Query 047294
Match_columns 382
No_of_seqs 135 out of 898
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10764 potassium-tellurite e 100.0 2.2E-53 4.7E-58 418.9 29.6 289 74-380 4-294 (324)
2 TIGR00816 tdt C4-dicarboxylate 100.0 8.2E-51 1.8E-55 399.8 28.6 286 79-380 1-302 (320)
3 PF03595 SLAC1: Voltage-depend 100.0 2.3E-50 4.9E-55 397.0 28.1 291 77-381 1-318 (330)
4 COG1275 TehA Tellurite resista 100.0 1.5E-44 3.2E-49 354.9 29.2 292 74-381 4-300 (329)
5 PF03595 SLAC1: Voltage-depend 97.7 0.0059 1.3E-07 60.2 19.9 205 80-308 74-302 (330)
6 TIGR00816 tdt C4-dicarboxylate 97.6 0.029 6.4E-07 55.3 22.9 197 81-305 73-284 (320)
7 PRK10764 potassium-tellurite e 97.2 0.091 2E-06 52.1 21.7 190 83-304 83-275 (324)
8 COG1275 TehA Tellurite resista 97.1 0.15 3.3E-06 50.8 22.4 195 120-325 103-306 (329)
9 COG1966 CstA Carbon starvation 64.7 85 0.0018 33.6 11.6 55 192-246 4-82 (575)
10 PRK15015 carbon starvation pro 42.7 1.6E+02 0.0034 32.4 9.5 64 191-254 34-122 (701)
11 PF03839 Sec62: Translocation 35.9 1.4E+02 0.0031 28.2 7.1 56 80-148 106-164 (224)
12 PF07578 LAB_N: Lipid A Biosyn 34.2 65 0.0014 25.0 3.7 44 196-239 2-45 (72)
13 PF02554 CstA: Carbon starvati 32.5 5.6E+02 0.012 26.2 12.2 52 196-247 9-83 (376)
14 PHA00679 hypothetical protein 28.3 83 0.0018 23.2 3.3 40 305-347 27-66 (71)
15 PRK12657 putative monovalent c 26.4 3.7E+02 0.008 22.1 9.3 78 256-335 12-89 (100)
16 COG1113 AnsP Gamma-aminobutyra 23.6 7.5E+02 0.016 26.1 10.4 66 68-150 321-388 (462)
17 PF04246 RseC_MucC: Positive r 21.7 2.2E+02 0.0048 24.1 5.4 29 227-255 75-103 (135)
18 COG0534 NorM Na+-driven multid 21.5 8.3E+02 0.018 25.2 10.6 88 83-175 67-154 (455)
No 1
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=100.00 E-value=2.2e-53 Score=418.93 Aligned_cols=289 Identities=23% Similarity=0.335 Sum_probs=261.5
Q ss_pred hccccCChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q 047294 74 QILTSFHAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQ 153 (382)
Q Consensus 74 ~~l~~~~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~ 153 (382)
++++++|++||+++||++|+|++|+..++ .++.|+.++++++.+++++|+.++++|++|+++||++++
T Consensus 4 ~~~~~~p~~~f~~~mG~~gL~~~~~~~~~------------~~~~~~~i~~~~~~la~~l~~~l~~~~~~k~~~~p~~~~ 71 (324)
T PRK10764 4 DKVLPLPAGYFGIVLGLIGLGFAWRYAAQ------------LWPLPAWIGEALVALASIIWALLILAYLYKWIRFPESVL 71 (324)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHH------------HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 34689999999999999999999999876 678888999999999999999999999999999999999
Q ss_pred HHhcCccccccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhh
Q 047294 154 DEFLHHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIG 233 (382)
Q Consensus 154 ~el~hp~~~~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg 233 (382)
+|++||++++|++|++|+++++ ++...+.....+.++||+|+++++.+++.+++++++++ .+.+++||+|++|+||
T Consensus 72 ~el~hPv~~~f~~t~~ms~~ll--~~~~~~~~~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~--~~~~~~~PaW~ip~V~ 147 (324)
T PRK10764 72 AELRHPVQSSFVSLIPITTMLV--AIGLVPYSRPLAVVLFSFGVVGQLAFAAWRTAGLWRGG--HPEEATTPGLYLPTVA 147 (324)
T ss_pred HHHcCcchhhhhhHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccCChhhhhccch
Confidence 9999999999999999998775 55555666678899999999999999999888877653 4668999999999995
Q ss_pred H-HHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhC-ChhHHH
Q 047294 234 N-LVAAKAAAQMGWGETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIVG-TFDNVA 311 (382)
Q Consensus 234 ~-iV~a~ag~~l~~~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~g-~~~~~a 311 (382)
. ++++.+|+.+++++.++.+||+|+++|+++++++++|+.+++++|++++|+++|.+||+|++..||..+.+ ..|.++
T Consensus 148 ~~~v~~~a~~~~~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~~~~ 227 (324)
T PRK10764 148 NNFVSAMALGALGYHDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVNGGEGDTLA 227 (324)
T ss_pred hhhHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHcCcchhHHH
Confidence 5 79999999999999999999999999999999999999999999999999999999999999999999876 467899
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhcCCCcccceeeeechhHHHHHHHHHHHHHhChhhHHHHHHHHHHHh
Q 047294 312 KILFFLSLFLFLSLVSRPALFRKSMKKFSVTWWAYSFPLTVLALASAEYAQEVKSGNAQAMMLVLSALS 380 (382)
Q Consensus 312 ~~L~~~~l~~~~~~v~~~~~~~r~~~~F~~~wWAftFPl~~~a~at~~la~~~~~~~~~~l~~~l~~~~ 380 (382)
..+|++|++|+.+.+...++++|. ||+++|||||||++++++++.++++..+++.+++++.++.++.
T Consensus 228 ~~l~~~~l~~~~~~l~~~~~~~~~--~F~~swWAfTFPl~A~~~at~~l~~~~~~~~~~~la~~~~~~~ 294 (324)
T PRK10764 228 KMLFGYGLLQLLFLLRLMPWILSQ--GFNASFWSFSFGVAALATTGLHLGHGSDNGFFHTLAVPLFIFA 294 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CCCccHHHHccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999988766544444443 9999999999999999999999999999999999998877654
No 2
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=100.00 E-value=8.2e-51 Score=399.83 Aligned_cols=286 Identities=23% Similarity=0.223 Sum_probs=249.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcC
Q 047294 79 FHAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLH 158 (382)
Q Consensus 79 ~~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~h 158 (382)
|||+||+++||||++|++|+..++ .++.++.++++++++|+++|++++.+++.|+++||+++++|++|
T Consensus 1 f~p~wF~~vMgtg~~s~~~~~~~~------------~~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~~ 68 (320)
T TIGR00816 1 FPWGWFAIVLGTGGLALASLSYSF------------YLPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELKH 68 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 689999999999999999999876 34567899999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHHHH
Q 047294 159 HVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGNLVAA 238 (382)
Q Consensus 159 p~~~~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~iV~a 238 (382)
|++++|++|++|+++++. ......+...+.++||+++++++++++..++++++++ +.+.+++||+|++|+||+++++
T Consensus 69 p~~~~f~~t~~m~~~~l~--~~~~~~~~~~~~~lw~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~paw~lp~V~~~v~~ 145 (320)
T TIGR00816 69 PVLSSFIPLIPISTMLLG--IDFIIWGYPLALGLWYIGAIGQLLFSVIVPFYLFKNE-SIEIEHTHPGWYLPPVALIFIS 145 (320)
T ss_pred ChhhhhhhHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccccCCchhhhcccHHHHHH
Confidence 999999999999999873 3333334456788999999999999988888888764 4566889999999999999999
Q ss_pred HhhhhhcH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhC--ChhH-
Q 047294 239 KAAAQMGW---GETA---VCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIVG--TFDN- 309 (382)
Q Consensus 239 ~ag~~l~~---~~~~---~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~g--~~~~- 309 (382)
.+|+.+.. .+.. +.+||+|+++|+++++++++|+..++.+|++.+|++||.+||+|++++|+..+.+ ..+.
T Consensus 146 ~~~~~l~~~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~~~~~~~~~ 225 (320)
T TIGR00816 146 AAALAILPYLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIVNHGEFITI 225 (320)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHhhccchhhh
Confidence 99887642 2244 4459999999999999999999999999999999999999999999999999532 2233
Q ss_pred ------HHHHHHHHHHHHHHHHHH-hhHhhhhcCCCcccceeeeechhHHHHHHHHHHHHHhChhhHHHHHHHHHHHh
Q 047294 310 ------VAKILFFLSLFLFLSLVS-RPALFRKSMKKFSVTWWAYSFPLTVLALASAEYAQEVKSGNAQAMMLVLSALS 380 (382)
Q Consensus 310 ------~a~~L~~~~l~~~~~~v~-~~~~~~r~~~~F~~~wWAftFPl~~~a~at~~la~~~~~~~~~~l~~~l~~~~ 380 (382)
++.++|++|+||+++++. ..+..| .+.||+++|||||||+|++++|+.+++++.++++++.++.++..+.
T Consensus 226 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~F~~~wWA~tFPlg~~a~at~~l~~~~~~~~~~~~~~~~~~~~ 302 (320)
T TIGR00816 226 KEPFLILAIILWGFGLWQLLFAIRLLLWYVK-LKLPFAMGWWAFIFPLAAYANSTHLVYKGFDFKVFQYIGFGLYVFL 302 (320)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccHHHHcChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999998874 445544 3359999999999999999999999999999999999998877654
No 3
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=100.00 E-value=2.3e-50 Score=397.03 Aligned_cols=291 Identities=28% Similarity=0.412 Sum_probs=243.3
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHh
Q 047294 77 TSFHAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEF 156 (382)
Q Consensus 77 ~~~~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el 156 (382)
||+||+||+++||||++|++|+..++ ..+.++.++++++.+++++|+.++++++.|+++|||++++|+
T Consensus 1 k~~~~~~f~~~mGtg~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el 68 (330)
T PF03595_consen 1 KHFPPAWFGMVMGTGGLSNLLYLLPY------------HFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAEL 68 (330)
T ss_dssp --S-GGGGHHHHHHHHHHHHHHTTTT------------TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH------------hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 78999999999999999999999886 345678999999999999999999999999999999999999
Q ss_pred cCccccccccHHHHHHHHHHhcccCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhH
Q 047294 157 LHHVGVNYLFAPWISWLLLLQSSPFI--SPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGN 234 (382)
Q Consensus 157 ~hp~~~~f~~t~~ms~~ll~~~~~~~--~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~ 234 (382)
+||.++++++|++|+++++....... +.....+.++||+++++++.+.+.++++++.++ +.+.|++||+|++|+||+
T Consensus 69 ~~p~~~~f~~t~~m~~~~l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~p~w~lp~Vg~ 147 (330)
T PF03595_consen 69 RHPVRSSFFPTFPMALMLLAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQ-PFKLEHINPSWFLPPVGI 147 (330)
T ss_dssp HSTTGGGGGGHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-S-SS-GGG--GGGHHHHTHH
T ss_pred cCCcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccC-cccccccceeeeecchhH
Confidence 99999999999999999875433322 224568899999999999999999999888764 456678999999999999
Q ss_pred HHHHHhhhhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh
Q 047294 235 LVAAKAAAQMG----------WGETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV 304 (382)
Q Consensus 235 iV~a~ag~~l~----------~~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~ 304 (382)
++++.+|+.++ ..+.+.++||+|+++|+++.+++++|+..++.+|++++|++||.+||+|+++.|+..+.
T Consensus 148 ~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~ 227 (330)
T PF03595_consen 148 MVSAVAGANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLG 227 (330)
T ss_dssp HHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhc
Confidence 99999999987 46789999999999999999999999999999999999999999999999999999987
Q ss_pred C--------------ChhHHHHHHHHHHHHHHHHHHH-hhHhhhhcCCCcccceeeeechhHHHHHHHHHHHHHhChhhH
Q 047294 305 G--------------TFDNVAKILFFLSLFLFLSLVS-RPALFRKSMKKFSVTWWAYSFPLTVLALASAEYAQEVKSGNA 369 (382)
Q Consensus 305 g--------------~~~~~a~~L~~~~l~~~~~~v~-~~~~~~r~~~~F~~~wWAftFPl~~~a~at~~la~~~~~~~~ 369 (382)
+ ..+.++.++|+++++|++.++. ..+..|+. .||+++|||+|||++++++|+.+++++.+++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~F~~~~Wa~tFP~~~~a~at~~l~~~~~~~~~ 306 (330)
T PF03595_consen 228 KAAVAFPPHGQILRGVADLFALLLWGFALWWFFLALLSLIRYLRRR-LPFSPSWWAFTFPLGAFALATLKLAQYLGSPFF 306 (330)
T ss_dssp -------------TT---HHHHHHHHHHHHHHHHHHHHHHHHTTT------GGGGGGHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred ccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCcchhHHhChHHHHHHHHHHHHHHhccHHH
Confidence 4 2346889999999999998885 45555543 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 047294 370 QAMMLVLSALSV 381 (382)
Q Consensus 370 ~~l~~~l~~~~~ 381 (382)
++++.++.++++
T Consensus 307 ~~~~~~~~~~~~ 318 (330)
T PF03595_consen 307 RVLGLILLVLAT 318 (330)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 4
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=354.91 Aligned_cols=292 Identities=23% Similarity=0.330 Sum_probs=259.8
Q ss_pred hccccCChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q 047294 74 QILTSFHAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQ 153 (382)
Q Consensus 74 ~~l~~~~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~ 153 (382)
+++|+++++||+.+||||++|++|+.++. -+...+.++.++..++.++++++..+++.|+++||+.++
T Consensus 4 ~~~~~~~~~~f~~~mg~~~~gl~~~~~~~------------~~~~l~~~s~vl~~~~~~i~~l~~~~~i~k~i~y~~~~~ 71 (329)
T COG1275 4 DKIRNFPPSWFASVMGTGGLGLALGLFSF------------SFLLLRTLSYVLFYFALAIFFLLLIVWILKLIKYPNTVI 71 (329)
T ss_pred cccccCCHHHHhhcccHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence 56899999999999999999999999886 244558999999999999999999999999999999999
Q ss_pred HHhcCccccccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhh
Q 047294 154 DEFLHHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIG 233 (382)
Q Consensus 154 ~el~hp~~~~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg 233 (382)
+|++||+.++|++|++|+.+++.... ..+.....+.++||+++++++++.....+..++.+ +++.++++|+|++|+||
T Consensus 72 ~~l~~pv~~sf~~t~~ia~~~~~~~~-~~~~~~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~-~~~~~~~~Psw~lP~V~ 149 (329)
T COG1275 72 ADLNHPVVSSFVPTFPIATMLLSSYL-LYPGLPLLAYVLWWFGVALQLFFSAWFIYSLFRGK-KFELETITPSWFLPPVG 149 (329)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccccCccceeccccH
Confidence 99999999999999999998863322 45566678999999999999999888766666443 46778999999999999
Q ss_pred HHHHHHhhhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh--CChhH
Q 047294 234 NLVAAKAAAQMGW--GETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV--GTFDN 309 (382)
Q Consensus 234 ~iV~a~ag~~l~~--~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~--g~~~~ 309 (382)
+++++.++++.+. .+.++.++|.|+..|+++++.+++|+..++..|.+.||+.+|++||+|+...++..+. +..+.
T Consensus 150 ~~v~s~t~~~~~~~~~~~~~~~~~~g~~~~l~l~~iv~~r~~~~~~lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~ 229 (329)
T COG1275 150 IIVASLTASVLLGAYFVIGYVFFGAGFFSYLVLFPIVLYRLFTAGLLPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLT 229 (329)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCcchhhhccHHHHHHHHHHHhccCchHH
Confidence 9999999998876 7889999999999999999999999999999999999999999999999999988876 45678
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHhhhhcCCCcccceeeeechhHHHHHHHHHHHHHhChhhHHHHHHHHHHHhc
Q 047294 310 VAKILFFLSLFLFLSLVS-RPALFRKSMKKFSVTWWAYSFPLTVLALASAEYAQEVKSGNAQAMMLVLSALSV 381 (382)
Q Consensus 310 ~a~~L~~~~l~~~~~~v~-~~~~~~r~~~~F~~~wWAftFPl~~~a~at~~la~~~~~~~~~~l~~~l~~~~~ 381 (382)
++.++||+|+|++++++. .+++..| .||+++|||||||++++++++.++++..+...++.++..+...++
T Consensus 230 ~~~il~g~g~~~~~~~~~~~~~~~l~--~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~ 300 (329)
T COG1275 230 FVLILWGFGLLFLFFALLLLLRVLLR--LPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLI 300 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 999999999999999884 5552333 399999999999999999999999999999999999988877653
No 5
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=97.67 E-value=0.0059 Score=60.19 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCc
Q 047294 80 HAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHH 159 (382)
Q Consensus 80 ~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp 159 (382)
.+-+....||+..++..+..... +....+..++|+++.++.+.+......++..+++ .+.+|.
T Consensus 74 ~~f~~t~~m~~~~l~~~~~~~~~--------------~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~ 136 (330)
T PF03595_consen 74 SSFFPTFPMALMLLAAFISPYGG--------------PWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQP---FKLEHI 136 (330)
T ss_dssp GGGGGHHHHHHHHHHHHHTTT-------------------HHHHHHHHHHHHHHHHHHHHHHTGGGGG-SS---S-GGG-
T ss_pred cchHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHHHHHHHHhhhheehhccCc---cccccc
Confidence 35577888999999988776531 1125788899999988777665555554444322 355555
Q ss_pred cccccccHHHHHHHHHHhcccCCC--------CchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccch
Q 047294 160 VGVNYLFAPWISWLLLLQSSPFIS--------PKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISV 231 (382)
Q Consensus 160 ~~~~f~~t~~ms~~ll~~~~~~~~--------~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpv 231 (382)
.-+.+++......... .+..+.+ .....+..+|.+|....+.+...+++|...++. .+++..|+..++.
T Consensus 137 ~p~w~lp~Vg~~v~~~-~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~--~~~~~~p~~~I~~ 213 (330)
T PF03595_consen 137 NPSWFLPPVGIMVSAV-AGANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGL--PPAALRPTLFIFL 213 (330)
T ss_dssp -GGGHHHHTHHHHHHH-HHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----G-GGGGGGGGGG
T ss_pred ceeeeecchhHHHHHH-HHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcccCCCeeeec
Confidence 5555554443332221 1222222 123567889999999999888888888776642 3456789988888
Q ss_pred hhHHHHHHhhhhhcH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHH
Q 047294 232 IGNLVAAKAAAQMGW----------------GETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSM 295 (382)
Q Consensus 232 Vg~iV~a~ag~~l~~----------------~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~ 295 (382)
-+.-+++.+...++. ...+.++++.|+..+++...... |...++ .+-.|+.|-+.=|.+.
T Consensus 214 gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~F~~~~Wa~tFP~~~ 289 (330)
T PF03595_consen 214 GPPGLSALAYLSLGKAAVAFPPHGQILRGVADLFALLLWGFALWWFFLALLSLI-RYLRRR---LPFSPSWWAFTFPLGA 289 (330)
T ss_dssp HHHHHHHHHHHHHT-------------TT---HHHHHHHHHHHHHHHHHHHHHH-HHTTT--------GGGGGGHHHHHH
T ss_pred chHHHHHHHHHHhcccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccC---CCCCcchhHHhChHHH
Confidence 777777776655541 22567888888887766555444 433232 4578899999999999
Q ss_pred HHHHHHHhhCChh
Q 047294 296 ASLAWDAIVGTFD 308 (382)
Q Consensus 296 ~~lA~l~l~g~~~ 308 (382)
.+.|-..+.+..+
T Consensus 290 ~a~at~~l~~~~~ 302 (330)
T PF03595_consen 290 FALATLKLAQYLG 302 (330)
T ss_dssp HHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHhc
Confidence 8888888765443
No 6
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=97.55 E-value=0.029 Score=55.35 Aligned_cols=197 Identities=14% Similarity=0.064 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCcc
Q 047294 81 AGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHHV 160 (382)
Q Consensus 81 ~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp~ 160 (382)
+-+....||+..++..+..... ..+..+|+++.++-+.+.+....++..+. +.+.+|.+
T Consensus 73 ~f~~t~~m~~~~l~~~~~~~~~------------------~~~~~lw~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~~ 131 (320)
T TIGR00816 73 SFIPLIPISTMLLGIDFIIWGY------------------PLALGLWYIGAIGQLLFSVIVPFYLFKNE---SIEIEHTH 131 (320)
T ss_pred hhhhHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccccCC
Confidence 5677888999999888775432 24556788887775555544454444332 23455666
Q ss_pred ccccccHHHHHHHHHHhcccCCCCch-hhH---HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHH
Q 047294 161 GVNYLFAPWISWLLLLQSSPFISPKS-MYY---LVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGNLV 236 (382)
Q Consensus 161 ~~~f~~t~~ms~~ll~~~~~~~~~~~-~~~---~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~iV 236 (382)
-+.+++..+...... .+....+..+ ... ..+|.+|....+.+....++|...++ ...++..|+.+++.-+.-+
T Consensus 132 paw~lp~V~~~v~~~-~~~~l~~~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~--~~p~~~~P~~~I~~gP~~~ 208 (320)
T TIGR00816 132 PGWYLPPVALIFISA-AALAILPYLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHG--LLPSALRPTMFINLAPIGV 208 (320)
T ss_pred chhhhcccHHHHHHH-HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccchhhhhhheeccHHH
Confidence 666666555443221 1222222111 122 33477888888777777777776543 2446788998888777666
Q ss_pred HHHhhhhhc----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhC
Q 047294 237 AAKAAAQMG----WG-------ETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIVG 305 (382)
Q Consensus 237 ~a~ag~~l~----~~-------~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~g 305 (382)
++.+...+. .. ..+..+|++|...+++.......+ .. .+.+-.|+.|=+.=|.+..+.+-..+..
T Consensus 209 ~~~a~~~l~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~-~~---~~~~F~~~wWA~tFPlg~~a~at~~l~~ 284 (320)
T TIGR00816 209 GIVALINIVNHGEFITIKEPFLILAIILWGFGLWQLLFAIRLLLWY-VK---LKLPFAMGWWAFIFPLAAYANSTHLVYK 284 (320)
T ss_pred HHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hc---cCCCCCccHHHHcChHHHHHHHHHHHHH
Confidence 666554421 11 157788999998887766644433 32 2356889999999999888888777653
No 7
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=97.21 E-value=0.091 Score=52.13 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCcccc
Q 047294 83 YFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHHVGV 162 (382)
Q Consensus 83 ~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp~~~ 162 (382)
+.+..|++-.++..++... ..++.++|+++.++-+.+......|+..++ .+.+|-.-+
T Consensus 83 ~~t~~ms~~ll~~~~~~~~------------------~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~----~~~~~~~Pa 140 (324)
T PRK10764 83 VSLIPITTMLVAIGLVPYS------------------RPLAVVLFSFGVVGQLAFAAWRTAGLWRGG----HPEEATTPG 140 (324)
T ss_pred hhHHHHHHHHHHHHHHhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccCChh
Confidence 4456677777776665322 246778888888876766666666655542 567777777
Q ss_pred ccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHHHHHhhh
Q 047294 163 NYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGNLVAAKAAA 242 (382)
Q Consensus 163 ~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~iV~a~ag~ 242 (382)
.+++..+.....-..+... +. ...+..+|++|....+.+...+++|...++ ...++.-|+-++..-+.-++..+.-
T Consensus 141 W~ip~V~~~~v~~~a~~~~-~~-~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~--~lp~~~~P~l~I~lAP~~~~~~a~l 216 (324)
T PRK10764 141 LYLPTVANNFVSAMALGAL-GY-HDAGLLFLGAGVFSWLSLEPVILQRLRSSG--ELPTALRPSLGIQLAPAFVGCSAYL 216 (324)
T ss_pred hhhccchhhhHHHhhcccc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhhHHHHHHHHH
Confidence 7776664332110112222 22 356788999999999888888888877553 2445677888777766666665544
Q ss_pred hhc--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh
Q 047294 243 QMG--W-GETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV 304 (382)
Q Consensus 243 ~l~--~-~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~ 304 (382)
.++ . ...+..++++|++.++.+. ..+-|+. ..+-.|+.|=+.=|.+-...+-..+.
T Consensus 217 ~~~~~~~~~~~~~l~~~~l~~~~~~l-~~~~~~~-----~~~F~~swWAfTFPl~A~~~at~~l~ 275 (324)
T PRK10764 217 SVNGGEGDTLAKMLFGYGLLQLLFLL-RLMPWIL-----SQGFNASFWSFSFGVAALATTGLHLG 275 (324)
T ss_pred HHcCcchhHHHHHHHHHHHHHHHHHH-HHHHHHc-----CCCCCccHHHHccHHHHHHHHHHHHH
Confidence 443 2 2356778889887765422 1111222 13477788877777765555554443
No 8
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.15 Score=50.82 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCccccccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Q 047294 120 SAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVP 199 (382)
Q Consensus 120 ~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp~~~~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~ 199 (382)
...+..+|.++.+.-..+...+..+..+.. +-|.+|..-+-+.+..+...... .+............+.+++|...
T Consensus 103 ~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~---~~~~~~~~Psw~lP~V~~~v~s~-t~~~~~~~~~~~~~~~~~~g~~~ 178 (329)
T COG1275 103 PLLAYVLWWFGVALQLFFSAWFIYSLFRGK---KFELETITPSWFLPPVGIIVASL-TASVLLGAYFVIGYVFFGAGFFS 178 (329)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcccccCccceeccccHHHHHHH-HhhhHhHHHHHHHHHHHHHHHHH
Confidence 478899999997776666666655544432 45677777777777776665432 12222221134566778888888
Q ss_pred HHHHHHHHHHHHhhccccccccccCCccccchhh--HHHHHHhhhhh-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047294 200 ILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIG--NLVAAKAAAQM-G-WGETAVCMFSLGMAHYLVLFVTLYQRLAGS 275 (382)
Q Consensus 200 ~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg--~iV~a~ag~~l-~-~~~~~~~~fgiG~~~~lvl~~li~~RL~~~ 275 (382)
.+.+-..+..+.++.+. ....+.|+-.+...+ ...++.....- + ....+.+++|.|...+++.......|..
T Consensus 179 ~l~l~~iv~~r~~~~~~--lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~g~g~~~~~~~~~~~~~~~l-- 254 (329)
T COG1275 179 YLVLFPIVLYRLFTAGL--LPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILWGFGLLFLFFALLLLLRVLL-- 254 (329)
T ss_pred HHHHHHHHHHHHHHccC--CCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 87776667777775542 334567766555444 22222211111 2 3456788899999998888777777333
Q ss_pred CCCCCCcchhHHHhhhHHHHHHHHHHHhhC-----ChhHHHHHHHHHHHHHHHHH
Q 047294 276 SNLPAMLRPVFFLFIAAPSMASLAWDAIVG-----TFDNVAKILFFLSLFLFLSL 325 (382)
Q Consensus 276 ~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~g-----~~~~~a~~L~~~~l~~~~~~ 325 (382)
.....|+.|-+.=|.+..+.+-..+.. ..+.++..+..++......+
T Consensus 255 ---~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~ 306 (329)
T COG1275 255 ---RLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVL 306 (329)
T ss_pred ---cCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999998888888887776653 24455666655555544443
No 9
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=64.69 E-value=85 Score=33.65 Aligned_cols=55 Identities=25% Similarity=0.574 Sum_probs=34.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhcc-ccccccccCCcc-------ccc---------------hhhHHHHHHhhhhhcH
Q 047294 192 LWWIFVVPI-LVLDVKIYGQWFTKG-KRFVSVVANPTS-------QIS---------------VIGNLVAAKAAAQMGW 246 (382)
Q Consensus 192 LW~ig~~~~-l~l~~~~~~~~~~~~-~~~~~~~~~psw-------~lp---------------vVg~iV~a~ag~~l~~ 246 (382)
+|.+..+.. .+.++.+|++.+.++ -+.++++.+|+. ++| -.|++|++..++++||
T Consensus 4 ~~~v~aa~~iy~igYr~Yg~fi~eKV~~~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~ 82 (575)
T COG1966 4 LWFVLAAAIVYAIGYFFYGKFIAEKVFRLDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGW 82 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcC
Confidence 455444443 667777888875333 344556777773 222 2378888888888885
No 10
>PRK15015 carbon starvation protein A; Provisional
Probab=42.70 E-value=1.6e+02 Score=32.44 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=37.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhccc-cccccccCCcc-------ccc---------------hhhHHHHHHhhhhhcH
Q 047294 191 VLWWI-FVVPILVLDVKIYGQWFTKGK-RFVSVVANPTS-------QIS---------------VIGNLVAAKAAAQMGW 246 (382)
Q Consensus 191 vLW~i-g~~~~l~l~~~~~~~~~~~~~-~~~~~~~~psw-------~lp---------------vVg~iV~a~ag~~l~~ 246 (382)
.+|.+ ..+..+..++.+|++++.++. +.++++.+|+- +.| -.|++|++..++++||
T Consensus 34 al~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~Gw 113 (701)
T PRK15015 34 ALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGY 113 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcc
Confidence 34544 344556677889998775442 34456677762 222 2367888888888876
Q ss_pred H-HHHHHHH
Q 047294 247 G-ETAVCMF 254 (382)
Q Consensus 247 ~-~~~~~~f 254 (382)
- ..-|+++
T Consensus 114 lP~~LWIl~ 122 (701)
T PRK15015 114 LPGMIWLLA 122 (701)
T ss_pred hHHHHHHHH
Confidence 3 3333333
No 11
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=35.94 E-value=1.4e+02 Score=28.24 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Q 047294 80 HAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALF---TLTLLSLVYILRCLFH 148 (382)
Q Consensus 80 ~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~---l~~~l~~l~ilR~~~~ 148 (382)
|..+..-.+|.+++-......-. --+|+.+-..+|++++. +..++.++-++|++.+
T Consensus 106 ~~~~~~~l~~~~~~~~v~a~~lF-------------PlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf 164 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVGVIAICLF-------------PLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILF 164 (224)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh-------------hcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888877766555443322 12456666666666654 3344444556777664
No 12
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=34.18 E-value=65 Score=25.05 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHHHHH
Q 047294 196 FVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGNLVAAK 239 (382)
Q Consensus 196 g~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~iV~a~ 239 (382)
|.+.++++..-+..||...+|+.++.....=|.+..+|....-.
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~ 45 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLI 45 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHH
Confidence 56778888888888999655444432223348888888766554
No 13
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=32.49 E-value=5.6e+02 Score=26.22 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc-ccccccccCCcc-------ccc---------------hhhHHHHHHhhhhhcHH
Q 047294 196 FVVPILVLDVKIYGQWFTKG-KRFVSVVANPTS-------QIS---------------VIGNLVAAKAAAQMGWG 247 (382)
Q Consensus 196 g~~~~l~l~~~~~~~~~~~~-~~~~~~~~~psw-------~lp---------------vVg~iV~a~ag~~l~~~ 247 (382)
..+..+..++.+|+++..|+ .+.+.++.+|+. ++| -.|+++++..|+..||-
T Consensus 9 ~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~Gwl 83 (376)
T PF02554_consen 9 ISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWL 83 (376)
T ss_pred HHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcch
Confidence 44455667888999998664 223556677762 222 22667777777777753
No 14
>PHA00679 hypothetical protein
Probab=28.27 E-value=83 Score=23.20 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCcccceeeee
Q 047294 305 GTFDNVAKILFFLSLFLFLSLVSRPALFRKSMKKFSVTWWAYS 347 (382)
Q Consensus 305 g~~~~~a~~L~~~~l~~~~~~v~~~~~~~r~~~~F~~~wWAft 347 (382)
|+-+.+...+...+.||=-+++...+--.+ .+..+|||||
T Consensus 27 gsregvllwllawacfwpylllyaawqglk---ayraawwayt 66 (71)
T PHA00679 27 GSREGVLLWLLAWACFWPYLLLYAAWQGLK---AYRAAWWAYT 66 (71)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 333334444445555554444433332112 5788999986
No 15
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.44 E-value=3.7e+02 Score=22.14 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 047294 256 LGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIVGTFDNVAKILFFLSLFLFLSLVSRPALFRKS 335 (382)
Q Consensus 256 iG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~g~~~~~a~~L~~~~l~~~~~~v~~~~~~~r~ 335 (382)
+++.+..+-..+.++|+..++..|+...-.- .++...++.++.......-+.+......++++-|...+...|++.|+
T Consensus 12 ~a~~~l~~a~~l~l~Rlv~GPt~~DRivAlD--~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~g 89 (100)
T PRK12657 12 SALIIFGIALIICLFRLIKGPTTADRVVTFD--TTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGGG 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHH--HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4433444444556789998887777653332 23444455555555432223455555666777777666666655443
No 16
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=23.64 E-value=7.5e+02 Score=26.06 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=37.0
Q ss_pred cccchhhccccCChhhHHHHHHHHHHH--HHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047294 68 ISISLTQILTSFHAGYFRISLSLCSQA--LLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRC 145 (382)
Q Consensus 68 ~~~~~~~~l~~~~~~~F~~vMGtg~la--~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~ 145 (382)
.-|+....+.+=..++.++.+.+.++. ..+.... |.-+.+.+...+...++......+.-.
T Consensus 321 ~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~-----------------P~~vF~~v~s~s~~~~l~vW~~I~~s~ 383 (462)
T COG1113 321 DAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYIL-----------------PEKVFELVTSSSGLGLLFVWLMILLSQ 383 (462)
T ss_pred cccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhc-----------------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655566677766666554 3433322 234555555555555555555666666
Q ss_pred HHchH
Q 047294 146 LFHFK 150 (382)
Q Consensus 146 ~~~~~ 150 (382)
+++||
T Consensus 384 l~~rk 388 (462)
T COG1113 384 LKLRK 388 (462)
T ss_pred HHHHh
Confidence 66666
No 17
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.70 E-value=2.2e+02 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=20.5
Q ss_pred cccchhhHHHHHHhhhhhcHHHHHHHHHH
Q 047294 227 SQISVIGNLVAAKAAAQMGWGETAVCMFS 255 (382)
Q Consensus 227 w~lpvVg~iV~a~ag~~l~~~~~~~~~fg 255 (382)
+.+|.++.++++..+..++..|...++.+
T Consensus 75 Y~lPll~li~g~~l~~~~~~~e~~~~l~~ 103 (135)
T PF04246_consen 75 YLLPLLALIAGAVLGSYLGGSELWAILGG 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877766565443333
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=21.49 E-value=8.3e+02 Score=25.17 Aligned_cols=88 Identities=22% Similarity=0.181 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCcccc
Q 047294 83 YFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHHVGV 162 (382)
Q Consensus 83 ~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp~~~ 162 (382)
.+...+|+|...+.-+..+. +|.+..++.... .....++..+.+.+......-.++++.-.++++.++-++..+.
T Consensus 67 ~~~~gl~~g~~~liaq~~Ga---~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i 141 (455)
T COG0534 67 AIFIGLGTGTTVLVAQAIGA---GDRKKAKRVLGQ--GLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRI 141 (455)
T ss_pred HHHHHHHHhHHHHHHHHHcC---CchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Confidence 44555566666666666554 333333322111 1111122222222333334445566666666677777777777
Q ss_pred ccccHHHHHHHHH
Q 047294 163 NYLFAPWISWLLL 175 (382)
Q Consensus 163 ~f~~t~~ms~~ll 175 (382)
-.++.+++.+...
T Consensus 142 ~~~~~~~~~~~~~ 154 (455)
T COG0534 142 ILLGAPFALLSFV 154 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
Done!