BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047294
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M72|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 115/291 (39%), Gaps = 25/291 (8%)
Query: 82 GYFRISLSLCSQALLWKLLGERPAQDAHXXXXXXXXXXXXXXXXXWSVALFTLTLLSLVY 141
GYF I L L + +L W H + A++ L +L Y
Sbjct: 12 GYFGIPLGLAALSLAW----------FHLENLFPAARMVSDVLGIVASAVWILFILMYAY 61
Query: 142 ILRCLFHFKMVQDEFLHHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPIL 201
LR ++F+ V+ E+ H V + F I +L + VL WI + L
Sbjct: 62 KLR--YYFEEVRAEY--HSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQL 117
Query: 202 VLD-VKIYGQWFTKGKRFVSVVANPTSQI-SVIGNLVAAKAAAQMGWGETAVCMFSLGMA 259
+ +++ W +G F +P+ + +V N +A + A +G+ + F GM
Sbjct: 118 LFSTLRVSELW--QGGVFEQKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMI 175
Query: 260 HYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV-GTFDNVAKIX-XXX 317
+++ L Q L SS L R + +A P + A+ +I G D +AKI
Sbjct: 176 AWIIFEPVLLQHLRISS-LEPQFRATMGIVLAPPFVCVSAYLSINHGEVDTLAKILWGYG 234
Query: 318 XXXXXXXXVSRPALFRKSMKKFSVTWWAYSFPLTVLA-LASAEYAQEVKSG 367
P + K + ++ WA+SFPL +A A+A Y V G
Sbjct: 235 FLQLFFLLRLFPWIVEKGL---NIGLWAFSFPLASMANSATAFYHGNVLQG 282
>pdb|3M76|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 25/291 (8%)
Query: 82 GYFRISLSLCSQALLWKLLGERPAQDAHXXXXXXXXXXXXXXXXXWSVALFTLTLLSLVY 141
GYF I L L + +L W H + A++ L +L Y
Sbjct: 12 GYFDIPLGLAALSLAW----------FHLENLFPAARMVSDVLGIVASAVWILFILMYAY 61
Query: 142 ILRCLFHFKMVQDEFLHHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPIL 201
LR ++F+ V+ E+ H V + F I +L + VL WI + L
Sbjct: 62 KLR--YYFEEVRAEY--HSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQL 117
Query: 202 VLD-VKIYGQWFTKGKRFVSVVANPTSQI-SVIGNLVAAKAAAQMGWGETAVCMFSLGMA 259
+ +++ W +G F +P+ + +V N +A + A +G+ + F GM
Sbjct: 118 LFSTLRVSELW--QGGVFEQKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMI 175
Query: 260 HYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV-GTFDNVAKIX-XXX 317
+++ L Q L SS L R + +A + A+ +I G D +AKI
Sbjct: 176 AWIIFEPVLLQHLRISS-LEPQFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYG 234
Query: 318 XXXXXXXXVSRPALFRKSMKKFSVTWWAYSFPLTVLA-LASAEYAQEVKSG 367
P + K + ++ WA+SF L +A A+A Y V G
Sbjct: 235 FLQLFFLLRLFPWIVEKGL---NIGLWAFSFGLASMANSATAFYHGNVLQG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,519,798
Number of Sequences: 62578
Number of extensions: 267927
Number of successful extensions: 533
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 9
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)