BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047296
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 53/262 (20%)
Query: 80 IYG-GILDGQGAGLWARKRSGNNNCPSGAK-----ESWKIILGFSNSNNILINGLTSQNS 133
IYG G +DGQG K+ + AK ++ ++ + S N + ++ NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 134 QMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV---- 189
FHVV + + + NTDGI SS ++TI + I TGDD V++
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 190 -----------------GHGISIGSLGKEVHEAGVQNVTV------------KYSWGRPS 220
GHG+SIGS GV NVTV + + +
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 221 TGFSRNILFQHAVMKSVDNPIVIDQNY-CRDNKNCPGKASGVKISDVTYQDIHGTSVTKV 279
G + + + VMK+V PIVID Y ++ N P SD+T++D+ TS TK
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVP------DWSDITFKDV--TSETKG 339
Query: 280 VVKIDCSQKYPCSGIKFEDVKL 301
VV ++ + ++VKL
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKL 361
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 147/355 (41%), Gaps = 63/355 (17%)
Query: 3 TYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDI 62
T N++S GA +D TD A +AWA AC S +Y+P G Y L+ V I
Sbjct: 20 TCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTGGSATAI 76
Query: 63 TIH---------AGNWILFEHVNGVYIYGGILDG--QGAGLWARKRSGNNNCPSGAKESW 111
+ +GN I ++ G QG G + G GA+
Sbjct: 77 QLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFG-YVYHAEGTY----GAR--- 128
Query: 112 KIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSS 171
IL ++ + ++ + ++ FH ++ C + +V M + GN DGI V S
Sbjct: 129 --ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGS- 184
Query: 172 DVTILNARIGTGDDCVSVGH----------------GISIGSLG--KEVHEAGVQNVTVK 213
++ + + + D+CV+V G ++GSLG +V + +NV
Sbjct: 185 NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIVYRNV--- 241
Query: 214 YSWGR---------PSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKIS 264
Y+W +G N+L ++ + + ID Y G GV+++
Sbjct: 242 YTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDID-GYWSSMTAVAGD--GVQLN 298
Query: 265 DVTYQDIHGTSV---TKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEAS-CRNA 315
++T ++ GT T+ +++ CS PC+ + ED+ + ++ +E CR+A
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSA 353
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 141/350 (40%), Gaps = 85/350 (24%)
Query: 24 LAAWAKACGSTAASTIYVPPGRYL----LHN---VVFQGQCRNNDITIHAGNWILFEHVN 76
LA +C + + VP G+ L L N V F+G + N I+ N
Sbjct: 11 LATAVSSCKNIVLNGFQVPTGKQLDLSSLQNDSTVTFKGTTTFATTADNDFNPIVISGSN 70
Query: 77 GVYIYGG---ILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNS 133
+ I G ++DG G W K S +N S K I++ + N+ + N L QN
Sbjct: 71 -ITITGASGHVIDGNGQAYWDGKGSNSN---SNQKPDHFIVVQKTTGNSKITN-LNIQNW 125
Query: 134 QMFHVVINGCHNVKVQGMRV---------SASGNSP---NTDGIHVQSSSDVTILNARIG 181
+ I G + + G+ + + SG+ P NTDG + SS VT+ N +
Sbjct: 126 PVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVY 185
Query: 182 TGDDCVSV---------------GHGISIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRN 226
DDCV+V GHG+SIGS+G G S N
Sbjct: 186 NQDDCVAVTSGTNIVVSNMYCSGGHGLSIGSVG----------------------GKSDN 223
Query: 227 ILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCS 286
++ + S +V QN CR N A+G I++VTYQ+I T+++ +D
Sbjct: 224 VVDGVQFLSS---QVVNSQNGCRIKSNS--GATGT-INNVTYQNIALTNIS--TYGVDVQ 275
Query: 287 QKY--------PCSGIKFEDVKLIYKNQPAEASCRN-----ADVSASGFV 323
Q Y P +G+K ++K I +S ++ D S SGF
Sbjct: 276 QDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFT 325
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 37/187 (19%)
Query: 161 NTDGIHVQSSSDVTILNARIGTGDDCVSV---------------GHGISIGSLGKEVHEA 205
NTD V +S V I+ + DDC++V GHG+SIGS+G +
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNV 237
Query: 206 GVQNVTVKYSWGRPS------------TGFSRNILFQHAVMKSV-DNPIVIDQNYCRDNK 252
V+NVT+++S S TG I + + VM + D +VI Q+Y D K
Sbjct: 238 -VKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDY-EDGK 295
Query: 253 NCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLI-------YKN 305
+GV I DV + + G+ + CS ++DVK+ KN
Sbjct: 296 PTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKN 355
Query: 306 QPAEASC 312
P+ ASC
Sbjct: 356 FPSVASC 362
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 113/268 (42%), Gaps = 52/268 (19%)
Query: 85 LDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCH 144
++G G+ W GN G K K S +N++ I+GL NS + + G
Sbjct: 84 INGDGS-RWWDGEGGN-----GGKTKPKFFAAHSLTNSV-ISGLKIVNSPVQVFSVAGSD 136
Query: 145 NVKVQGMRVSASGNSPN----TDGIHVQSSSDVTILNARIGTGDDCVSV----------- 189
+ ++ + + S N TD + +S+ VTI A + DDCV+V
Sbjct: 137 YLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGG 196
Query: 190 ----GHGISIGSLGKEVHEAGVQNVT------------VKYSWGRPSTGFSRNILFQHAV 233
GHG+SIGS+G V+NVT V+ +TG ++ ++
Sbjct: 197 YCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDIT 255
Query: 234 MKSVDN-PIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVV-VKIDCSQKYPC 291
+ S+ IV+ QNY D + P +GV I+D ++HG+ V+ + I C C
Sbjct: 256 LTSIAKYGIVVQQNY-GDTSSTP--TTGVPITDFVLDNVHGSVVSSGTNILISCGSG-SC 311
Query: 292 SGIKFEDVKLI-------YKNQPAEASC 312
S + DV + N P+ ASC
Sbjct: 312 SDWTWTDVSVSGGKTSSKCTNVPSGASC 339
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 114/277 (41%), Gaps = 63/277 (22%)
Query: 82 GGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVIN 141
G ++DG G+ W K + +G K K + + + G+ +N+ + + +
Sbjct: 77 GAVIDGDGSRWWDSKGT------NGGKTKPKFMY-IHDVEDSTFKGINIKNTPVQAISVQ 129
Query: 142 GCHNVKVQGMRVSASGNSPN----TDGIHVQSSSDVTILNARIGTGDDCVSV-------- 189
NV + + S N TDG + S+ V I A + DDC+++
Sbjct: 130 -ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISF 188
Query: 190 -------GHGISIGSLGKEVHEAGVQNVTVKYSWGRPS------------TGFSRNILFQ 230
GHG+SIGS+G + V+NVT+ S S TG I +
Sbjct: 189 TGGTCSGGHGLSIGSVGGR-DDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYS 247
Query: 231 HAVMKSV-DNPIVIDQNYCRDNKNCPGKAS-GVKISDVTYQDIHGTSVTKVVVKIDCSQK 288
+ + + D IVI+Q+Y +N + G S G+ I+DVT + GT ++ D +Q
Sbjct: 248 NIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGT------LEDDATQV 299
Query: 289 Y------PCSGIKFEDVKLI-------YKNQPAEASC 312
Y CS + V L +N P+ ASC
Sbjct: 300 YILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGASC 336
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 117 FSNSNNILINGLTSQNSQMF--HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVT 174
F N+L+ G+ NS M+ H V++ NV ++ + +S++G PN DGI +S +
Sbjct: 195 FYRCRNVLVEGVKIINSPMWCIHPVLS--ENVIIRNIEISSTG--PNNDGIDPESCKYML 250
Query: 175 ILNARIGTGDDCVSVGHG 192
I R TGDD V + G
Sbjct: 251 IEKCRFDTGDDSVVIKSG 268
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 122 NILINGLTSQNSQMFHVVIN-GCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARI 180
N+ + G T +N FH ++N HNV G+ + + ++ N DGI +S +V + N
Sbjct: 341 NVYLAGFTVRNPA-FHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGNSQNVMVFNNFF 398
Query: 181 GTGDDCVSVGHG 192
TGDDC++ G
Sbjct: 399 DTGDDCINFAAG 410
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 123/305 (40%), Gaps = 68/305 (22%)
Query: 20 TKAFLAAWAKA-CGSTAASTIYVPPGRYLLHN-------VVFQGQCRNNDITIHAGNW-- 69
T A A KA C S + I VP G L V FQG+ T W
Sbjct: 6 TDAAAAIKGKASCTSIILNGIVVPAGTTLDMTGLKSGTTVTFQGK-----TTFGYKEWEG 60
Query: 70 --ILFE----HVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFS-NSNN 122
I F ++NG G +D QG+ W K S +G K K S S+N
Sbjct: 61 PLISFSGTNININGAS--GHSIDCQGSRWWDSKGS------NGGKTKPKFFYAHSLKSSN 112
Query: 123 ILINGLTSQNSQMFHVVINGCHNVKVQGMRV-SASGNSP---NTDGIHVQSSSDVTILNA 178
I GL N+ + IN + V + + +++G+S NTD V SS+ V I A
Sbjct: 113 I--KGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGA 170
Query: 179 RIGTGDDCVSV---------------GHGISIGSLGKEVHEAGVQNVT------------ 211
+ DDC+++ GHG+SIGS+G V+ VT
Sbjct: 171 NVKNQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNT-VKTVTISNSKIVNSDNG 229
Query: 212 VKYSWGRPSTGFSRNILFQHAVMKSVDN-PIVIDQNYCRDNKNCPGKAS-GVKISDVTYQ 269
V+ +TG + + + ++ IVI+Q+Y +N + G + GV I+ +T
Sbjct: 230 VRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDY--ENGSPTGTPTNGVPITGLTLS 287
Query: 270 DIHGT 274
I G+
Sbjct: 288 KITGS 292
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 19/68 (27%)
Query: 161 NTDGIHVQSSSDVTILNARIGTGDDCVSV---------------GHGISIGSLGKEVHEA 205
NTDG V S+++VTI N + DDC+++ GHGISIGS+ H
Sbjct: 151 NTDGFDV-SANNVTIQNCIVKNQDDCIAINDGNNIRFENNQCSGGHGISIGSIATGKH-- 207
Query: 206 GVQNVTVK 213
V NV +K
Sbjct: 208 -VSNVVIK 214
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 2 VTYNVISLGAKSDGQTDSTKAFLAAW------AKACGSTAA--STIYVPPGRYLLHN--- 50
V NV + GAK DG TD T A AA + C ST + +Y PPG Y + +
Sbjct: 48 VFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLV 107
Query: 51 VVFQGQC 57
V++Q Q
Sbjct: 108 VLYQTQL 114
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 6 VISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVV 52
V S GAK DG TD T+A +AK G I+ G Y++ + +
Sbjct: 403 VRSQGAKGDGHTDDTQAIKNVFAKYAG---CKIIFFDAGTYIVTDTI 446
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 95 RKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVK---VQGM 151
R+ +G N CP E W L S ++ F V C+++ V+G
Sbjct: 38 REYTGTNPCPEDFDEYWNRALDEMRS----VDPKIELKESSFQVSFAECYDLYFTGVRGA 93
Query: 152 RVSASGNSPNTDGIH 166
R+ A P T+G H
Sbjct: 94 RIHAKYIKPKTEGKH 108
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 85 LDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCH 144
LD G GL+AR +G +CP SN L +G I
Sbjct: 300 LDDAGIGLFARTGTGVAHCPC--------------SNMRLASG------------IAPVK 333
Query: 145 NVKVQGMRVSASGN-SPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLG 199
+++ G+ V + S + DG + + +L R+G G D ++ + I +LG
Sbjct: 334 KMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTAREALEIATLG 389
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 6 VISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLL-------HNVVFQGQCR 58
V + GAK DG TD +AF A +YVP G +++ N V G +
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMVSRGIKLPSNTVLTGAGK 78
Query: 59 NNDI 62
N +
Sbjct: 79 RNAV 82
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 179 RIGTGDDCVSVG---HGISIGSLGKEVHEAGVQNVTVKYSWGRP 219
RI GDDC+ VG H + G + VH G T G P
Sbjct: 263 RIDEGDDCLVVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAP 306
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 6 VISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLL-------HNVVFQGQCR 58
V + GAK DG TD +AF A +YVP G +++ N V G +
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMVSRGIKLPSNTVLTGAGK 78
Query: 59 NNDI 62
N +
Sbjct: 79 RNAV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,336,844
Number of Sequences: 62578
Number of extensions: 451754
Number of successful extensions: 982
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 26
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)