Query 047294
Match_columns 382
No_of_seqs 135 out of 898
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 16:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047294.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047294hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 14.1 3.2E+02 0.023 22.6 12.5 16 269-284 432-447 (447)
2 d2vzsa3 b.1.4.1 (A:675-777) Ex 7.7 56 0.0041 23.7 0.9 47 2-51 8-54 (103)
3 d1ku5a_ a.22.1.2 (A:) Archaeal 5.8 91 0.0067 20.3 1.1 16 9-24 41-56 (66)
4 d1v54d_ f.23.1.1 (D:) Mitochon 4.6 5.3E+02 0.038 19.5 5.2 25 258-282 84-108 (144)
5 d1htaa_ a.22.1.2 (A:) Archaeal 3.9 1.3E+02 0.0093 19.6 0.7 16 9-24 42-57 (68)
6 d1xgka_ c.2.1.2 (A:) Negative 3.8 1.3E+02 0.0096 25.3 0.8 11 18-28 1-11 (350)
7 d2e9xb2 d.344.1.2 (B:1-61) DNA 3.2 1.7E+02 0.012 19.1 0.8 18 6-23 43-60 (61)
8 d1oyia_ a.4.5.19 (A:) dsRNA-bi 3.1 1.2E+02 0.0084 19.3 -0.2 14 22-35 20-33 (62)
9 d2akza2 d.54.1.1 (A:1-139) Eno 3.0 3.6E+02 0.026 20.1 2.8 26 32-57 11-44 (139)
10 d1pgya_ a.5.2.1 (A:) Auxilin-l 3.0 1.4E+02 0.01 18.3 0.2 12 10-21 33-44 (47)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.14 E-value=3.2e+02 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=6.8
Q ss_pred HHHHHcCCCCCCCcch
Q 047294 269 YQRLAGSSNLPAMLRP 284 (382)
Q Consensus 269 ~~RL~~~~~~p~~~~P 284 (382)
..+-..++...++.+|
T Consensus 432 ~~~~~r~~~~~~e~~P 447 (447)
T d1pw4a_ 432 IGEKRRHEQLLQELVP 447 (447)
T ss_dssp HHHHHHHHGGGGGSCC
T ss_pred HhccccHHHHHHhCCC
Confidence 3333334444444444
No 2
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=7.73 E-value=56 Score=23.74 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=33.6
Q ss_pred CcccccccchhhhhhhcccceeeeehhhcccccccCCcceEEeecCCCCC
Q 047294 2 YMKNNVSLTSHTYIKKQKKKTIFVLSRLINMAAELKSETQIEIIIEPTKS 51 (382)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (382)
|-+++|.+-.|++- +.+..-|-.|.+|++.+...+.|..+++.+.+.
T Consensus 8 ~~~~~V~VVN~t~~---~~~~~~v~a~v~Dl~Gk~~~~~~~~~~~~~~~~ 54 (103)
T d2vzsa3 8 HDNRSVVVINQTSN---AVSGLTATTKLYNLDGTEKYSNTKTGLSVGALG 54 (103)
T ss_dssp TTTCEEEEEECSSS---CEEEEEEEEEEEETTSCEEEEEEEEEEEECSTT
T ss_pred CCCCEEEEEECCCc---ccCCeEEEEEEEeCCCCEEEEEEEEEEEcCCCc
Confidence 56778888887752 233345667999999988888888887766554
No 3
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=5.77 E-value=91 Score=20.30 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=12.9
Q ss_pred cchhhhhhhcccceee
Q 047294 9 LTSHTYIKKQKKKTIF 24 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (382)
-.+|.|-+..|+|||-
T Consensus 41 ~~a~~~a~~~~RKTI~ 56 (66)
T d1ku5a_ 41 KKAVEFARHAGRKTVK 56 (66)
T ss_dssp HHHHHHHHTTTCSEEC
T ss_pred HHHHHHHHHcCCCCCC
Confidence 3578889999999984
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.65 E-value=5.3e+02 Score=19.46 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCc
Q 047294 258 MAHYLVLFVTLYQRLAGSSNLPAML 282 (382)
Q Consensus 258 ~~~~lvl~~li~~RL~~~~~~p~~~ 282 (382)
+++.+.+...+..|....+++|+.+
T Consensus 84 ~~i~~s~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 84 FFIGFTALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3344444455567777666666554
No 5
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=3.90 E-value=1.3e+02 Score=19.56 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=12.5
Q ss_pred cchhhhhhhcccceee
Q 047294 9 LTSHTYIKKQKKKTIF 24 (382)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (382)
-.+++|-+..|+|||-
T Consensus 42 ~~a~~~a~~~kRkTi~ 57 (68)
T d1htaa_ 42 SEAVKLAKHAGRKTIK 57 (68)
T ss_dssp HHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhCCCcCC
Confidence 3567888899999974
No 6
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}
Probab=3.76 E-value=1.3e+02 Score=25.29 Aligned_cols=11 Identities=55% Similarity=0.600 Sum_probs=8.9
Q ss_pred cccceeeeehh
Q 047294 18 QKKKTIFVLSR 28 (382)
Q Consensus 18 ~~~~~~~~~~~ 28 (382)
||||||.|..-
T Consensus 1 ~~kktIlVtGa 11 (350)
T d1xgka_ 1 QQKKTIAVVGA 11 (350)
T ss_dssp CCCCCEEEEST
T ss_pred CCCCEEEEECC
Confidence 78999998753
No 7
>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.25 E-value=1.7e+02 Score=19.14 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=12.3
Q ss_pred ccccchhhhhhhccccee
Q 047294 6 NVSLTSHTYIKKQKKKTI 23 (382)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (382)
.|-|=--.++|||+|-+|
T Consensus 43 ~VPLWlAl~LK~q~kC~I 60 (61)
T d2e9xb2 43 EVPLWLAINLKQRQKCRL 60 (61)
T ss_dssp EEEHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHhccCceeE
Confidence 344444567899998877
No 8
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=3.07 E-value=1.2e+02 Score=19.35 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=10.7
Q ss_pred eeeeehhhcccccc
Q 047294 22 TIFVLSRLINMAAE 35 (382)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (382)
|-.-|.|.+|||.|
T Consensus 20 ta~qltrqlnmekr 33 (62)
T d1oyia_ 20 TAAQLTRQLNMEKR 33 (62)
T ss_dssp EHHHHHHHSSSCHH
T ss_pred HHHHHHHHHhHHHH
Confidence 44557889999987
No 9
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=3.02 E-value=3.6e+02 Score=20.12 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=16.6
Q ss_pred cccccCCcceEEee--------cCCCCCCCCCCC
Q 047294 32 MAAELKSETQIEII--------IEPTKSQSQSHC 57 (382)
Q Consensus 32 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 57 (382)
+-||-+|.+|++|. +.|++.++-.++
T Consensus 11 lDSRG~PTvevev~~~~g~~~a~~PsGaStG~~E 44 (139)
T d2akza2 11 LDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYE 44 (139)
T ss_dssp ECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTS
T ss_pred EcCCCCeEEEEEEEECCCeEEEecccccccchhh
Confidence 45778999998773 346665444443
No 10
>d1pgya_ a.5.2.1 (A:) Auxilin-like protein Swa2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.00 E-value=1.4e+02 Score=18.31 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=7.7
Q ss_pred chhhhhhhcccc
Q 047294 10 TSHTYIKKQKKK 21 (382)
Q Consensus 10 ~~~~~~~~~~~~ 21 (382)
|-.+|+.|+|+|
T Consensus 33 ~yE~~l~~~k~k 44 (47)
T d1pgya_ 33 TYERYLEILKSK 44 (47)
T ss_dssp SSHHHHHHHHHS
T ss_pred hHHHHHHHHHHh
Confidence 445677777665
Done!