Query 047294
Match_columns 382
No_of_seqs 135 out of 898
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m73_A Tellurite resistance pr 100.0 7.9E-55 2.7E-59 426.0 25.1 283 78-381 8-292 (314)
2 3m73_A Tellurite resistance pr 97.5 0.0076 2.6E-07 58.1 18.6 220 80-332 80-306 (314)
3 2k9j_B Integrin beta-3; transm 30.7 76 0.0026 21.0 4.3 34 120-153 8-41 (43)
4 2knc_B Integrin beta-3; transm 30.6 68 0.0023 24.1 4.6 31 121-151 10-40 (79)
5 1cn3_F Fragment of coat protei 8.6 74 0.0025 18.8 -0.0 12 221-232 13-24 (29)
6 1qys_A TOP7; alpha-beta, novel 7.4 1.3E+02 0.0043 22.8 0.8 12 12-23 37-48 (106)
7 2lco_A WALP19-P8 peptide; prol 6.6 4.3E+02 0.015 15.1 2.7 14 193-206 3-16 (26)
8 1u19_A Rhodopsin; G protein-co 6.6 2.9E+02 0.0099 24.5 3.1 20 81-100 42-61 (349)
9 3l1l_A Arginine/agmatine antip 6.5 1.4E+03 0.048 21.0 11.0 14 227-240 388-401 (445)
10 1whj_A 1700024K14RIK, riken cD 5.7 2.1E+02 0.0072 22.5 1.3 36 4-39 65-100 (102)
No 1
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=100.00 E-value=7.9e-55 Score=426.02 Aligned_cols=283 Identities=22% Similarity=0.321 Sum_probs=253.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhc
Q 047294 78 SFHAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFL 157 (382)
Q Consensus 78 ~~~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~ 157 (382)
|+||+||+++||||++|++|+..++ .++.++.++++++++|+++|++++++|+.|+++||+++++|++
T Consensus 8 ~~p~~~F~~~MGtg~la~~~~~~~~------------~~~~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p~~~~~~l~ 75 (314)
T 3m73_A 8 PLPTGYFGIPLGLAALSLAWFHLEN------------LFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYH 75 (314)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHTTTT------------TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH------------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6699999999999999999999886 4567789999999999999999999999999999999999999
Q ss_pred CccccccccHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhh-HHH
Q 047294 158 HHVGVNYLFAPWISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIG-NLV 236 (382)
Q Consensus 158 hp~~~~f~~t~~ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg-~iV 236 (382)
||++++|++|++|+++++ +....+..+..+.++||+++++++++++.+.+++++++ +++.+++||+|++|+|| ++|
T Consensus 76 hPv~~~f~~t~~ma~~~l--~~~~~~~~~~~a~~lW~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~psW~lp~V~~~~V 152 (314)
T 3m73_A 76 SPVRFSFIALIPITTMLV--GDILYRWNPLIAEVLIWIGTIGQLLFSTLRVSELWQGG-VFEQKSTHPSFYLPAVAANFT 152 (314)
T ss_dssp STTGGGGGGHHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTGGGGGCS-SSCGGGCCGGGHHHHTHHHHH
T ss_pred CCcchhhHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcccccCchhHhhccHHHHH
Confidence 999999999999999876 44445566778999999999999998888777766553 35678999999999999 699
Q ss_pred HHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh-CChhHHHHHHH
Q 047294 237 AAKAAAQMGWGETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV-GTFDNVAKILF 315 (382)
Q Consensus 237 ~a~ag~~l~~~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~-g~~~~~a~~L~ 315 (382)
++.+|+.++++|.++++||+|+++|+++++++++|+.. +++|++++|++||.+||+|+++.|+..+. +..|.++.++|
T Consensus 153 ~a~~g~~~~~~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~~~~~~~~~~~l~ 231 (314)
T 3m73_A 153 SASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILW 231 (314)
T ss_dssp HCC-TTTTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHcCCcchHHHHHHH
Confidence 99999999988999999999999999999999999999 88999999999999999999999999997 46789999999
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCcccceeeeechhHHHHHHHHHHHHHhChhhHHHHHHHHHHHhc
Q 047294 316 FLSLFLFLSLVSRPALFRKSMKKFSVTWWAYSFPLTVLALASAEYAQEVKSGNAQAMMLVLSALSV 381 (382)
Q Consensus 316 ~~~l~~~~~~v~~~~~~~r~~~~F~~~wWAftFPl~~~a~at~~la~~~~~~~~~~l~~~l~~~~~ 381 (382)
++|+||+.+++...++++| .||+++|||||||+|++++|+.++++ ++++++++.+++++.+
T Consensus 232 ~~~l~~~~~~~~~~~~~~~--~~F~~~wWaftFPl~~~a~at~~l~~---~~~~~~l~~~l~~~~~ 292 (314)
T 3m73_A 232 GYGFLQLFFLLRLFPWIVE--KGLNIGLWAFSAGLASMANSATAFYH---GNVLQGVSIFAFVFSN 292 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TCCCGGGGGGHHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CCCCccHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 9999999988765545555 39999999999999999999999999 7789999998887654
No 2
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=97.45 E-value=0.0076 Score=58.05 Aligned_cols=220 Identities=10% Similarity=-0.006 Sum_probs=131.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcCc
Q 047294 80 HAGYFRISLSLCSQALLWKLLGERPAQDAHPFRRLLSLLPSAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQDEFLHH 159 (382)
Q Consensus 80 ~~~~F~~vMGtg~la~l~~~~~~~~~~~~~~~~~~~~~~p~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~~el~hp 159 (382)
..-+....||+..++..+.... ..++.++|+++.++-+.+......+...+. +.+.+|-
T Consensus 80 ~~f~~t~~ma~~~l~~~~~~~~------------------~~~a~~lW~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~ 138 (314)
T 3m73_A 80 FSFIALIPITTMLVGDILYRWN------------------PLIAEVLIWIGTIGQLLFSTLRVSELWQGG---VFEQKST 138 (314)
T ss_dssp GGGGGHHHHHHHHHHHHHTTTC------------------HHHHHHHHHHHHHHHHHHHHHHTGGGGGCS---SSCGGGC
T ss_pred hhhHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCccccc
Confidence 3456778888888887654211 357889998888776654433323322221 1245555
Q ss_pred cccccccHHH-HHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHHHH
Q 047294 160 VGVNYLFAPW-ISWLLLLQSSPFISPKSMYYLVLWWIFVVPILVLDVKIYGQWFTKGKRFVSVVANPTSQISVIGNLVAA 238 (382)
Q Consensus 160 ~~~~f~~t~~-ms~~ll~~~~~~~~~~~~~~~vLW~ig~~~~l~l~~~~~~~~~~~~~~~~~~~~~psw~lpvVg~iV~a 238 (382)
.-+.+++... +..... .+... +. ...++.+|++|....+.+...+++|... ++ .+++..|+.+++.-+.-+++
T Consensus 139 ~psW~lp~V~~~~V~a~-~g~~~-~~-~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~--lp~~~~P~~~I~~aP~~~~~ 212 (314)
T 3m73_A 139 HPSFYLPAVAANFTSAS-SLALL-GY-HDLGYLFFGAGMIAWIIFEPVLLQHLRI-SS--LEPQFRATMGIVLAPAFVCV 212 (314)
T ss_dssp CGGGHHHHTHHHHHHCC--TTTT-TC-CC-CHHHHHHHHHHHHHHHHHHHHHHHH-TC--CCHHHHGGGGGGGHHHHHHH
T ss_pred CchhHhhccHHHHHHHH-hhhhh-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHcc-cC--CChhhhhHHHHHHhhHHHHH
Confidence 5555554443 221110 11112 22 2468899999999999888777888776 43 34567899999888777777
Q ss_pred Hhhhhhc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHhhhHHHHHHHHHHHhh--CChhHHHHH
Q 047294 239 KAAAQMG---WGETAVCMFSLGMAHYLVLFVTLYQRLAGSSNLPAMLRPVFFLFIAAPSMASLAWDAIV--GTFDNVAKI 313 (382)
Q Consensus 239 ~ag~~l~---~~~~~~~~fgiG~~~~lvl~~li~~RL~~~~~~p~~~~Ps~~I~~aP~a~~~lA~l~l~--g~~~~~a~~ 313 (382)
.+.-.++ ....+..+|++|+..+.+.... ..|.. +.+-.|+.|=+.=|.+..+.|-..+. +..+.++..
T Consensus 213 ~a~l~l~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~-----~~~F~~~wWaftFPl~~~a~at~~l~~~~~~~~l~~~ 286 (314)
T 3m73_A 213 SAYLSINHGEVDTLAKILWGYGFLQLFFLLRL-FPWIV-----EKGLNIGLWAFSAGLASMANSATAFYHGNVLQGVSIF 286 (314)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH-HHHHT-----TTCCCGGGGGGHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHH-HHHHc-----CCCCCccHHHHhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7655553 1246788999999887765542 23332 24577888888888887777665553 234445554
Q ss_pred HHHHHH-HHHHHHHHhhHhh
Q 047294 314 LFFLSL-FLFLSLVSRPALF 332 (382)
Q Consensus 314 L~~~~l-~~~~~~v~~~~~~ 332 (382)
+..... .|..+.+...+..
T Consensus 287 l~~~~~~~~~~v~~~tl~~~ 306 (314)
T 3m73_A 287 AFVFSNVMIGLLVLMTIYKL 306 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 444443 3444444444443
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=30.67 E-value=76 Score=21.01 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q 047294 120 SAAFSLLWSVALFTLTLLSLVYILRCLFHFKMVQ 153 (382)
Q Consensus 120 ~~i~~il~~lal~l~~~l~~l~ilR~~~~~~~v~ 153 (382)
.....++..++.++.+.+.++.+.|++.+-++-|
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 4556666667777778888888899887665543
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.62 E-value=68 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 047294 121 AAFSLLWSVALFTLTLLSLVYILRCLFHFKM 151 (382)
Q Consensus 121 ~i~~il~~lal~l~~~l~~l~ilR~~~~~~~ 151 (382)
+.+.++.+++.++.+.+.++.+.|++.+-++
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~D 40 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHD 40 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777777655543
No 5
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=8.56 E-value=74 Score=18.76 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=9.9
Q ss_pred cccCCccccchh
Q 047294 221 VVANPTSQISVI 232 (382)
Q Consensus 221 ~~~~psw~lpvV 232 (382)
++++|-|.+|.+
T Consensus 13 qrvtpdwmlpli 24 (29)
T 1cn3_F 13 QRVTPDWMLPLI 24 (29)
T ss_dssp CCCEEGGGHHHH
T ss_pred cccCchhhHHHH
Confidence 568999999865
No 6
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=7.39 E-value=1.3e+02 Score=22.78 Aligned_cols=12 Identities=50% Similarity=0.672 Sum_probs=9.5
Q ss_pred hhhhhhccccee
Q 047294 12 HTYIKKQKKKTI 23 (382)
Q Consensus 12 ~~~~~~~~~~~~ 23 (382)
-.|||||..|.+
T Consensus 37 mdyikkqgakrv 48 (106)
T 1qys_A 37 MDYIKKQGAKRV 48 (106)
T ss_dssp HHHHHHHCCSEE
T ss_pred HHHHHhcCCcEE
Confidence 469999987764
No 7
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=6.63 E-value=4.3e+02 Score=15.10 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 047294 193 WWIFVVPILVLDVK 206 (382)
Q Consensus 193 W~ig~~~~l~l~~~ 206 (382)
||++.+..+.++..
T Consensus 3 wwlalapalalala 16 (26)
T 2lco_A 3 WWLALAPALALALA 16 (26)
T ss_pred hHHHHhHHHHHHHH
Confidence 66666666555443
No 8
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=6.62 E-value=2.9e+02 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 047294 81 AGYFRISLSLCSQALLWKLL 100 (382)
Q Consensus 81 ~~~F~~vMGtg~la~l~~~~ 100 (382)
...+.+..-.|.+||..-..
T Consensus 42 ~~~~~~i~~~gi~gN~lvi~ 61 (349)
T 1u19_A 42 AAYMFLLIMLGFPINFLTLY 61 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHheEe
Confidence 34556666667777765443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.53 E-value=1.4e+03 Score=21.02 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=7.0
Q ss_pred cccchhhHHHHHHh
Q 047294 227 SQISVIGNLVAAKA 240 (382)
Q Consensus 227 w~lpvVg~iV~a~a 240 (382)
+.++.+|.+.+...
T Consensus 388 ~~~~~~~~~~~~~~ 401 (445)
T 3l1l_A 388 LAVTTIAFLYCIWA 401 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544443
No 10
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=5.68 E-value=2.1e+02 Score=22.50 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=29.7
Q ss_pred ccccccchhhhhhhcccceeeeehhhcccccccCCc
Q 047294 4 KNNVSLTSHTYIKKQKKKTIFVLSRLINMAAELKSE 39 (382)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (382)
|||=+..-..|.+-+.+.-+||-...++..++++|+
T Consensus 65 KnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~~ 100 (102)
T 1whj_A 65 KNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGPS 100 (102)
T ss_dssp SBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCCS
T ss_pred ccCCEECCEEecccCCCeEEEEeHHHccccCCCCCC
Confidence 788888888999888999999988888877765554
Done!