208 5-51 (68)
77 COG3883 Uncharacterized protei 67.8 81 0.0018 27.3 13.5 49 162-210 169-217 (265)
78 PF05531 NPV_P10: Nucleopolyhe 66.7 38 0.00083 23.4 6.4 53 154-206 10-65 (75)
79 COG5570 Uncharacterized small 66.1 28 0.0006 22.2 5.1 52 46-100 3-54 (57)
80 COG4537 ComGC Competence prote 65.3 10 0.00022 27.7 3.5 24 211-234 2-26 (107)
81 PF10717 ODV-E18: Occlusion-de 65.1 7.1 0.00015 27.4 2.6 16 226-241 29-44 (85)
82 PRK02793 phi X174 lysis protei 65.0 41 0.0009 22.9 7.5 48 161-208 7-54 (72)
83 PF09680 Tiny_TM_bacill: Prote 64.6 7 0.00015 20.7 1.9 8 227-234 7-14 (24)
84 KOG0859 Synaptobrevin/VAMP-lik 64.3 26 0.00056 28.9 6.1 18 227-244 191-208 (217)
85 PF13800 Sigma_reg_N: Sigma fa 64.0 6.3 0.00014 28.3 2.4 7 215-221 3-9 (96)
86 PF00957 Synaptobrevin: Synapt 63.7 48 0.001 23.2 11.0 41 167-208 19-59 (89)
87 PF05399 EVI2A: Ectropic viral 63.3 9.6 0.00021 31.6 3.5 18 217-234 120-137 (227)
88 KOG4677 Golgi integral membran 63.3 19 0.0004 33.4 5.6 56 191-246 493-550 (554)
89 PF09889 DUF2116: Uncharacteri 63.2 10 0.00022 25.0 2.9 20 227-246 38-57 (59)
90 KOG3647 Predicted coiled-coil 61.3 1.1E+02 0.0024 26.6 10.9 95 3-100 43-161 (338)
91 PHA02844 putative transmembran 60.1 5 0.00011 27.4 1.1 8 227-234 47-54 (75)
92 PF10168 Nup88: Nuclear pore c 59.5 1.9E+02 0.0042 28.8 15.7 29 75-104 629-657 (717)
93 PF13314 DUF4083: Domain of un 59.1 14 0.00031 24.0 3.0 15 227-241 9-23 (58)
94 COG4068 Uncharacterized protei 59.1 10 0.00022 24.7 2.4 19 225-243 42-60 (64)
95 TIGR01732 tiny_TM_bacill conse 58.9 11 0.00025 20.3 2.1 6 227-232 9-14 (26)
96 PF10498 IFT57: Intra-flagella 58.9 1.4E+02 0.0031 27.0 15.6 58 162-219 287-346 (359)
97 PF00523 Fusion_gly: Fusion gl 58.2 11 0.00024 35.5 3.5 21 195-215 436-456 (490)
98 PF08113 CoxIIa: Cytochrome c 58.1 17 0.00036 20.9 2.8 22 223-244 6-27 (34)
99 PF05546 She9_MDM33: She9 / Md 58.0 1.1E+02 0.0024 25.5 13.9 25 217-241 147-171 (207)
100 PRK10884 SH3 domain-containing 57.2 1.1E+02 0.0024 25.3 11.7 41 175-215 117-157 (206)
101 PRK10132 hypothetical protein; 56.7 79 0.0017 23.4 8.4 57 1-59 1-63 (108)
102 PF00429 TLV_coat: ENV polypro 56.7 76 0.0017 30.6 8.9 39 153-192 426-464 (561)
103 COG1256 FlgK Flagellar hook-as 56.5 1.9E+02 0.0042 27.8 12.2 74 25-105 116-189 (552)
104 PF13314 DUF4083: Domain of un 56.3 18 0.00038 23.6 3.1 19 227-245 6-24 (58)
105 PF10234 Cluap1: Clusterin-ass 56.2 60 0.0013 28.1 7.3 61 36-99 157-217 (267)
106 KOG3065 SNAP-25 (synaptosome-a 55.9 1.4E+02 0.003 26.0 9.8 51 171-221 88-138 (273)
107 PHA02650 hypothetical protein; 55.3 13 0.00027 25.9 2.4 20 224-243 45-64 (81)
108 PF09125 COX2-transmemb: Cytoc 55.3 34 0.00074 20.1 3.9 16 227-242 16-31 (38)
109 PF10831 DUF2556: Protein of u 55.0 11 0.00024 23.4 1.9 14 223-236 3-16 (53)
110 PF00846 Hanta_nucleocap: Hant 53.1 75 0.0016 29.0 7.6 63 40-104 5-67 (428)
111 PF14715 FixP_N: N-terminal do 52.9 30 0.00066 21.9 3.8 26 220-245 17-42 (51)
112 PHA02819 hypothetical protein; 52.5 15 0.00032 24.9 2.4 11 226-236 44-54 (71)
113 cd00179 SynN Syntaxin N-termin 52.0 1E+02 0.0023 23.4 8.2 58 160-217 11-68 (151)
114 PRK11637 AmiB activator; Provi 50.9 2E+02 0.0044 26.4 20.5 55 156-210 199-253 (428)
115 PF03670 UPF0184: Uncharacteri 50.8 55 0.0012 23.1 5.1 21 157-177 28-48 (83)
116 PF05393 Hum_adeno_E3A: Human 50.5 21 0.00045 25.4 3.0 17 224-240 34-50 (94)
117 PF11395 DUF2873: Protein of u 50.5 29 0.00064 20.4 3.1 11 232-242 18-28 (43)
118 PF02646 RmuC: RmuC family; I 49.9 1.8E+02 0.0039 25.5 9.7 68 156-227 7-74 (304)
119 PF01601 Corona_S2: Coronaviru 49.8 6.5 0.00014 37.6 0.5 64 7-70 256-320 (610)
120 KOG0862 Synaptobrevin/VAMP-lik 49.5 1.6E+02 0.0034 24.7 8.5 17 185-201 157-173 (216)
121 PF13747 DUF4164: Domain of un 49.4 70 0.0015 22.7 5.7 57 5-68 3-59 (89)
122 PRK04778 septation ring format 48.9 2.5E+02 0.0055 27.0 19.7 46 41-89 310-355 (569)
123 PF13124 DUF3963: Protein of u 48.3 20 0.00044 20.9 2.2 14 227-240 25-38 (40)
124 PF03908 Sec20: Sec20; InterP 48.3 96 0.0021 21.9 10.2 24 173-196 9-32 (92)
125 PF07798 DUF1640: Protein of u 47.9 1.4E+02 0.0031 23.8 18.2 23 181-203 118-140 (177)
126 PHA02849 putative transmembran 47.5 28 0.00061 24.1 3.2 23 223-245 14-36 (82)
127 PF05781 MRVI1: MRVI1 protein; 47.5 46 0.001 31.7 5.6 24 44-67 251-274 (538)
128 PF07106 TBPIP: Tat binding pr 47.3 1.4E+02 0.003 23.6 11.0 37 45-83 113-149 (169)
129 PF01519 DUF16: Protein of unk 47.2 1.1E+02 0.0024 22.4 7.2 49 161-209 36-86 (102)
130 PRK00523 hypothetical protein; 46.9 28 0.00061 23.8 3.1 20 226-245 5-24 (72)
131 TIGR02132 phaR_Bmeg polyhydrox 45.6 1.6E+02 0.0036 23.8 9.1 56 163-218 80-135 (189)
132 PRK09039 hypothetical protein; 45.4 2.3E+02 0.0049 25.4 16.2 68 151-218 126-194 (343)
133 PF13179 DUF4006: Family of un 45.0 21 0.00046 23.9 2.2 14 230-243 21-34 (66)
134 PF11239 DUF3040: Protein of u 44.2 44 0.00095 23.2 3.9 23 190-212 9-31 (82)
135 PRK01844 hypothetical protein; 43.9 34 0.00073 23.4 3.1 19 226-244 4-22 (72)
136 PF10661 EssA: WXG100 protein 43.5 28 0.00061 27.2 3.1 18 227-244 119-136 (145)
137 PRK13895 conjugal transfer pro 42.8 1.6E+02 0.0035 22.9 13.1 28 142-169 33-60 (144)
138 TIGR01834 PHA_synth_III_E poly 42.6 2.1E+02 0.0045 25.5 8.7 19 7-25 253-271 (320)
139 PF15106 TMEM156: TMEM156 prot 42.2 29 0.00063 28.8 3.1 8 237-244 187-194 (226)
140 KOG3894 SNARE protein Syntaxin 42.1 1.1E+02 0.0024 27.1 6.8 87 159-245 219-311 (316)
141 PF08650 DASH_Dad4: DASH compl 42.1 93 0.002 21.3 5.1 35 187-221 8-42 (72)
142 smart00806 AIP3 Actin interact 41.9 2.2E+02 0.0048 26.4 9.0 91 6-103 220-320 (426)
143 PF03915 AIP3: Actin interacti 41.8 2.9E+02 0.0063 25.7 12.4 64 40-103 205-270 (424)
144 PHA03386 P10 fibrous body prot 41.7 1.1E+02 0.0023 22.0 5.5 49 154-206 11-59 (94)
145 KOG0996 Structural maintenance 41.3 4.6E+02 0.01 27.8 19.0 61 156-217 971-1032(1293)
146 COG5416 Uncharacterized integr 41.3 27 0.00059 25.3 2.5 11 221-231 19-29 (98)
147 PF10498 IFT57: Intra-flagella 41.3 2.7E+02 0.006 25.2 10.0 18 3-20 189-208 (359)
148 PRK10299 PhoPQ regulatory prot 41.1 38 0.00083 21.0 2.8 18 226-243 6-23 (47)
149 PF06825 HSBP1: Heat shock fac 40.7 99 0.0021 19.9 5.5 30 39-68 19-48 (54)
150 PRK04654 sec-independent trans 40.4 2.2E+02 0.0047 23.8 8.7 20 195-214 73-92 (214)
151 TIGR00606 rad50 rad50. This fa 40.2 5E+02 0.011 27.9 18.3 57 162-218 984-1042(1311)
152 PF14362 DUF4407: Domain of un 40.1 2.5E+02 0.0054 24.4 16.3 23 81-103 137-159 (301)
153 PRK09973 putative outer membra 40.0 1.3E+02 0.0029 21.2 6.8 32 164-195 40-71 (85)
154 PF13908 Shisa: Wnt and FGF in 39.1 16 0.00034 29.4 1.2 8 235-242 89-96 (179)
155 COG5185 HEC1 Protein involved 39.0 3.4E+02 0.0075 25.7 17.0 61 43-103 297-361 (622)
156 PF09851 SHOCT: Short C-termin 38.5 73 0.0016 17.7 3.8 27 55-88 3-29 (31)
157 PF06419 COG6: Conserved oligo 38.1 1.1E+02 0.0024 29.8 7.0 79 7-85 35-117 (618)
158 COG4064 MtrG Tetrahydromethano 37.4 1.3E+02 0.0028 20.4 7.1 31 193-223 18-48 (75)
159 PF04728 LPP: Lipoprotein leuc 37.3 1.2E+02 0.0025 19.7 7.9 48 163-217 4-51 (56)
160 PF11027 DUF2615: Protein of u 37.3 1.1E+02 0.0023 22.6 5.1 14 207-220 15-28 (103)
161 PF04678 DUF607: Protein of un 37.2 2.2E+02 0.0048 22.9 8.7 39 206-244 76-114 (180)
162 PHA03395 p10 fibrous body prot 37.2 1.5E+02 0.0033 21.0 5.7 50 154-203 10-62 (87)
163 PF13121 DUF3976: Domain of un 37.2 25 0.00055 20.5 1.5 20 224-243 19-38 (41)
164 PF07432 Hc1: Histone H1-like 36.9 1.8E+02 0.0039 21.8 6.3 44 168-218 3-46 (123)
165 PF06422 PDR_CDR: CDR ABC tran 36.9 43 0.00094 24.4 3.1 11 227-237 52-62 (103)
166 PHA03386 P10 fibrous body prot 36.6 1.6E+02 0.0035 21.2 6.2 53 45-104 9-61 (94)
167 PF09548 Spore_III_AB: Stage I 36.2 1.6E+02 0.0034 23.4 6.5 27 78-104 20-46 (170)
168 TIGR01730 RND_mfp RND family e 36.0 2.7E+02 0.0059 23.8 8.6 30 74-103 97-126 (322)
169 cd01324 cbb3_Oxidase_CcoQ Cyto 35.9 52 0.0011 20.5 2.9 18 227-244 14-31 (48)
170 PF13747 DUF4164: Domain of un 35.9 1.6E+02 0.0034 20.9 8.1 53 165-217 35-87 (89)
171 PF05008 V-SNARE: Vesicle tran 35.8 1.4E+02 0.003 20.1 7.8 58 6-65 21-78 (79)
172 COG2882 FliJ Flagellar biosynt 35.7 2.2E+02 0.0047 22.4 8.2 60 44-103 26-88 (148)
173 PF06789 UPF0258: Uncharacteri 35.6 6.2 0.00013 31.0 -1.6 7 227-233 137-143 (159)
174 PHA03054 IMV membrane protein; 35.4 61 0.0013 22.0 3.3 20 223-242 43-62 (72)
175 PF12877 DUF3827: Domain of un 35.3 16 0.00034 35.4 0.7 24 222-245 266-289 (684)
176 KOG0964 Structural maintenance 35.3 5.4E+02 0.012 26.8 16.5 18 8-25 228-245 (1200)
177 PHA02675 ORF104 fusion protein 35.2 1.6E+02 0.0035 20.7 7.2 44 169-212 37-80 (90)
178 PF15450 DUF4631: Domain of un 35.1 4.1E+02 0.0089 25.4 11.9 62 40-103 411-472 (531)
179 PF10267 Tmemb_cc2: Predicted 34.7 3.7E+02 0.008 24.8 16.7 59 152-210 259-318 (395)
180 PHA03395 p10 fibrous body prot 34.4 1.7E+02 0.0037 20.8 6.0 58 45-103 8-66 (87)
181 COG2900 SlyX Uncharacterized p 34.4 1.5E+02 0.0033 20.2 7.7 50 159-208 5-54 (72)
182 PF11057 Cortexin: Cortexin of 34.3 41 0.0009 23.1 2.4 17 225-241 30-46 (81)
183 PF02203 TarH: Tar ligand bind 34.1 2.2E+02 0.0047 21.9 8.3 85 13-105 55-140 (171)
184 PRK04406 hypothetical protein; 33.9 1.6E+02 0.0034 20.2 7.8 36 181-216 16-51 (75)
185 PF03915 AIP3: Actin interacti 33.7 3.2E+02 0.0068 25.5 8.8 87 10-103 220-316 (424)
186 PF13980 UPF0370: Uncharacteri 33.6 41 0.00088 22.0 2.1 10 225-234 7-16 (63)
187 TIGR01010 BexC_CtrB_KpsE polys 33.4 3.5E+02 0.0076 24.1 19.2 61 41-103 170-231 (362)
188 PF13150 DUF3989: Protein of u 32.9 1.2E+02 0.0025 21.5 4.6 32 208-239 10-41 (85)
189 COG3736 VirB8 Type IV secretor 32.9 55 0.0012 27.9 3.5 28 213-243 33-60 (239)
190 PF12495 Vip3A_N: Vegetative i 32.8 2.2E+02 0.0048 21.6 6.8 63 153-215 43-112 (177)
191 PF09738 DUF2051: Double stran 32.7 3.5E+02 0.0076 23.9 9.1 87 11-103 78-164 (302)
192 PF06160 EzrA: Septation ring 32.3 4.7E+02 0.01 25.2 19.5 62 39-103 304-368 (560)
193 TIGR00634 recN DNA repair prot 31.9 4.7E+02 0.01 25.1 17.4 58 162-219 301-361 (563)
194 PRK11875 psbT photosystem II r 31.9 79 0.0017 17.8 2.8 16 229-244 7-22 (31)
195 PF01405 PsbT: Photosystem II 31.8 98 0.0021 17.2 3.2 16 229-244 7-22 (29)
196 PHA02047 phage lambda Rz1-like 31.6 2E+02 0.0044 20.8 7.1 45 180-224 38-82 (101)
197 PF05545 FixQ: Cbb3-type cytoc 31.6 73 0.0016 19.7 3.1 16 229-244 15-30 (49)
198 smart00503 SynN Syntaxin N-ter 31.6 2E+02 0.0043 20.7 8.2 59 158-216 11-69 (117)
199 PF05791 Bacillus_HBL: Bacillu 31.6 2.8E+02 0.006 22.4 9.1 62 160-221 101-162 (184)
200 KOG2825 Putative arsenite-tran 31.5 87 0.0019 27.2 4.4 66 165-230 164-231 (323)
201 PF12777 MT: Microtubule-bindi 31.3 3.8E+02 0.0082 23.9 8.8 65 159-223 232-296 (344)
202 PF07106 TBPIP: Tat binding pr 30.8 2.7E+02 0.0058 21.9 8.9 55 42-104 80-134 (169)
203 TIGR02492 flgK_ends flagellar 30.3 3.8E+02 0.0083 23.6 11.9 54 45-104 131-184 (322)
204 smart00502 BBC B-Box C-termina 30.2 2.1E+02 0.0045 20.6 8.5 50 172-221 42-92 (127)
205 TIGR01478 STEVOR variant surfa 30.2 51 0.0011 28.8 2.8 27 53-82 78-105 (295)
206 PF11559 ADIP: Afadin- and alp 29.8 2.6E+02 0.0056 21.5 8.4 20 12-31 30-49 (151)
207 COG3763 Uncharacterized protei 29.7 79 0.0017 21.5 3.1 19 226-244 4-22 (71)
208 KOG3758 Uncharacterized conser 29.6 1.6E+02 0.0036 28.6 6.3 80 7-86 68-151 (655)
209 PF08614 ATG16: Autophagy prot 29.6 3E+02 0.0066 22.2 9.3 67 155-221 109-175 (194)
210 PRK15396 murein lipoprotein; P 29.4 2E+02 0.0043 20.0 6.9 15 202-216 58-72 (78)
211 PTZ00370 STEVOR; Provisional 29.3 54 0.0012 28.7 2.8 18 53-73 77-94 (296)
212 PF07889 DUF1664: Protein of u 29.3 2.6E+02 0.0056 21.3 10.8 55 5-65 31-85 (126)
213 PHA03049 IMV membrane protein; 29.2 79 0.0017 21.2 3.0 12 234-245 12-23 (68)
214 PHA02689 ORF051 putative membr 29.2 75 0.0016 24.1 3.3 20 223-242 28-47 (128)
215 PF14745 WASH-7_N: WASH comple 29.2 1.9E+02 0.0042 27.8 6.9 50 44-93 172-221 (567)
216 PF01105 EMP24_GP25L: emp24/gp 29.2 18 0.0004 28.3 0.0 22 212-233 144-165 (183)
217 TIGR00999 8a0102 Membrane Fusi 29.1 2.8E+02 0.0061 23.0 7.4 33 73-105 48-80 (265)
218 PF05957 DUF883: Bacterial pro 29.1 2.1E+02 0.0045 20.1 12.4 20 200-219 52-71 (94)
219 COG5336 Uncharacterized protei 29.1 1.3E+02 0.0028 22.4 4.4 25 214-238 63-87 (116)
220 KOG0972 Huntingtin interacting 29.0 3.7E+02 0.0081 23.7 7.8 23 81-103 303-325 (384)
221 PHA02967 hypothetical protein; 28.8 75 0.0016 24.1 3.2 20 223-242 25-44 (128)
222 COG3883 Uncharacterized protei 28.6 3.9E+02 0.0085 23.2 9.6 10 197-206 87-96 (265)
223 COG4218 MtrF Tetrahydromethano 28.5 1.9E+02 0.0042 19.6 4.9 12 227-238 54-65 (73)
224 PRK11519 tyrosine kinase; Prov 28.2 6E+02 0.013 25.2 17.3 62 40-102 266-327 (719)
225 PF05434 Tmemb_9: TMEM9; Inte 27.9 19 0.00042 28.2 -0.1 19 227-245 57-75 (149)
226 PF06363 Picorna_P3A: Picornav 27.8 2.3E+02 0.0051 20.3 6.0 25 199-223 47-71 (100)
227 PF13044 DUF3904: Protein of u 27.7 53 0.0011 28.2 2.5 18 227-244 411-428 (436)
228 TIGR02833 spore_III_AB stage I 27.7 2.6E+02 0.0056 22.3 6.4 27 78-104 20-46 (170)
229 PRK08307 stage III sporulation 27.6 2.6E+02 0.0056 22.3 6.5 27 78-104 21-47 (171)
230 PF05055 DUF677: Protein of un 27.1 1.9E+02 0.0041 26.0 6.0 20 187-206 154-173 (336)
231 PF15290 Syntaphilin: Golgi-lo 26.9 4.3E+02 0.0094 23.1 8.4 40 44-88 113-152 (305)
232 PF10999 DUF2839: Protein of u 26.8 88 0.0019 21.2 3.0 21 222-242 41-61 (68)
233 PF06193 Orthopox_A5L: Orthopo 26.7 3.3E+02 0.0073 21.8 8.1 56 164-219 106-161 (166)
234 CHL00031 psbT photosystem II p 26.7 86 0.0019 17.9 2.4 16 229-244 7-22 (33)
235 KOG1666 V-SNARE [Intracellular 26.3 3.9E+02 0.0084 22.4 19.5 54 9-68 35-92 (220)
236 MTH00261 ATP8 ATP synthase F0 26.2 1.1E+02 0.0023 19.8 3.1 18 228-245 15-32 (68)
237 PF07097 DUF1359: Protein of u 26.1 2.4E+02 0.0052 20.0 5.1 38 161-198 8-45 (102)
238 PF05399 EVI2A: Ectropic viral 26.0 78 0.0017 26.4 3.1 6 229-234 137-142 (227)
239 PF00261 Tropomyosin: Tropomyo 25.9 2.7E+02 0.0058 23.4 6.6 63 157-219 10-72 (237)
240 PF10669 Phage_Gp23: Protein g 25.9 1.7E+02 0.0036 21.3 4.4 26 151-176 85-110 (121)
241 KOG4358 Uncharacterized conser 25.7 4E+02 0.0087 25.2 7.8 56 4-59 496-561 (584)
242 PRK07739 flgK flagellar hook-a 25.6 5.8E+02 0.013 24.2 11.7 104 20-171 119-222 (507)
243 PF06072 Herpes_US9: Alphaherp 25.5 1.9E+02 0.004 19.0 4.2 12 201-212 10-21 (60)
244 PF03938 OmpH: Outer membrane 25.5 3.1E+02 0.0067 21.0 7.3 59 40-103 42-100 (158)
245 PRK05585 yajC preprotein trans 25.4 77 0.0017 23.3 2.8 17 226-242 18-34 (106)
246 PF00261 Tropomyosin: Tropomyo 25.2 4.1E+02 0.0089 22.3 8.4 57 160-216 90-146 (237)
247 PTZ00046 rifin; Provisional 25.0 3.4E+02 0.0075 24.6 7.2 7 227-233 316-322 (358)
248 KOG0995 Centromere-associated 25.0 6.4E+02 0.014 24.4 18.2 124 45-199 263-390 (581)
249 COG4640 Predicted membrane pro 24.9 84 0.0018 28.8 3.3 16 205-220 28-43 (465)
250 PRK02793 phi X174 lysis protei 24.8 2.3E+02 0.0049 19.2 6.4 17 187-203 19-35 (72)
251 COG1459 PulF Type II secretory 24.7 2.8E+02 0.0061 25.5 6.9 7 211-217 157-163 (397)
252 PF06120 Phage_HK97_TLTM: Tail 24.6 4.9E+02 0.011 23.0 8.1 24 151-174 84-107 (301)
253 PF15254 CCDC14: Coiled-coil d 24.4 6.7E+02 0.014 25.4 9.4 67 37-103 490-560 (861)
254 PF12108 SF3a60_bindingd: Spli 24.1 59 0.0013 17.9 1.4 16 2-17 3-18 (28)
255 PF06738 DUF1212: Protein of u 24.0 3E+02 0.0066 21.9 6.4 27 195-221 73-99 (193)
256 PF12325 TMF_TATA_bd: TATA ele 23.9 3.2E+02 0.0069 20.6 7.6 91 3-103 9-113 (120)
257 PF00974 Rhabdo_glycop: Rhabdo 23.9 19 0.00042 34.0 -0.8 42 203-244 431-472 (501)
258 COG2034 Predicted membrane pro 23.8 1.2E+02 0.0025 21.5 3.2 22 224-245 61-82 (85)
259 PF04568 IATP: Mitochondrial A 23.6 2.1E+02 0.0045 20.9 4.7 23 178-200 78-100 (100)
260 KOG0946 ER-Golgi vesicle-tethe 23.5 5.9E+02 0.013 25.9 8.9 73 146-218 655-727 (970)
261 PRK08307 stage III sporulation 23.3 3.9E+02 0.0084 21.3 6.9 59 174-241 111-170 (171)
262 PRK10884 SH3 domain-containing 23.3 4.3E+02 0.0094 21.9 12.8 18 45-62 122-139 (206)
263 PHA03332 membrane glycoprotein 23.1 2.9E+02 0.0062 28.9 6.8 52 14-65 895-947 (1328)
264 KOG3385 V-SNARE [Intracellular 22.9 3.3E+02 0.0072 20.4 7.9 27 215-242 86-112 (118)
265 PF07334 IFP_35_N: Interferon- 22.9 2E+02 0.0043 19.9 4.2 34 39-72 5-38 (76)
266 KOG1690 emp24/gp25L/p24 family 22.8 1.8E+02 0.0039 24.1 4.6 62 154-233 131-192 (215)
267 COG4026 Uncharacterized protei 22.8 4.7E+02 0.01 22.2 8.5 58 41-101 149-206 (290)
268 PF06009 Laminin_II: Laminin D 22.7 28 0.00061 26.8 0.0 61 156-216 46-109 (138)
269 PF03408 Foamy_virus_ENV: Foam 22.7 1.5E+02 0.0032 29.9 4.7 56 187-245 26-81 (981)
270 PF08370 PDR_assoc: Plant PDR 22.6 92 0.002 20.8 2.4 13 222-234 26-38 (65)
271 PF09577 Spore_YpjB: Sporulati 22.5 3.8E+02 0.0082 22.7 6.7 18 226-243 200-218 (232)
272 PRK06665 flgK flagellar hook-a 22.5 7.4E+02 0.016 24.3 11.7 104 20-171 119-222 (627)
273 smart00806 AIP3 Actin interact 22.2 6.4E+02 0.014 23.5 15.8 57 44-100 213-271 (426)
274 KOG0862 Synaptobrevin/VAMP-lik 22.1 4.7E+02 0.01 21.9 8.1 24 174-197 133-156 (216)
275 TIGR03007 pepcterm_ChnLen poly 22.0 6.5E+02 0.014 23.4 22.4 94 11-104 169-272 (498)
276 PHA02902 putative IMV membrane 22.0 1.3E+02 0.0028 20.1 2.9 12 231-242 11-22 (70)
277 PF12252 SidE: Dot/Icm substra 21.9 9.7E+02 0.021 25.4 10.4 56 37-99 1059-1116(1439)
278 PF01601 Corona_S2: Coronaviru 21.9 1.6E+02 0.0034 28.6 4.7 21 45-65 302-322 (610)
279 TIGR02833 spore_III_AB stage I 21.8 4.1E+02 0.009 21.1 7.1 59 174-241 110-169 (170)
280 PF09548 Spore_III_AB: Stage I 21.7 4.1E+02 0.0089 21.0 7.3 58 175-241 111-169 (170)
281 KOG2861 Uncharacterized conser 21.6 3.8E+02 0.0083 24.7 7.0 18 163-180 324-341 (399)
282 PF14257 DUF4349: Domain of un 21.6 4.4E+02 0.0096 22.3 7.2 59 10-69 132-190 (262)
283 PF02646 RmuC: RmuC family; I 21.4 5.6E+02 0.012 22.4 8.3 54 159-212 230-283 (304)
284 PRK07521 flgK flagellar hook-a 21.3 6.9E+02 0.015 23.5 12.0 104 20-171 102-205 (483)
285 PF05335 DUF745: Protein of un 21.2 4.6E+02 0.01 21.4 10.0 61 157-217 111-171 (188)
286 TIGR03495 phage_LysB phage lys 21.2 3.9E+02 0.0085 20.6 9.7 68 152-226 30-97 (135)
287 COG1340 Uncharacterized archae 20.8 5.8E+02 0.013 22.5 19.4 58 161-218 192-249 (294)
288 PF07544 Med9: RNA polymerase 20.8 3E+02 0.0065 19.1 7.0 59 35-100 22-80 (83)
289 PF01445 SH: Viral small hydro 20.7 1.4E+02 0.003 19.2 2.8 18 228-245 13-30 (57)
290 COG4238 Murein lipoprotein [Ce 20.6 3E+02 0.0065 19.0 5.2 30 190-219 39-68 (78)
291 PF13807 GNVR: G-rich domain o 20.6 2.9E+02 0.0063 18.8 7.4 21 224-244 58-78 (82)
292 PF04906 Tweety: Tweety; Inte 20.6 6.7E+02 0.015 23.0 11.6 11 227-237 188-198 (406)
293 KOG0250 DNA repair protein RAD 20.5 1E+03 0.022 25.1 20.3 62 160-221 406-467 (1074)
294 PF10241 KxDL: Uncharacterized 20.4 3.2E+02 0.0068 19.2 11.2 66 150-215 17-82 (88)
295 COG4499 Predicted membrane pro 20.4 1.6E+02 0.0034 27.0 4.2 12 190-201 185-196 (434)
296 TIGR03545 conserved hypothetic 20.4 6.6E+02 0.014 24.3 8.6 27 77-103 210-236 (555)
297 PF12718 Tropomyosin_1: Tropom 20.1 4.2E+02 0.009 20.5 10.3 80 6-102 10-89 (143)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-38 Score=262.91 Aligned_cols=231 Identities=34% Similarity=0.520 Sum_probs=190.5
Q ss_pred CCCCCCchHhHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Q 047293 1 MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASD-PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDI 79 (246)
Q Consensus 1 m~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~-~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~ 79 (246)
|++..|||+.++.++.+..+.+++.|++|.++.++ ++++.+.+..|+ ..+.+++++|+.++.+++++|++|+++..
T Consensus 1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide~ 77 (235)
T KOG3202|consen 1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDEF 77 (235)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcHH
Confidence 78999999999999999999999999999998777 778999999999 67788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCC-C-ccchhhhccCChhHhhhHHHHHHHHH
Q 047293 80 ELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQ-A-KSNQYAAAQDNDDFIQSESDRQLLLV 157 (246)
Q Consensus 80 El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~-~-~~~~~~~~~~n~~~~~~~~~~Q~~~~ 157 (246)
|+++|+.++.+++.++++++..|.+.... + ...|..+++.+..+. . .+.+.. +.|| .+...++|++++
T Consensus 78 El~~R~~~i~~lr~q~~~~~~~~~~~~~~-----~-~~~r~~l~~~~~~~~~~~~~~~~~-~~D~---v~~~~~~qqqm~ 147 (235)
T KOG3202|consen 78 ELSRRRRFIDNLRTQLRQMKSKMAMSGFA-----N-SNIRDILLGPEKSPNLDEAMSRAS-GLDN---VQEIVQLQQQML 147 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-----c-ccchhhhcCCCCCCchhhhHHHhh-ccCc---HHHHHHHHHHHH
Confidence 99999999999999999999999872211 1 122455555433221 1 222333 4443 344568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Q 047293 158 KQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFI 237 (246)
Q Consensus 158 ~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i 237 (246)
++||++|+.|+++|+++|++|..||+|+++|+.+||++++.||.+++++.++++++.++.++.++|++| |+++++++++
T Consensus 148 ~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~-~~il~l~~~~ 226 (235)
T KOG3202|consen 148 QEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQW-CAILLLVGLL 226 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987777654 4444445555
Q ss_pred HHHHHHHh
Q 047293 238 VLFVLVFL 245 (246)
Q Consensus 238 ~l~~~~~~ 245 (246)
++++++|+
T Consensus 227 ~lvv~i~~ 234 (235)
T KOG3202|consen 227 LLVVIIFI 234 (235)
T ss_pred HHHHHHhc
Confidence 55555554
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.2e-18 Score=145.37 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=173.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWEN-----SASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~-----l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
|.+..++|...+..++..+.+... +.|+-.+-..-..+|...-..+...+..+++.++.+.++++ ..++.|.-
T Consensus 59 wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n--~~~~~e~~ 136 (305)
T KOG0809|consen 59 WVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN--QLSPSERL 136 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCChHHHH
Confidence 999999999999999998877544 44543333455788888889999999999999998887653 46899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHH-HHHH-------
Q 047293 83 KRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSES-DRQL------- 154 (246)
Q Consensus 83 ~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~-~~Q~------- 154 (246)
-|.++...+-.++..+...|+..+..|- +.-..+.+ -..+... ..++.+...+..+|..... +.|.
T Consensus 137 ~~~n~~~~la~~LQ~~s~~fR~~Qs~YL---K~l~~~ee-~~~~~e~--~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~ 210 (305)
T KOG0809|consen 137 LRKNAQGYLALQLQTLSREFRGLQSKYL---KRLRNREE-NSQEYED--SLDNTVDLPDDEDFSDRTFQEQQLMLFENNE 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhchhh-cccchhh--hccccccCcchhhhhhhhHHHHHHHHHhcch
Confidence 9999999999999999999987664321 00000000 0000000 1122220112233322211 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIA 234 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~ 234 (246)
.+..++++++..|..+|..|.+++.+++..|.+|+-.+|+||++++++..+++.|.+.+.|+-.+++..++++||++|++
T Consensus 211 ~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 211 EVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHH
Confidence 12457889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhC
Q 047293 235 LFIVLFVLVFLT 246 (246)
Q Consensus 235 ~~i~l~~~~~~~ 246 (246)
++|+++++++.+
T Consensus 291 ~ii~llvllilk 302 (305)
T KOG0809|consen 291 LIIALLVLLILK 302 (305)
T ss_pred HHHHHHHHHHhh
Confidence 888888887764
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.1e-18 Score=147.31 Aligned_cols=216 Identities=14% Similarity=0.205 Sum_probs=152.1
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhcc-----CCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047293 5 QDPFYIVKEEIQDSINKLQSTFHQWENSA-----SDP------GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSW 73 (246)
Q Consensus 5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~-----~~~------~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k 73 (246)
.|.|+..+++|...+..+...+++..... .+. ..+.....++++.-+.+...|+.+++.....+.+|
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~-- 112 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN-- 112 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--
Confidence 56799999999999999999888766531 111 24566777778888888888888888777555433
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCC--ccchhhhccCChh-HhhhHH
Q 047293 74 YGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQA--KSNQYAAAQDNDD-FIQSES 150 (246)
Q Consensus 74 ~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~--~~~~~~~~~~n~~-~~~~~~ 150 (246)
-+....+.|+.....+.+++.+++..|+..+..|..-.. ..-++.++-..+..++ .++... +.++.. |.+...
T Consensus 113 --~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k-~~i~Rql~i~~~~~~~de~ie~~i-e~g~~~~f~~~~i 188 (297)
T KOG0810|consen 113 --RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYK-ERIQRQLFIVGGEETTDEEIEEMI-ESGGSEVFTQKAI 188 (297)
T ss_pred --CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCCCcCChHHHHHHH-HCCChHHHHHHHH
Confidence 233456889999999999999999999977654430000 1112444433221222 233444 333333 221111
Q ss_pred ----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccc
Q 047293 151 ----DRQLL--LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKG 224 (246)
Q Consensus 151 ----~~Q~~--~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~ 224 (246)
+.++. -++++...+..|+.+|.+|+++|.+|..+|+.|++|+|+|+.+|.+|..++..|...++++..+++..+
T Consensus 189 ~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR 268 (297)
T KOG0810|consen 189 QDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR 268 (297)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111 356788899999999999999999999999999999999999999999999999999999988776433
Q ss_pred hh
Q 047293 225 QI 226 (246)
Q Consensus 225 ~~ 226 (246)
+|
T Consensus 269 K~ 270 (297)
T KOG0810|consen 269 KW 270 (297)
T ss_pred hc
Confidence 33
No 4
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.76 E-value=4.2e-18 Score=125.02 Aligned_cols=94 Identities=36% Similarity=0.772 Sum_probs=87.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDP---GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~---~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
|||+.++++|.+++..+++.|.+|..+...+ +++.++..+|+..|+.++++|++|++++.++++||.+|+|++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 8999999999999999999999999875443 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047293 83 KRRRWTSTARTQVSSMK 99 (246)
Q Consensus 83 ~R~~~v~~l~~~~~~l~ 99 (246)
+|+.||..++.+++.|+
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999885
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.64 E-value=2.5e-13 Score=114.07 Aligned_cols=209 Identities=10% Similarity=0.155 Sum_probs=123.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCCCHHHH
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWEN-----SASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDP-SWYGIDDIEL 81 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~-----l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~-~k~~is~~El 81 (246)
|.....+|...+..++..+..+.. +.|+..+-..-.++|.+....+..+|..+.+.++....+- +.|. ..++
T Consensus 36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~~--~~kl 113 (283)
T COG5325 36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSFL--QSKL 113 (283)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 777888889999998888776543 2333344455666777777778888877777776543221 0010 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCC--------CCcc-chhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHH
Q 047293 82 EKRRRWTSTARTQVSSMKKAVLSGGANGV--------GTMS-ASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDR 152 (246)
Q Consensus 82 ~~R~~~v~~l~~~~~~l~~~~~~~~~~~~--------~~~~-~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 152 (246)
-+=-++.-.....+..-...+..-+..+. ++.+ ....++.-...++.. . ...-+++..++...
T Consensus 114 l~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~~~sq-----~---~lqq~~l~~ee~~~ 185 (283)
T COG5325 114 LRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQ-----Q---TLQQQGLSNEELEY 185 (283)
T ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhccchh-----h---HHHHhhhhhhhHHH
Confidence 00011111111111111111111100000 0000 000111100000000 0 00112223344467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchh
Q 047293 153 QLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQI 226 (246)
Q Consensus 153 Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~ 226 (246)
|+-++.++|+++..|+.+|.+|.+++.+++.-|.+|+.++|+||+++++++..++.|++.+.++-..++..++|
T Consensus 186 qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 186 QQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 88889999999999999999999999999999999999999999999999999999999999998877654444
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=9.3e-14 Score=116.93 Aligned_cols=234 Identities=16% Similarity=0.257 Sum_probs=158.1
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHh------ccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWEN------SASDPG-EQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDI 79 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~------l~~~~~-~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~ 79 (246)
.|......|-..|......+++... +.++.+ ++.+++.-|+..|..+...+.+|.+... ... +.+..
T Consensus 42 eF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~-~~g-----n~s~~ 115 (311)
T KOG0812|consen 42 EFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVK-ANG-----NLSNK 115 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHH-Hhc-----cccch
Confidence 4888888888888888777766544 334444 8999999999999999999999998773 322 22321
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCC-CCCC-------C-ccch---hhh-----ccC
Q 047293 80 E-LEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLP-NSHQ-------A-KSNQ---YAA-----AQD 141 (246)
Q Consensus 80 E-l~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~-~~~~-------~-~~~~---~~~-----~~~ 141 (246)
- ..--++.|..|.+++..+...|..-...+..+.+..+.|++.+... ++-+ + .+.+ ... ..+
T Consensus 116 ~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~ 195 (311)
T KOG0812|consen 116 QLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQD 195 (311)
T ss_pred HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccc
Confidence 1 3334667778888877777766532211100122344455555421 1100 0 0000 000 011
Q ss_pred ----ChhHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHH
Q 047293 142 ----NDDFIQSESDRQLLLVKQQDE-------ELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 142 ----n~~~~~~~~~~Q~~~~~~qD~-------~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
|.+-....++.|..+++++|+ .+..|+.+|.+|.+|+..+...|.+|++++.+||++|+.+...++.|.
T Consensus 196 ~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~ 275 (311)
T KOG0812|consen 196 VESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAH 275 (311)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence 001111223556667777765 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHhC
Q 047293 211 KKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT 246 (246)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~~~ 246 (246)
..|-|.++..++++|.++=+|.|+++|+|+|++|.+
T Consensus 276 ~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 276 SELLKYFERVSSNRWLMVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988875454477777777777777753
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-15 Score=111.12 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIAL 235 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~ 235 (246)
+..|+|+.++.|.+.|..||.++.+|++||+.||++||.+++++|++.+.|.+++.|++.+.+.++.+-+||++++++|+
T Consensus 30 le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 30 LERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVA 109 (118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999984333333344444444
Q ss_pred HHHHH
Q 047293 236 FIVLF 240 (246)
Q Consensus 236 ~i~l~ 240 (246)
+++++
T Consensus 110 ~fi~~ 114 (118)
T KOG3385|consen 110 FFILW 114 (118)
T ss_pred HHHhh
Confidence 44333
No 8
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.8e-13 Score=114.07 Aligned_cols=227 Identities=13% Similarity=0.132 Sum_probs=146.9
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWEN---SASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~---l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
.+|.....++...+..+........+ ..-++.+..++...+...-......++++...++-+...+. +.+.+
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-----~~~~~ 91 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-----ESDLR 91 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhHHH
Confidence 46888999999999988876444433 11112233445555666666666677777777776654432 56678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCC-----ccchhh-hc-cCChh----Hh-hhHH
Q 047293 83 KRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQA-----KSNQYA-AA-QDNDD----FI-QSES 150 (246)
Q Consensus 83 ~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~-----~~~~~~-~~-~~n~~----~~-~~~~ 150 (246)
..+.....|..++....+.|...+...+.... ...+.. +....... ...... .+ ..... +. .+..
T Consensus 92 ~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~~a~--~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~ 168 (269)
T KOG0811|consen 92 QLKIQLDKLVDEFSAALKEFQKVQRKSAEREK-IPMVAR--GSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEIL 168 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cccccc--ccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhh
Confidence 88888889999988888888765543221110 000000 00000000 000000 00 00000 00 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMIL 230 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~ 230 (246)
..|..+++++++.+..|+..|..+++|+.+++..|.+|++++|.|+++|++|...++.|+..|.++.+++....+|.||+
T Consensus 169 ~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~l 248 (269)
T KOG0811|consen 169 EYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCIL 248 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 34667889999999999999999999999999999999999999999999999999999999999999887666666665
Q ss_pred HHHHHHHHHH
Q 047293 231 FLIALFIVLF 240 (246)
Q Consensus 231 ~li~~~i~l~ 240 (246)
++|+++++|+
T Consensus 249 l~v~~~v~li 258 (269)
T KOG0811|consen 249 LLVGGPVGLI 258 (269)
T ss_pred hHHHHHHHHH
Confidence 5554444333
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.48 E-value=4.1e-13 Score=90.55 Aligned_cols=62 Identities=29% Similarity=0.429 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
++|+.|+.|+.+|.+|+++|.+|+.||++|+++||+|+++|+.|..+|.++++++.++.+++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999875
No 10
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.46 E-value=1.8e-11 Score=100.33 Aligned_cols=228 Identities=12% Similarity=0.190 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH
Q 047293 11 VKEEIQDSINKLQSTFHQWENSASD--PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWT 88 (246)
Q Consensus 11 ~~~ev~~~l~~l~~~~~~~~~l~~~--~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v 88 (246)
.+..+.+.+..+...+.+-..+..+ ..-+......+++.|.....+--+|+..++.-.....+-++ -+..|+.+-
T Consensus 26 ~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i---hl~~k~aQa 102 (280)
T COG5074 26 KILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI---HLANKQAQA 102 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc---chhhHHHHH
Confidence 4555555555555544444332221 11245677888999999999999998888743322111111 124566666
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCC--ccchhhhccCChh-H-----hhhHH--HHHHH--H
Q 047293 89 STARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQA--KSNQYAAAQDNDD-F-----IQSES--DRQLL--L 156 (246)
Q Consensus 89 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~--~~~~~~~~~~n~~-~-----~~~~~--~~Q~~--~ 156 (246)
+.++.++-++-..|......|+.... ...|+.+. +..|..+ .+...+ +.+|.+ + +..+. .-+.. -
T Consensus 103 e~~r~Kf~~~I~~yr~i~~~yree~~-e~~rrQy~-Ia~P~ATEdeve~aI-nd~nG~qvfsqalL~anr~geAktaL~E 179 (280)
T COG5074 103 ENVRQKFLKLIQDYRIIDSNYREEEK-EQARRQYI-IAQPEATEDEVEAAI-NDVNGQQVFSQALLNANRRGEAKTALAE 179 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHhhh-hcCCccchHHHHHHh-cccchHHHHHHHHHhcCccchHHHHHHH
Confidence 67777766666666655443321111 12233332 3334333 233333 222322 1 11110 12222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS--AKGQIMMILFLIA 234 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~--~~~~~~~i~~li~ 234 (246)
.+...+.|..|+.++..|-+++.+|..+|.+|.+++|-|+.++..++..+..++..+.++++... .+++|.|.+++|+
T Consensus 180 vq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~i 259 (280)
T COG5074 180 VQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFI 259 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHH
Confidence 45677889999999999999999999999999999999999999999999999999999887543 3455777777777
Q ss_pred HHHHHHHHHH
Q 047293 235 LFIVLFVLVF 244 (246)
Q Consensus 235 ~~i~l~~~~~ 244 (246)
+++|++++||
T Consensus 260 ii~viv~vv~ 269 (280)
T COG5074 260 IIIVIVVVVF 269 (280)
T ss_pred HHHHHHHHHh
Confidence 7776666665
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.22 E-value=5.9e-11 Score=78.78 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 158 KQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 158 ~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
+++|+.|+.|+.+|.+|+++|.+|+.+|..|+++||+|+++++.+..+++.+++++.++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999863
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.19 E-value=2e-10 Score=77.65 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 153 QLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 153 Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
+.++++++|+.|+.|+..|.+++++|.+|+.+|..|+++||+++++++.+..+++.+.+++.++
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999999999999999999999999999999999998763
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.93 E-value=4e-07 Score=78.06 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccc
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASA 222 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~ 222 (246)
-..|++-.++|..-...||+-+..++.-|...+..|+..+..+|+....|+.+..|++....+..+
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~ 227 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG 227 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 346667778899999999999999999999999999999999999999999999999999876544
No 14
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.3e-08 Score=84.06 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
.-+++|+.|+.|+..+.+||.||.+||.|++.||+.||+|.+.+|+...+|..+++|+++++
T Consensus 212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 34589999999999999999999999999999999999999999999999999999999874
No 15
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.3e-05 Score=63.21 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=111.8
Q ss_pred CCCCCCchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHH
Q 047293 1 MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIE 80 (246)
Q Consensus 1 m~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~E 80 (246)
||+-.+.|...|..+...| ...+.+-.+++ +.+-...-.+|++.+..+..-|++++-.+..+ | |..
T Consensus 1 ms~~fe~yEqqy~~l~a~i---t~k~~~~~~~~--~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l---p------~~~ 66 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEI---TKKIGRALSLP--GSEKKQLLSEIDSKLEEANELLDQMDLEVREL---P------PNF 66 (220)
T ss_pred CchHHHHHHHHHHHHHHHH---HHhHHHHhcCC--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---C------chh
Confidence 5555555666665555444 44444444443 44556677899999999999999998887732 2 222
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHH-
Q 047293 81 LEKRRRW---TSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLL- 156 (246)
Q Consensus 81 l~~R~~~---v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~- 156 (246)
|-.+ +...++.++.++..+...... + .....|.++... ..++.......|+++.+
T Consensus 67 ---Rs~~~~KlR~yksdl~~l~~e~k~~~~~-~---~~~~~rde~~~~--------------~~add~~~~~dQR~rLl~ 125 (220)
T KOG1666|consen 67 ---RSSYLSKLREYKSDLKKLKRELKRTTSR-N---LNAGDRDELLEA--------------LEADDQNISADQRARLLQ 125 (220)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHhhcc-c---cccchHHHHHhh--------------hhccccccchhHHHHHHh
Confidence 2222 234444455555554432210 0 001122222210 00111000111333322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccc
Q 047293 157 ----VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKG 224 (246)
Q Consensus 157 ----~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~ 224 (246)
+..--+.|..=+....+..+||..|-.++..|.+-|.+--.-.-.+++.|.++.+-+.-+.++--.++
T Consensus 126 nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk 197 (220)
T KOG1666|consen 126 NTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNK 197 (220)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHH
Confidence 22333456666777788899999999999999999999999999999999999999999987654443
No 16
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0023 Score=52.74 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHH
Q 047293 10 IVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTS 89 (246)
Q Consensus 10 ~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~ 89 (246)
..|..+.+.++.++..+.+......+ .+......+|...|.++...+..++..+. +. ..++..-.+++ +.
T Consensus 3 ~ly~~t~~~~~k~q~~l~rlE~~~~~-~e~~~v~~~i~~sI~~~~s~~~rl~~~~~---~e----pp~~rq~~rlr--~d 72 (213)
T KOG3251|consen 3 ALYQSTNRQLDKLQRGLIRLERTIKT-QEVSAVENSIQRSIDQYASRCQRLDVLVS---KE----PPKSRQAARLR--VD 72 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccc-cchHHHHHHHHHhHHHHHHHHHHHHhHhh---cC----CCCcHHHHHHH--HH
Confidence 45677788888888888777664332 35566777888888888888777777665 22 23344434444 77
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047293 90 TARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSA 169 (246)
Q Consensus 90 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~ 169 (246)
.+...+..+...+.....+..-.....+.|..++..+.+.+. . +...+ +- .+. .-+..|..=+.
T Consensus 73 Ql~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~----~--~~~~~-~D-~el--------~~~d~l~~s~~ 136 (213)
T KOG3251|consen 73 QLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGA----T--GTSIP-FD-EEL--------QENDSLKRSHN 136 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCC----c--cCCCc-ch-HHH--------HhhhHHHHHHh
Confidence 888888888777664332110000112235566654322211 0 00010 10 000 11234555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc-ccchhHHHHHHHHHHH
Q 047293 170 SVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS-AKGQIMMILFLIALFI 237 (246)
Q Consensus 170 ~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~i~~li~~~i 237 (246)
.|..+=..|.+|=+-+.+|+..|..+...|-.....|.-.+.-|.-+-++.. +|+.+||=+++++|++
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~ 205 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIM 205 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6677777889999999999999999999988888877555544444444333 4444444344433333
No 17
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.005 Score=50.84 Aligned_cols=191 Identities=11% Similarity=0.199 Sum_probs=121.6
Q ss_pred CCCCCchHhHHHHHHHHHHHHHHHHHHHHhccCC-------------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 2 SSAQDPFYIVKEEIQDSINKLQSTFHQWENSASD-------------P--GEQVHLKKELLAGCESIEWQVDELDKAIGV 66 (246)
Q Consensus 2 ~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~-------------~--~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~ 66 (246)
|+..-.|...+....+.-.++...+.....+..+ + ..+.....+|...|.++..-.+.+..
T Consensus 1 m~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~---- 76 (231)
T KOG3208|consen 1 MGSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND---- 76 (231)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh----
Confidence 3455678999998888888888877766554221 1 13556666777666666655555544
Q ss_pred HccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHh
Q 047293 67 ASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFI 146 (246)
Q Consensus 67 ~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~ 146 (246)
-...|....-...-+++-+..+.+..+++..+...+...+ .|..++...... ...+ ...+++.
T Consensus 77 ~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~-----------e~~~Ll~s~~~~---~~~~---~~~~~~~ 139 (231)
T KOG3208|consen 77 CASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKR-----------ERESLLESVRAD---ISSY---PSASGFN 139 (231)
T ss_pred hccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhh---hccC---CccCCCc
Confidence 1123432222346689999999999999999998876422 222333211000 0000 0011121
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 147 QSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 147 ~~~~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
.. ..+++| ...|+.=-..|.++=++|..-.+-+..|+-+|..+.+.|.++..+.-..+.-+.++-.+
T Consensus 140 ~~-----e~~lkE-~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~k 206 (231)
T KOG3208|consen 140 RG-----EMYLKE-HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIK 206 (231)
T ss_pred hH-----HHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 10 111122 23455556667777788888889999999999999999999999999999999888766
No 18
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0027 Score=55.09 Aligned_cols=85 Identities=11% Similarity=0.252 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALF 236 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~ 236 (246)
+.++++++..+...+-.+-.+=..|.+=|-.|..-+|.|-+.+.+++..++.++..+.++...+++.+.||.+++|++-+
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 45677888888899988888888999999999999999999999999999999999999999988888888877776665
Q ss_pred HHHHH
Q 047293 237 IVLFV 241 (246)
Q Consensus 237 i~l~~ 241 (246)
++|++
T Consensus 307 ~lLFl 311 (316)
T KOG3894|consen 307 SLLFL 311 (316)
T ss_pred HHHHH
Confidence 55544
No 19
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.0023 Score=52.84 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 164 LDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 164 l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
.+.|..-.+-||..+...++-+++-|..+...+..+|.....|..+..++.+.-.+.
T Consensus 157 aesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 157 AESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhh
Confidence 456666678899999999999999999999999999999999999999999987764
No 20
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=97.33 E-value=0.0034 Score=45.54 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhc-----cCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENS-----ASDP------GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWY 74 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l-----~~~~------~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~ 74 (246)
+.|+..+++|...|..+...+++...+ ..+. .++..++.+|+..+..+...|+.|+......+ ..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~----~~ 78 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSE----GE 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cc
Confidence 469999999999999999988876552 2222 24667777888888888888888877755111 23
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 047293 75 GIDDIELEKRRRWTSTARTQVSSMK 99 (246)
Q Consensus 75 ~is~~El~~R~~~v~~l~~~~~~l~ 99 (246)
..++.+.+.|++.+..|..++.+++
T Consensus 79 ~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 79 EPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999998864
No 21
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.29 E-value=0.0054 Score=43.88 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhH---HHHHHHHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSN---RLDFVQKKVAMVM 217 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~---~l~~~~~~l~~~~ 217 (246)
+.+..+...|...+++-..=-+.+-+-++-|+++++..+.... ...+..+++++..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455555555555554443334555566666766665554444 3344444444443
No 22
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.15 E-value=0.014 Score=42.13 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Q 047293 163 ELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 163 ~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~ 241 (246)
.|......+..--+.+..-.+++++|..-|..+++..+..++.+..+.+-++++-+....-+.+++..|+++++++++|
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666778999999999999999999999999999999998876543333333344344444433
No 23
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.016 Score=43.21 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=15.4
Q ss_pred HHHHHHHhhhHHhHhHHH---HHHHHHHHHHHH
Q 047293 189 ENIIDELGTEMDSTSNRL---DFVQKKVAMVMK 218 (246)
Q Consensus 189 ~~lLd~i~~~v~~~~~~l---~~~~~~l~~~~~ 218 (246)
++-||+|++..|..+..- ++...++++-+-
T Consensus 56 ~ekL~~L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 56 GEKLDELDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666555444 444444444433
No 24
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=96.84 E-value=0.028 Score=41.85 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHhc-----cCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047293 4 AQDPFYIVKEEIQDSINKLQSTFHQWENS-----ASDP------GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPS 72 (246)
Q Consensus 4 ~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l-----~~~~------~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~ 72 (246)
....|+..+++|...|..++..+.+...+ .+.. ..+..+..++....+.+...|+.|+....... .
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~---~ 78 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENR---A 78 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---c
Confidence 35679999999999999999887776552 2211 12445556666666666666666665543211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047293 73 WYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGA 107 (246)
Q Consensus 73 k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~ 107 (246)
.++.+-+.|+..+..|..++.++...|+..+.
T Consensus 79 ---~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 79 ---SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred ---cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566799999999999999999999986543
No 25
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.04 Score=48.29 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLF 240 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~ 240 (246)
...|.+|++---.+..+-..=|+.|+.=..-+-+-.+.|+++.+.+++|.. .-++...|+.+|||+++|+++|+++
T Consensus 212 Eksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~----~qkkaRK~k~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 212 EKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK----YQKKARKWKIIIIIILIIIIVVLVV 287 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhceeeeehHHHHHHHHHhh
Confidence 333444444333333333333333333333344556677777788877744 4444455666666666655555555
Q ss_pred HHHH
Q 047293 241 VLVF 244 (246)
Q Consensus 241 ~~~~ 244 (246)
++++
T Consensus 288 ~i~~ 291 (297)
T KOG0810|consen 288 VIVV 291 (297)
T ss_pred hhcc
Confidence 4443
No 26
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=96.36 E-value=0.14 Score=39.91 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=71.3
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhc-----c-CC-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENS-----A-SD-P----GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWY 74 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l-----~-~~-~----~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~ 74 (246)
+.|+..+.+|...|..++..+.....+ . .+ . ..+..+..++....+.+...|+.|+........ ++
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~---~~ 78 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA---LN 78 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC
Confidence 469999999999999999887766542 1 11 1 134556666677777777777777665442221 22
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 047293 75 GIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANG 109 (246)
Q Consensus 75 ~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~ 109 (246)
++.+.+.|+..+..|.+++.+....|+..+..+
T Consensus 79 --~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 79 --GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999776543
No 27
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=96.16 E-value=0.13 Score=34.40 Aligned_cols=59 Identities=10% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
...|..-...+...-++|.++..++..|++.|..+...++.+...+..+.+-++++-++
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 34677788888999999999999999999999999999999999999999999887654
No 28
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.17 Score=42.31 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIAL 235 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~ 235 (246)
+|++.-+-+..++.-|....++-..|...+ -+...+|....+++.+|-+-. +..++.+-+|+.+|++++++|
T Consensus 193 t~ael~qLfndm~~~V~eq~e~Vd~I~~~~-------~~~~~n~~~g~~h~d~Avksa-RaaRkkki~c~gI~~iii~vi 264 (280)
T COG5074 193 TMAELTQLFNDMEELVIEQQENVDVIDKNV-------EDAQENVEQGVGHTDKAVKSA-RAARKKKIRCYGICFIIIIVI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHhhH-------hhHHhhHHHhhhhHHHHHHHH-HHHHhcceehhhhHHHHHHHH
Confidence 455666666666777776666665555544 567788999999999999984 445555777776666555555
Q ss_pred HHHH
Q 047293 236 FIVL 239 (246)
Q Consensus 236 ~i~l 239 (246)
++|+
T Consensus 265 v~vv 268 (280)
T COG5074 265 VVVV 268 (280)
T ss_pred HHHH
Confidence 4444
No 29
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.53 Score=40.69 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHH
Q 047293 153 QLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFL 232 (246)
Q Consensus 153 Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l 232 (246)
..+-+.+-...+-++.+....|..|-..=|+-|+.=..-++....+|..+...|.+|.+.=++..+.. |...||++.
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~ 254 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999988766655542 555666666
Q ss_pred HHHHHHHHHHHH
Q 047293 233 IALFIVLFVLVF 244 (246)
Q Consensus 233 i~~~i~l~~~~~ 244 (246)
+++++.+++++.
T Consensus 255 v~lii~l~i~~~ 266 (269)
T KOG0811|consen 255 VGLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
No 30
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.27 E-value=0.31 Score=41.75 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH----HHccccchhHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM----KKASAKGQIMMILF 231 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~i~~ 231 (246)
.++.+...-+.|.. .+-.+|..+.+-...=+..|.+=..-++++...+......|...- +..+.++.||.+++
T Consensus 157 ~l~~~~~~QE~L~~---em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~ 233 (251)
T PF09753_consen 157 ILQHHRNLQEDLTE---EMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLM 233 (251)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34455555566655 455667777777666677777777888888888888877777653 34445566555444
Q ss_pred HHHHHHHHHH
Q 047293 232 LIALFIVLFV 241 (246)
Q Consensus 232 li~~~i~l~~ 241 (246)
++++++++++
T Consensus 234 i~~v~~~Fi~ 243 (251)
T PF09753_consen 234 IFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 31
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.58 Score=40.20 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIA 234 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~ 234 (246)
+-+..-.+.+-+|...-..|+.+-..=|..|+.=..-|+.+..++..|...|.+|+..=++ .+.|+.+|+++++|+
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Llil~vv 270 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLLILLVV 270 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHHHHHHH
Confidence 3455666677777777777777777777777777777777777888777777777665433 355677777776666
Q ss_pred HHHHHHHH
Q 047293 235 LFIVLFVL 242 (246)
Q Consensus 235 ~~i~l~~~ 242 (246)
.+|+++++
T Consensus 271 ~lfv~l~~ 278 (283)
T COG5325 271 LLFVSLIK 278 (283)
T ss_pred HHHHHHHH
Confidence 55555544
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=93.80 E-value=0.97 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 180 TIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 180 ~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
.+...++.+.+-++.++..-+.....+.....++.++-...
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777777888888888888887764
No 33
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=90.45 E-value=2.7 Score=30.66 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
.|.++++.|.+.|..+.+.=..+..|++.|++.|+-|...+..-+.||.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888999999999999999999999999999999998888887777754
No 34
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=6.8 Score=33.23 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALF 236 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~ 236 (246)
++.-...+-.+...-...++--..=+.-+++...-+|.++..++++..++..+++ .-...+.||.+..++.+++++
T Consensus 154 Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~----~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 154 LDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR----MASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccccchhHHHHHHHHHHHH
Confidence 3333333333333333333333333445567888889999999999999988777 334557789988877666655
Q ss_pred HHHHH
Q 047293 237 IVLFV 241 (246)
Q Consensus 237 i~l~~ 241 (246)
+++++
T Consensus 230 v~i~~ 234 (235)
T KOG3202|consen 230 VIIFI 234 (235)
T ss_pred HHHhc
Confidence 55553
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=89.47 E-value=12 Score=31.48 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHh
Q 047293 204 NRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 204 ~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~~ 245 (246)
...++.-++++...+....+..++|-.|..+++||++|++++
T Consensus 127 ~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 127 EENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444455555566555555566655555544444444443
No 36
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=88.63 E-value=29 Score=34.93 Aligned_cols=12 Identities=8% Similarity=-0.172 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 047293 175 GGVGLTIHDELV 186 (246)
Q Consensus 175 ~~~~~~i~~el~ 186 (246)
+..-..++.++.
T Consensus 363 k~~l~~~~~~i~ 374 (806)
T PF05478_consen 363 KRDLDSIGKQIR 374 (806)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.19 E-value=6.2 Score=26.76 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHH---hHhHHHHHHHHHHHHHHHHccccchhHH
Q 047293 180 TIHDELVAQENIIDELGTEMD---STSNRLDFVQKKVAMVMKKASAKGQIMM 228 (246)
Q Consensus 180 ~i~~el~~Q~~lLd~i~~~v~---~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 228 (246)
+|.+.+.....-+|+++..++ ......+..-..+.+=+.+-++..+|.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888776664 4444444444445555555555555543
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.16 E-value=7.5 Score=29.67 Aligned_cols=58 Identities=14% Similarity=0.330 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
-+.|+.+...+.+..++...|.+||.+=.+-+.++..+++..+..+..--.++..+-.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3668899999999999999999999999999999999999999999888888876643
No 39
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=85.23 E-value=9.3 Score=25.83 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhHHhHhHHH
Q 047293 187 AQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 187 ~Q~~lLd~i~~~v~~~~~~l 206 (246)
+=.+-||.++..++-+.+.+
T Consensus 16 ~i~~rLd~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 16 EIMKRLDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33455677777777666655
No 40
>PRK11637 AmiB activator; Provisional
Probab=83.88 E-value=36 Score=31.41 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDS 201 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~ 201 (246)
..+..+......+...-..+..+..++...++.+..+...
T Consensus 191 ~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 191 EKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554443
No 41
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=83.72 E-value=11 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhHHhHhHHH
Q 047293 185 LVAQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 185 l~~Q~~lLd~i~~~v~~~~~~l 206 (246)
..+=.+-||.+++.|+.+.+.+
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~ 35 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677777777666655
No 42
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=22 Score=30.98 Aligned_cols=60 Identities=10% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
-|+.....+.+|++....|..+-..=++-+..=....|+.+-+++.+++.|-+--.++..
T Consensus 228 ~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS 287 (311)
T KOG0812|consen 228 TMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS 287 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence 456666777777777777777666666666666677889999999999998877776654
No 43
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.26 E-value=59 Score=32.76 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=29.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHh--ccCC-ch---hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWEN--SASD-PG---EQV---HLKKELLAGCESIEWQVDELDKAIGVA 67 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~--l~~~-~~---~~~---~~~~ei~~~i~~l~~~l~~L~~~l~~~ 67 (246)
|....+.+.+.|+.+...+-..-. +... -+ .+. ....+++..++.+...+.+|+.....+
T Consensus 204 y~~~~~~v~~~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL 272 (806)
T PF05478_consen 204 YSELKDHVSSDLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQL 272 (806)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777776655433211 1111 01 112 244455566666666666666555433
No 44
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=82.05 E-value=14 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 194 ELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 194 ~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
.++..+.....++..--+++..+.+.++
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 3557778888888888888888877643
No 45
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=81.94 E-value=11 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhHHhHhHHH-HHHHHHHH
Q 047293 186 VAQENIIDELGTEMDSTSNRL-DFVQKKVA 214 (246)
Q Consensus 186 ~~Q~~lLd~i~~~v~~~~~~l-~~~~~~l~ 214 (246)
.+=.+-||++++.|+.+.+.+ ++.-+++.
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvG 47 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGKKVG 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 334456777777777776655 34444433
No 46
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=81.92 E-value=10 Score=25.62 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Q 047293 193 DELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIV 238 (246)
Q Consensus 193 d~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~ 238 (246)
.++...+|....+++.++..+..-.-+.-++---++..+++-++++
T Consensus 15 ~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~ 60 (70)
T PF04210_consen 15 NEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHH
Confidence 4566677788888888888877766654444333344344333333
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.87 E-value=31 Score=29.22 Aligned_cols=89 Identities=11% Similarity=0.233 Sum_probs=48.6
Q ss_pred chHhHHHHHHHHHHHHHHH---HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQST---FHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEK 83 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~---~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~ 83 (246)
-|....++|...+..++.. |..... ....+..-....-+.|+.|..|+..|+..+...+....+ ....+.+
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~k---E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~---~~~~i~r 85 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRK---EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK---RQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3455555555555554433 222221 112344445566677888899999999988865543211 2333444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 84 RRRWTSTARTQVSSMKKA 101 (246)
Q Consensus 84 R~~~v~~l~~~~~~l~~~ 101 (246)
....+..|+.+++++...
T Consensus 86 ~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666666555
No 48
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=81.35 E-value=15 Score=25.37 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHhhhHHhHhHHHHHHHHHHHHHHHHccccc
Q 047293 193 DELGTEMDSTSNRLDFVQKKVAMVMKKASAKG 224 (246)
Q Consensus 193 d~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~ 224 (246)
.++...+|....+++.++..+..-.-+.-++-
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhH
Confidence 34556667788888888888777666654543
No 49
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=81.15 E-value=15 Score=25.12 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 37 GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 37 ~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.+-.....++...|..+...|++++-.+. ++++.+-..=..-|..++++++.++..+.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~---------~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR---------SLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777777777777777766654 34556555556666777777777776653
No 50
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=80.97 E-value=18 Score=26.01 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc-cccchhHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA-SAKGQIMM 228 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~ 228 (246)
++|..+..|+..-..+..--..|.+=+..|....+.++-.+|.-... ....++.++..+++ +..++|++
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~Knir~~Kmwil 77 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWIL 77 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45556666666666666666667777777888887777777774332 33444444444442 23444433
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.07 E-value=14 Score=24.87 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
++.|..|...+.-+-..-..+++.|-.|...||.+...+.....++....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888888888888888888887777776543
No 52
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=79.61 E-value=36 Score=28.60 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH----HHHHccccchhHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM----VMKKASAKGQIMMIL 230 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~i~ 230 (246)
+..||---++|.+.+..|....... -+..|+.+- .=..-+..+...+..+...+.- +-+..++++.+|..+
T Consensus 146 l~~q~~lQeeLaesll~LArslKtn--alAfqsalk-eDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~ 220 (244)
T KOG2678|consen 146 LEDQDTLQEELAESLLKLARSLKTN--ALAFQSALK-EDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYI 220 (244)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH-hhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHH
Confidence 4455555567777776666555553 344455543 3344455555555555555544 334555664444433
No 53
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=79.50 E-value=28 Score=27.35 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 39 QVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWY-GIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 39 ~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~-~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.......+++.+..|+..+++|...+..+...-.-| ..++.|++- .+.++..++.+++..+..
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~---~veel~eqV~el~~i~em 133 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG---IVEELEEQVNELKMIVEM 133 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999887532223 345565554 788999999988877654
No 54
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=79.06 E-value=16 Score=24.71 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHH
Q 047293 194 ELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLI 233 (246)
Q Consensus 194 ~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li 233 (246)
++...+|....+++.++..+..-.-+.-++---++..+++
T Consensus 16 ~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~vi 55 (70)
T TIGR01149 16 EVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 4555667788888888888877766654554333443433
No 55
>PHA03240 envelope glycoprotein M; Provisional
Probab=79.05 E-value=1.8 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 047293 224 GQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~ 242 (246)
..|++|+++|+++|+|+++
T Consensus 213 ~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655
No 56
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=78.43 E-value=18 Score=24.46 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhHHhHhHHH
Q 047293 184 ELVAQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 184 el~~Q~~lLd~i~~~v~~~~~~l 206 (246)
+..+=++-||+|+..|+-+.+.+
T Consensus 16 dfne~~kRLdeieekvef~~~Ev 38 (75)
T COG4064 16 DFNEIHKRLDEIEEKVEFVNGEV 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 44445566777777777666655
No 57
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.81 E-value=29 Score=26.03 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
|+-.+-+...|...-+-+..+. ||++=.+-|..-...+.++..++ .+++=.--.
T Consensus 39 deVv~IMr~NV~KVlER~ekL~-~L~drad~L~~~as~F~~~A~kl---krk~wWkn~ 92 (116)
T KOG0860|consen 39 DEVVDIMRENVEKVLERGEKLD-ELDDRADQLQAGASQFEKTAVKL---KRKMWWKNC 92 (116)
T ss_pred HHHHHHHHHhHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3334444444444433333332 23333333333334444444444 444444443
No 58
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=75.66 E-value=3.7 Score=28.95 Aligned_cols=12 Identities=0% Similarity=0.268 Sum_probs=6.2
Q ss_pred HHHHHHHHHccc
Q 047293 211 KKVAMVMKKASA 222 (246)
Q Consensus 211 ~~l~~~~~~~~~ 222 (246)
.++.+++.++.+
T Consensus 20 DQL~qlVsrN~s 31 (84)
T PF06143_consen 20 DQLEQLVSRNRS 31 (84)
T ss_pred HHHHHHHHhChH
Confidence 355566655443
No 59
>PRK02119 hypothetical protein; Provisional
Probab=74.78 E-value=24 Score=24.12 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 158 KQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 158 ~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
..-.+.|+.|+..+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567888888888888888888888888888888777776666665544
No 60
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=74.73 E-value=5.4 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 047293 225 QIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 225 ~~~~i~~li~~~i~l~~~~~ 244 (246)
+|++.+++++++++++++.|
T Consensus 39 ~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 39 QYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 61
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=74.53 E-value=4.2 Score=28.70 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=6.1
Q ss_pred HhHhHHHHHHHHHHHH
Q 047293 200 DSTSNRLDFVQKKVAM 215 (246)
Q Consensus 200 ~~~~~~l~~~~~~l~~ 215 (246)
|+.+.-+.+...-++.
T Consensus 20 DQL~qlVsrN~sfird 35 (84)
T PF06143_consen 20 DQLEQLVSRNRSFIRD 35 (84)
T ss_pred HHHHHHHHhChHHHHH
Confidence 3333334443333333
No 62
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=74.02 E-value=4.3 Score=28.44 Aligned_cols=10 Identities=30% Similarity=1.019 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 047293 235 LFIVLFVLVF 244 (246)
Q Consensus 235 ~~i~l~~~~~ 244 (246)
++|+|+|++|
T Consensus 35 VIIiLlImlf 44 (85)
T PF10717_consen 35 VIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 63
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.59 E-value=63 Score=28.34 Aligned_cols=219 Identities=12% Similarity=0.137 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH
Q 047293 11 VKEEIQDSINKLQSTFHQ--WENSASDP---GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRR 85 (246)
Q Consensus 11 ~~~ev~~~l~~l~~~~~~--~~~l~~~~---~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~ 85 (246)
...+|+..+..+...+.+ +.+..+.. .++..++-+|-..+..+...+..+..+.... .|..-.+...=...=-
T Consensus 69 ~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~--~~~e~~~~~n~~~~la 146 (305)
T KOG0809|consen 69 YLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQL--SPSERLLRKNAQGYLA 146 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHH
Confidence 456677777777666554 66654433 3577888889999999988888888877521 1111111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCC---CCCCCCccchhhhhhhhcCCCCCCCccch-------hhhccCChhHhhhHHHHHHH
Q 047293 86 RWTSTARTQVSSMKKAVLSGG---ANGVGTMSASGMRRELMRLPNSHQAKSNQ-------YAAAQDNDDFIQSESDRQLL 155 (246)
Q Consensus 86 ~~v~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~r~~l~~~~~~~~~~~~~-------~~~~~~n~~~~~~~~~~Q~~ 155 (246)
..+..+..++....+.|-+.- .... ......-......|... .+.+ .+....|+.+. .....
T Consensus 147 ~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~--~~~e~~~~~~~~~~dd~--d~~~~~~qe~ql~~~e~~~~~~----~erE~ 218 (305)
T KOG0809|consen 147 LQLQTLSREFRGLQSKYLKRLRNREENS--QEYEDSLDNTVDLPDDE--DFSDRTFQEQQLMLFENNEEVV----REREK 218 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhcc--cchhhhccccccCcchh--hhhhhhHHHHHHHHHhcchHHH----HHHHH
Confidence 233444455555444443211 1100 00000000000001000 0100 00012233332 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIAL 235 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~ 235 (246)
-+.+--+.+-+|......|..+-.+=|.-|+.=.--++++.-.++.+...|.+|.+ .-++++.++.+|+.+++|++
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~l~ii~ 294 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER----YQKRNKKMKVILMLTLLIIA 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHHHHHHH
Confidence 45566678888999999999999999988888888888888889988888877654 55677878888888888887
Q ss_pred HHHHHHHH
Q 047293 236 FIVLFVLV 243 (246)
Q Consensus 236 ~i~l~~~~ 243 (246)
+++++++.
T Consensus 295 llvllilk 302 (305)
T KOG0809|consen 295 LLVLLILK 302 (305)
T ss_pred HHHHHHhh
Confidence 77777764
No 64
>PRK00846 hypothetical protein; Provisional
Probab=72.26 E-value=30 Score=24.03 Aligned_cols=49 Identities=12% Similarity=0.010 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFV 209 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~ 209 (246)
...|+.|...+.-+-..-..+|+.|-.|...+|.+...+.....+++.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4668888888888888888888888888888888888777777766654
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.88 E-value=26 Score=36.37 Aligned_cols=75 Identities=8% Similarity=0.132 Sum_probs=42.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKR 84 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R 84 (246)
+|...+.++++-|..++..+....-...+-..+.....++|+.|..+..+|.+++..|..+... ..++..||..-
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~---~~~a~~~LesL 1272 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS---LPLAGKDLESL 1272 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc---cchhhhhHHHH
Confidence 4555566666666666665533221111123456667778888888888888888777755432 23444554433
No 66
>PRK00736 hypothetical protein; Provisional
Probab=71.06 E-value=29 Score=23.37 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
..|+.|+..+..+-..-..+++.|-.|...||.+...+.....++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888888888888888877777666666644
No 67
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.84 E-value=62 Score=27.14 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRDP-SWYGIDDIELEKRRRWTSTARTQVSSMKKAV 102 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~~-~k~~is~~El~~R~~~v~~l~~~~~~l~~~~ 102 (246)
.+||+...+++.+++-.--++..+.+.. +.|.++..++..+......+..+++.|-..+
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql 67 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQL 67 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHH
Confidence 3677777777777776655555444431 2245555555554444445555555444443
No 68
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=69.92 E-value=2.2 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 047293 234 ALFIVLFVLVF 244 (246)
Q Consensus 234 ~~~i~l~~~~~ 244 (246)
+|+++|+++-|
T Consensus 6 IIlvvLLliSf 16 (19)
T PF13956_consen 6 IILVVLLLISF 16 (19)
T ss_pred HHHHHHHhccc
Confidence 33444444433
No 69
>PRK04406 hypothetical protein; Provisional
Probab=69.78 E-value=33 Score=23.59 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
.-.+.|+.|+..+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567788888888888888888888888888887777776666555543
No 70
>PRK04325 hypothetical protein; Provisional
Probab=69.23 E-value=34 Score=23.45 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
+.|+.|+..+..+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888888888888888888877776666665544
No 71
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=69.12 E-value=3.1 Score=39.11 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 192 IDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 192 Ld~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
|+.++..++++...++..++-+..+...
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566677777777777777777655543
No 72
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.10 E-value=35 Score=23.56 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.||..|+.+..+++.|+..+..++.+-....-..+-+..--..+.++..++.++.+.++
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888888888888888888877764322110112234444555566666666665554
No 73
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.03 E-value=1.1e+02 Score=29.38 Aligned_cols=200 Identities=13% Similarity=0.188 Sum_probs=96.8
Q ss_pred HhHHHHHHHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHH
Q 047293 9 YIVKEEIQDSI-NKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRW 87 (246)
Q Consensus 9 ~~~~~ev~~~l-~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~ 87 (246)
++.|....... ..++..|+.|..+...-..+.....+....+..++..+.+|++ .+|.-. -.+++...+.-
T Consensus 145 LD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~------~~l~~g--E~e~L~~e~~r 216 (557)
T COG0497 145 LDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE------LNLQPG--EDEELEEERKR 216 (557)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCc--hHHHHHHHHHH
Confidence 33333333333 4477888888875433233444445555566666666666654 233211 23456666666
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-CCCccchh-h-hhhhhcCCCCCCCccchhhhccCChhHh--hhHHHHHHHHHHHHH-
Q 047293 88 TSTARTQVSSMKKAVLSGGANG-VGTMSASG-M-RRELMRLPNSHQAKSNQYAAAQDNDDFI--QSESDRQLLLVKQQD- 161 (246)
Q Consensus 88 v~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~-~-r~~l~~~~~~~~~~~~~~~~~~~n~~~~--~~~~~~Q~~~~~~qD- 161 (246)
+.+..+-...+.+.+..-.... +++....- . ...+-.... .++++.+.. ..-.+.++ ......=+..+++-|
T Consensus 217 Lsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~-~d~~l~~~~-~~l~ea~~~l~ea~~el~~~~~~le~ 294 (557)
T COG0497 217 LSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSE-YDGKLSELA-ELLEEALYELEEASEELRAYLDELEF 294 (557)
T ss_pred HhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhc-cChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6665555555555443221110 00000000 0 011110000 000111110 00011221 111111123344333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhH---HHHHHHHHHHHHHH
Q 047293 162 --EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSN---RLDFVQKKVAMVMK 218 (246)
Q Consensus 162 --~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~---~l~~~~~~l~~~~~ 218 (246)
..|+.+..-+..|+.++.-=+..+++=-+..+.+.+.++.... .++.-..++.++..
T Consensus 295 Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~ 356 (557)
T COG0497 295 DPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKA 356 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4588888889999999988888888888888888888776544 45555555555554
No 74
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=68.84 E-value=54 Score=25.64 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=13.7
Q ss_pred ChhHhhhHHHHHHHHHHHHHHHHHHH
Q 047293 142 NDDFIQSESDRQLLLVKQQDEELDEL 167 (246)
Q Consensus 142 n~~~~~~~~~~Q~~~~~~qD~~l~~l 167 (246)
|..+++.....|+.++.+.-++|+.+
T Consensus 33 Ne~ll~~~~~aq~~~l~~fk~elE~~ 58 (144)
T PF11657_consen 33 NERLLEDSAKAQQEQLDQFKEELEEI 58 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455656665555555553
No 75
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=68.32 E-value=39 Score=26.83 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 165 DELSASVQRIGGVGLTIH 182 (246)
Q Consensus 165 ~~l~~~v~~l~~~~~~i~ 182 (246)
+.+..-..+|++++..+.
T Consensus 55 ~~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 55 DSLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445556666655543
No 76
>PRK00295 hypothetical protein; Provisional
Probab=68.06 E-value=34 Score=23.02 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
+.|..|...+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888888888888888877777766666654
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.84 E-value=81 Score=27.29 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
+.+..|......+..+...+.....+++.++..+-..-+.+......-.
T Consensus 169 ~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 169 DKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577788888889999999999999999999998888888877665444
No 78
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=66.72 E-value=38 Score=23.36 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHhHhHHH
Q 047293 154 LLLVKQQDEELDELSASVQRIGGVGLT---IHDELVAQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 154 ~~~~~~qD~~l~~l~~~v~~l~~~~~~---i~~el~~Q~~lLd~i~~~v~~~~~~l 206 (246)
++-+..-|..++.|...|..++.-... ++.-++.|..-|+.++..|..-++-|
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788889999998888876666 77778888888888887776665543
No 79
>COG5570 Uncharacterized small protein [Function unknown]
Probab=66.05 E-value=28 Score=22.19 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 46 LLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKK 100 (246)
Q Consensus 46 i~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~ 100 (246)
|.+.+..++..=..|++.+.-.-+.|+.-.+--.|+.+|+- .|+.++..++.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL---~lKeeIEkLka 54 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKL---RLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHH---HHHHHHHHHhc
Confidence 56677778888888888888777777544334455565554 45555555543
No 80
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=65.30 E-value=10 Score=27.67 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=13.0
Q ss_pred HHHHHHHHHccccchh-HHHHHHHH
Q 047293 211 KKVAMVMKKASAKGQI-MMILFLIA 234 (246)
Q Consensus 211 ~~l~~~~~~~~~~~~~-~~i~~li~ 234 (246)
+++.+.++..++.... ++|+++||
T Consensus 2 ~~~~k~~~~~kgFTLvEMLiVLlII 26 (107)
T COG4537 2 KKMKKFLKHKKGFTLVEMLIVLLII 26 (107)
T ss_pred hhHHHHHHhcccccHHHHHHHHHHH
Confidence 4667777776555444 33444433
No 81
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=65.07 E-value=7.1 Score=27.38 Aligned_cols=16 Identities=13% Similarity=0.690 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 047293 226 IMMILFLIALFIVLFV 241 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~ 241 (246)
.++|++.||||++++|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556777777777765
No 82
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.98 E-value=41 Score=22.88 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
++.|..|+..+.-+-..-..+++.|-.|...||.+...+.....++..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777777777777777776666665555543
No 83
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=64.55 E-value=7 Score=20.66 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 047293 227 MMILFLIA 234 (246)
Q Consensus 227 ~~i~~li~ 234 (246)
..|++|++
T Consensus 7 alivVLFI 14 (24)
T PF09680_consen 7 ALIVVLFI 14 (24)
T ss_pred hhHHHHHH
Confidence 34444433
No 84
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.31 E-value=26 Score=28.91 Aligned_cols=18 Identities=6% Similarity=0.329 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFVLVF 244 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~ 244 (246)
.||+++++++++.+++++
T Consensus 191 ~~iv~~~~~~~iyiiv~~ 208 (217)
T KOG0859|consen 191 KLIVLGVSISLIYIIVAR 208 (217)
T ss_pred ehhhhhHHHHHHHHHHHH
Confidence 445555555555555544
No 85
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=64.01 E-value=6.3 Score=28.29 Aligned_cols=7 Identities=43% Similarity=0.638 Sum_probs=3.2
Q ss_pred HHHHHcc
Q 047293 215 MVMKKAS 221 (246)
Q Consensus 215 ~~~~~~~ 221 (246)
+++++.+
T Consensus 3 ~i~kK~K 9 (96)
T PF13800_consen 3 KILKKAK 9 (96)
T ss_pred hHHHHHH
Confidence 4455443
No 86
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=63.72 E-value=48 Score=23.17 Aligned_cols=41 Identities=7% Similarity=0.253 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 167 LSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 167 l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
+..++..+-+-+..+.+ ++...+-|.+-...+.+...++++
T Consensus 19 m~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 19 MRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333332 223333333444444444444433
No 87
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=63.27 E-value=9.6 Score=31.61 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=7.1
Q ss_pred HHHccccchhHHHHHHHH
Q 047293 217 MKKASAKGQIMMILFLIA 234 (246)
Q Consensus 217 ~~~~~~~~~~~~i~~li~ 234 (246)
++...+.+.-++||++||
T Consensus 120 ~CEen~~K~amLIClIII 137 (227)
T PF05399_consen 120 ICEENNNKMAMLICLIII 137 (227)
T ss_pred hhhcCccchhHHHHHHHH
Confidence 333333334344444443
No 88
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=63.26 E-value=19 Score=33.41 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHhh--hHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHhC
Q 047293 191 IIDELGT--EMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT 246 (246)
Q Consensus 191 lLd~i~~--~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~~~ 246 (246)
++.++++ .+-.+-+.+..+.-++.++++.-.+.+.+|.+-+.+.=++|++|++-||
T Consensus 493 l~~d~~~~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYT 550 (554)
T KOG4677|consen 493 LYRDLKDRQQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYT 550 (554)
T ss_pred HhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4455554 5556667778888888899887776666777666666677777776665
No 89
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=63.18 E-value=10 Score=24.95 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 047293 227 MMILFLIALFIVLFVLVFLT 246 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~~~ 246 (246)
.-.+++.+++++|++++|++
T Consensus 38 ~~~i~~~~~i~~l~v~~~~~ 57 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVWIFMT 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666653
No 90
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.31 E-value=1.1e+02 Score=26.56 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHhccC------------------------CchhHHHHHHHHHHHHHHHHHHHH
Q 047293 3 SAQDPFYIVKEEIQDSINKLQSTFHQWENSAS------------------------DPGEQVHLKKELLAGCESIEWQVD 58 (246)
Q Consensus 3 ~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~------------------------~~~~~~~~~~ei~~~i~~l~~~l~ 58 (246)
...|.|.++++-+..-+..++..-+=-..++. -+-++.+...-++..|+.+...+.
T Consensus 43 d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q 122 (338)
T KOG3647|consen 43 DEEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQ 122 (338)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999888888776543111011111 012456677788889999988888
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 59 ELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKK 100 (246)
Q Consensus 59 ~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~ 100 (246)
.+...+..+.... ..+ ..-+++|+.-++.+++++..+.+
T Consensus 123 ~~~~~Lnnvasde--a~L-~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 123 SSRAQLNNVASDE--AAL-GSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHhhHH--HHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887654321 122 34478888888888888876653
No 91
>PHA02844 putative transmembrane protein; Provisional
Probab=60.06 E-value=5 Score=27.45 Aligned_cols=8 Identities=0% Similarity=0.355 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 047293 227 MMILFLIA 234 (246)
Q Consensus 227 ~~i~~li~ 234 (246)
-.+.++++
T Consensus 47 ~~~~~ii~ 54 (75)
T PHA02844 47 STKIWILT 54 (75)
T ss_pred hHHHHHHH
Confidence 34455544
No 92
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.50 E-value=1.9e+02 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 75 GIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 75 ~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.+|.+|..- ++-+..+..+++.|+..+..
T Consensus 629 ~LS~AEr~~-~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 629 VLSEAEREF-KKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 588887433 33356666666666665543
No 93
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=59.10 E-value=14 Score=24.03 Aligned_cols=15 Identities=0% Similarity=0.230 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFV 241 (246)
Q Consensus 227 ~~i~~li~~~i~l~~ 241 (246)
+|.++.+++++++.|
T Consensus 9 ~~~Vi~l~vl~~~~F 23 (58)
T PF13314_consen 9 YILVIILIVLFGASF 23 (58)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 94
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=59.09 E-value=10 Score=24.74 Aligned_cols=19 Identities=32% Similarity=0.787 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 047293 225 QIMMILFLIALFIVLFVLV 243 (246)
Q Consensus 225 ~~~~i~~li~~~i~l~~~~ 243 (246)
.+.++.+|+.++|++++++
T Consensus 42 ~~~~~~~li~aLi~v~vvL 60 (64)
T COG4068 42 NFMILMFLILALILVMVVL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455666666665555544
No 95
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=58.92 E-value=11 Score=20.27 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=2.3
Q ss_pred HHHHHH
Q 047293 227 MMILFL 232 (246)
Q Consensus 227 ~~i~~l 232 (246)
..|++|
T Consensus 9 ~livVL 14 (26)
T TIGR01732 9 ALIVVL 14 (26)
T ss_pred HHHHHH
Confidence 333333
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.85 E-value=1.4e+02 Score=27.03 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhH--HHHHHHHHHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSN--RLDFVQKKVAMVMKK 219 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~--~l~~~~~~l~~~~~~ 219 (246)
+.....+++|..+...-..|.+|++....-+++=+..|..+.- +++.|..+|+.=+..
T Consensus 287 ~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 287 EKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455666677776666677888888888888888888887776 777777777765543
No 97
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=58.20 E-value=11 Score=35.46 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=9.3
Q ss_pred HhhhHHhHhHHHHHHHHHHHH
Q 047293 195 LGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 195 i~~~v~~~~~~l~~~~~~l~~ 215 (246)
++.+..++...++.+...+.+
T Consensus 436 IS~eL~~vn~sL~~A~~~L~~ 456 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLDK 456 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 98
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=58.15 E-value=17 Score=20.88 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=11.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~~~ 244 (246)
.+-+..|.+|.+.+++.++.+|
T Consensus 6 ~Gal~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 6 KGALGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 99
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=58.04 E-value=1.1e+02 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHccccchhHHHHHHHHHHHHHHH
Q 047293 217 MKKASAKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 217 ~~~~~~~~~~~~i~~li~~~i~l~~ 241 (246)
++..|.|+.|.++++=|++|+++.+
T Consensus 147 IRr~STwgT~~lmgvNvllFl~~~~ 171 (207)
T PF05546_consen 147 IRRASTWGTWGLMGVNVLLFLVAQL 171 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667776666554444444433
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.21 E-value=1.1e+02 Score=25.34 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 175 GGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 175 ~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
.+....+.+.+..-+..+.+++..-+.....+..+..++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544445555555555555555555555555444
No 101
>PRK10132 hypothetical protein; Provisional
Probab=56.70 E-value=79 Score=23.41 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCCCCch------HhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047293 1 MSSAQDPF------YIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDE 59 (246)
Q Consensus 1 m~~~~Dpf------~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~ 59 (246)
||+...+. ....+|+...+..++..+..... ..+.+...+...+...++.....+.+
T Consensus 1 ~~~~~~~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~--~~~~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGS--DAKGEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45554443 35555555555555555433322 11223344444444444444444333
No 102
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=56.68 E-value=76 Score=30.58 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 153 QLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENII 192 (246)
Q Consensus 153 Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lL 192 (246)
-.++....+..+..++.+|..|++.-..+. ++..||++=
T Consensus 426 ~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~-~~v~qnr~~ 464 (561)
T PF00429_consen 426 YRQLSNALEEDLQALEDSISALQEQLTSLA-EVVLQNRRA 464 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCchh
Confidence 345667778888888888888887766655 455677653
No 103
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=56.50 E-value=1.9e+02 Score=27.83 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 25 TFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.+..|+.+..++.+ .-....+-+..+.+...+.++...|..++. --..|+...-.-|.+|-+++.++.+.+..
T Consensus 116 ff~s~q~la~~P~~-~a~r~~vl~~a~~l~~~in~~~~~L~~l~~------~i~~~I~~~V~~vNsLl~qIa~lN~qI~~ 188 (552)
T COG1256 116 FFNSLQELASNPSD-TAARQAVLSKAQTLVNQINNTYEQLTDLRK------DINAEIAATVDEVNSLLKQIADLNKQIRK 188 (552)
T ss_pred HHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555333322 344556666666677777777666665543 23577777788888888888888887764
Q ss_pred C
Q 047293 105 G 105 (246)
Q Consensus 105 ~ 105 (246)
.
T Consensus 189 ~ 189 (552)
T COG1256 189 V 189 (552)
T ss_pred h
Confidence 3
No 104
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=56.35 E-value=18 Score=23.59 Aligned_cols=19 Identities=32% Similarity=0.619 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047293 227 MMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~~ 245 (246)
+++.++++++++|++++|.
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ft 24 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFT 24 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888774
No 105
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.21 E-value=60 Score=28.12 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047293 36 PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99 (246)
Q Consensus 36 ~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~ 99 (246)
+.++......|+..+..+...+.+++..+..+..+.. + -.+-+++|+.-++...+++..+.
T Consensus 157 ~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~--~-Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEA--N-LEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999987764321 1 24557777777777777776665
No 106
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.95 E-value=1.4e+02 Score=26.01 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 171 VQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 171 v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
...-+..|..--.++.+|.+.|+.++.++|.....++.+-+.+..+-...+
T Consensus 88 ~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g 138 (273)
T KOG3065|consen 88 AEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFG 138 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 355677888889999999999999999999999999999998888765533
No 107
>PHA02650 hypothetical protein; Provisional
Probab=55.34 E-value=13 Score=25.86 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 047293 224 GQIMMILFLIALFIVLFVLV 243 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~~ 243 (246)
+.+..+.+++++++++++++
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l 64 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVAL 64 (81)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 33455666656544444433
No 108
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=55.32 E-value=34 Score=20.06 Aligned_cols=16 Identities=6% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFVL 242 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~ 242 (246)
|+++-|+.+++|++++
T Consensus 16 Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 16 WIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 109
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=54.96 E-value=11 Score=23.41 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=8.4
Q ss_pred cchhHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALF 236 (246)
Q Consensus 223 ~~~~~~i~~li~~~ 236 (246)
+++||+++|-+.++
T Consensus 3 rky~wlvvfav~~f 16 (53)
T PF10831_consen 3 RKYWWLVVFAVFVF 16 (53)
T ss_pred ceehhHHHHHHHHH
Confidence 45777776555433
No 110
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=53.07 E-value=75 Score=28.98 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.++..+|...=.+|...-..|+.+-..++.+|.. +...-+..|+..+..+..++.+++..+..
T Consensus 5 ~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~--~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 5 EELQEEITQHEQQLVIARQKLKDAEKQYEKDPDD--VNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555556677753 23566789999999999999999987753
No 111
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=52.94 E-value=30 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=16.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q 047293 220 ASAKGQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 220 ~~~~~~~~~i~~li~~~i~l~~~~~~ 245 (246)
+..--.||.+++.+.|++.++.++.+
T Consensus 17 dnplP~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 17 DNPLPRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678887777777766666554
No 112
>PHA02819 hypothetical protein; Provisional
Probab=52.51 E-value=15 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 047293 226 IMMILFLIALF 236 (246)
Q Consensus 226 ~~~i~~li~~~ 236 (246)
+..+.++++++
T Consensus 44 ~~~~~~ii~l~ 54 (71)
T PHA02819 44 FLRYYLIIGLV 54 (71)
T ss_pred hhHHHHHHHHH
Confidence 34445554433
No 113
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.03 E-value=1e+02 Score=23.45 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 160 QDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 160 qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
-...|..|...|..|..+-..++...+....+=+.|+.-++.+..........|+.+-
T Consensus 11 I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 11 IRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555542334455555555555555555555555543
No 114
>PRK11637 AmiB activator; Provisional
Probab=50.89 E-value=2e+02 Score=26.42 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
...++......|.....+....-..+..+...+...|..+..+..+....+....
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665555666666666666677777666666666555443
No 115
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=50.75 E-value=55 Score=23.06 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGV 177 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~ 177 (246)
+..-+..||.|...+..|.+-
T Consensus 28 ~~~ins~LD~Lns~LD~LE~r 48 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQR 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555444443
No 116
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.49 E-value=21 Score=25.37 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=7.2
Q ss_pred chhHHHHHHHHHHHHHH
Q 047293 224 GQIMMILFLIALFIVLF 240 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~ 240 (246)
+.||.++.++++++||+
T Consensus 34 gm~~lvI~~iFil~Vil 50 (94)
T PF05393_consen 34 GMWFLVICGIFILLVIL 50 (94)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34444444443333333
No 117
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=50.45 E-value=29 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047293 232 LIALFIVLFVL 242 (246)
Q Consensus 232 li~~~i~l~~~ 242 (246)
|+.++|.|+++
T Consensus 18 lflv~imliif 28 (43)
T PF11395_consen 18 LFLVIIMLIIF 28 (43)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 118
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=49.95 E-value=1.8e+02 Score=25.54 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIM 227 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 227 (246)
+.+.-+++|+.+...|..+..-...=...|..+-.-|+.....+ ..|......|.++++.++.+|.|-
T Consensus 7 l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~wG 74 (304)
T PF02646_consen 7 LLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNWG 74 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhHH
Confidence 44455566666666665555444433344444444444443333 566777778888888666777763
No 119
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=49.81 E-value=6.5 Score=37.63 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=44.3
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENS-ASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRD 70 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l-~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~ 70 (246)
+|......+...+..+...+++-+.. ..++..+..++.+|.+.+..+...|.++-.-|+.++++
T Consensus 256 sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 256 SFNKAIGNIQLGFTTTASALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 57778888888888888777777663 23345567777777777666666666666666666654
No 120
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=1.6e+02 Score=24.71 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhhHHh
Q 047293 185 LVAQENIIDELGTEMDS 201 (246)
Q Consensus 185 l~~Q~~lLd~i~~~v~~ 201 (246)
|-.=++.|+.+...-..
T Consensus 157 vl~rg~~l~~l~~~~s~ 173 (216)
T KOG0862|consen 157 VLQRGEVLNALSSMASE 173 (216)
T ss_pred HHhhchHHHhhhhhhhc
Confidence 33334445444443333
No 121
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.42 E-value=70 Score=22.73 Aligned_cols=57 Identities=11% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 5 QDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVAS 68 (246)
Q Consensus 5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~ 68 (246)
.++...+...+...|..+...+.++-... ...+++...++.+..+-..|.+.+...+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~-------~~~~~~e~ei~~l~~dr~rLa~eLD~~~ 59 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERD-------RKRDELEEEIQRLDADRSRLAQELDQAE 59 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhHHHHHHHHHhhHHHHHHHHHhHH
Confidence 34566677788888888888877765421 2224556666666666666666665433
No 122
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.91 E-value=2.5e+02 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHH
Q 047293 41 HLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTS 89 (246)
Q Consensus 41 ~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~ 89 (246)
.....+...+..+......|...+..+.. .|.++..|+...+.+-.
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~---sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQ---SYTLNESELESVRQLEK 355 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccCchhHHHHHHHHH
Confidence 34444555555555555555555555542 46777887777666533
No 123
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=48.34 E-value=20 Score=20.91 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLF 240 (246)
Q Consensus 227 ~~i~~li~~~i~l~ 240 (246)
||..+++++++-|+
T Consensus 25 ~cfal~vv~lvslw 38 (40)
T PF13124_consen 25 FCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666554
No 124
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=48.30 E-value=96 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047293 173 RIGGVGLTIHDELVAQENIIDELG 196 (246)
Q Consensus 173 ~l~~~~~~i~~el~~Q~~lLd~i~ 196 (246)
.|...-..|+.|++.-..-++.++
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~ 32 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLE 32 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445544444444333
No 125
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.95 E-value=1.4e+02 Score=23.84 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHh
Q 047293 181 IHDELVAQENIIDELGTEMDSTS 203 (246)
Q Consensus 181 i~~el~~Q~~lLd~i~~~v~~~~ 203 (246)
+.+|...+..-+.++++.++.-=
T Consensus 118 ~r~e~~~~~~ki~e~~~ki~~ei 140 (177)
T PF07798_consen 118 IREEQAKQELKIQELNNKIDTEI 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555554443
No 126
>PHA02849 putative transmembrane protein; Provisional
Probab=47.50 E-value=28 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 047293 223 KGQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~~~~ 245 (246)
-+...+|.+++++++++++++++
T Consensus 14 ~g~v~vi~v~v~vI~i~~flLly 36 (82)
T PHA02849 14 AGAVTVILVFVLVISFLAFMLLY 36 (82)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 127
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=47.47 E-value=46 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVA 67 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~ 67 (246)
++.+..++.+...|+-|.+....+
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~rv 274 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCATRV 274 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433
No 128
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.31 E-value=1.4e+02 Score=23.56 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEK 83 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~ 83 (246)
++...+..++..+..|+.-+..+... ...++++|+.+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~--~~~vs~ee~~~ 149 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG--SKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Confidence 44444455555555555554444431 23467776553
No 129
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=47.18 E-value=1.1e+02 Score=22.38 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHH
Q 047293 161 DEELDELSASVQ--RIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFV 209 (246)
Q Consensus 161 D~~l~~l~~~v~--~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~ 209 (246)
++.|..++..+. .+.+.-..+.+.|+.|++-+..+...++.....++.-
T Consensus 36 ~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I 86 (102)
T PF01519_consen 36 NQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLI 86 (102)
T ss_dssp TTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554 2222223333455555555555555555444444333
No 130
>PRK00523 hypothetical protein; Provisional
Probab=46.91 E-value=28 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 047293 226 IMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~~~~~ 245 (246)
|++|++.|+.+++=++..|+
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 131
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.55 E-value=1.6e+02 Score=23.84 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 163 ELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 163 ~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
-+-.|+..|.++.+.+.++-+.+..|-+-=-.+..+|.....++.+.-.++.++++
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555666666666665555555544
No 132
>PRK09039 hypothetical protein; Validated
Probab=45.44 E-value=2.3e+02 Score=25.44 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHH-HHHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKK-VAMVMK 218 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~-l~~~~~ 218 (246)
..++....+...++..|..-|..|+..-..+..+++.......+....++....+|+.+..+ ...+-+
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888899999999999888888888888888888888888888888888643 444433
No 133
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=44.96 E-value=21 Score=23.94 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 047293 230 LFLIALFIVLFVLV 243 (246)
Q Consensus 230 ~~li~~~i~l~~~~ 243 (246)
++|+.|+++|-+++
T Consensus 21 vLLLsIl~~lt~~a 34 (66)
T PF13179_consen 21 VLLLSILAFLTYWA 34 (66)
T ss_pred HHHHHHHHHHHHHH
Confidence 33434444444433
No 134
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=44.21 E-value=44 Score=23.20 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHHHHhhhHHhHhHHHHHHHHH
Q 047293 190 NIIDELGTEMDSTSNRLDFVQKK 212 (246)
Q Consensus 190 ~lLd~i~~~v~~~~~~l~~~~~~ 212 (246)
+.|++|+.+....+=++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 48999999998888877766655
No 135
>PRK01844 hypothetical protein; Provisional
Probab=43.86 E-value=34 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.210 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 047293 226 IMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~~~~ 244 (246)
|+.|++.|+.+++=++..|
T Consensus 4 ~~~I~l~I~~li~G~~~Gf 22 (72)
T PRK01844 4 WLGILVGVVALVAGVALGF 22 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 136
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=43.52 E-value=28 Score=27.21 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFVLVF 244 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~ 244 (246)
++|+++|+.+|++++.++
T Consensus 119 ~~i~~~i~g~ll~i~~gi 136 (145)
T PF10661_consen 119 PTILLSIGGILLAICGGI 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344443433333333333
No 137
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=42.80 E-value=1.6e+02 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=20.6
Q ss_pred ChhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047293 142 NDDFIQSESDRQLLLVKQQDEELDELSA 169 (246)
Q Consensus 142 n~~~~~~~~~~Q~~~~~~qD~~l~~l~~ 169 (246)
|+.+++....-|+.++...-++|+.+..
T Consensus 33 NerLlees~kAQq~mL~~FkeelE~ias 60 (144)
T PRK13895 33 NDRLMQDSAKAQQEMLDQFKEELESIAS 60 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566676677888888888887776654
No 138
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.60 E-value=2.1e+02 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=7.9
Q ss_pred chHhHHHHHHHHHHHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQST 25 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~ 25 (246)
.|-.++.++....-.++..
T Consensus 253 efak~~G~lvna~m~lr~~ 271 (320)
T TIGR01834 253 ENAKVHGKFINALMRLRIQ 271 (320)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 139
>PF15106 TMEM156: TMEM156 protein family
Probab=42.23 E-value=29 Score=28.83 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 047293 237 IVLFVLVF 244 (246)
Q Consensus 237 i~l~~~~~ 244 (246)
+|+++++|
T Consensus 187 iflii~iI 194 (226)
T PF15106_consen 187 IFLIILII 194 (226)
T ss_pred HHHHHHHH
Confidence 33333333
No 140
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.12 E-value=1.1e+02 Score=27.06 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHhHhHHHHHHHHHHHHH---HHHccccchhHHHHHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIID---ELGTEMDSTSNRLDFVQKKVAMV---MKKASAKGQIMMILFL 232 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd---~i~~~v~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~i~~l 232 (246)
|.-.-+..+.+-+.....+=..|-+=...|..+-. .=+.++|.-.+....++.-++.. +++...+....-.+++
T Consensus 219 En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~l 298 (316)
T KOG3894|consen 219 ENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLL 298 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHH
Confidence 44333344444444444444444433344443322 23556666666666666655554 4454444444445555
Q ss_pred HHHHHHHHHHHHh
Q 047293 233 IALFIVLFVLVFL 245 (246)
Q Consensus 233 i~~~i~l~~~~~~ 245 (246)
+.++|.=++++|+
T Consensus 299 f~llvlsf~lLFl 311 (316)
T KOG3894|consen 299 FFLLVLSFSLLFL 311 (316)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555666664
No 141
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=42.10 E-value=93 Score=21.29 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 187 AQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 187 ~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
.|..+|.+|=.+|++...-+...++.+..+..++.
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~N~ 42 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINRANK 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36666666666666666666666666665555443
No 142
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=41.94 E-value=2.2e+02 Score=26.37 Aligned_cols=91 Identities=14% Similarity=0.241 Sum_probs=61.4
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHH----
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIEL---- 81 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El---- 81 (246)
|.-..-+++++..+..++.+.-.|.- +|.+ ..-..+.+.|..+..+|+.|+..+... .|-|.++=..|+
T Consensus 220 d~lltkVDDLQD~vE~LRkDV~~RgV-Rp~~----~qLe~v~kdi~~a~keL~~m~~~i~~e--KP~WkKiWE~EL~~Vc 292 (426)
T smart00806 220 DSLLTKVDDLQDIIEALRKDVAQRGV-RPSK----KQLETVQKELETARKELKKMEEYIDIE--KPIWKKIWEAELDKVC 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHH
Confidence 44455677777777777777666643 3332 333467788889999999999998853 344544444444
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHH
Q 047293 82 ------EKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 82 ------~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.-..+++.+|+..+......|.
T Consensus 293 EEqqfL~lQedL~~DL~dDL~ka~eTf~ 320 (426)
T smart00806 293 EEQQFLTLQEDLIADLKEDLEKAEETFD 320 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888877775
No 143
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.85 E-value=2.9e+02 Score=25.67 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIGVASRDPS--WYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~--k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
......+......|-.+++||+..+..+..+.- +...++..+..=..-+..+...+..|+..+.
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~ 270 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIK 270 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666777777777766554320 1234444444444444555555555554443
No 144
>PHA03386 P10 fibrous body protein; Provisional
Probab=41.74 E-value=1.1e+02 Score=22.01 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHH
Q 047293 154 LLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 154 ~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l 206 (246)
..-++.-|..++.|...|..++.- +.-++.|...|+.++..|..-++-|
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iL 59 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSIL 59 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhc
Confidence 344677788888888888888765 4458888888888888887766544
No 145
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.31 E-value=4.6e+02 Score=27.79 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhHhHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGT-EMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~-~v~~~~~~l~~~~~~l~~~~ 217 (246)
-..+++..+.+-...+..++....++-.+++.=.+..+.+-. .++ ...+++..+..+..+-
T Consensus 971 k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 971 KAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777766 444 6667776666666553
No 146
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=41.29 E-value=27 Score=25.25 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=6.3
Q ss_pred cccchhHHHHH
Q 047293 221 SAKGQIMMILF 231 (246)
Q Consensus 221 ~~~~~~~~i~~ 231 (246)
+.+.+|..|+.
T Consensus 19 r~~~~w~vi~~ 29 (98)
T COG5416 19 RMKGQWTVIIV 29 (98)
T ss_pred hccceeeHHHH
Confidence 34566666654
No 147
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.26 E-value=2.7e+02 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=10.6
Q ss_pred CCCCc--hHhHHHHHHHHHH
Q 047293 3 SAQDP--FYIVKEEIQDSIN 20 (246)
Q Consensus 3 ~~~Dp--f~~~~~ev~~~l~ 20 (246)
|..|| |-.+++.|.-.|+
T Consensus 189 s~vd~~eWklEvERV~PqLK 208 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQLK 208 (359)
T ss_pred ccCCHHHHHHHHHHHhhhhe
Confidence 34444 6666666666664
No 148
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=41.11 E-value=38 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047293 226 IMMILFLIALFIVLFVLV 243 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~~~ 243 (246)
|.++++++++.++|+.++
T Consensus 6 wiili~iv~~Cl~lyl~a 23 (47)
T PRK10299 6 WVVLVVVVLACLLLWAQV 23 (47)
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 444444444444454444
No 149
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=40.68 E-value=99 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 39 QVHLKKELLAGCESIEWQVDELDKAIGVAS 68 (246)
Q Consensus 39 ~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~ 68 (246)
+...+.+|-..+......|++|++++..+.
T Consensus 19 Fq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 19 FQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777888999999999999999887543
No 150
>PRK04654 sec-independent translocase; Provisional
Probab=40.40 E-value=2.2e+02 Score=23.79 Aligned_cols=20 Identities=5% Similarity=0.164 Sum_probs=7.7
Q ss_pred HhhhHHhHhHHHHHHHHHHH
Q 047293 195 LGTEMDSTSNRLDFVQKKVA 214 (246)
Q Consensus 195 i~~~v~~~~~~l~~~~~~l~ 214 (246)
+...+..+...++.+.+-|+
T Consensus 73 ~~~~lk~~~~el~q~a~~~~ 92 (214)
T PRK04654 73 AEDQLRNTQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333334444443333333
No 151
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.22 E-value=5e+02 Score=27.88 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH--hHHHHHHHHHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDST--SNRLDFVQKKVAMVMK 218 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~--~~~l~~~~~~l~~~~~ 218 (246)
..++.|..-+..+..--..+..++..+...-.++.++++.. ...+.....++..+-.
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~ 1042 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLK 1042 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555555 4444444444444433
No 152
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.08 E-value=2.5e+02 Score=24.37 Aligned_cols=23 Identities=4% Similarity=0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047293 81 LEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 81 l~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
+......+..++.++..+...++
T Consensus 137 ~~~~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544
No 153
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=39.97 E-value=1.3e+02 Score=21.23 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 164 LDELSASVQRIGGVGLTIHDELVAQENIIDEL 195 (246)
Q Consensus 164 l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i 195 (246)
.+.+...+...+.-+..-.+|...=|.=||++
T Consensus 40 vdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 40 IARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444444444444444444444444444433
No 154
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=39.12 E-value=16 Score=29.39 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047293 235 LFIVLFVL 242 (246)
Q Consensus 235 ~~i~l~~~ 242 (246)
|+||++|+
T Consensus 89 i~Iv~~Iv 96 (179)
T PF13908_consen 89 IAIVVLIV 96 (179)
T ss_pred HHHHHhHh
Confidence 33333333
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.00 E-value=3.4e+02 Score=25.66 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 43 KKELLAGCESIEWQVDELDKAIGVASRD----PSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 43 ~~ei~~~i~~l~~~l~~L~~~l~~~~~~----~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
...+++.-+.+..+...++.++..++.- |++..--..|+......+..|++..+++...+.
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555555555555555554421 111111134555555566666666666665554
No 156
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.49 E-value=73 Score=17.73 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH
Q 047293 55 WQVDELDKAIGVASRDPSWYGIDDIELEKRRRWT 88 (246)
Q Consensus 55 ~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v 88 (246)
..|..|+..+. +..||++|..+++..+
T Consensus 3 ~~L~~L~~l~~-------~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYD-------KGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHH-------cCCCCHHHHHHHHHHH
Confidence 34556666554 4679999998887754
No 157
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.11 E-value=1.1e+02 Score=29.76 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=42.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENSASD----PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l~~~----~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
.|+..+..|.+.+..+...++.....-.. -......+..+-.....+..+.+.++.--..+..-..+|.+++.|..
T Consensus 35 ~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~ 114 (618)
T PF06419_consen 35 EFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEED 114 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 36777777888888777777665542110 00112333344444444444444444433333344457889988865
Q ss_pred HHH
Q 047293 83 KRR 85 (246)
Q Consensus 83 ~R~ 85 (246)
.=.
T Consensus 115 ~L~ 117 (618)
T PF06419_consen 115 ALT 117 (618)
T ss_pred HHh
Confidence 433
No 158
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=37.38 E-value=1.3e+02 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHhhhHHhHhHHHHHHHHHHHHHHHHcccc
Q 047293 193 DELGTEMDSTSNRLDFVQKKVAMVMKKASAK 223 (246)
Q Consensus 193 d~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~ 223 (246)
..+....|....+++.++..+...+-+.=++
T Consensus 18 ne~~kRLdeieekvef~~~Ev~Qr~GkkiGR 48 (75)
T COG4064 18 NEIHKRLDEIEEKVEFVNGEVYQRIGKKIGR 48 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3455566677777777777777766654444
No 159
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.33 E-value=1.2e+02 Score=19.74 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 163 ELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 163 ~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
.++.|+.-|+.|+.--..|..++. .+-.++..+...-.+|+.||....
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 355555555555554444444442 333344445555555555555443
No 160
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=37.30 E-value=1.1e+02 Score=22.56 Aligned_cols=14 Identities=0% Similarity=0.408 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHc
Q 047293 207 DFVQKKVAMVMKKA 220 (246)
Q Consensus 207 ~~~~~~l~~~~~~~ 220 (246)
+.|++||-.+++.+
T Consensus 15 E~AMrRLl~~LRqs 28 (103)
T PF11027_consen 15 EMAMRRLLNLLRQS 28 (103)
T ss_pred HHHHHHHHHHHHHh
Confidence 46888888888864
No 161
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=37.21 E-value=2.2e+02 Score=22.89 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHH
Q 047293 206 LDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 206 l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~ 244 (246)
+.....++.+...+...+..|+.++++++=+.+++-+.|
T Consensus 76 le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf 114 (180)
T PF04678_consen 76 LEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTF 114 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444455555555544444444433
No 162
>PHA03395 p10 fibrous body protein; Provisional
Probab=37.20 E-value=1.5e+02 Score=21.04 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHhHh
Q 047293 154 LLLVKQQDEELDELSASVQRIGGVGL---TIHDELVAQENIIDELGTEMDSTS 203 (246)
Q Consensus 154 ~~~~~~qD~~l~~l~~~v~~l~~~~~---~i~~el~~Q~~lLd~i~~~v~~~~ 203 (246)
+.-++.-|..++.|...|..++.-.- .|++-++.|...|+.+...++.-+
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~ 62 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNIT 62 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34567778888888888888876553 566677778888877777766543
No 163
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=37.19 E-value=25 Score=20.53 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=9.3
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 047293 224 GQIMMILFLIALFIVLFVLV 243 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~~ 243 (246)
+.+-+|..|++.++.+++++
T Consensus 19 gfykligclvvmfigiivmi 38 (41)
T PF13121_consen 19 GFYKLIGCLVVMFIGIIVMI 38 (41)
T ss_pred hHHHHHHHHHHHHHHHHheE
Confidence 33344555555555444443
No 164
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=36.92 E-value=1.8e+02 Score=21.84 Aligned_cols=44 Identities=5% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 168 SASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 168 ~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
.+.+..++++...|..++ +.++.+---++.++..++-.|.+++.
T Consensus 3 Kdt~~kmkeL~e~~~~D~-------~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADA-------EKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHccchHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554 34688888889999999988888765
No 165
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=36.88 E-value=43 Score=24.38 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 047293 227 MMILFLIALFI 237 (246)
Q Consensus 227 ~~i~~li~~~i 237 (246)
+.|++.+++++
T Consensus 52 ~GIli~f~i~f 62 (103)
T PF06422_consen 52 FGILIAFWIFF 62 (103)
T ss_pred HHHHHHHHHHH
Confidence 44443333333
No 166
>PHA03386 P10 fibrous body protein; Provisional
Probab=36.61 E-value=1.6e+02 Score=21.15 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.|+..++.+..++..|+..+..++.|..+ +..--..+.++..++.++.+.++.
T Consensus 9 ~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~-------LDa~~~qL~~l~tkV~~Iq~iLn~ 61 (94)
T PHA03386 9 QILDAVQEVDTKVDALQTQLNGLEEDSQP-------LDGLPAQLTELDTKVSDIQSILTG 61 (94)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcchh-------hhhHHHHHHHHHHHHHHHHHhcCc
Confidence 67888899999999999999988876322 444566778888899988888764
No 167
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=36.18 E-value=1.6e+02 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 78 DIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 78 ~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
..++++|-..+..+..-+..++....-
T Consensus 20 a~~~~~R~~~L~~l~~~L~~L~~EI~y 46 (170)
T PF09548_consen 20 ARRLKRRVRQLRELRRALQLLETEIRY 46 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776653
No 168
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=36.00 E-value=2.7e+02 Score=23.81 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 74 YGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 74 ~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
..++..++...+..+..+..+++..+..+.
T Consensus 97 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~ 126 (322)
T TIGR01730 97 NAVSQADLDDAKAAVEAAQADLEAAKASLA 126 (322)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888877777777765555443
No 169
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=35.92 E-value=52 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFVLVF 244 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~ 244 (246)
|+.++++++++.+++++|
T Consensus 14 ~~l~~~~~~Figiv~wa~ 31 (48)
T cd01324 14 WGLLYLALFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444445555666666554
No 170
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=35.89 E-value=1.6e+02 Score=20.89 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 165 DELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 165 ~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
+.+..-|+.+..--..+..+++....=...++..-..+..+|..++..+.-++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555556666666666666666666666666666666665554
No 171
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.78 E-value=1.4e+02 Score=20.14 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=36.4
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
+.-.....+++..|..+...+....--..+.+ ......+...++....+++.|++.+.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p--~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLP--PSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566677777777777666544222221 25556778888888888888877654
No 172
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=35.65 E-value=2.2e+02 Score=22.39 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC--C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRD--P-SWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~--~-~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
..+.....++...|..|...-..++.+ + ...++|..++.....|+..|...+..-.+...
T Consensus 26 ~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~ 88 (148)
T COG2882 26 SKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLS 88 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665555555443 1 23478999999999999999999998887664
No 173
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=35.62 E-value=6.2 Score=30.97 Aligned_cols=7 Identities=14% Similarity=0.562 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047293 227 MMILFLI 233 (246)
Q Consensus 227 ~~i~~li 233 (246)
++|++++
T Consensus 137 ~Li~~~v 143 (159)
T PF06789_consen 137 ALIVLAV 143 (159)
T ss_pred HHHHHHH
Confidence 3333333
No 174
>PHA03054 IMV membrane protein; Provisional
Probab=35.36 E-value=61 Score=22.00 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~ 242 (246)
++.+..+.++++++++++++
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILL 62 (72)
T ss_pred cCCchHHHHHHHHHHHHHHH
Confidence 33455666666544444333
No 175
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.31 E-value=16 Score=35.39 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 047293 222 AKGQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 222 ~~~~~~~i~~li~~~i~l~~~~~~ 245 (246)
.+-.|+++.+++-+++|++|++|+
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil 289 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIIL 289 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHH
Confidence 344566676666555555555544
No 176
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.28 E-value=5.4e+02 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=9.0
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 047293 8 FYIVKEEIQDSINKLQST 25 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~ 25 (246)
|....+|+...+..+...
T Consensus 228 YdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEED 245 (1200)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 177
>PHA02675 ORF104 fusion protein; Provisional
Probab=35.17 E-value=1.6e+02 Score=20.72 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHH
Q 047293 169 ASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKK 212 (246)
Q Consensus 169 ~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~ 212 (246)
.-+.+|-..+..+-+.-..-++.|++++.+.+.....|=.-.++
T Consensus 37 ~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KK 80 (90)
T PHA02675 37 ERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTK 80 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556666666666677777777777777655544444443
No 178
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=35.07 E-value=4.1e+02 Score=25.38 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.....+++..+.++-.+|.++..-....+.+. ...|+. |-..|..-|..++.++..+.+.+.
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~-d~kIdt-E~k~R~~eV~~vRqELa~lLssvQ 472 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDS-DTKIDT-EGKAREREVGAVRQELATLLSSVQ 472 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-hhhccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666655555444332 234553 346677777777777777665544
No 179
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.72 E-value=3.7e+02 Score=24.76 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHhHhHHHHHHH
Q 047293 152 RQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQ-ENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 152 ~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q-~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
++..+.++-.+.++.--.-|..||+--..|-+-++.| .+-.-+|.+.|+..+.+|.+--
T Consensus 259 R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333344444455788888877787777766 4678889999999999887765
No 180
>PHA03395 p10 fibrous body protein; Provisional
Probab=34.38 E-value=1.7e+02 Score=20.78 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSW-YGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k-~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.||..|+.+..+++.|+..+..++.|-.. ..|+.. +...-..+.++...++.+.+.++
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~k-Ldaq~~~Ltti~tkv~~I~diLn 66 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEK-LDAQSASLDTISSAVDNITDILN 66 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHH-HHhHHHHHHHHHHHHHHHHHccC
Confidence 57888888899999999888887754211 122222 55566666777777777766655
No 181
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.36 E-value=1.5e+02 Score=20.22 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDF 208 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~ 208 (246)
+-++-|.+|+..+...-..-..+++-|.+|...++.+...++....++..
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777777888887777776666665555543
No 182
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=34.25 E-value=41 Score=23.14 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 047293 225 QIMMILFLIALFIVLFV 241 (246)
Q Consensus 225 ~~~~i~~li~~~i~l~~ 241 (246)
-++++++|++++++|+|
T Consensus 30 ~faFV~~L~~fL~~liV 46 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIV 46 (81)
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34556666665555554
No 183
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=34.08 E-value=2.2e+02 Score=21.88 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH-H
Q 047293 13 EEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTST-A 91 (246)
Q Consensus 13 ~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~-l 91 (246)
.++...+...+..+.+.-. ..++++....-+.++..+..+...++.... .|....-.......=..-... +
T Consensus 55 ~~~~~~l~~~r~~l~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 126 (171)
T PF02203_consen 55 ADASSNLLQARLALNRALL-QGDSPDAAELLARAEQNLEQAEQAFDAFKA-------LPHASPEERALADELEASFDAYL 126 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCCTSCCHHHHHHHHHHHHHHHHHHHHHHC-------S---GTGGHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHc-------cCCCCcchHHHHHHHHHHHHHHH
Confidence 3444444455544444222 122222344444555555555555554433 332111122222223333334 4
Q ss_pred HHHHHHHHHHHHcC
Q 047293 92 RTQVSSMKKAVLSG 105 (246)
Q Consensus 92 ~~~~~~l~~~~~~~ 105 (246)
...+..+...+...
T Consensus 127 ~~~l~~~~~al~~~ 140 (171)
T PF02203_consen 127 QQALDPLLAALRAG 140 (171)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHCC
Confidence 45556666655553
No 184
>PRK04406 hypothetical protein; Provisional
Probab=33.95 E-value=1.6e+02 Score=20.23 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 181 IHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 181 i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
+-.-+..|...++.++.-|..-+..+..-.++++.+
T Consensus 16 LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 16 LECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555554444444444444
No 185
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.75 E-value=3.2e+02 Score=25.46 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHH--------
Q 047293 10 IVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIEL-------- 81 (246)
Q Consensus 10 ~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El-------- 81 (246)
.-+++++..+..++.+.-.|.- .|.. .....+...|..+..+|..|+..+....- .|.++=..|+
T Consensus 220 ~kVdDLQD~VE~LRkDV~~Rgv-Rp~~----~qle~v~kdi~~a~~~L~~m~~~i~~~kp--~WkKiWE~EL~~V~eEQq 292 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQRGV-RPSP----KQLETVAKDISRASKELKKMKEYIKTEKP--IWKKIWESELQKVCEEQQ 292 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-cCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHH
Confidence 3456666666677766555543 3332 33346667777777788888777775542 2222333443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Q 047293 82 --EKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 82 --~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.-..+++.+|+..++.+...|.
T Consensus 293 fL~~QedL~~DL~eDl~k~~etf~ 316 (424)
T PF03915_consen 293 FLKLQEDLLSDLKEDLKKASETFA 316 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888887777665
No 186
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=33.60 E-value=41 Score=22.00 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 047293 225 QIMMILFLIA 234 (246)
Q Consensus 225 ~~~~i~~li~ 234 (246)
+||+|+++.+
T Consensus 7 YWWiiLl~lv 16 (63)
T PF13980_consen 7 YWWIILLILV 16 (63)
T ss_pred HHHHHHHHHH
Confidence 4566544433
No 187
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.38 E-value=3.5e+02 Score=24.10 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 047293 41 HLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIE-LEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 41 ~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~E-l~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
....-++..+..++.++...+..+....... ..+++.+ ...--..+..|+.++.++...+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~--~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN--KVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666777777776666554321 1234433 33344566677777777766654
No 188
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=32.95 E-value=1.2e+02 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Q 047293 208 FVQKKVAMVMKKASAKGQIMMILFLIALFIVL 239 (246)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l 239 (246)
.+..+++.+.+.-+.+....+++++++++.++
T Consensus 10 ~~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l 41 (85)
T PF13150_consen 10 RADDRLRRYCGRLSPKQRLRVVLVMLVLFAAL 41 (85)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 44556666666656555555555444444433
No 189
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=32.94 E-value=55 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=11.8
Q ss_pred HHHHHHHccccchhHHHHHHHHHHHHHHHHH
Q 047293 213 VAMVMKKASAKGQIMMILFLIALFIVLFVLV 243 (246)
Q Consensus 213 l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~ 243 (246)
+.++.+.. +..||++.++.++.++++++
T Consensus 33 ~~~~~r~r---~~~~~va~~~~~l~v~~~~~ 60 (239)
T COG3736 33 VIKLERSR---RLAWRVAILFTLLAVAAVIA 60 (239)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444432 33444444444444443333
No 190
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=32.81 E-value=2.2e+02 Score=21.63 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 153 QLLLVKQQDEELDELSASVQRIG-------GVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 153 Q~~~~~~qD~~l~~l~~~v~~l~-------~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
.++++.+....||.+.+.+..|- +++..+-.-..+||.+|.+++..++...+-+..---++..
T Consensus 43 nq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkits 112 (177)
T PF12495_consen 43 NQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITS 112 (177)
T ss_pred hHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556666666776666665543 3334444445689999999999888877765544444333
No 191
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.71 E-value=3.5e+02 Score=23.90 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Q 047293 11 VKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTST 90 (246)
Q Consensus 11 ~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~ 90 (246)
-..+++..+..++..|.+---. +..+..-...+...+..|...|.++++.+..+.+.-.. + ..|+.+-+..+..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~---naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e-K--~~elEr~K~~~d~ 151 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVS---NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE-K--IRELERQKRAHDS 151 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
Confidence 4456677777777666543211 00111122234444455555555555555433321100 1 3567888888888
Q ss_pred HHHHHHHHHHHHH
Q 047293 91 ARTQVSSMKKAVL 103 (246)
Q Consensus 91 l~~~~~~l~~~~~ 103 (246)
|+.++..++..+.
T Consensus 152 L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 152 LREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888775
No 192
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.25 E-value=4.7e+02 Score=25.18 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 047293 39 QVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWT---STARTQVSSMKKAVL 103 (246)
Q Consensus 39 ~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v---~~l~~~~~~l~~~~~ 103 (246)
.......+...|..+......|...+..+.. +|.++..|+..-+.+- ..+...+..+...+.
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~---sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~ 368 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQ---SYTLNHNELEIVRELEKQLKELEKRYEDLEERIE 368 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555666665555543 4778877776554433 344444444444443
No 193
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.92 E-value=4.7e+02 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHh---HHHHHHHHHHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTS---NRLDFVQKKVAMVMKK 219 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~---~~l~~~~~~l~~~~~~ 219 (246)
+.|+.+...+..++.+..--+..+++-...++.+...++... ..+.....++.++.+.
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~ 361 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEE 361 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 346667777777777666666666666666666665555433 2455555555555543
No 194
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=31.87 E-value=79 Score=17.79 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 229 ILFLIALFIVLFVLVF 244 (246)
Q Consensus 229 i~~li~~~i~l~~~~~ 244 (246)
+++|+..+.++++.+|
T Consensus 7 tfll~~tlgiiFFAIf 22 (31)
T PRK11875 7 ILILTLALVTLFFAIA 22 (31)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444444444
No 195
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=31.75 E-value=98 Score=17.20 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 229 ILFLIALFIVLFVLVF 244 (246)
Q Consensus 229 i~~li~~~i~l~~~~~ 244 (246)
+++|+..+.+|++.+|
T Consensus 7 ~~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 7 TFLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3444444445555444
No 196
>PHA02047 phage lambda Rz1-like protein
Probab=31.63 E-value=2e+02 Score=20.82 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccc
Q 047293 180 TIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKG 224 (246)
Q Consensus 180 ~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~ 224 (246)
+....++.=+.-+..+..+|+....+-+..++.++..++++.+|.
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~Wa 82 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWA 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 333344444455566667777777778888888889999877763
No 197
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.62 E-value=73 Score=19.66 Aligned_cols=16 Identities=13% Similarity=0.553 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 229 ILFLIALFIVLFVLVF 244 (246)
Q Consensus 229 i~~li~~~i~l~~~~~ 244 (246)
.++++++++.++++++
T Consensus 15 ~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555443
No 198
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.59 E-value=2e+02 Score=20.68 Aligned_cols=59 Identities=10% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 158 KQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 158 ~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
++-...|..|...|..|..+-..++...+.-..+=+.++..++.+..........++.+
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655555554443212333445555555555555555555544
No 199
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=31.58 E-value=2.8e+02 Score=22.38 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 160 QDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 160 qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
..+..+.+...+..|......+..++......|.++.+.+..-...+......+..++...+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 34567888888999999999999999999999999999999998888888888888887654
No 200
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=31.49 E-value=87 Score=27.22 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc--ccchhHHHH
Q 047293 165 DELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS--AKGQIMMIL 230 (246)
Q Consensus 165 ~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~--~~~~~~~i~ 230 (246)
+.|+.++..+-.+-..|+-.+..=..|++-=+.+.+...++|+.....+.++.+.=+ .+..++|++
T Consensus 164 ~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVc 231 (323)
T KOG2825|consen 164 TTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVC 231 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 456667777777777777777666667765567888888999999998888887544 444454443
No 201
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.27 E-value=3.8e+02 Score=23.90 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcccc
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAK 223 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~ 223 (246)
+....|......+..+..--..+..+.+.-..-...+...+..+..++.+|.+=+.-+-.....|
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 33444555555555555555555556655555577888888999999999988777776654444
No 202
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.81 E-value=2.7e+02 Score=21.94 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 42 LKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 42 ~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
...+++..+..+...+..|+..+..+... +|..|+. ..+..|..++..+...+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~---~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE-----PTNEELR---EEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766643 4667654 4556777788877777654
No 203
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=30.33 E-value=3.8e+02 Score=23.60 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.+-...+.+...+..+...|..++.. ...++...=+.+..+-.++.++...+..
T Consensus 131 ~vl~~a~~l~~~~n~~~~~L~~~~~~------~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 131 AVLESAQALANSFNQTSNELQDLRKG------INAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433321 2355566666666666666666665543
No 204
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=30.24 E-value=2.1e+02 Score=20.56 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 172 QRIGGVGLTIHDELVA-QENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 172 ~~l~~~~~~i~~el~~-Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
..+..-+..+..-|+. ...||++|+..-......|......+..-+....
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544543 3578888888877777777777777776666543
No 205
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.23 E-value=51 Score=28.79 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCC-CCCHHHHH
Q 047293 53 IEWQVDELDKAIGVASRDPSWY-GIDDIELE 82 (246)
Q Consensus 53 l~~~l~~L~~~l~~~~~~~~k~-~is~~El~ 82 (246)
-....+++++.+. +++.+. .--..|++
T Consensus 78 T~~~f~e~~e~~~---k~~~K~k~~~d~e~~ 105 (295)
T TIGR01478 78 THDPYEQLQELVE---KNRTKSTGGNGAEPM 105 (295)
T ss_pred hcchHHHHHHHHH---hcCCcccccCCcchh
Confidence 3344566666544 555443 22344444
No 206
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.83 E-value=2.6e+02 Score=21.50 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047293 12 KEEIQDSINKLQSTFHQWEN 31 (246)
Q Consensus 12 ~~ev~~~l~~l~~~~~~~~~ 31 (246)
..++..-++-+..++..++.
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r 49 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDR 49 (151)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 56666667777777766654
No 207
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.74 E-value=79 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 047293 226 IMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~~~~ 244 (246)
|..|+++++.+++-++..|
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344333333333333333
No 208
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.65 E-value=1.6e+02 Score=28.56 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=42.9
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENSAS----DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l~~----~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
.|...++++...+..+...+.+....-. .-......+..+-.....++.+.+.++.-.+++.....+|.++.+|+.
T Consensus 68 e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~ 147 (655)
T KOG3758|consen 68 EFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELD 147 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 4677777888877777776665443100 000011223333444444444444454444444444457889998876
Q ss_pred HHHH
Q 047293 83 KRRR 86 (246)
Q Consensus 83 ~R~~ 86 (246)
-=+.
T Consensus 148 ~L~~ 151 (655)
T KOG3758|consen 148 LLTE 151 (655)
T ss_pred HHhc
Confidence 5544
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.62 E-value=3e+02 Score=22.23 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
..+.+....|..+...+..|..-..+...++.+.+..+..+.+.+...+-.+..+..++.++-.-+.
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777889999999999999999999999999999999999999999999988888888866543
No 210
>PRK15396 murein lipoprotein; Provisional
Probab=29.39 E-value=2e+02 Score=20.00 Aligned_cols=15 Identities=0% Similarity=0.018 Sum_probs=6.3
Q ss_pred HhHHHHHHHHHHHHH
Q 047293 202 TSNRLDFVQKKVAMV 216 (246)
Q Consensus 202 ~~~~l~~~~~~l~~~ 216 (246)
+...-.+++.|+...
T Consensus 58 a~~eA~raN~RlDn~ 72 (78)
T PRK15396 58 AKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 211
>PTZ00370 STEVOR; Provisional
Probab=29.30 E-value=54 Score=28.68 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHccCCCC
Q 047293 53 IEWQVDELDKAIGVASRDPSW 73 (246)
Q Consensus 53 l~~~l~~L~~~l~~~~~~~~k 73 (246)
-....+++++.+. +++.+
T Consensus 77 T~~~f~e~~e~~~---k~~~K 94 (296)
T PTZ00370 77 THDPYEQLKEVVE---KNGTK 94 (296)
T ss_pred hcchHHHHHHHHH---hcCCc
Confidence 3345666666544 55544
No 212
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.30 E-value=2.6e+02 Score=21.32 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 5 QDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
.|-+|.=+..+.+....+...++.-.. .+......+...|..+...+++..+...
T Consensus 31 sD~M~vTrr~m~~A~~~v~kql~~vs~------~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 31 SDLMFVTRRSMSDAVASVSKQLEQVSE------SLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344455555555555555444433322 2344444555555555555555544443
No 213
>PHA03049 IMV membrane protein; Provisional
Probab=29.24 E-value=79 Score=21.20 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 047293 234 ALFIVLFVLVFL 245 (246)
Q Consensus 234 ~~~i~l~~~~~~ 245 (246)
+++++|++-.+|
T Consensus 12 VaIi~lIvYgiY 23 (68)
T PHA03049 12 VVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344445554444
No 214
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=29.18 E-value=75 Score=24.13 Aligned_cols=20 Identities=10% Similarity=0.271 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~ 242 (246)
.++.++++|-+++.++|+++
T Consensus 28 ~kY~~Iv~FEi~va~~L~~~ 47 (128)
T PHA02689 28 ESYLAIAVLELLLALALALV 47 (128)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34556666655544444443
No 215
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=29.17 E-value=1.9e+02 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTART 93 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~ 93 (246)
++|-..=..|...+...++.++.+.+||++|+.++++++.=...+..+..
T Consensus 172 DeIi~~n~~L~~~w~~ykr~l~~v~~np~~f~~~~~~l~~le~ll~~le~ 221 (567)
T PF14745_consen 172 DEIIEQNPSLRDHWSLYKRMLKSVRHNPSKFGVTEEKLRQLEKLLADLEG 221 (567)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcChhhcCCCHHHHHHHHHHHHHHHH
Confidence 45555556788888899999999999999999998888877777777765
No 216
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=29.17 E-value=18 Score=28.28 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHccccchhHHHHHHH
Q 047293 212 KVAMVMKKASAKGQIMMILFLI 233 (246)
Q Consensus 212 ~l~~~~~~~~~~~~~~~i~~li 233 (246)
+.....+....+-.||.++-++
T Consensus 144 ~~~~~~es~~~~i~~~si~~~~ 165 (183)
T PF01105_consen 144 RHRQLNESTNSRIMWWSIIQIV 165 (183)
T ss_dssp ----------------------
T ss_pred HHHHHHHHhhheEEhHHHHHHH
Confidence 3334444444444444444333
No 217
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=29.13 E-value=2.8e+02 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047293 73 WYGIDDIELEKRRRWTSTARTQVSSMKKAVLSG 105 (246)
Q Consensus 73 k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~ 105 (246)
+..++..|+..++..+..++.++...+..+...
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (265)
T TIGR00999 48 QGVIPRQEFESAEYALEEAQAEVQAAKSELRSA 80 (265)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345889999999999999999999998877643
No 218
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=29.11 E-value=2.1e+02 Score=20.14 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=10.2
Q ss_pred HhHhHHHHHHHHHHHHHHHH
Q 047293 200 DSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 200 ~~~~~~l~~~~~~l~~~~~~ 219 (246)
+.+..+.+.+...+...++.
T Consensus 52 ~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 52 DQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555
No 219
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.07 E-value=1.3e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHccccchhHHHHHHHHHHHH
Q 047293 214 AMVMKKASAKGQIMMILFLIALFIV 238 (246)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~li~~~i~ 238 (246)
..++++--+..-|.+|++|++-++.
T Consensus 63 G~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 63 GWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3444544445567777777665553
No 220
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=29.03 E-value=3.7e+02 Score=23.74 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047293 81 LEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 81 l~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
+..|-..+.+.-.++..++..+.
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554
No 221
>PHA02967 hypothetical protein; Provisional
Probab=28.76 E-value=75 Score=24.14 Aligned_cols=20 Identities=5% Similarity=0.358 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~ 242 (246)
.++.++++|-+++.++|+.+
T Consensus 25 ~kY~~Iv~FEi~val~L~~~ 44 (128)
T PHA02967 25 NKYFYILVFEVIVALIIINF 44 (128)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 34556666655544444443
No 222
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57 E-value=3.9e+02 Score=23.16 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=3.6
Q ss_pred hhHHhHhHHH
Q 047293 197 TEMDSTSNRL 206 (246)
Q Consensus 197 ~~v~~~~~~l 206 (246)
..++.+..++
T Consensus 87 ~eI~~~~~~I 96 (265)
T COG3883 87 KEIAELKENI 96 (265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 223
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=28.53 E-value=1.9e+02 Score=19.60 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 047293 227 MMILFLIALFIV 238 (246)
Q Consensus 227 ~~i~~li~~~i~ 238 (246)
+.|.|++.++++
T Consensus 54 laiGfvfA~vLv 65 (73)
T COG4218 54 LAIGFVFAGVLV 65 (73)
T ss_pred HHHHHHHHHHHH
Confidence 444555544333
No 224
>PRK11519 tyrosine kinase; Provisional
Probab=28.20 E-value=6e+02 Score=25.21 Aligned_cols=62 Identities=8% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAV 102 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~ 102 (246)
.....=|.+.+..++.+|+..+..+.......+-.. .+.|.+..-+.+.+++.++.++....
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd-~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD-LPLEAKAVLDSMVNIDAQLNELTFKE 327 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777765554221111 24556666666667777766665433
No 225
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=27.90 E-value=19 Score=28.21 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047293 227 MMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~~ 245 (246)
.+|++|.+|.+++++++|+
T Consensus 57 vVIivl~Vi~lLvlYM~fL 75 (149)
T PF05434_consen 57 VVIIVLWVIGLLVLYMLFL 75 (149)
T ss_pred EEEEeHHHHHHHHHHHHHH
Confidence 3344555555555555554
No 226
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=27.75 E-value=2.3e+02 Score=20.31 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=16.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHcccc
Q 047293 199 MDSTSNRLDFVQKKVAMVMKKASAK 223 (246)
Q Consensus 199 v~~~~~~l~~~~~~l~~~~~~~~~~ 223 (246)
.+.+-+-+..-++++..+..++++|
T Consensus 47 ~~kv~~W~~~k~k~~~~FV~RNk~W 71 (100)
T PF06363_consen 47 CDKVKSWVKNKMKSMLSFVERNKAW 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchH
Confidence 3444455566677888888886543
No 227
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=27.69 E-value=53 Score=28.22 Aligned_cols=18 Identities=44% Similarity=0.805 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 227 MMILFLIALFIVLFVLVF 244 (246)
Q Consensus 227 ~~i~~li~~~i~l~~~~~ 244 (246)
.+|-.+|+-+|+++++||
T Consensus 411 vmihyiivgliviv~vv~ 428 (436)
T PF13044_consen 411 VMIHYIIVGLIVIVVVVF 428 (436)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445556665665555554
No 228
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=27.68 E-value=2.6e+02 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 78 DIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 78 ~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
...+++|-..+..+..-+..++..+.=
T Consensus 20 a~~~~~R~~~L~~l~~~l~~L~~EI~Y 46 (170)
T TIGR02833 20 ANRFKERPRQLRQLINALQSLEAEIVY 46 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777777777776543
No 229
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=27.63 E-value=2.6e+02 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 78 DIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 78 ~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
...+.+|-..+..+..-+..++....-
T Consensus 21 a~~~~~R~~~L~~l~~~l~~L~~EI~Y 47 (171)
T PRK08307 21 AKRYKERPRQLRELKAALQSLEAEIMY 47 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777777777776653
No 230
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=27.08 E-value=1.9e+02 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhHHhHhHHH
Q 047293 187 AQENIIDELGTEMDSTSNRL 206 (246)
Q Consensus 187 ~Q~~lLd~i~~~v~~~~~~l 206 (246)
.|-.||..++..-.+...++
T Consensus 154 ~~~~Ll~kL~~~k~Kl~kkl 173 (336)
T PF05055_consen 154 QQSSLLEKLDSRKKKLRKKL 173 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666555444444444
No 231
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.93 E-value=4.3e+02 Score=23.13 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWT 88 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v 88 (246)
-|..=.|+.++..|++|++.+..+..+ +.++..-..+=|+
T Consensus 113 VEAQLALKEARkEIkQLkQvieTmrss-----L~ekDkGiQKYFv 152 (305)
T PF15290_consen 113 VEAQLALKEARKEIKQLKQVIETMRSS-----LAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hchhhhhHHHHHh
Confidence 344457888888889999988887753 4444444445444
No 232
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=26.78 E-value=88 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 047293 222 AKGQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 222 ~~~~~~~i~~li~~~i~l~~~ 242 (246)
.++-|+.|.+|+++.+++.|+
T Consensus 41 tkg~w~gig~l~~~wi~vrfi 61 (68)
T PF10999_consen 41 TKGPWIGIGILVLIWIIVRFI 61 (68)
T ss_pred hcccchhHHHHHHHHHHHHhh
Confidence 356677887666666555543
No 233
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=26.70 E-value=3.3e+02 Score=21.76 Aligned_cols=56 Identities=5% Similarity=0.170 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 164 LDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 164 l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
+-.+...+.+++.+...+...=.+.+.++.+|...=+.|.+-+..-++.|.+=+..
T Consensus 106 ~~t~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq~ 161 (166)
T PF06193_consen 106 ICTKDNIIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQS 161 (166)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566777788888888888889999999998888999999999888876654
No 234
>CHL00031 psbT photosystem II protein T
Probab=26.66 E-value=86 Score=17.93 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 229 ILFLIALFIVLFVLVF 244 (246)
Q Consensus 229 i~~li~~~i~l~~~~~ 244 (246)
+++|+..+-+|++.+|
T Consensus 7 tfll~~tlgilFFAI~ 22 (33)
T CHL00031 7 TFLLVSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHHHHHhhe
Confidence 3444444444444443
No 235
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=3.9e+02 Score=22.39 Aligned_cols=54 Identities=9% Similarity=0.197 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 9 YIVKEEIQDSINKLQSTFHQWEN----SASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVAS 68 (246)
Q Consensus 9 ~~~~~ev~~~l~~l~~~~~~~~~----l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~ 68 (246)
.....+|.+.+..+...+.+.+- ++|+ ..+-+...++....++++|+..++...
T Consensus 35 k~~l~~i~~~leEa~ell~qMdlEvr~lp~~------~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 35 KQLLSEIDSKLEEANELLDQMDLEVRELPPN------FRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCch------hhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888888888877654 2332 255677888899999999998887544
No 236
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=26.19 E-value=1.1e+02 Score=19.85 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047293 228 MILFLIALFIVLFVLVFL 245 (246)
Q Consensus 228 ~i~~li~~~i~l~~~~~~ 245 (246)
+.++|+.++|+|+-+-||
T Consensus 15 vllllf~iliilisikfy 32 (68)
T MTH00261 15 VLLLLFFILIILISIKFY 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555544443
No 237
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=26.13 E-value=2.4e+02 Score=20.02 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTE 198 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~ 198 (246)
.+++..+...+.||+.+-+++.+..+.=.-++|++.++
T Consensus 8 ~~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~ 45 (102)
T PF07097_consen 8 SEQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNN 45 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 46678888999999999888766555445666666554
No 238
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.03 E-value=78 Score=26.39 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=2.4
Q ss_pred HHHHHH
Q 047293 229 ILFLIA 234 (246)
Q Consensus 229 i~~li~ 234 (246)
|.+||+
T Consensus 137 IAVLfL 142 (227)
T PF05399_consen 137 IAVLFL 142 (227)
T ss_pred HHHHHH
Confidence 334433
No 239
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.94 E-value=2.7e+02 Score=23.41 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
+++-...+..+...+.....-+...-.|+..-+.-+..++..++++..++..+..++..+-..
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~ 72 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKR 72 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444455666777777777777778888888888888889999998888888888888776543
No 240
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.87 E-value=1.7e+02 Score=21.29 Aligned_cols=26 Identities=38% Similarity=0.541 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASVQRIGG 176 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v~~l~~ 176 (246)
..|..+|..+.+.+|.|+.+|..|.+
T Consensus 85 ~rQN~mm~~qqqsidslsksvgklah 110 (121)
T PF10669_consen 85 NRQNNMMKQQQQSIDSLSKSVGKLAH 110 (121)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 56778888888999999999988765
No 241
>KOG4358 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=4e+02 Score=25.21 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHhcc--------CCc--hhHHHHHHHHHHHHHHHHHHHHH
Q 047293 4 AQDPFYIVKEEIQDSINKLQSTFHQWENSA--------SDP--GEQVHLKKELLAGCESIEWQVDE 59 (246)
Q Consensus 4 ~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~--------~~~--~~~~~~~~ei~~~i~~l~~~l~~ 59 (246)
.+|||-.+.+++...|+.+..+.++.+... +++ .-+.-....+|+.+..+.....+
T Consensus 496 ~EDrfGVVQ~DLpaiI~~l~KL~~aiDkys~r~~gsi~d~S~~t~~~~~raslk~SLyrI~ttFg~ 561 (584)
T KOG4358|consen 496 TEDRFGVVQTDLPAIINTLLKLQEAVDKYSPRISGSLVDTSYKTLRFAFRASLKTSLYRITTTFGE 561 (584)
T ss_pred cCCccceecccHHHHHHHHHHHHHHHHhhChhheeeeeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998888877766665542 122 22444567777777777777654
No 242
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.60 E-value=5.8e+02 Score=24.15 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047293 20 NKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99 (246)
Q Consensus 20 ~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~ 99 (246)
..+...+..|..+..++.+ .-....+....+.+...+..+...|..++..- ..++..-=+.+..+-+++.++.
T Consensus 119 ~~l~~ff~a~~~la~~P~~-~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~------~~~i~~~V~~iN~ll~~Ia~LN 191 (507)
T PRK07739 119 KVLDQFWNSLQELSKNPEN-LGARSVVRQRAQALAETFNYLSQSLTDIQNDL------KSEIDVTVKEINSLASQISDLN 191 (507)
T ss_pred HHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 100 KAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASV 171 (246)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~~v 171 (246)
..+...... +.+..++ ++++|.-|++|++-|
T Consensus 192 ~~I~~~~~~------------------------------g~~~ndL-----------lDqRD~ll~~LS~~v 222 (507)
T PRK07739 192 KQIAKVEPN------------------------------GYLPNDL-----------YDQRDLLLDELSKIV 222 (507)
T ss_pred HHHHHHhcC------------------------------CCCCchh-----------HHHHHHHHHHHHhhc
No 243
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=25.51 E-value=1.9e+02 Score=19.03 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.3
Q ss_pred hHhHHHHHHHHH
Q 047293 201 STSNRLDFVQKK 212 (246)
Q Consensus 201 ~~~~~l~~~~~~ 212 (246)
.+...|.+.-++
T Consensus 10 TA~~FL~RvGr~ 21 (60)
T PF06072_consen 10 TATEFLRRVGRQ 21 (60)
T ss_pred cHHHHHHHHhHH
Confidence 344444444443
No 244
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.48 E-value=3.1e+02 Score=20.98 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
......+...++.....+..+.+.+. .. +..+|+.+...+...+.....++........
T Consensus 42 ~~~~~~~~~~l~~~~~el~~~~~~l~---~~--~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~ 100 (158)
T PF03938_consen 42 QEKFKALQKELQAKQKELQKLQQKLQ---SQ--KATLSEEERQKRQQELQQKEQELQQFQQQAQ 100 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TS------SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH--hhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544 21 2257888888888877777777666665544
No 245
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.36 E-value=77 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 047293 226 IMMILFLIALFIVLFVL 242 (246)
Q Consensus 226 ~~~i~~li~~~i~l~~~ 242 (246)
|..++++++++++++|+
T Consensus 18 ~~~ll~lvii~~i~yf~ 34 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFL 34 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444343
No 246
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.18 E-value=4.1e+02 Score=22.25 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 160 QDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 160 qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
.|..++.|...+...+.++.....-+++=..-|.-+..+++++..++..+-.++..+
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 345555555555555555555555555555555555555555555555555555544
No 247
>PTZ00046 rifin; Provisional
Probab=25.04 E-value=3.4e+02 Score=24.59 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047293 227 MMILFLI 233 (246)
Q Consensus 227 ~~i~~li 233 (246)
-+|.-.|
T Consensus 316 aIiaSii 322 (358)
T PTZ00046 316 AIIASIV 322 (358)
T ss_pred HHHHHHH
Confidence 3333333
No 248
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.03 E-value=6.4e+02 Score=24.43 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhh
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPS----WYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRR 120 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~----k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~ 120 (246)
.++.....+..|+...+.++..++.... +..--..|+..-...++.++.+.+++++.+....-+
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS------------ 330 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGIS------------ 330 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Confidence 3445555556666666665554443211 111124566666666667777777777666532100
Q ss_pred hhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047293 121 ELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEM 199 (246)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v 199 (246)
+..+..+ |.+ ...=..-+..-..++|.|...|..++-.+.+.-.+++.+-.-++.+-..+
T Consensus 331 ---------~~dve~m-----n~E-----r~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 331 ---------GEDVERM-----NLE-----RNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred ---------HHHHHHH-----HHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 01112234455567888888888888877777777766655554444433
No 249
>COG4640 Predicted membrane protein [Function unknown]
Probab=24.93 E-value=84 Score=28.83 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHc
Q 047293 205 RLDFVQKKVAMVMKKA 220 (246)
Q Consensus 205 ~l~~~~~~l~~~~~~~ 220 (246)
+=..+++.+...+...
T Consensus 28 ~~sqan~~tn~i~~tr 43 (465)
T COG4640 28 RQSQANKSTNEIIQTR 43 (465)
T ss_pred hhhhhhHHHHHHHHhh
Confidence 3345555666665544
No 250
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.84 E-value=2.3e+02 Score=19.19 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhHHhHh
Q 047293 187 AQENIIDELGTEMDSTS 203 (246)
Q Consensus 187 ~Q~~lLd~i~~~v~~~~ 203 (246)
.|...++.++.-|..-+
T Consensus 19 fQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 19 FQEITIEELNVTVTAHE 35 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 251
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.71 E-value=2.8e+02 Score=25.47 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047293 211 KKVAMVM 217 (246)
Q Consensus 211 ~~l~~~~ 217 (246)
+++.+++
T Consensus 157 ~Ki~~Al 163 (397)
T COG1459 157 KKIKSAL 163 (397)
T ss_pred HHHHHHH
Confidence 3333333
No 252
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.58 E-value=4.9e+02 Score=22.99 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASVQRI 174 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v~~l 174 (246)
.-|+..+++++..++.|...|..+
T Consensus 84 ~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 84 AAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666433
No 253
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.43 E-value=6.7e+02 Score=25.37 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 37 GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGID----DIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 37 ~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is----~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
..+.--+..|+-.+..+-..++.++-.+...+....-.++| ++|+.|-+.+...|..-...+...+.
T Consensus 490 q~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls 560 (861)
T PF15254_consen 490 QQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLS 560 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444555666677777777777777777766543222333 45666666666666655555555443
No 254
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=24.12 E-value=59 Score=17.93 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=8.9
Q ss_pred CCCCCchHhHHHHHHH
Q 047293 2 SSAQDPFYIVKEEIQD 17 (246)
Q Consensus 2 ~~~~Dpf~~~~~ev~~ 17 (246)
+|+.|||-..++.+++
T Consensus 3 is~~d~f~eFY~rlk~ 18 (28)
T PF12108_consen 3 ISGGDPFSEFYERLKE 18 (28)
T ss_dssp --S--HHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHH
Confidence 3678898888876654
No 255
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=23.99 E-value=3e+02 Score=21.91 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=16.2
Q ss_pred HhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 195 LGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 195 i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
+-.++.+-.-.++.+.++++++.....
T Consensus 73 l~~~~~~~~~~~~ea~~~L~~I~~~~~ 99 (193)
T PF06738_consen 73 LSRRIVAGQLSLEEAIERLDEIDREPP 99 (193)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhhCCC
Confidence 333344444456677788888877653
No 256
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.91 E-value=3.2e+02 Score=20.57 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHh----ccCC----chhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHc
Q 047293 3 SAQDPFYIVKEEIQDSINKLQSTFHQWEN----SASD----PGEQVHLKKE------LLAGCESIEWQVDELDKAIGVAS 68 (246)
Q Consensus 3 ~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~----l~~~----~~~~~~~~~e------i~~~i~~l~~~l~~L~~~l~~~~ 68 (246)
++..|=....+.+.+.|+...+.+...+. +... ..++..++.+ ....+..+...+.+|+.-+..+
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~- 87 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL- 87 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34566677788888888887776554433 1100 1122222221 2223333344444444333321
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 69 RDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 69 ~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
-.=+-.+...+..|+..+.+++..|.
T Consensus 88 ---------LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 88 ---------LELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred ---------HHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 11123355667788888888888775
No 257
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=23.89 E-value=19 Score=34.04 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHH
Q 047293 203 SNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 203 ~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~ 244 (246)
...+....+.+.-+-.-.++|+.|..++++++++++|+++++
T Consensus 431 ~~~~~~~~~~v~~v~~~~~~W~~~~~~~~~~vi~~illi~l~ 472 (501)
T PF00974_consen 431 DGHTPDSKNPVSLVDLWFSNWGEWLSIIAIAVILLILLILLI 472 (501)
T ss_dssp ------------------------------------------
T ss_pred cCCcCcCCCeeeEeecccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433334444443333567777776665555555555544
No 258
>COG2034 Predicted membrane protein [Function unknown]
Probab=23.84 E-value=1.2e+02 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 047293 224 GQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~~~~ 245 (246)
+...+.+++.+++.++++++++
T Consensus 61 ~~~~~~~vlalilmil~~~l~~ 82 (85)
T COG2034 61 RMAIISVVLALILMILWLLLFL 82 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3344556666667777776665
No 259
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.60 E-value=2.1e+02 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 047293 178 GLTIHDELVAQENIIDELGTEMD 200 (246)
Q Consensus 178 ~~~i~~el~~Q~~lLd~i~~~v~ 200 (246)
=..+..|+..|.+-||+++..++
T Consensus 78 k~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 78 KEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456678888888988888764
No 260
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.50 E-value=5.9e+02 Score=25.92 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 146 IQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 146 ~~~~~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
+....+.-+-++.++|-++..+.+...++...-.....|+.+++..-..+.++++.....++.+..+...+..
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
No 261
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=23.32 E-value=3.9e+02 Score=21.29 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Q 047293 174 IGGVGLTIHD-ELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 174 l~~~~~~i~~-el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~ 241 (246)
|++.|..+|. .++.|.+.++-.-.+ |+........-..+ ..+.|-+..++.-+++|+++
T Consensus 111 L~~lg~~LG~~D~e~Q~k~i~L~~e~-------L~~~~~~a~~~~~k--~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 111 LLQFGKTLGQSDREGQQKHIRLALEH-------LEREEEEAEEEQKK--NEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHh
Confidence 3344444443 355666665443333 33333333333333 34556666666655555543
No 262
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.31 E-value=4.3e+02 Score=21.86 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDK 62 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~ 62 (246)
++...+......+.+|++
T Consensus 122 ~l~~~~~~~~~~~~~L~~ 139 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKE 139 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 263
>PHA03332 membrane glycoprotein; Provisional
Probab=23.07 E-value=2.9e+02 Score=28.92 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 14 EIQDSINKLQSTFHQWEN-SASDPGEQVHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 14 ev~~~l~~l~~~~~~~~~-l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
++++.|..++..++.... ...-+..+..+++++.+.|+.....+++|+..+.
T Consensus 895 ~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 895 EMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHH
Confidence 345555555555444333 2233456788999999999999999999988876
No 264
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=3.3e+02 Score=20.44 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=10.1
Q ss_pred HHHHHccccchhHHHHHHHHHHHHHHHH
Q 047293 215 MVMKKASAKGQIMMILFLIALFIVLFVL 242 (246)
Q Consensus 215 ~~~~~~~~~~~~~~i~~li~~~i~l~~~ 242 (246)
++....++ ...-+.+.+++.++|.+++
T Consensus 86 r~~~~ar~-sg~~l~~~m~~f~lV~~fi 112 (118)
T KOG3385|consen 86 RLKTMARR-SGISLLCWMAVFSLVAFFI 112 (118)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHHHH
Confidence 33334333 2333334443333333333
No 265
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.90 E-value=2e+02 Score=19.90 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047293 39 QVHLKKELLAGCESIEWQVDELDKAIGVASRDPS 72 (246)
Q Consensus 39 ~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~ 72 (246)
+.+-...++..|+.++..|.++.+...+.+.-|.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe 38 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQIKEDIPE 38 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Confidence 4455566777777777777777777665555553
No 266
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.84 E-value=1.8e+02 Score=24.08 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHH
Q 047293 154 LLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLI 233 (246)
Q Consensus 154 ~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li 233 (246)
-.+..+-.+..+.++..|..|.+--..|..|=..|.. --.+.+..-+...++-.||.|+=++
T Consensus 131 a~l~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~------------------RE~~FR~tSES~NsRvm~Wsv~Q~v 192 (215)
T KOG1690|consen 131 ANLDAQIKETDKLLEGRVRQLNSRLESIRKEQNLQRE------------------REETFRDTSESANSRVMWWSVAQLV 192 (215)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHhhhhhhcceeeehhHHHHH
Confidence 3445555566677777676666655555544333221 1223333344445677777775443
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.80 E-value=4.7e+02 Score=22.15 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 41 HLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKA 101 (246)
Q Consensus 41 ~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~ 101 (246)
.-..++...+..++..+..++.-++.++... +.-.+++.++-.-+..|+.+++++...
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~---s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVEN---SRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3344555555556666666666555544321 112333444444566666666665543
No 268
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=22.70 E-value=28 Score=26.76 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHhHhHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDE---LGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~---i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
.+..-...++....+|..|...+-.+.+.+..-....+. |..++.+....+..|.....++
T Consensus 46 ~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~I 109 (138)
T PF06009_consen 46 DISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRI 109 (138)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 344566777777788888877777777666655555555 6666666666666665555544
No 269
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=22.67 E-value=1.5e+02 Score=29.88 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHh
Q 047293 187 AQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 187 ~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~~~~~ 245 (246)
+|.+++...-.+-+..-.++ -.+-+-.+...++.+-++|+++++ ++++|+++..|+
T Consensus 26 eqk~~~i~ei~~ee~~Pt~~--R~kY~~Y~~CATSTRim~Wilf~c-vll~Iv~iscfv 81 (981)
T PF03408_consen 26 EQKQQPIDEIQNEEVVPTRM--RCKYLCYLCCATSTRIMAWILFVC-VLLSIVLISCFV 81 (981)
T ss_pred hhhhcccccccccccccHHH--hHHHHHHHHHcchhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55555533333333333444 223333345555665544444433 444444444444
No 270
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=22.56 E-value=92 Score=20.83 Aligned_cols=13 Identities=8% Similarity=-0.146 Sum_probs=7.9
Q ss_pred ccchhHHHHHHHH
Q 047293 222 AKGQIMMILFLIA 234 (246)
Q Consensus 222 ~~~~~~~i~~li~ 234 (246)
..++|+++..|+.
T Consensus 26 ~~WyWIgvgaL~G 38 (65)
T PF08370_consen 26 SYWYWIGVGALLG 38 (65)
T ss_pred CcEEeehHHHHHH
Confidence 3566777766653
No 271
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.53 E-value=3.8e+02 Score=22.72 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=9.1
Q ss_pred hHH-HHHHHHHHHHHHHHH
Q 047293 226 IMM-ILFLIALFIVLFVLV 243 (246)
Q Consensus 226 ~~~-i~~li~~~i~l~~~~ 243 (246)
||+ +.+-.+|+..|.++.
T Consensus 200 ~Wv~l~iG~iIi~tLtYvG 218 (232)
T PF09577_consen 200 IWVMLSIGGIIIATLTYVG 218 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444 444455555655543
No 272
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.46 E-value=7.4e+02 Score=24.25 Aligned_cols=104 Identities=13% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047293 20 NKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99 (246)
Q Consensus 20 ~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~ 99 (246)
..+...+..|..+..++.+ .-....+....+.+...+..+...|..++..- ..++..-=+.+..+-+++.++.
T Consensus 119 ~~l~~ff~al~~ls~~P~~-~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~------~~~i~~~V~~iN~ll~qIa~LN 191 (627)
T PRK06665 119 TRLDDFWDSWQDLSNYPEG-LAERQVVLERAQSLGERIHDRYRSLERIRDMA------NDEIEITVEEINNILRNIADLN 191 (627)
T ss_pred HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 100 KAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASV 171 (246)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~~v 171 (246)
..+...... +.+..++ ++++|..|++|++-|
T Consensus 192 ~qI~~~~~~------------------------------g~~~ndL-----------lDqRD~ll~eLS~~v 222 (627)
T PRK06665 192 EQIVKSQAM------------------------------GDNPNDL-----------LDRRDLLVDKLSSLI 222 (627)
T ss_pred HHHHHhhcC------------------------------CCCchhh-----------HHHHHHHHHHHHhhc
No 273
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=22.22 E-value=6.4e+02 Score=23.46 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC-CCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRDP-SWY-GIDDIELEKRRRWTSTARTQVSSMKK 100 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~~-~k~-~is~~El~~R~~~v~~l~~~~~~l~~ 100 (246)
..|...-..+-..++||+..+..+.++. .|+ ..++..+..=..-+..+.++++.|..
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~ 271 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEE 271 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 111 23344444333344444444444443
No 274
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.09 E-value=4.7e+02 Score=21.89 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047293 174 IGGVGLTIHDELVAQENIIDELGT 197 (246)
Q Consensus 174 l~~~~~~i~~el~~Q~~lLd~i~~ 197 (246)
.+.++..+.++.+.|.-|.-.|++
T Consensus 133 ~~n~~~~n~el~~v~~im~~nied 156 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLED 156 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455555555555555555543
No 275
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.05 E-value=6.5e+02 Score=23.43 Aligned_cols=94 Identities=7% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCCCCHHH
Q 047293 11 VKEEIQDSINKLQSTFHQWENS-----ASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRD-----PSWYGIDDIE 80 (246)
Q Consensus 11 ~~~ev~~~l~~l~~~~~~~~~l-----~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~-----~~k~~is~~E 80 (246)
...+++..+...+..+..+... +.........-..+...+..++.++..++..+..+++. |.-...+...
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~ 248 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVA 248 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccC
Confidence 3445555566665555554331 11111233334555666666666666666655555431 1100000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 81 LEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 81 l~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
...-+..+.++..++.++...|..
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~~y~~ 272 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRLRYTD 272 (498)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcc
Confidence 122233366677777777766643
No 276
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.01 E-value=1.3e+02 Score=20.12 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 047293 231 FLIALFIVLFVL 242 (246)
Q Consensus 231 ~li~~~i~l~~~ 242 (246)
+.++|++.|++.
T Consensus 11 v~v~Ivclliya 22 (70)
T PHA02902 11 VIVIIFCLLIYA 22 (70)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 277
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.95 E-value=9.7e+02 Score=25.42 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHH
Q 047293 37 GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKR--RRWTSTARTQVSSMK 99 (246)
Q Consensus 37 ~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R--~~~v~~l~~~~~~l~ 99 (246)
++...+..++|..|..++.+|.-|++++.. ..++..|..++ ..++.++.+++-++.
T Consensus 1059 KEms~Is~eLReQIq~~KQ~LesLQRAV~T-------PVvtd~eKvr~rYe~LI~~iTKrIt~LE 1116 (1439)
T PF12252_consen 1059 KEMSKISSELREQIQSVKQDLESLQRAVVT-------PVVTDAEKVRVRYETLITDITKRITDLE 1116 (1439)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhcc-------cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355568999999999999998888876641 13444443222 234455555555444
No 278
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=21.89 E-value=1.6e+02 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~ 65 (246)
.|-..|+.|-..|+.|+.-.+
T Consensus 302 AISssI~dIy~RLd~leAdaQ 322 (610)
T PF01601_consen 302 AISSSIQDIYNRLDQLEADAQ 322 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHhhccc
Confidence 455556666666666665544
No 279
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=21.82 E-value=4.1e+02 Score=21.09 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Q 047293 174 IGGVGLTIHD-ELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 174 l~~~~~~i~~-el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~ 241 (246)
|++.|..+|. .++.|.+.++-.-.+ |+........-..+ ..+.|-+..++.-+++|+++
T Consensus 110 L~~lG~~LG~~D~e~Q~k~i~L~~~~-------L~~~~~~a~~~~~k--~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 110 LLQFGKTLGESDREGQQKHINLTLEH-------LERQLTEAEDEQKK--NEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHh
Confidence 3334444443 355666655444333 33333333333332 34555566666655555543
No 280
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.73 E-value=4.1e+02 Score=21.00 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=26.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Q 047293 175 GGVGLTIH-DELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 175 ~~~~~~i~-~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i~l~~ 241 (246)
.+.+..+| ...+.|.+.|+-.-. +|+......+.-..+ ..+.|-+..++.-+++++++
T Consensus 111 ~~lg~~LG~~D~~~Q~k~i~l~~~-------~L~~~~~~a~~~~~~--~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 111 LELGKSLGYSDREMQEKHIELYLE-------QLEQQLEEAREEAKK--KGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHh
Confidence 33444442 245566665544433 333333333333333 33455556666555554443
No 281
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=3.8e+02 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047293 163 ELDELSASVQRIGGVGLT 180 (246)
Q Consensus 163 ~l~~l~~~v~~l~~~~~~ 180 (246)
+|..|-..+.+-=+|+..
T Consensus 324 ~Le~iY~~~r~yleI~qR 341 (399)
T KOG2861|consen 324 QLEPIYEATRRYLEIGQR 341 (399)
T ss_pred hHHHHHHHHHHHcccchH
Confidence 444555555544444333
No 282
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.58 E-value=4.4e+02 Score=22.26 Aligned_cols=59 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047293 10 IVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASR 69 (246)
Q Consensus 10 ~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~ 69 (246)
..+-++...+..++....+...+....+...++- +|.+.|..++.+|+.++..++.+..
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l-~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLL-EIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 283
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.45 E-value=5.6e+02 Score=22.43 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHH
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKK 212 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~ 212 (246)
.+.+....|...+..+..-...+.+.++.=+.-|+......+.+...+.+...+
T Consensus 230 ~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~ 283 (304)
T PF02646_consen 230 AQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGN 283 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444444444444444444444444444444444433
No 284
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.27 E-value=6.9e+02 Score=23.46 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047293 20 NKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99 (246)
Q Consensus 20 ~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~ 99 (246)
..+...+..|..+..++.+ .-....+....+.+...+..+...+..++..- ..++..-=..+..+-+++.++.
T Consensus 102 ~~l~~ff~a~~~la~~P~~-~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~------~~~i~~~V~~iN~l~~~Ia~LN 174 (483)
T PRK07521 102 ARLSDFQAALQTAASSPDN-TTLAQAAVDAAQDLANSLNDASDAVQSARADA------DAEIADSVDTLNDLLAQFEDAN 174 (483)
T ss_pred HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 100 KAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASV 171 (246)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~~v 171 (246)
..+...... +.+..++ ++++|.-|++|++.|
T Consensus 175 ~~I~~~~~~------------------------------g~~~ndL-----------~DqRD~ll~~LS~~v 205 (483)
T PRK07521 175 NAVVSGTAT------------------------------GRDASDA-----------LDQRDKLLKQISQIV 205 (483)
T ss_pred HHHHHhccC------------------------------CCCchhh-----------HHHHHHHHHHHHhhc
No 285
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=21.24 E-value=4.6e+02 Score=21.42 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
+...-..|.....++.....++..-..|+.++..||..-...|+.....|..+...+.+.-
T Consensus 111 ~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 111 LETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888899999999999999999999999999999999999998888776653
No 286
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.17 E-value=3.9e+02 Score=20.60 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchh
Q 047293 152 RQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQI 226 (246)
Q Consensus 152 ~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~ 226 (246)
.++.....+...+..+...+..+...+ ...+.---.+......+...+..-.+++.++.+.+..-+.|
T Consensus 30 ~a~~~~~~~~~~l~~~~~qL~~l~~~a-------~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 30 RANRVLKAQQAELASKANQLIVLLALA-------KRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 344455556666666666665554443 33444444666777788888888888888888877654444
No 287
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.84 E-value=5.8e+02 Score=22.46 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
.+.+-.+......++.-|..++.++..=....|.+...+..+...+....+.++.+..
T Consensus 192 he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 192 HEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555566666666666666666666666666666654443
No 288
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.81 E-value=3e+02 Score=19.08 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 35 DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKK 100 (246)
Q Consensus 35 ~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~ 100 (246)
+++++...+..||-.|+.++..|..|...=..++ --..+++..+..+...+.-+..+++
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~e-------eq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVE-------EQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888877777543111111 1234455555555555554444443
No 289
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=20.67 E-value=1.4e+02 Score=19.16 Aligned_cols=18 Identities=39% Similarity=0.816 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047293 228 MILFLIALFIVLFVLVFL 245 (246)
Q Consensus 228 ~i~~li~~~i~l~~~~~~ 245 (246)
+.++|...++-|.|+.+.
T Consensus 13 LlLill~liiTLyVwi~l 30 (57)
T PF01445_consen 13 LLLILLYLIITLYVWIIL 30 (57)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555565554
No 290
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.64 E-value=3e+02 Score=18.99 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 190 NIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 190 ~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
.-.|.++.+|+.+...+..+...-.+...+
T Consensus 39 Akv~qLe~dv~a~~~~~qAAk~eaarAn~r 68 (78)
T COG4238 39 AKVDQLENDVNAMRSDVQAAKDEAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344556666666665555555544444433
No 291
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.58 E-value=2.9e+02 Score=18.81 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=7.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 047293 224 GQIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~~~ 244 (246)
+..++.+.+++.+++=+.++|
T Consensus 58 ~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 58 RALILALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 292
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=20.55 E-value=6.7e+02 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047293 227 MMILFLIALFI 237 (246)
Q Consensus 227 ~~i~~li~~~i 237 (246)
..+++|++.++
T Consensus 188 ~~~~lL~l~l~ 198 (406)
T PF04906_consen 188 AYLGLLILDLV 198 (406)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 293
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.49 E-value=1e+03 Score=25.07 Aligned_cols=62 Identities=8% Similarity=0.189 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 160 QDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 160 qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
.-.++..+...+.+|+.=-..+..++..=.+=++.+.....+....++.-+..|+.+-+..+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455555566666666666666666666666666666666667777777777776665544
No 294
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.43 E-value=3.2e+02 Score=19.20 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 150 SDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 150 ~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
...|.++.......=..|..-..-...-...+........++|-++-.+++.+..++..-..++..
T Consensus 17 l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 17 LALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655544444444444444444445566677889999999999999999999888777754
No 295
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.43 E-value=1.6e+02 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.7
Q ss_pred HHHHHHhhhHHh
Q 047293 190 NIIDELGTEMDS 201 (246)
Q Consensus 190 ~lLd~i~~~v~~ 201 (246)
+-+|+|-+=++.
T Consensus 185 ~Tld~l~e~i~e 196 (434)
T COG4499 185 ETLDDLAEFIDE 196 (434)
T ss_pred hhHHHHHHHHHH
Confidence 344555444444
No 296
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.42 E-value=6.6e+02 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 77 DDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 77 s~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
++.++.++..-+..|+++++..+..+.
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888777777666554
No 297
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.13 E-value=4.2e+02 Score=20.48 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRR 85 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~ 85 (246)
|.|..-.+.+...+..+.....+... ++. .+...+..++.+|+.++..+..+... .++...+.
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~------EI~----sL~~K~~~lE~eld~~~~~l~~~k~~-------lee~~~~~ 72 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQ------EIT----SLQKKNQQLEEELDKLEEQLKEAKEK-------LEESEKRK 72 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047293 86 RWTSTARTQVSSMKKAV 102 (246)
Q Consensus 86 ~~v~~l~~~~~~l~~~~ 102 (246)
.-...|.+++..|...+
T Consensus 73 ~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HhHHHHHhhHHHHHHHH
Done!