Query 047293
Match_columns 246
No_of_seqs 145 out of 1167
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dnd_A Syntaxin-10, SYN10; str 99.8 4.3E-20 1.5E-24 140.6 11.3 102 2-103 23-129 (130)
2 2nps_D Syntaxin-6; vesicle fus 99.7 2.7E-18 9.1E-23 121.0 7.9 76 150-225 7-82 (82)
3 1gl2_D Syntaxin 8, vesicle tra 99.6 5E-16 1.7E-20 104.6 7.5 64 155-218 2-65 (65)
4 3hd7_B Syntaxin-1A; membrane p 99.6 6.8E-15 2.3E-19 109.0 12.8 72 155-226 14-85 (109)
5 1dn1_B Syntaxin 1A, syntaxin b 99.6 5.8E-15 2E-19 126.2 8.2 217 5-229 30-267 (267)
6 1n7s_D SNAP-25A; neuronal snar 99.5 2.3E-14 7.7E-19 96.7 8.9 62 156-217 4-65 (66)
7 1sfc_D Protein (SNAP-25B), pro 99.5 3.2E-14 1.1E-18 101.0 8.7 65 155-219 22-86 (87)
8 1l4a_D S-SNAP25 fusion protein 99.5 1.1E-13 3.8E-18 98.1 7.0 64 156-219 24-87 (87)
9 2c5k_T Syntaxin TLG1, T-snare 99.4 3.6E-13 1.2E-17 96.8 8.9 90 4-104 4-93 (95)
10 3b5n_D Protein transport prote 99.4 1E-12 3.6E-17 87.4 8.9 60 156-215 4-63 (64)
11 2xhe_B Syntaxin1; exocytosis, 99.4 1.2E-13 4E-18 118.9 3.2 213 6-222 44-277 (279)
12 1jth_B Syntaxin 1A; coiled-coi 99.3 4.3E-11 1.5E-15 82.9 10.1 74 156-229 4-77 (77)
13 2nps_B Syntaxin 13, vesicle-as 99.1 4.3E-10 1.5E-14 76.6 9.5 68 159-226 3-70 (71)
14 3b5n_B Protein SSO1; snare com 99.0 4E-09 1.4E-13 71.3 10.6 65 156-220 4-68 (69)
15 1sfc_B Protein (syntaxin 1A), 99.0 6E-09 2E-13 73.1 10.8 68 155-222 14-81 (83)
16 1gl2_B Syntaxin 7; membrane pr 98.9 6.7E-09 2.3E-13 69.4 8.1 62 156-217 3-64 (65)
17 1n7s_B Syntaxin 1A; neuronal s 98.9 1.9E-08 6.4E-13 67.8 10.2 62 156-217 6-67 (68)
18 3c98_B Syntaxin-1A; protein co 98.4 4.3E-07 1.5E-11 76.8 5.8 218 5-228 42-278 (279)
19 1fio_A SSO1 protein; four heli 98.3 2.5E-07 8.6E-12 75.0 3.5 174 6-189 5-196 (196)
20 1ez3_A Syntaxin-1A; three heli 97.6 0.0015 5.2E-08 48.7 12.4 97 6-106 8-115 (127)
21 1s94_A S-syntaxin; three helix 97.3 0.002 6.7E-08 51.2 10.2 100 7-110 40-150 (180)
22 3hd7_B Syntaxin-1A; membrane p 97.2 0.016 5.6E-07 42.1 13.8 84 156-243 22-105 (109)
23 3hd7_A Vesicle-associated memb 97.1 0.01 3.5E-07 41.8 11.3 40 165-204 8-47 (91)
24 1n7s_C SNAP-25A; neuronal snar 96.4 0.081 2.8E-06 36.0 11.3 66 151-216 9-77 (79)
25 1nhl_A Synaptosomal-associated 95.5 0.12 4.2E-06 32.4 8.1 46 169-214 7-52 (54)
26 3b5n_C Protein transport prote 94.6 0.53 1.8E-05 31.2 9.6 49 170-218 20-68 (70)
27 2nps_C Vesicle transport throu 94.4 0.7 2.4E-05 31.4 10.1 64 157-220 14-77 (81)
28 1l4a_C S-SNAP25 fusion protein 94.2 0.16 5.4E-06 34.9 6.6 64 151-214 13-79 (83)
29 2kog_A Vesicle-associated memb 94.2 0.008 2.7E-07 44.5 -0.1 19 186-204 57-75 (119)
30 1gl2_C VTI1B, vesicle transpor 94.2 0.26 8.9E-06 32.1 7.3 57 161-217 8-64 (65)
31 4fi5_A Nucleoprotein; structur 90.3 1.8 6.3E-05 30.9 8.0 69 35-105 20-88 (113)
32 1vcs_A Vesicle transport throu 90.2 3.7 0.00013 29.0 10.3 91 3-104 2-92 (102)
33 2k48_A Nucleoprotein; viral pr 89.8 2.2 7.7E-05 30.1 8.0 65 38-104 36-100 (107)
34 2ic6_A Nucleocapsid protein; h 88.9 3.3 0.00011 27.8 7.9 65 38-104 6-70 (78)
35 2ic9_A Nucleocapsid protein; h 85.8 5.3 0.00018 27.8 7.8 65 38-104 6-70 (96)
36 3okq_A BUD site selection prot 72.2 22 0.00076 26.5 8.0 89 8-103 26-124 (141)
37 3hd7_A Vesicle-associated memb 71.4 22 0.00074 24.4 10.9 25 194-218 40-64 (91)
38 2dnx_A Syntaxin-12; snare, HAB 70.9 28 0.00096 25.4 13.5 96 8-106 12-111 (130)
39 3efg_A Protein SLYX homolog; x 65.2 28 0.00094 23.2 6.8 49 161-209 13-61 (78)
40 2kog_A Vesicle-associated memb 60.8 2.8 9.6E-05 30.6 1.1 23 194-216 68-90 (119)
41 3p8c_F ABL interactor 2; actin 60.0 55 0.0019 24.9 10.3 54 157-210 49-102 (159)
42 2qyw_A Vesicle transport throu 59.4 42 0.0014 23.4 13.3 87 6-102 15-101 (102)
43 1ic2_A Tropomyosin alpha chain 57.7 39 0.0013 22.4 8.6 58 162-219 20-77 (81)
44 3htk_A Structural maintenance 56.5 32 0.0011 21.2 7.4 57 6-65 1-57 (60)
45 3ci9_A Heat shock factor-bindi 55.7 30 0.001 20.8 4.9 26 39-64 22-47 (48)
46 4abx_A DNA repair protein RECN 55.7 52 0.0018 25.1 7.8 21 75-95 118-141 (175)
47 2bez_C E2 glycoprotein; coiled 51.3 50 0.0017 21.8 6.7 63 7-69 13-76 (77)
48 3fym_A Putative uncharacterize 45.9 4.3 0.00015 29.7 0.0 9 75-83 16-24 (130)
49 1g6u_A Domain swapped dimer; d 45.5 41 0.0014 19.2 6.2 30 74-103 15-44 (48)
50 2dnx_A Syntaxin-12; snare, HAB 45.1 75 0.0026 23.0 6.8 36 34-69 7-42 (130)
51 3onj_A T-snare VTI1; helix, HA 42.6 80 0.0027 21.7 11.3 83 12-103 7-90 (97)
52 2w6b_A RHO guanine nucleotide 41.8 60 0.002 20.0 8.2 47 37-96 6-52 (56)
53 3s8f_C Cytochrome C oxidase po 39.9 30 0.001 19.2 2.8 22 223-244 6-27 (34)
54 3arc_T Photosystem II reaction 34.7 53 0.0018 17.9 3.2 16 229-244 7-22 (32)
55 3oja_B Anopheles plasmodium-re 34.5 2.6E+02 0.0088 25.2 16.9 63 159-221 520-582 (597)
56 3din_D Preprotein translocase 34.0 83 0.0028 19.9 4.8 39 203-241 5-44 (65)
57 3p8c_D Wiskott-aldrich syndrom 33.7 1.8E+02 0.0063 24.1 8.1 46 174-219 34-79 (279)
58 3u1c_A Tropomyosin alpha-1 cha 31.6 1.3E+02 0.0044 20.8 8.6 53 164-216 25-77 (101)
59 2pnv_A Small conductance calci 30.8 83 0.0028 18.4 4.2 26 40-65 15-40 (43)
60 1m1j_B Fibrinogen beta chain; 30.1 3E+02 0.01 24.6 9.5 93 6-103 89-192 (464)
61 1deq_A Fibrinogen (alpha chain 29.7 2.8E+02 0.0096 24.1 9.1 24 80-103 135-158 (390)
62 3a7p_A Autophagy protein 16; c 29.5 1.8E+02 0.0062 21.8 9.6 60 161-220 67-126 (152)
63 2lw1_A ABC transporter ATP-bin 29.3 1.3E+02 0.0044 20.1 8.6 56 44-103 25-80 (89)
64 1ezj_A Nucleocapsid phosphopro 28.7 1.5E+02 0.005 20.6 6.1 39 156-194 67-105 (115)
65 1cxz_B Protein (PKN); protein- 27.4 1.5E+02 0.005 20.1 7.3 20 79-98 63-82 (86)
66 2qyw_A Vesicle transport throu 27.2 1.6E+02 0.0053 20.4 6.6 55 8-64 47-101 (102)
67 3mk7_C Cytochrome C oxidase, C 27.1 42 0.0014 28.1 3.2 22 224-245 55-76 (311)
68 2f1m_A Acriflavine resistance 26.7 2.4E+02 0.0083 22.4 10.6 58 45-102 64-121 (277)
69 1wyy_A E2 glycoprotein; membra 26.5 1.8E+02 0.006 21.7 6.0 63 7-69 26-89 (149)
70 3ghg_A Fibrinogen alpha chain; 26.2 3.8E+02 0.013 24.5 13.4 106 21-200 50-155 (562)
71 3na7_A HP0958; flagellar bioge 26.0 2.6E+02 0.0088 22.5 10.0 61 154-214 24-84 (256)
72 3efg_A Protein SLYX homolog; x 23.3 1.6E+02 0.0056 19.3 5.7 36 184-219 22-57 (78)
73 2eqb_B RAB guanine nucleotide 22.5 2E+02 0.0067 19.9 5.5 59 7-65 2-64 (97)
74 3u59_A Tropomyosin beta chain; 22.1 1.9E+02 0.0067 19.7 8.6 51 165-215 26-76 (101)
75 1jcd_A Major outer membrane li 22.0 1.4E+02 0.0049 18.1 7.6 18 197-214 32-49 (52)
76 2l5g_B Putative uncharacterize 21.4 1.3E+02 0.0044 17.4 4.6 25 78-102 15-39 (42)
77 3ghg_B Fibrinogen beta chain; 20.2 3.5E+02 0.012 24.2 7.8 86 8-103 86-187 (461)
No 1
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.83 E-value=4.3e-20 Score=140.61 Aligned_cols=102 Identities=26% Similarity=0.569 Sum_probs=90.7
Q ss_pred CCCCCchHhHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 047293 2 SSAQDPFYIVKEEIQDSINKLQSTFHQWENSAS-----DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGI 76 (246)
Q Consensus 2 ~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~-----~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~i 76 (246)
||..|||+.+++||.++++.+++.|.+|..+.. +++++.+++.+|+..|..|+++|++|++++.++++||.+|+|
T Consensus 23 ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l 102 (130)
T 4dnd_A 23 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL 102 (130)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC
Confidence 346799999999999999999999999987543 235899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 77 DDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 77 s~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
++.|+.+|+.||..++.++++|+..++
T Consensus 103 ~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 103 PAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
No 2
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=120.96 Aligned_cols=76 Identities=30% Similarity=0.370 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccch
Q 047293 150 SDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQ 225 (246)
Q Consensus 150 ~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~ 225 (246)
.+.|++++++||+.|+.|+.+|.+||++|.+||+||+.||++||+++++||++..+|..+++|+.+++++++++|+
T Consensus 7 ~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~q 82 (82)
T 2nps_D 7 MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQ 82 (82)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 3678899999999999999999999999999999999999999999999999999999999999999999887763
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=5e-16 Score=104.56 Aligned_cols=64 Identities=31% Similarity=0.471 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
++|++||+.|+.|+.+|.+||++|.+||+||+.||.+||+++++||++..+|..+++|+.++++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999999999999999999999999999998763
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.62 E-value=6.8e-15 Score=108.97 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchh
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQI 226 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~ 226 (246)
..++++++++..|+.++..|+++|.+++..|.+|++++|+|+++++.+..+++.|++.+.++.+++++.++|
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 457899999999999999999999999999999999999999999999999999999999997766544333
No 5
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.56 E-value=5.8e-15 Score=126.20 Aligned_cols=217 Identities=14% Similarity=0.208 Sum_probs=140.2
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhc-----c-CCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047293 5 QDPFYIVKEEIQDSINKLQSTFHQWENS-----A-SDP-----GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSW 73 (246)
Q Consensus 5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l-----~-~~~-----~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k 73 (246)
.+.|+..+++|...|..+...+.+...+ . ++. .++..++.++......+...|+.|+..+...+.
T Consensus 30 m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~---- 105 (267)
T 1dn1_B 30 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG---- 105 (267)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence 4669999999999999999887765542 2 221 246667788888888888888888887653221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhh-hhhhcCCCCCCC--ccchhhhccCChh-H----
Q 047293 74 YGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMR-RELMRLPNSHQA--KSNQYAAAQDNDD-F---- 145 (246)
Q Consensus 74 ~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r-~~l~~~~~~~~~--~~~~~~~~~~n~~-~---- 145 (246)
..-++.+.+.|++.+..|..++.++...|+..+..|. ...+.| ...+...+|.++ .++..+ +.++.. |
T Consensus 106 ~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~---e~~k~~i~Rq~~i~~~~~tdeeie~~i-e~g~~~~f~q~~ 181 (267)
T 1dn1_B 106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYR---ERCKGRIQRQLEITGRTTTSEELEDML-ESGNPAIFASGI 181 (267)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCCHHHHHHHH-HTCSSCTTTTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhhccCCCCCHHHHHHHH-hCCcHHHHHHHH
Confidence 1335678899999999999999999999997654332 111111 112232222222 222222 222222 2
Q ss_pred h-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcccc
Q 047293 146 I-QSES-DRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAK 223 (246)
Q Consensus 146 ~-~~~~-~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~ 223 (246)
+ +... ...-..++++++.+..|+.+|..|+++|.+|+..|.+|+++||+|+++|+.|..++..|...+.++.++++..
T Consensus 182 l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~ 261 (267)
T 1dn1_B 182 IMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 261 (267)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111 1223468899999999999999999999999999999999999999999999999999999999999988766
Q ss_pred chhHHH
Q 047293 224 GQIMMI 229 (246)
Q Consensus 224 ~~~~~i 229 (246)
++|.||
T Consensus 262 rkk~~~ 267 (267)
T 1dn1_B 262 RRKKIM 267 (267)
T ss_dssp ------
T ss_pred cCcccC
Confidence 666554
No 6
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.55 E-value=2.3e-14 Score=96.68 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
+.++||+.|+.|+.+|.+||++|.+||.||+.|+.+||+|++.||++..+|..+++|+.+++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999999999999999999999999999999999999875
No 7
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.53 E-value=3.2e-14 Score=101.02 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
.+.++||+.|+.|+.+|.+||++|.+||.||+.||++||+|+++||++..+|..+++|+.+++++
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 44679999999999999999999999999999999999999999999999999999999998764
No 8
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.46 E-value=1.1e-13 Score=98.06 Aligned_cols=64 Identities=17% Similarity=0.370 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
..++||+.|+.|+..|.+||++|.+||.||+.||++||+|++.||++..+|..+++|+++++++
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999999999999999999999999999999999999999999999999998753
No 9
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.45 E-value=3.6e-13 Score=96.82 Aligned_cols=90 Identities=20% Similarity=0.351 Sum_probs=79.5
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHH
Q 047293 4 AQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEK 83 (246)
Q Consensus 4 ~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~ 83 (246)
+.|||+.+++++.++|..++..+.++. ..++ .+...+++..+..|+++|.||++++.+++++ +++|+.+
T Consensus 4 s~DPF~~V~~D~~~ql~~l~~~~~~~~-~~~~----~~~~~El~~~l~el~e~l~DL~~SI~i~e~~------~~~EI~~ 72 (95)
T 2c5k_T 4 SEDPFQQVVKDTKEQLNRINNYITRHN-TAGD----DDQEEEIQDILKDVEETIVDLDRSIIVMKRD------ENEDVSG 72 (95)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTC-CC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTCCCHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHcc-CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHH
Confidence 459999999999999999999988752 2222 4888999999999999999999999999965 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 047293 84 RRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 84 R~~~v~~l~~~~~~l~~~~~~ 104 (246)
|+.+|..++++++.|+..|+.
T Consensus 73 Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 73 REAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999874
No 10
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1e-12 Score=87.41 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
+.+++|+.|+.|+..+++||++|.+||.||+.||++||+|+..+|++..++..+++|+.+
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999986
No 11
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.38 E-value=1.2e-13 Score=118.88 Aligned_cols=213 Identities=11% Similarity=0.139 Sum_probs=127.8
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhcc------CC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSA------SD-------PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPS 72 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~------~~-------~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~ 72 (246)
+.|+...++|...|..+...+.+...+. +. ..++..++.+|...+..+...|+.|+..+......|+
T Consensus 44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~ 123 (279)
T 2xhe_B 44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT 123 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3499999999999999999887766531 11 1235567777777778888888888776654332211
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhh-hhhhcCCCCCCC--ccchhhhccCChh-Hhh
Q 047293 73 WYGIDDI-ELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMR-RELMRLPNSHQA--KSNQYAAAQDNDD-FIQ 147 (246)
Q Consensus 73 k~~is~~-El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r-~~l~~~~~~~~~--~~~~~~~~~~n~~-~~~ 147 (246)
+...++. |.+.|++.+..|..++.++...|+..+..|. ...+.+ ...+...++..+ ..+..+ ..++.. |..
T Consensus 124 ~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~---e~~k~~~~R~~~i~~~~~~~ee~~~~~-e~g~~~~f~q 199 (279)
T 2xhe_B 124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENK---RRYGENVARQCRVVEPSLSDDAIQKVI-EHGTEGIFSG 199 (279)
T ss_dssp CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTTTSCCSSCCCCSSTTHHHHH-HHC-------
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCHHHHHHHH-hCCchHHHHH
Confidence 1112232 7789999999999999999999987554321 001100 111122111111 122222 111111 211
Q ss_pred hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccc
Q 047293 148 SES---DRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASA 222 (246)
Q Consensus 148 ~~~---~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~ 222 (246)
... ......++++++.+..|..+|..|++||.+|+..|.+|+++||+|+++|+.|..+++.|...|.++.++++.
T Consensus 200 ~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~ 277 (279)
T 2xhe_B 200 MRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES 277 (279)
T ss_dssp ----------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 000 001124678899999999999999999999999999999999999999999999999999999999887764
No 12
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.26 E-value=4.3e-11 Score=82.94 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMI 229 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i 229 (246)
.++++++.+..|..+|..|+++|.+|+..|.+|+++||+|+++|+.|...++.|...+.++.+++++.++++||
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 57788999999999999999999999999999999999999999999999999999999999977765555443
No 13
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.13 E-value=4.3e-10 Score=76.64 Aligned_cols=68 Identities=9% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchh
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQI 226 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~ 226 (246)
++++.+..|..+|..|+++|.+|+..|.+|+++||+|+++|+.|...+..|...|.++.++.++.++|
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 56789999999999999999999999999999999999999999999999999999999988766554
No 14
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.02 E-value=4e-09 Score=71.34 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
.++++.+.+..|..+|..|+++|.+++..|.+|+++||+|+++|+.|..+++.|...+.++.+++
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 68 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788999999999999999999999999999999999999999999999999999999998864
No 15
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.98 E-value=6e-09 Score=73.07 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccc
Q 047293 155 LLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASA 222 (246)
Q Consensus 155 ~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~ 222 (246)
..++++.+.+..|..+|..|+++|.+|+..|.+|+++||+|+++|+.|..+++.|...+.++.++.++
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 46889999999999999999999999999999999999999999999999999999999999998764
No 16
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.90 E-value=6.7e-09 Score=69.36 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
.++++.+.+..|..+|..|+++|.+++..|.+|+++||+|+++|+.|..++..|...+.++.
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46678899999999999999999999999999999999999999999999999999998764
No 17
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=98.89 E-value=1.9e-08 Score=67.81 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
.++++.+.+..|..+|..|+++|.+++..|.+|+++||+|+++|+.|..+++.|...+.++.
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999999999999999999999999999999999999999999998864
No 18
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=98.35 E-value=4.3e-07 Score=76.77 Aligned_cols=218 Identities=12% Similarity=0.177 Sum_probs=124.0
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhc-------cCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047293 5 QDPFYIVKEEIQDSINKLQSTFHQWENS-------ASDP----GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSW 73 (246)
Q Consensus 5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l-------~~~~----~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k 73 (246)
.+.|+...++|...|..+...+++...+ +... .....+..++......+...+..++......+.
T Consensus 42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~---- 117 (279)
T 3c98_B 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG---- 117 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 4558899999999999998887765432 1111 234556666777777777766666666554432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCCCccc---hhhhccCC---hhHh-
Q 047293 74 YGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSN---QYAAAQDN---DDFI- 146 (246)
Q Consensus 74 ~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~---~~~~~~~n---~~~~- 146 (246)
.+-...+++.+.+....|...+..+...|......+. ..-...-+.+.....+.+.... ....+... ....
T Consensus 118 i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~--~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (279)
T 3c98_B 118 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYR--ERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIM 195 (279)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCS
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHH
Confidence 1223567888888888888887777766654332110 0000000112111111111000 00000000 0000
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccch
Q 047293 147 -QSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQ 225 (246)
Q Consensus 147 -~~~~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~ 225 (246)
..........+++....+..|...|..+.+++.+|...+++|+.++++|+.+|+.+...+..+...+.++.++++..++
T Consensus 196 ~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rk 275 (279)
T 3c98_B 196 DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 275 (279)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0001123345778889999999999999999999999999999999999999999999999999999999888776555
Q ss_pred hHH
Q 047293 226 IMM 228 (246)
Q Consensus 226 ~~~ 228 (246)
|-|
T Consensus 276 kk~ 278 (279)
T 3c98_B 276 KKI 278 (279)
T ss_dssp ---
T ss_pred cCc
Confidence 544
No 19
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.33 E-value=2.5e-07 Score=74.98 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=101.2
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhc-----c-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENS-----A-SDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDI 79 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l-----~-~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~ 79 (246)
..|+..+++|...|..+...+.+...+ . +...+-..+..+|......+......+...|+.++..+.
T Consensus 5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------- 77 (196)
T 1fio_A 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------- 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-------
Confidence 349999999999999999887776542 2 222221234444444444444445555555554443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhh--hhhhcCCCCCCC-ccchhhhccCChhHhhhH-------
Q 047293 80 ELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMR--RELMRLPNSHQA-KSNQYAAAQDNDDFIQSE------- 149 (246)
Q Consensus 80 El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r--~~l~~~~~~~~~-~~~~~~~~~~n~~~~~~~------- 149 (246)
+.+.|+..+..|..++.++...|+..+..|. ...+.+ +.+.-..+..+. ..+..+...++..+....
T Consensus 78 ~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~---~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~ 154 (196)
T 1fio_A 78 HDTNKQAQAENSRQRFLKLIQDYRIVDSNYK---EENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRR 154 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHHHHHhccch
Confidence 2377999999999999999999987665432 111111 111111111111 111111001111221100
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 150 --SDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQE 189 (246)
Q Consensus 150 --~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~ 189 (246)
...--..++++++.+..|..+|..|++||.+|+..|.+|+
T Consensus 155 ~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 155 GEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0011235789999999999999999999999998887764
No 20
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=97.59 E-value=0.0015 Score=48.67 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=76.0
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHh-----cc-CCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWEN-----SA-SDP-----GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWY 74 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~-----l~-~~~-----~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~ 74 (246)
+.|+..+++|+..|..+...+.+... +. +.. .++..+..+|......+...|+.|+......+..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~---- 83 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL---- 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 45999999999999999998877654 22 211 2456778888888889999999998877654321
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047293 75 GIDDIELEKRRRWTSTARTQVSSMKKAVLSGG 106 (246)
Q Consensus 75 ~is~~El~~R~~~v~~l~~~~~~l~~~~~~~~ 106 (246)
+-++.+.+.|++.+..|..++.+++..|+..+
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q 115 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQ 115 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567789999999999999999999998644
No 21
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=97.29 E-value=0.002 Score=51.20 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=75.8
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhc-----cCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENS-----ASD------PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYG 75 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l-----~~~------~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~ 75 (246)
.|+..+++|...|..+...+.+...+ ... ..++..+..++....+.+...|+.|+..... ++.. +
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~---~~~~-~ 115 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQ---EEHS-N 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcc-C
Confidence 49999999999999999987776542 111 1346678888888999999999999887653 3322 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 047293 76 IDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGV 110 (246)
Q Consensus 76 is~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~ 110 (246)
.++.+.+.|++.+..|.+++.++...|+..+..|.
T Consensus 116 ~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 116 KSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999998776554
No 22
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.23 E-value=0.016 Score=42.08 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIAL 235 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~ 235 (246)
-+.+-...+.+|++....+..+-..=|+.++.=..-++....+++.+...+.+|.+.=++..+ |++||++++++++
T Consensus 22 eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~i~~ 97 (109)
T 3hd7_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCVILG 97 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHHHHH
Confidence 455666677777777777777777777777777777788999999999999998866544433 5567776655554
Q ss_pred HHHHHHHH
Q 047293 236 FIVLFVLV 243 (246)
Q Consensus 236 ~i~l~~~~ 243 (246)
+++.+++.
T Consensus 98 ~i~~~~~~ 105 (109)
T 3hd7_B 98 IIIASTIG 105 (109)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 44444443
No 23
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.12 E-value=0.01 Score=41.76 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhH
Q 047293 165 DELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSN 204 (246)
Q Consensus 165 ~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~ 204 (246)
..+...|.+.+.+-..=-+.+-+-++-||.+.+..+....
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3333444444443333333444455566666655554444
No 24
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.44 E-value=0.081 Score=36.04 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASV---QRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v---~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
..++....-.++.++.+...+ ..-.++|..+-.+|..|++.|++++..++.....|..+.+.|+.+
T Consensus 9 ~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m 77 (79)
T 1n7s_C 9 EMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhh
Confidence 445555556666665555554 577789999999999999999999999999999999999888765
No 25
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.49 E-value=0.12 Score=32.38 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHH
Q 047293 169 ASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVA 214 (246)
Q Consensus 169 ~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~ 214 (246)
..+..-.++|..+-.+|..|++.|++++.+++.....|+.+.+.+.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 4456677889999999999999999999999999999999988775
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.60 E-value=0.53 Score=31.15 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 170 SVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 170 ~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
....-.+.|..--.++..|++.|++++.++|.....++.|.++++.+-.
T Consensus 20 ~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 20 MAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566888888899999999999999999999999999999987643
No 27
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.37 E-value=0.7 Score=31.42 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
++.-...|..-...+.+-.++|..|-.+|..|.+-|-.....++.+++.+..+.+-++.+.++-
T Consensus 14 L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 14 LERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 4455567778888888999999999999999999999999999999999999999999988753
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.23 E-value=0.16 Score=34.90 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHH
Q 047293 151 DRQLLLVKQQDEELDELSASV---QRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVA 214 (246)
Q Consensus 151 ~~Q~~~~~~qD~~l~~l~~~v---~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~ 214 (246)
..++++..-.++.++.....+ ..-++.|..--.+|..|++.|++++.++|.....|+.|-+.+.
T Consensus 13 ~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 13 EIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666665554444 5566688889999999999999999999999999988877654
No 29
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.21 E-value=0.008 Score=44.45 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhHHhHhH
Q 047293 186 VAQENIIDELGTEMDSTSN 204 (246)
Q Consensus 186 ~~Q~~lLd~i~~~v~~~~~ 204 (246)
-+-++-||++.+..+....
T Consensus 57 LeRGEkLd~L~~KTe~L~~ 75 (119)
T 2kog_A 57 LERDQKLSELDDRADALQA 75 (119)
T ss_dssp HCCCCSSCCCCSCCSCCCS
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 3446666777666655443
No 30
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.20 E-value=0.26 Score=32.12 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVM 217 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~ 217 (246)
.+.|..-...+.+-.++|..+-.+|..|.+-|......++.++..+.++.+-|+.+.
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 345666667778889999999999999999999999999999999999998887653
No 31
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=90.25 E-value=1.8 Score=30.94 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047293 35 DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSG 105 (246)
Q Consensus 35 ~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~~ 105 (246)
.+-.+.++..+|...=.+|..--..|+..-..++.+|... ...-+.+|+..|..|..++.+++..+...
T Consensus 20 ~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDev--NK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 20 GSMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDEL--NKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888777777777777777778888898654 35668999999999999999999988653
No 32
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=90.16 E-value=3.7 Score=29.02 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=52.3
Q ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHH
Q 047293 3 SAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELE 82 (246)
Q Consensus 3 ~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~ 82 (246)
|+++.|.....+.......+...+.+...+ ++.+-.....++...+..+..-|.+++-.++. +++..-.
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~---------~p~~~R~ 70 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVRE---------IPPQSRG 70 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SCTTTHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHhHH
Confidence 344566666666666666666666654433 23344455566777777777777777666552 2333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 047293 83 KRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 83 ~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
.=..-|...+++++.++..+..
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777777766654
No 33
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.82 E-value=2.2 Score=30.12 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 38 EQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 38 ~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
++.++..+|...=.+|..--..|+.+-..++.+|+. +...-+++|+..|+.+..++.+++..+..
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDe--vNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDD--VNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555555556666677777788864 33566899999999999999999998753
No 34
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=88.87 E-value=3.3 Score=27.78 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 38 EQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 38 ~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
++.++..+|...=.+|..--..|+..-..++.+|+.. ...-+.+|+..|..|..++.+++..+..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev--NK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV--NKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666667777777777888643 3566899999999999999999998753
No 35
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=85.78 E-value=5.3 Score=27.81 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293 38 EQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104 (246)
Q Consensus 38 ~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~~ 104 (246)
++.++..+|...=.+|..--..|+..-..++.+|... ...-+.+|+..|..|..++.+++..+..
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev--Nk~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV--NKSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666667777777777888643 3566899999999999999999998864
No 36
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=72.24 E-value=22 Score=26.52 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=58.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHH------
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIEL------ 81 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El------ 81 (246)
-..-+++++..+..++...-.|.- .|. ......+...|..+..+|..|+..+....- .+.++=+.||
T Consensus 26 LvtkVDDLQD~VE~LRkDV~~Rgv-rP~----~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP--~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 26 LLSKVDDLQDVIEIMRKDVAERRS-QPA----KKKLETVSKDLENAQADVLKLQEFIDTEKP--HWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHHH
Confidence 345566777777777777666643 333 344557788888899999999999886542 2222333443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Q 047293 82 ----EKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 82 ----~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.-..+++.+|...+..+...|.
T Consensus 99 Qqfl~~QedL~~DL~eDL~ka~etf~ 124 (141)
T 3okq_A 99 QQFLTLQEELILDLKEDLGKALETFD 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888887777775
No 37
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=71.43 E-value=22 Score=24.38 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=13.3
Q ss_pred HHhhhHHhHhHHHHHHHHHHHHHHH
Q 047293 194 ELGTEMDSTSNRLDFVQKKVAMVMK 218 (246)
Q Consensus 194 ~i~~~v~~~~~~l~~~~~~l~~~~~ 218 (246)
+--+++......-.+..+++++-+-
T Consensus 40 ~kt~~L~~~s~~F~~~A~~l~rkmw 64 (91)
T 3hd7_A 40 DRADALQAGASQFETSAAKLKRKYW 64 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556666666666544
No 38
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.90 E-value=28 Score=25.44 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=58.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHH
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWENS----ASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEK 83 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~l----~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~ 83 (246)
|......|...|..+...+.....+ .. +.+...+...|......+...+++....|..+..-+. ..++.+=+.
T Consensus 12 f~~l~~~is~~I~~In~~vs~l~r~v~~LGT-~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~--~~~~~~~r~ 88 (130)
T 2dnx_A 12 FSSIIQTCSGNIQRISQATAQIKNLMSQLGT-KQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL--PLSTSEQRQ 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccchHHH
Confidence 9999999999999999887766552 21 1122333344444444444444444444443332110 124555577
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Q 047293 84 RRRWTSTARTQVSSMKKAVLSGG 106 (246)
Q Consensus 84 R~~~v~~l~~~~~~l~~~~~~~~ 106 (246)
++-....|.+++......|...+
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Q 111 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQ 111 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999998888887654
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.16 E-value=28 Score=23.20 Aligned_cols=49 Identities=12% Similarity=0.010 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHH
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFV 209 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~ 209 (246)
++.|+.|+..+.-+-..-..+++.|-.|...||.+...+.....++...
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777888888888888888887777777766543
No 40
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=60.80 E-value=2.8 Score=30.60 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=10.5
Q ss_pred HHhhhHHhHhHHHHHHHHHHHHH
Q 047293 194 ELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 194 ~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
+--+++......-.+..+++++-
T Consensus 68 ~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 68 DRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp SCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555443
No 41
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=60.02 E-value=55 Score=24.93 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHH
Q 047293 157 VKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQ 210 (246)
Q Consensus 157 ~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~ 210 (246)
.+-.+-....|.+.+-.+..+|..+-+.++.|..-+..++..|......+.-=.
T Consensus 49 eeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~ 102 (159)
T 3p8c_F 49 EETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHK 102 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567899999999999999999999999999999999998887664433
No 42
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=59.43 E-value=42 Score=23.40 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRR 85 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~ 85 (246)
+.|.....+.......+...+.+..... ++.+-.....++...+..+..-|++++-.++ ++++..-..=.
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r---------~~p~s~R~~~~ 84 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELR---------YAPLTFRNPMM 84 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCHHHHHHHH
Confidence 3455556666666666666666543321 2233344555666666666666666665554 34555433334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047293 86 RWTSTARTQVSSMKKAV 102 (246)
Q Consensus 86 ~~v~~l~~~~~~l~~~~ 102 (246)
.-|...+++++.++..|
T Consensus 85 ~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 85 SKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44556666666665543
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.72 E-value=39 Score=22.45 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 162 EELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 162 ~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
..++.+...+.....-+.....||..-++-+..+++++|.+..++..++.++...-+.
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677888899999999999999999999999999999998776443
No 44
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.53 E-value=32 Score=21.19 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=35.1
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
.||......+.+.+..+...+....+... .....-+.+...++.+...+..++..+.
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFL---KAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998777665544110 1122333444556666666666655443
No 45
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=55.73 E-value=30 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 39 QVHLKKELLAGCESIEWQVDELDKAI 64 (246)
Q Consensus 39 ~~~~~~ei~~~i~~l~~~l~~L~~~l 64 (246)
+...+.+|-..+......|++|++++
T Consensus 22 Fq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 22 FQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 45666778888888888888888765
No 46
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=55.73 E-value=52 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=11.0
Q ss_pred CCCHH---HHHHHHHHHHHHHHHH
Q 047293 75 GIDDI---ELEKRRRWTSTARTQV 95 (246)
Q Consensus 75 ~is~~---El~~R~~~v~~l~~~~ 95 (246)
.+.|. ++..|-..+..|.++.
T Consensus 118 e~DP~rL~~ie~RL~~l~~L~RKy 141 (175)
T 4abx_A 118 AADPEALDRVEARLSALSKLKNKY 141 (175)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45565 4555555555554443
No 47
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=51.29 E-value=50 Score=21.82 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=43.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENS-ASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASR 69 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l-~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~ 69 (246)
+|......+.+.+..+...+.+-... ...+..+..++..+...+..+...+.++-.-++.+++
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~leA 76 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Confidence 57777778888887777777776653 2334456777777777777777777777666665543
No 48
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=45.86 E-value=4.3 Score=29.71 Aligned_cols=9 Identities=44% Similarity=0.637 Sum_probs=5.0
Q ss_pred CCCHHHHHH
Q 047293 75 GIDDIELEK 83 (246)
Q Consensus 75 ~is~~El~~ 83 (246)
++|.+|+..
T Consensus 16 gltq~elA~ 24 (130)
T 3fym_A 16 GMTLTELEQ 24 (130)
T ss_dssp TCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 466665554
No 49
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.50 E-value=41 Score=19.21 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 74 YGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 74 ~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.+++|+|+..-..-+..|.+++..+++.+.
T Consensus 15 egfspeelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999888888888888888887664
No 50
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.10 E-value=75 Score=23.05 Aligned_cols=36 Identities=3% Similarity=0.028 Sum_probs=32.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047293 34 SDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASR 69 (246)
Q Consensus 34 ~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~ 69 (246)
.+++++..+...|-..|..|...+..|++.+..+..
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT 42 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGT 42 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999998874
No 51
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=42.59 E-value=80 Score=21.66 Aligned_cols=83 Identities=8% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHH
Q 047293 12 KEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTA 91 (246)
Q Consensus 12 ~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l 91 (246)
..+.......+...+.+...+ ++.+-.....++...+..+..-|.+++-.++.+.. ++..-..=..-|...
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~-------p~~~R~~~~~klr~Y 77 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIG-------DASERATYKAKLREW 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHH
Confidence 334444444455444433322 23344555667777777777777777776664320 333323333334455
Q ss_pred HHHHHH-HHHHHH
Q 047293 92 RTQVSS-MKKAVL 103 (246)
Q Consensus 92 ~~~~~~-l~~~~~ 103 (246)
+++++. ++..+.
T Consensus 78 k~dl~~~lk~~lk 90 (97)
T 3onj_A 78 KKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 555555 555443
No 52
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.80 E-value=60 Score=19.97 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047293 37 GEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVS 96 (246)
Q Consensus 37 ~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~ 96 (246)
+.+..+.++++..+..+..+.+.|.+++. +|-+.|+.+=.-+++-++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE-------------eEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE-------------EEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHh
Confidence 35678888999999999999999888774 555666665444444433
No 53
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=39.89 E-value=30 Score=19.23 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 047293 223 KGQIMMILFLIALFIVLFVLVF 244 (246)
Q Consensus 223 ~~~~~~i~~li~~~i~l~~~~~ 244 (246)
++.|..++++-+++++.++.+|
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHH
Confidence 4445444444444444444443
No 54
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.67 E-value=53 Score=17.91 Aligned_cols=16 Identities=13% Similarity=0.638 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 047293 229 ILFLIALFIVLFVLVF 244 (246)
Q Consensus 229 i~~li~~~i~l~~~~~ 244 (246)
+++|+..+.+|++.+|
T Consensus 7 t~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 7 VFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444445554444
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.53 E-value=2.6e+02 Score=25.18 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHcc
Q 047293 159 QQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKAS 221 (246)
Q Consensus 159 ~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~ 221 (246)
.....+......+...+.....+..|++.-.+.++.....+......+...+.+++.+.++..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333455666666777777777777777777777777777777777777778888888777544
No 56
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=34.03 E-value=83 Score=19.87 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHcc-ccchhHHHHHHHHHHHHHHH
Q 047293 203 SNRLDFVQKKVAMVMKKAS-AKGQIMMILFLIALFIVLFV 241 (246)
Q Consensus 203 ~~~l~~~~~~l~~~~~~~~-~~~~~~~i~~li~~~i~l~~ 241 (246)
-..++.+..+++|+.=-++ .-.....+++.+++++.+++
T Consensus 5 ~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i 44 (65)
T 3din_D 5 RKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYF 44 (65)
T ss_dssp -----CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445566667776654322 22333444444444444443
No 57
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=33.68 E-value=1.8e+02 Score=24.13 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 174 IGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 174 l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
|..+..++++....=.++..+|..++..+..++.....|+.++..+
T Consensus 34 L~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~ 79 (279)
T 3p8c_D 34 LANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVS 79 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555666777777777777777777777776543
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.63 E-value=1.3e+02 Score=20.79 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHH
Q 047293 164 LDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMV 216 (246)
Q Consensus 164 l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~ 216 (246)
.+.+...+.....-+.....||..-++-+..+++++|.+...+..+..++...
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777777777777777777777777666554
No 59
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.79 E-value=83 Score=18.36 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 40 VHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 40 ~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
.....++.+.|..++.+|+.|...+.
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888888888877765
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.07 E-value=3e+02 Score=24.62 Aligned_cols=93 Identities=6% Similarity=0.041 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHh-----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047293 6 DPFYIVKEEIQDSINKLQSTFHQWEN-----------SASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWY 74 (246)
Q Consensus 6 Dpf~~~~~ev~~~l~~l~~~~~~~~~-----------l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~ 74 (246)
|-+......|++.|..|+..+++... +...-........+....++.....|+.....++.+-..+
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~--- 165 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNN--- 165 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH---
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 75 GIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 75 ~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
-+..++.-+..+..++.++..+...+.
T Consensus 166 --~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 166 --IPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.68 E-value=2.8e+02 Score=24.13 Aligned_cols=24 Identities=0% Similarity=0.021 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 80 ELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 80 El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
.|+.-+..|.+++.+++.|...+.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777663
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.47 E-value=1.8e+02 Score=21.85 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHc
Q 047293 161 DEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKA 220 (246)
Q Consensus 161 D~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~ 220 (246)
...+..|......+..--.+...|+...+..++.+.+.+...+..+..+..++.++-..+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777888889999999999999999999998888888888876644
No 63
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.34 E-value=1.3e+02 Score=20.12 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 44 KELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 44 ~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
..|...|..++..+..|+..+. +|.-|.-+...+..-..-+..+..++..+...+.
T Consensus 25 e~le~~Ie~LE~~i~~le~~la----dp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVA----DASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666553 5654444567777666667777777777766553
No 64
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=28.73 E-value=1.5e+02 Score=20.60 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 156 LVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDE 194 (246)
Q Consensus 156 ~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~ 194 (246)
-.++.|..|..|.+.|..++++-..+.+--.+|+-++-.
T Consensus 67 kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~s 105 (115)
T 1ezj_A 67 KVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMS 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 467888999999999999998888877777777776643
No 65
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=27.37 E-value=1.5e+02 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047293 79 IELEKRRRWTSTARTQVSSM 98 (246)
Q Consensus 79 ~El~~R~~~v~~l~~~~~~l 98 (246)
.|+..-..-+..|+.++.++
T Consensus 63 ~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 63 LLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 66
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.15 E-value=1.6e+02 Score=20.36 Aligned_cols=55 Identities=5% Similarity=0.157 Sum_probs=28.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAI 64 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l 64 (246)
-.....+|+..+..+..++.+-.--..+-+ ......+...++..+.+|+.|+..+
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r~~p--~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELRYAP--LTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455566666666655555332111111 2334566677777777777766543
No 67
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=27.09 E-value=42 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 047293 224 GQIMMILFLIALFIVLFVLVFL 245 (246)
Q Consensus 224 ~~~~~i~~li~~~i~l~~~~~~ 245 (246)
-.||+++|++.|++.++++++|
T Consensus 55 p~ww~~~f~~~iv~~~~y~~~y 76 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLVLY 76 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4578887777777777777655
No 68
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.66 E-value=2.4e+02 Score=22.44 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 45 ELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAV 102 (246)
Q Consensus 45 ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~~~ 102 (246)
..+..+..++..++..+..+...+.-..+..+|..++...+..+...+.++...+..+
T Consensus 64 ~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l 121 (277)
T 2f1m_A 64 SAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAV 121 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444334456888888888888777776666555544
No 69
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=26.47 E-value=1.8e+02 Score=21.67 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=34.2
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWENS-ASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASR 69 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~l-~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~ 69 (246)
+|......+.+.+..+...+.+-... ...+..+..+...+...+..+...+.++-.-++.+++
T Consensus 26 sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leA 89 (149)
T 1wyy_A 26 QFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 89 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555666666655555555442 2223345556666666666666666555555555544
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.18 E-value=3.8e+02 Score=24.46 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 21 KLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKK 100 (246)
Q Consensus 21 ~l~~~~~~~~~l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~El~~R~~~v~~l~~~~~~l~~ 100 (246)
.|+.+|.+... ++....++||+.+.++...=.+.+..+..+. ++|+.|.....+..+.+.++..
T Consensus 50 rLQglLdkqEr------DltkrINELKnqLEdlsKnsKdseqy~k~~~----------E~Lr~rq~q~~dNdNtynE~S~ 113 (562)
T 3ghg_A 50 RMKGLIDEVNQ------DFTNRINKLKNSLFEYQKNNKDSHSLTTNIM----------EILRGDFSSANNRDNTYNRVSE 113 (562)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----------HTTSSHHHHHHHHHHHHHHTTH
T ss_pred chhhhHHhhcC------cHHHHHHHHHHHHHHHHhhchhHHHHHHHHH----------HHHHHHHHhhhccchhHHHHHH
Q ss_pred HHHcCCCCCCCCccchhhhhhhhcCCCCCCCccchhhhccCChhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 101 AVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLT 180 (246)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~Q~~~~~~qD~~l~~l~~~v~~l~~~~~~ 180 (246)
.++ +.+..|...|......=..
T Consensus 114 ELR----------------------------------------------------------RrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 114 DLR----------------------------------------------------------SRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHH----------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------------------------------------------------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 047293 181 IHDELVAQENIIDELGTEMD 200 (246)
Q Consensus 181 i~~el~~Q~~lLd~i~~~v~ 200 (246)
+..=|++|..-|.+|+-+||
T Consensus 136 LQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.04 E-value=2.6e+02 Score=22.50 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHH
Q 047293 154 LLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVA 214 (246)
Q Consensus 154 ~~~~~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~ 214 (246)
......--..|..|...+..++.-...+..++++-..-+..++.+++.+..++.+...++.
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 72
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.26 E-value=1.6e+02 Score=19.29 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHH
Q 047293 184 ELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKK 219 (246)
Q Consensus 184 el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~ 219 (246)
-+..|...|++++.-|..-+..+..-.+++..+.++
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444443
No 73
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.51 E-value=2e+02 Score=19.91 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=31.2
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 7 PFYIVKEEIQDSINKLQSTFHQWEN----SASDPGEQVHLKKELLAGCESIEWQVDELDKAIG 65 (246)
Q Consensus 7 pf~~~~~ev~~~l~~l~~~~~~~~~----l~~~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~ 65 (246)
|.-..++.++..+..+...+..+.. +...-.+-......+......++..|++|..+|-
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777666555443 1111112233444555666777777777776664
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.13 E-value=1.9e+02 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHH
Q 047293 165 DELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAM 215 (246)
Q Consensus 165 ~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~ 215 (246)
+.+...+.....-+.....|+..-..-+..+.+++|.+..++..+..++..
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555556666666666666555554443
No 75
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.99 E-value=1.4e+02 Score=18.09 Aligned_cols=18 Identities=0% Similarity=0.154 Sum_probs=10.3
Q ss_pred hhHHhHhHHHHHHHHHHH
Q 047293 197 TEMDSTSNRLDFVQKKVA 214 (246)
Q Consensus 197 ~~v~~~~~~l~~~~~~l~ 214 (246)
.++..+...-.+++.||.
T Consensus 32 ~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 32 SDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344456666666666654
No 76
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.45 E-value=1.3e+02 Score=17.41 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 78 DIELEKRRRWTSTARTQVSSMKKAV 102 (246)
Q Consensus 78 ~~El~~R~~~v~~l~~~~~~l~~~~ 102 (246)
..|+...+..+..++.++.++...-
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666777777776666543
No 77
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.23 E-value=3.5e+02 Score=24.16 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=44.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH--HHccCC
Q 047293 8 FYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAG--------------CESIEWQVDELDKAIG--VASRDP 71 (246)
Q Consensus 8 f~~~~~ev~~~l~~l~~~~~~~~~l~~~~~~~~~~~~ei~~~--------------i~~l~~~l~~L~~~l~--~~~~~~ 71 (246)
...-...|...|..|+..+++....+. +.......|+.. +++-...|++....++ +...
T Consensus 86 L~kye~~V~~dl~~Le~~l~~isn~Ts---~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~-- 160 (461)
T 3ghg_B 86 LLQQERPIRNSVDELNNNVEAVSQTSS---SSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSN-- 160 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTH--
T ss_pred HHhcccchhhHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcc--
Confidence 455567788888888888776654321 112222222222 2222223333222222 1000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293 72 SWYGIDDIELEKRRRWTSTARTQVSSMKKAVL 103 (246)
Q Consensus 72 ~k~~is~~El~~R~~~v~~l~~~~~~l~~~~~ 103 (246)
-+.-|+.-++.+..+++++..|+....
T Consensus 161 -----~~~~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 161 -----IPTNLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134466677777778888877777665
Done!