Query 047296
Match_columns 331
No_of_seqs 232 out of 1523
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.2E-71 2.7E-76 526.2 39.6 322 2-330 26-393 (394)
2 PLN03003 Probable polygalactur 100.0 6.4E-70 1.4E-74 518.3 39.2 317 2-331 22-391 (456)
3 PLN02793 Probable polygalactur 100.0 1.6E-69 3.6E-74 519.3 41.6 322 2-330 51-424 (443)
4 PLN02188 polygalacturonase/gly 100.0 2.5E-69 5.4E-74 512.6 41.5 324 1-329 34-404 (404)
5 PLN03010 polygalacturonase 100.0 3.3E-68 7.1E-73 503.9 39.9 308 2-329 45-403 (409)
6 PLN02218 polygalacturonase ADP 100.0 4.7E-68 1E-72 507.1 39.6 316 2-329 66-431 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 3.6E-52 7.7E-57 389.1 26.2 280 31-319 1-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6.5E-35 1.4E-39 282.0 23.9 253 2-276 81-398 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 8.1E-23 1.8E-27 192.2 17.6 161 1-189 35-208 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 9.1E-18 2E-22 148.5 16.3 53 3-56 1-54 (225)
11 PF03718 Glyco_hydro_49: Glyco 99.7 1.1E-15 2.4E-20 145.5 24.9 144 36-189 232-398 (582)
12 PLN02793 Probable polygalactur 99.6 4.8E-13 1E-17 129.3 21.5 165 69-276 179-397 (443)
13 PF00295 Glyco_hydro_28: Glyco 99.6 3E-13 6.4E-18 126.8 19.4 165 68-275 93-310 (326)
14 PLN02218 polygalacturonase ADP 99.6 9.4E-13 2E-17 126.7 22.5 164 69-275 194-410 (431)
15 PLN02155 polygalacturonase 99.5 1.7E-12 3.7E-17 123.6 21.3 166 69-276 147-366 (394)
16 PLN02188 polygalacturonase/gly 99.5 2.5E-12 5.3E-17 123.0 22.3 168 69-276 157-377 (404)
17 TIGR03805 beta_helix_1 paralle 99.5 4.7E-12 1E-16 117.9 23.2 125 23-189 1-135 (314)
18 PLN03010 polygalacturonase 99.5 3.4E-12 7.5E-17 121.9 21.5 182 114-313 132-359 (409)
19 PLN03003 Probable polygalactur 99.5 4.8E-12 1E-16 121.8 22.0 177 114-313 106-342 (456)
20 COG5434 PGU1 Endopygalactoruna 99.2 5.5E-10 1.2E-14 109.3 14.4 141 69-244 240-405 (542)
21 PF12541 DUF3737: Protein of u 98.2 1.6E-05 3.4E-10 70.5 9.9 100 116-236 93-205 (277)
22 PF12541 DUF3737: Protein of u 98.1 8.1E-05 1.8E-09 66.1 13.1 30 264-302 194-223 (277)
23 PF03718 Glyco_hydro_49: Glyco 98.0 0.00096 2.1E-08 64.9 19.3 116 114-244 345-497 (582)
24 PF07602 DUF1565: Protein of u 98.0 0.00029 6.2E-09 63.0 14.8 118 19-170 14-144 (246)
25 PRK10123 wcaM putative colanic 97.9 0.00015 3.2E-09 65.2 11.9 33 2-45 33-65 (464)
26 PF13229 Beta_helix: Right han 97.8 0.00036 7.8E-09 57.4 11.2 116 114-244 2-120 (158)
27 TIGR03805 beta_helix_1 paralle 97.5 0.003 6.4E-08 59.1 13.9 72 114-189 79-157 (314)
28 PLN02480 Probable pectinestera 97.4 0.0074 1.6E-07 56.8 15.3 121 18-182 58-197 (343)
29 COG3420 NosD Nitrous oxidase a 97.3 0.044 9.6E-07 50.6 18.7 135 35-189 33-177 (408)
30 PF05048 NosD: Periplasmic cop 97.2 0.0088 1.9E-07 53.3 13.0 70 114-189 37-106 (236)
31 PF05048 NosD: Periplasmic cop 97.1 0.015 3.2E-07 51.9 13.9 121 35-189 6-128 (236)
32 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.0068 1.5E-07 58.3 12.2 117 68-189 136-267 (455)
33 COG3866 PelB Pectate lyase [Ca 97.1 0.22 4.7E-06 45.6 20.3 72 114-185 118-200 (345)
34 PF13229 Beta_helix: Right han 97.1 0.0023 5E-08 52.5 7.4 134 137-303 2-136 (158)
35 smart00656 Amb_all Amb_all dom 97.1 0.038 8.2E-07 47.8 15.2 70 114-183 33-114 (190)
36 PF14592 Chondroitinas_B: Chon 97.0 0.085 1.8E-06 50.8 18.4 44 19-65 3-47 (425)
37 PF12218 End_N_terminal: N ter 97.0 0.00085 1.8E-08 45.8 3.2 42 11-55 1-42 (67)
38 PLN02773 pectinesterase 96.6 0.59 1.3E-05 43.6 22.4 62 115-183 96-163 (317)
39 PF00544 Pec_lyase_C: Pectate 96.4 0.032 6.9E-07 48.7 10.2 68 118-185 43-130 (200)
40 COG3866 PelB Pectate lyase [Ca 96.4 0.057 1.2E-06 49.2 11.4 121 114-237 94-229 (345)
41 PRK10531 acyl-CoA thioesterase 96.2 0.18 3.9E-06 48.7 14.5 41 12-54 87-129 (422)
42 PLN02665 pectinesterase family 96.0 0.32 6.8E-06 46.3 15.1 125 19-183 79-220 (366)
43 PLN02432 putative pectinestera 95.9 0.43 9.4E-06 44.0 15.2 121 19-183 22-154 (293)
44 PF12708 Pectate_lyase_3: Pect 95.9 0.37 8E-06 41.9 14.4 44 146-189 94-140 (225)
45 PLN02682 pectinesterase family 95.8 0.54 1.2E-05 44.7 15.6 63 115-183 157-229 (369)
46 PLN02176 putative pectinestera 95.7 0.48 1.1E-05 44.6 15.0 128 13-183 45-189 (340)
47 PLN02634 probable pectinestera 95.5 0.8 1.7E-05 43.4 15.5 61 117-183 145-215 (359)
48 PF01095 Pectinesterase: Pecti 95.4 0.09 1.9E-06 48.8 8.9 133 18-185 10-150 (298)
49 PLN02713 Probable pectinestera 95.3 0.72 1.6E-05 46.5 15.4 62 116-183 335-401 (566)
50 PLN03043 Probable pectinestera 95.1 0.8 1.7E-05 46.0 15.0 133 14-183 230-374 (538)
51 PLN02933 Probable pectinestera 95.1 0.89 1.9E-05 45.4 15.2 132 18-183 228-366 (530)
52 PLN02304 probable pectinestera 95.1 1.3 2.8E-05 42.3 15.6 127 18-183 85-228 (379)
53 PLN02416 probable pectinestera 95.1 0.58 1.3E-05 46.9 13.9 127 18-183 240-378 (541)
54 PLN02708 Probable pectinestera 95.0 0.83 1.8E-05 46.0 14.9 128 18-183 251-391 (553)
55 smart00656 Amb_all Amb_all dom 94.9 0.063 1.4E-06 46.4 6.0 48 136-183 32-81 (190)
56 PLN02497 probable pectinestera 94.9 1 2.2E-05 42.3 14.3 127 13-183 38-183 (331)
57 PLN02671 pectinesterase 94.9 1 2.3E-05 42.6 14.4 61 116-183 149-219 (359)
58 PLN02170 probable pectinestera 94.8 1.7 3.8E-05 43.3 16.1 132 13-183 231-374 (529)
59 PLN02301 pectinesterase/pectin 94.7 1.3 2.8E-05 44.5 15.3 127 18-183 246-384 (548)
60 PLN02506 putative pectinestera 94.7 1.4 2.9E-05 44.3 15.3 63 115-183 313-380 (537)
61 PLN02995 Probable pectinestera 94.6 0.99 2.1E-05 45.3 14.1 62 116-183 307-373 (539)
62 PLN02197 pectinesterase 94.5 1.4 3E-05 44.6 15.0 62 116-183 359-425 (588)
63 PLN02916 pectinesterase family 94.4 1.7 3.7E-05 43.1 15.1 127 18-183 197-338 (502)
64 PLN02745 Putative pectinestera 94.2 1.7 3.8E-05 44.1 15.0 129 18-185 295-435 (596)
65 PLN02201 probable pectinestera 94.1 2.4 5.1E-05 42.4 15.4 130 14-183 213-354 (520)
66 PLN02468 putative pectinestera 94.0 1.5 3.3E-05 44.3 14.1 126 19-183 269-406 (565)
67 PLN02313 Pectinesterase/pectin 93.9 2 4.4E-05 43.6 14.9 130 18-183 285-423 (587)
68 PLN02484 probable pectinestera 93.7 2.6 5.6E-05 42.8 15.2 127 19-183 283-421 (587)
69 PLN02488 probable pectinestera 93.7 3 6.5E-05 41.3 15.1 127 18-183 207-345 (509)
70 PLN02990 Probable pectinestera 93.5 2.4 5.3E-05 42.9 14.6 62 116-183 342-408 (572)
71 PF00544 Pec_lyase_C: Pectate 93.5 0.29 6.3E-06 42.7 7.1 60 121-183 21-96 (200)
72 PLN02314 pectinesterase 92.9 4.6 0.0001 41.1 15.5 63 115-183 359-426 (586)
73 COG4677 PemB Pectin methyleste 92.8 2.8 6E-05 38.9 12.4 63 116-183 184-266 (405)
74 PLN02217 probable pectinestera 92.7 3.9 8.5E-05 42.1 14.7 113 18-158 260-379 (670)
75 TIGR03804 para_beta_helix para 90.9 0.36 7.8E-06 30.8 3.5 39 138-181 2-40 (44)
76 PF01696 Adeno_E1B_55K: Adenov 89.0 22 0.00047 34.1 16.3 57 119-181 119-176 (386)
77 COG3420 NosD Nitrous oxidase a 87.9 10 0.00022 35.5 11.7 17 114-130 152-168 (408)
78 PRK10123 wcaM putative colanic 78.8 5.1 0.00011 36.6 5.7 99 114-214 261-373 (464)
79 TIGR03804 para_beta_helix para 75.4 8 0.00017 24.4 4.5 40 115-155 2-41 (44)
80 PF03211 Pectate_lyase: Pectat 73.4 64 0.0014 28.4 13.2 33 121-155 61-93 (215)
81 PF09251 PhageP22-tail: Salmon 64.1 43 0.00092 32.5 8.4 66 170-235 263-348 (549)
82 PF09251 PhageP22-tail: Salmon 60.5 74 0.0016 30.9 9.2 59 142-214 262-344 (549)
83 PF14592 Chondroitinas_B: Chon 43.9 1.3E+02 0.0029 29.3 8.4 113 114-244 217-329 (425)
84 smart00710 PbH1 Parallel beta- 42.3 32 0.00069 18.0 2.5 14 171-184 2-15 (26)
85 PF03211 Pectate_lyase: Pectat 40.9 60 0.0013 28.6 5.0 39 145-189 62-101 (215)
86 PF08480 Disaggr_assoc: Disagg 40.4 1.3E+02 0.0027 25.9 6.7 62 121-182 2-75 (198)
87 PLN02773 pectinesterase 30.7 3.5E+02 0.0076 25.4 8.7 79 141-237 99-183 (317)
88 PF01095 Pectinesterase: Pecti 28.3 4.8E+02 0.01 24.1 11.5 133 142-302 85-234 (298)
89 smart00722 CASH Domain present 28.0 2.2E+02 0.0049 22.0 6.4 67 118-187 73-143 (146)
90 TIGR02837 spore_II_R stage II 27.3 69 0.0015 27.0 3.1 8 87-94 143-150 (168)
91 PF07602 DUF1565: Protein of u 24.7 5.2E+02 0.011 23.3 9.1 75 114-189 116-194 (246)
92 PF02741 FTR_C: FTR, proximal 22.6 69 0.0015 26.3 2.2 33 19-53 111-145 (150)
93 COG0336 TrmD tRNA-(guanine-N1) 22.0 77 0.0017 28.2 2.5 44 3-47 35-92 (240)
94 PF08118 MDM31_MDM32: Yeast mi 21.4 2.8E+02 0.006 27.8 6.4 46 41-90 150-198 (503)
95 PLN02217 probable pectinestera 20.8 9.8E+02 0.021 25.0 13.6 62 142-214 335-397 (670)
96 PF07157 DNA_circ_N: DNA circu 20.6 1.6E+02 0.0034 22.3 3.7 39 5-43 40-85 (93)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.2e-71 Score=526.17 Aligned_cols=322 Identities=51% Similarity=0.962 Sum_probs=288.4
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccccceEEE---c-------------
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITI---H------------- 65 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~~~~itl---g------------- 65 (331)
++|||+||||++||++|||+|||+||++||++.+|++|+||+|+|++++|.|+++|++ +++| |
T Consensus 26 ~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~~~~~~ 104 (394)
T PLN02155 26 NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDYRTFGN 104 (394)
T ss_pred cEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccccccccc
Confidence 5899999999999999999999999987899889999999999999999999665543 3544 1
Q ss_pred cceeEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceec
Q 047296 66 AGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHN 145 (331)
Q Consensus 66 ~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~n 145 (331)
...|+.+.+.+++.|+||+|||+|+.||+....+ ..++.+|+ +|.|.+|++++|+|++++|||+|++++..|++
T Consensus 105 ~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~-----~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~n 178 (394)
T PLN02155 105 SGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVR-----SISFNSAKDVIISGVKSMNSQVSHMTLNGCTN 178 (394)
T ss_pred cceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCccc-----ceeEEEeeeEEEECeEEEcCCCeEEEEECeee
Confidence 1358999999999999999999999999865433 34455778 99999999999999999999999999999999
Q ss_pred EEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccccccEEE
Q 047296 146 VKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQN 209 (331)
Q Consensus 146 v~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v~n 209 (331)
|+|++++|.++.+++|+||||+.+|+||+|+||+|.+||||||+ |||++|||+|+++..+.|+|
T Consensus 179 v~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~n 258 (394)
T PLN02155 179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN 258 (394)
T ss_pred EEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEE
Confidence 99999999999888999999999999999999999999999999 79999999988765688999
Q ss_pred EEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEee
Q 047296 210 VTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSV 276 (331)
Q Consensus 210 v~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~ 276 (331)
|+|+| +|++.++|.|+||+|+||+|+++++||.|++.|++....|+...+.+.|+||+|+||+++..
T Consensus 259 V~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~ 338 (394)
T PLN02155 259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSA 338 (394)
T ss_pred EEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEec
Confidence 99998 57655789999999999999999999999999986544465556678999999999999988
Q ss_pred cceEEEEecCCCCceeeEEEEeEEEEeCC-CCCcceeecceecccceecCCCCCC
Q 047296 277 TKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSASGFVQPNSCLR 330 (331)
Q Consensus 277 ~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~~~~~~C~~v~~~~~~~~~p~~c~~ 330 (331)
...++.|.|++..||+||+|+||+++..+ .+..+.|+|+++...+++.|++|++
T Consensus 339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred CCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 66789999999999999999999999876 4568999999999999889999986
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6.4e-70 Score=518.35 Aligned_cols=317 Identities=38% Similarity=0.707 Sum_probs=282.6
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCe-EEEEEEEEecccccceEEE---c------------
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGR-YLLHNVVFQGQCRNNDITI---H------------ 65 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~-y~~~~l~l~~~~~~~~itl---g------------ 65 (331)
++|||+||||++||++|||+|||+||++||++.+|++|+||+|+ |++++|.|+++|.+..+++ |
T Consensus 22 ~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~~~w~~ 101 (456)
T PLN03003 22 NALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKG 101 (456)
T ss_pred eEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCccccccC
Confidence 46999999999999999999999999988998889999999995 8899999998775433443 1
Q ss_pred -cceeEEEeeeeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEece
Q 047296 66 -AGNWILFEHVNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGC 143 (331)
Q Consensus 66 -~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~ 143 (331)
...||+|.++++++|+| |+|||+|+.||+.. ..||+ ++.|.+|+|++|+|++++|||+|++++..|
T Consensus 102 ~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-------~~rP~-----~l~f~~~~nv~I~gitl~NSp~w~i~i~~c 169 (456)
T PLN03003 102 DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-------GSRPT-----ALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169 (456)
T ss_pred CCcceEEEEcccceEEeccceEeCCchhhhhcc-------cCCce-----EEEEEecCCcEEeCeEEecCCcEEEEEecc
Confidence 24589999999999999 99999999999742 24799 999999999999999999999999999999
Q ss_pred ecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccccccE
Q 047296 144 HNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGV 207 (331)
Q Consensus 144 ~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v 207 (331)
++++|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++ ||||+|||+|+++....|
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 9999999999999888999999999999999999999999999999 899999999887655789
Q ss_pred EEEEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCC--CCCCCCCceeEEeEEEEeEE
Q 047296 208 QNVTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNK--NCPGKASGVKISDVTYQDIH 272 (331)
Q Consensus 208 ~nv~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nI~f~nI~ 272 (331)
+||+|+| +|++ +.|.++||+|+||+|+++.+||.|+++|++... .|....+.+.|+||+|+||+
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~ 328 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFI 328 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEE
Confidence 9999999 5765 678999999999999999999999999985322 13344567999999999999
Q ss_pred EEeecceEEEEecCCCCceeeEEEEeEEEEeCC----CCCcceeecceecccceecCCCCCCC
Q 047296 273 GTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKN----QPAEASCRNADVSASGFVQPNSCLRL 331 (331)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~----~~~~~~C~~v~~~~~~~~~p~~c~~~ 331 (331)
++.....++.|.|++..||+||+|+||++++.. +++.+.|+||++...++..|++|+.+
T Consensus 329 GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~ 391 (456)
T PLN03003 329 GTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLEL 391 (456)
T ss_pred EEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcccc
Confidence 998777789999999999999999999999762 34689999999999998888899864
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.6e-69 Score=519.32 Aligned_cols=322 Identities=37% Similarity=0.721 Sum_probs=284.7
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCe-EEEEEEEEecccccceEEE---c------------
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGR-YLLHNVVFQGQCRNNDITI---H------------ 65 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~-y~~~~l~l~~~~~~~~itl---g------------ 65 (331)
++|||+||||++||++|||+|||+||++||++.+|++|+||+|+ |++++|.|.+.|++ +++| |
T Consensus 51 ~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 51 RVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred eEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHcc
Confidence 57999999999999999999999999878998899999999995 99999999544432 3444 1
Q ss_pred ---cceeEEEeeeeeEEEEc-eeeeCCCCceeeccc--CCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEE
Q 047296 66 ---AGNWILFEHVNGVYIYG-GILDGQGAGLWARKR--SGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVV 139 (331)
Q Consensus 66 ---~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~--~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~ 139 (331)
...||++.+.+|++|+| |+|||+|+.||+... .....+..||+ +|.|.+|+|++|+|++++|||+|+++
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~-----~i~f~~~~nv~v~gitl~nSp~~~i~ 204 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPT-----AITFHKCKDLRVENLNVIDSQQMHIA 204 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCce-----EEEEEeeccEEEECeEEEcCCCeEEE
Confidence 24689999999999999 999999999997421 11122345799 99999999999999999999999999
Q ss_pred EeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccc
Q 047296 140 INGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVH 203 (331)
Q Consensus 140 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~ 203 (331)
+..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++ ||||+|||+|++..
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~ 284 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNS 284 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCC
Confidence 99999999999999999888999999999999999999999999999999 79999999988765
Q ss_pred cccEEEEEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEe
Q 047296 204 EAGVQNVTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQD 270 (331)
Q Consensus 204 ~~~v~nv~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~n 270 (331)
.+.|+||+|+| +|++ ++|.|+||+|+||+|+++.+||.|+++|+.....|..+.+.+.|+||+|+|
T Consensus 285 ~~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~n 363 (443)
T PLN02793 285 WSEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVH 363 (443)
T ss_pred CCcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEE
Confidence 67899999999 5655 678999999999999999999999999986555565566788999999999
Q ss_pred EEEEeecceEEEEecCCCCceeeEEEEeEEEEeCC-CCCcceeecceecccceecCCCCCC
Q 047296 271 IHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSASGFVQPNSCLR 330 (331)
Q Consensus 271 I~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~~~~~~C~~v~~~~~~~~~p~~c~~ 330 (331)
|+++.....++.+.|+++.||+||+|+||+++..+ +.....|+|+++...|.+.|+||+.
T Consensus 364 I~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 364 IKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCcccc
Confidence 99998656689999999999999999999999875 5557899999999999999999974
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=2.5e-69 Score=512.56 Aligned_cols=324 Identities=41% Similarity=0.778 Sum_probs=283.4
Q ss_pred CcEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccccc-eEEE---c---------cc
Q 047296 1 MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNN-DITI---H---------AG 67 (331)
Q Consensus 1 ~~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~~~-~itl---g---------~~ 67 (331)
+++|||+||||++||++|||+|||+||++||++.||++|+||+|+|++++|+|+++|+++ +++| . ..
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l~L~~s~d~~~y~~~~ 113 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTFTLKAATDLSRYGSGN 113 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEEEEEcCCCHHHCCCcc
Confidence 468999999999999999999999999878998888999999999999999999777532 4444 1 13
Q ss_pred eeEEEeeeeeEEEEc-eeeeCCCCceeecccC-CCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceec
Q 047296 68 NWILFEHVNGVYIYG-GILDGQGAGLWARKRS-GNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHN 145 (331)
Q Consensus 68 ~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~-~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~n 145 (331)
.|+.+..++||+|+| |+|||+|+.||+.... ..+.+..||+ +|.|.+|+|++|+|++++|||+|++++..|++
T Consensus 114 ~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~-----~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 114 DWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPT-----SVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred ceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCce-----EEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 589898899999999 9999999999974321 0123456899 99999999999999999999999999999999
Q ss_pred EEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCcccccccEEE
Q 047296 146 VKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQN 209 (331)
Q Consensus 146 v~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v~n 209 (331)
|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++ ||||+|||+|++...+.|+|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999999888999999999999999999999999999999 89999999987655678999
Q ss_pred EEEEe-------------eeCC-CCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEe
Q 047296 210 VTVKY-------------SWGR-PSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTS 275 (331)
Q Consensus 210 v~i~n-------------~~~~-~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~ 275 (331)
|+|+| +|.+ .+.|.++||+|+||+|+++++||.|++.|++.....+...+.+.|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 99999 5654 346899999999999999999999999998643311223456899999999999998
Q ss_pred ecceEEEEecCCCCceeeEEEEeEEEEeCC--CCCcceeecceecccceecCCCCC
Q 047296 276 VTKVVVKIDCSQKYPCSGIKFEDVKLIYKN--QPAEASCRNADVSASGFVQPNSCL 329 (331)
Q Consensus 276 ~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~--~~~~~~C~~v~~~~~~~~~p~~c~ 329 (331)
....++.+.|+++.||+||+|+||+++.++ +...+.|+|+++...|++.|++|.
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 766789999999999999999999999874 346799999999999999999994
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.3e-68 Score=503.85 Aligned_cols=308 Identities=37% Similarity=0.737 Sum_probs=278.2
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCC-CcEEEeCCC-eEEEEEEEEecccccceEEE---c-----------
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTA-ASTIYVPPG-RYLLHNVVFQGQCRNNDITI---H----------- 65 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~-g~~v~iP~G-~y~~~~l~l~~~~~~~~itl---g----------- 65 (331)
++|||+||||++||++|||+|||+||++||+..+ +++|+||+| +|++++|.|+++|++.+++| |
T Consensus 45 ~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w 124 (409)
T PLN03010 45 QNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAW 124 (409)
T ss_pred cEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhc
Confidence 5799999999999999999999999987886432 379999999 79999999998765434555 1
Q ss_pred ----cceeEEEeeeeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEE
Q 047296 66 ----AGNWILFEHVNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVI 140 (331)
Q Consensus 66 ----~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~ 140 (331)
...|+.+.+++|++|+| |+|||+|+.||+ ++.|.+|+|++|+|++++|+|+|++++
T Consensus 125 ~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------------~l~~~~~~nv~v~gitl~nsp~~~i~i 185 (409)
T PLN03010 125 SNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------------ALHISKCDNLTINGITSIDSPKNHISI 185 (409)
T ss_pred cCCCCcceEEEecccccEEeeceEEeCCCccccc-------------------eEEEEeecCeEEeeeEEEcCCceEEEE
Confidence 13589999999999999 999999999994 689999999999999999999999999
Q ss_pred eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCccccc
Q 047296 141 NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHE 204 (331)
Q Consensus 141 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~ 204 (331)
..|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++ ||||+|||+|.....
T Consensus 186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~ 265 (409)
T PLN03010 186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGAN 265 (409)
T ss_pred eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCC
Confidence 9999999999999999888999999999999999999999999999999 899999999887655
Q ss_pred ccEEEEEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeE
Q 047296 205 AGVQNVTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDI 271 (331)
Q Consensus 205 ~~v~nv~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI 271 (331)
..|+||+|+| +|++ +.|.|+||+|+||+|+++++||.|+++|+.....|..+.+...|+||+|+||
T Consensus 266 ~~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni 344 (409)
T PLN03010 266 AKVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGF 344 (409)
T ss_pred CeeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEee
Confidence 6799999999 5654 6789999999999999999999999999875555666678899999999999
Q ss_pred EEEeecceEEEEecCCCCceeeEEEEeEEEEeCC-CCCcceeecceecccceecCCCCC
Q 047296 272 HGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKN-QPAEASCRNADVSASGFVQPNSCL 329 (331)
Q Consensus 272 ~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~~~~~~C~~v~~~~~~~~~p~~c~ 329 (331)
+++.....++.|.|++..||+||+|+||+++.++ +.+...|.|+++...+...|++|+
T Consensus 345 ~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 345 RGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred EEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 9998777799999999999999999999999876 567899999999999999999997
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=4.7e-68 Score=507.09 Aligned_cols=316 Identities=41% Similarity=0.811 Sum_probs=277.7
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCC-eEEEEEEEEeccccc-ceEEEc--------------
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPG-RYLLHNVVFQGQCRN-NDITIH-------------- 65 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G-~y~~~~l~l~~~~~~-~~itlg-------------- 65 (331)
++|||+||||++||++|||+|||+||++||++.|+++|+||+| +|++++|.|++++++ ..+.|+
T Consensus 66 ~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~y~~ 145 (431)
T PLN02218 66 TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYKD 145 (431)
T ss_pred cEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhhccc
Confidence 6899999999999999999999999988899888899999999 699999999876653 123331
Q ss_pred cceeEEEeeeeeEEEEc---eeeeCCCCceeeccc--CCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEE
Q 047296 66 AGNWILFEHVNGVYIYG---GILDGQGAGLWARKR--SGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVI 140 (331)
Q Consensus 66 ~~~~i~~~~~~ni~I~G---G~idg~g~~~~~~~~--~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~ 140 (331)
...||.+.+.+||+|+| |+|||+|+.||+... .....+..||+ ++.|.+|+|++|+||+++|||+|++++
T Consensus 146 ~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~-----~i~f~~~~nv~I~gitl~nSp~w~i~~ 220 (431)
T PLN02218 146 ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPT-----ALTFYNSKSLIVKNLRVRNAQQIQISI 220 (431)
T ss_pred cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCE-----EEEEEccccEEEeCeEEEcCCCEEEEE
Confidence 23689999999999999 999999999997432 11123446899 999999999999999999999999999
Q ss_pred eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe----------------ecceEecccCccccc
Q 047296 141 NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV----------------GHGISIGSLGKEVHE 204 (331)
Q Consensus 141 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~ 204 (331)
..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++ ||||+|||+|.+...
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~ 300 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSK 300 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCC
Confidence 9999999999999999888999999999999999999999999999999 899999999876556
Q ss_pred ccEEEEEEEe-------------eeCCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeE
Q 047296 205 AGVQNVTVKY-------------SWGRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDI 271 (331)
Q Consensus 205 ~~v~nv~i~n-------------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI 271 (331)
..|+||+|+| +|++ ++|.|+||+|+||+|+++++||.|++.|++.. .|+.+.+.+.|+||+|+||
T Consensus 301 ~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~NI 378 (431)
T PLN02218 301 AFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRNI 378 (431)
T ss_pred ceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEEeE
Confidence 7899999999 5654 77999999999999999999999999998643 3555567889999999999
Q ss_pred EEEeecceEEEEecCCCCceeeEEEEeEEEEeCCCCCcceeecceecccceecCCCCC
Q 047296 272 HGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQPAEASCRNADVSASGFVQPNSCL 329 (331)
Q Consensus 272 ~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~C~~v~~~~~~~~~p~~c~ 329 (331)
+++.....++.+.|+++.||+||+|+||++.. ....|+||++...|.+.| .|.
T Consensus 379 ~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~----~~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 379 SGTSASDVAITFNCSKNYPCQGIVLDNVNIKG----GKATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEecCCcEEEEEECCCCCEeeEEEEeEEEEC----CeeeEEEeeEEEcccCCC-CCC
Confidence 99987667899999999999999999999984 256899999999996555 884
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=3.6e-52 Score=389.12 Aligned_cols=280 Identities=38% Similarity=0.697 Sum_probs=233.5
Q ss_pred hccCCCcEEEeCCCeEEEEEEEEecccc-cceEEE------c-------cceeEEEeeeeeEEEEc-eeeeCCCCceeec
Q 047296 31 CGSTAASTIYVPPGRYLLHNVVFQGQCR-NNDITI------H-------AGNWILFEHVNGVYIYG-GILDGQGAGLWAR 95 (331)
Q Consensus 31 c~~~~g~~v~iP~G~y~~~~l~l~~~~~-~~~itl------g-------~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~ 95 (331)
|++.++++|+||+|+|+++++.|++.+. ...++| . ...||++.+++|++|+| |+|||+|+.||+.
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPNSALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE-SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCccEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 7777788999999999999999986322 234555 1 25789999999999999 9999999999985
Q ss_pred ccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEE
Q 047296 96 KRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTI 175 (331)
Q Consensus 96 ~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I 175 (331)
..........||+ ++.|.+|++++|+|++++++|+|++++..|++++|++++|.++.+.+|+|||++.+|+||+|
T Consensus 81 ~~~~~~~~~~rp~-----~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 81 SGDANNNGQRRPR-----LIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp CTTHCCSSSSSSE-----SEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred ccccccccccccc-----eeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 5321023456899 99999999999999999999999999999999999999999987779999999999999999
Q ss_pred EeeEEccCCCeEEe----------------ecceEecccCcccccccEEEEEEEe-------------eeCCCCCceEEE
Q 047296 176 LNARIGTGDDCVSV----------------GHGISIGSLGKEVHEAGVQNVTVKY-------------SWGRPSTGFSRN 226 (331)
Q Consensus 176 ~n~~i~~gDD~i~i----------------~~Gi~iGs~g~~~~~~~v~nv~i~n-------------~~~~~~~g~v~n 226 (331)
+||+|.++|||||+ +||++|||++.......|+||+|+| +|+ .+.|.|+|
T Consensus 156 ~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~-~~~G~v~n 234 (326)
T PF00295_consen 156 ENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP-GGGGYVSN 234 (326)
T ss_dssp ESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET-TTSEEEEE
T ss_pred EEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec-ccceEEec
Confidence 99999999999999 7899999998654334699999999 454 37899999
Q ss_pred EEEEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecceEEEEecCCCCceeeEEEEeEEEEeCCC
Q 047296 227 ILFQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLIYKNQ 306 (331)
Q Consensus 227 I~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~ 306 (331)
|+||||+|+++.+||.|++.|... ..+..+...+.|+||+|+||+++.....++.+.|.+..||+||+|+||+|+. +
T Consensus 235 I~f~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g 311 (326)
T PF00295_consen 235 ITFENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--G 311 (326)
T ss_dssp EEEEEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--S
T ss_pred eEEEEEEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--C
Confidence 999999999999999999999872 2333345667999999999999988767899999999999999999999997 3
Q ss_pred CCcceeecceecc
Q 047296 307 PAEASCRNADVSA 319 (331)
Q Consensus 307 ~~~~~C~~v~~~~ 319 (331)
...+.|+|++...
T Consensus 312 ~~~~~c~nv~~~~ 324 (326)
T PF00295_consen 312 KKPAQCKNVPSGI 324 (326)
T ss_dssp BSESEEBSCCTT-
T ss_pred CcCeEEECCCCCC
Confidence 6789999997643
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.5e-35 Score=282.05 Aligned_cols=253 Identities=25% Similarity=0.423 Sum_probs=192.5
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccc---cceEEE-c------cc----
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCR---NNDITI-H------AG---- 67 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~---~~~itl-g------~~---- 67 (331)
..++|.+|||++||.+++++|||+||+ +|++++|++|+||+|+|+.++|+|||++. ...-|| . +.
T Consensus 81 t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~~~~~ 159 (542)
T COG5434 81 TAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYPSFTS 159 (542)
T ss_pred ceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcccccc
Confidence 468999999999999999999999996 68888999999999999999999999632 000011 0 00
Q ss_pred -------eeEE-----------------------EeeeeeEE-EEc-eeeeCCC----Cceeeccc--CCCC-CCCCCCc
Q 047296 68 -------NWIL-----------------------FEHVNGVY-IYG-GILDGQG----AGLWARKR--SGNN-NCPSGAK 108 (331)
Q Consensus 68 -------~~i~-----------------------~~~~~ni~-I~G-G~idg~g----~~~~~~~~--~~~~-~~~~~p~ 108 (331)
+.++ ....+|.. |.| |+++|++ ..||.... ..+. ..+.||.
T Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~~~~~rp~ 239 (542)
T COG5434 160 RFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPR 239 (542)
T ss_pred ccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcccccCcCCc
Confidence 1111 11233444 788 8898875 22664332 1000 0114788
Q ss_pred ccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEE
Q 047296 109 ESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVS 188 (331)
Q Consensus 109 ~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~ 188 (331)
.+.|..|+|++++|+++.++|.|++|+..|++++++|++|.+.... |+||+++.+|+||+|++|+|.++||||+
T Consensus 240 -----~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~ 313 (542)
T COG5434 240 -----TVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIA 313 (542)
T ss_pred -----eEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEE
Confidence 9999999999999999999999999999999999999999997654 9999999999999999999999999999
Q ss_pred eecc--eEecccCcccccccEEEEEEEeee----------CCCCCceEEEEEEEeeeecCCCccEEEEeecCCCCCCCCC
Q 047296 189 VGHG--ISIGSLGKEVHEAGVQNVTVKYSW----------GRPSTGFSRNILFQHAVMKSVDNPIVIDQNYCRDNKNCPG 256 (331)
Q Consensus 189 i~~G--i~iGs~g~~~~~~~v~nv~i~n~~----------~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 256 (331)
+..| ...+.. ...-+||.|+|.+ ....+|.|+||++||+.|.+...+++|+....
T Consensus 314 iksg~~~~~~~~-----~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 314 IKSGAGLDGKKG-----YGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred eecccCCccccc-----ccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 9443 222222 2356778887721 12357789999999999999888999975433
Q ss_pred CCCceeEEeEEEEeEEEEee
Q 047296 257 KASGVKISDVTYQDIHGTSV 276 (331)
Q Consensus 257 ~~~~~~i~nI~f~nI~~~~~ 276 (331)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 236889999998887765
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.90 E-value=8.1e-23 Score=192.23 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=136.0
Q ss_pred CcEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEecccccceEEE------------ccce
Q 047296 1 MVTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQGQCRNNDITI------------HAGN 68 (331)
Q Consensus 1 ~~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~~~~~~~itl------------g~~~ 68 (331)
++.+|+++|||++||++|+|+|||+||++ |+ .++++|.||+|+|+.++|.|+++ ++| +...
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa-~gG~tV~Lp~G~Y~~G~L~L~sp-----ltL~G~~gAt~~vIdG~~~ 107 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDE-AA-RAQTPLALPPGVYRTGPLRLPSG-----AQLIGVRGATRLVFTGGPS 107 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHH-hh-cCCCEEEECCCceecccEEECCC-----cEEEecCCcEEEEEcCCce
Confidence 46789999999999999999999999975 45 35689999999999999999985 555 1244
Q ss_pred eEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEE
Q 047296 69 WILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKV 148 (331)
Q Consensus 69 ~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i 148 (331)
.+....+++|+|+|-+|+|.|..| ..+|. +|++..|++++|++++|.++..|++.+..|+ ..|
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl-----------~~rdA-----gI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I 170 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPL-----------PQRRG-----LIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDI 170 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcc-----------cCCCC-----EEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceE
Confidence 566778999999999999999644 23677 8999999999999999999999999999998 778
Q ss_pred EEEEEEcCCCCCCCCeEeccCcccEEEEeeEEcc-CCCeEEe
Q 047296 149 QGMRVSASGNSPNTDGIHVQSSSDVTILNARIGT-GDDCVSV 189 (331)
Q Consensus 149 ~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~i~i 189 (331)
.+.+|... ...+|++..+++.+|++++|.. .|++|.+
T Consensus 171 ~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 171 SGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIEI 208 (455)
T ss_pred ecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeEE
Confidence 88888774 3445999999999999999986 6777776
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.77 E-value=9.1e-18 Score=148.52 Aligned_cols=53 Identities=36% Similarity=0.608 Sum_probs=41.9
Q ss_pred EEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEE-EEEEecc
Q 047296 3 TYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLH-NVVFQGQ 56 (331)
Q Consensus 3 ~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~-~l~l~~~ 56 (331)
.+||+||||++||++|||+|||+||+++ +..++++|+||+|+|++. +|.++++
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~s~ 54 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIPSN 54 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-TT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcCCC
Confidence 3799999999999999999999999544 667899999999999996 4999874
No 11
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.74 E-value=1.1e-15 Score=145.53 Aligned_cols=144 Identities=20% Similarity=0.352 Sum_probs=85.4
Q ss_pred CcEEEeCCCeEEEEE---EEEecccccceEEE--c---cceeEEEeeeeeEEEEc-eeeeCCCCceeecccC------CC
Q 047296 36 ASTIYVPPGRYLLHN---VVFQGQCRNNDITI--H---AGNWILFEHVNGVYIYG-GILDGQGAGLWARKRS------GN 100 (331)
Q Consensus 36 g~~v~iP~G~y~~~~---l~l~~~~~~~~itl--g---~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~------~~ 100 (331)
..+|||+||+|.++. +.|++++ +.|-| | .+.+.+....+|+.|.| |+|.|.-..|.+.... +.
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~--~~VYlApGAyVkGAf~~~~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A 309 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNT--KWVYLAPGAYVKGAFEYTDTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGA 309 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT----EEEE-TTEEEES-EEE---SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC
T ss_pred cceEEeCCceEEeCCCccEEECCCc--cEEEEcCCcEEEEEEEEccCCceEEEEeeEEEcCcceeEeccCCCCccccccc
Confidence 369999999999974 8998752 24555 2 45565566889999999 9999987766332211 00
Q ss_pred CCCCC-CCcccceeEEEE---EeecceEEeceEEeCCCceEEEEecee----cEEEEEEEEEcCCCCCCCCeEeccCccc
Q 047296 101 NNCPS-GAKESWKIILGF---SNSNNILINGLTSQNSQMFHVVINGCH----NVKVQGMRVSASGNSPNTDGIHVQSSSD 172 (331)
Q Consensus 101 ~~~~~-~p~~~~~~~i~~---~~~~nv~I~~v~i~~s~~~~i~~~~~~----nv~i~n~~i~~~~~~~n~DGi~~~~s~n 172 (331)
..+++ .-+ ++.+ ..+.++.++|++|.++|+|.+.+...+ ...|+|.++...+. .++|||.+. ++
T Consensus 310 ~~~~~~~lk-----m~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDGi~ly--~n 381 (582)
T PF03718_consen 310 VKCHRESLK-----MLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDGIELY--PN 381 (582)
T ss_dssp ---TTTB-------SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT----B----TT
T ss_pred cccchhhhh-----hhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCCcccc--CC
Confidence 11111 112 4443 355699999999999999999999655 48999999998654 699999997 57
Q ss_pred EEEEeeEEccCCCeEEe
Q 047296 173 VTILNARIGTGDDCVSV 189 (331)
Q Consensus 173 V~I~n~~i~~gDD~i~i 189 (331)
-+|+||++++.||+|.+
T Consensus 382 S~i~dcF~h~nDD~iKl 398 (582)
T PF03718_consen 382 STIRDCFIHVNDDAIKL 398 (582)
T ss_dssp -EEEEEEEEESS-SEE-
T ss_pred CeeeeeEEEecCchhhe
Confidence 88899999999999877
No 12
>PLN02793 Probable polygalacturonase
Probab=99.56 E-value=4.8e-13 Score=129.29 Aligned_cols=165 Identities=20% Similarity=0.295 Sum_probs=121.5
Q ss_pred eEEEeeeeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCC----ceEEEEece
Q 047296 69 WILFEHVNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQ----MFHVVINGC 143 (331)
Q Consensus 69 ~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~----~~~i~~~~~ 143 (331)
+|.+.+++|++|+| -..+. |. | .+++..|+|++|+++++.++. ..++++..|
T Consensus 179 ~i~f~~~~nv~v~gitl~nS-------------------p~--~--~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDS-------------------QQ--M--HIAFTNCRRVTISGLKVIAPATSPNTDGIHISAS 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcC-------------------CC--e--EEEEEccCcEEEEEEEEECCCCCCCCCcEeeecc
Confidence 46777888888888 44321 22 3 799999999999999998643 347999999
Q ss_pred ecEEEEEEEEEcCCCCCCCCeEecc-CcccEEEEeeEEccCCCeEEe-------------------------ecceEecc
Q 047296 144 HNVKVQGMRVSASGNSPNTDGIHVQ-SSSDVTILNARIGTGDDCVSV-------------------------GHGISIGS 197 (331)
Q Consensus 144 ~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~i~i-------------------------~~Gi~iGs 197 (331)
+||+|+|++|.+. .|.|.+. +|+||+|+||.+..|. +|++ ..|+.|.+
T Consensus 236 ~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt 309 (443)
T PLN02793 236 RGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKT 309 (443)
T ss_pred ceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEE
Confidence 9999999999985 4567775 5888888888886654 3555 34778887
Q ss_pred cCcccccccEEEEEEEe--------------eeCC--------CCCceEEEEEEEeeeecCCC-ccEEEEeecCCCCCCC
Q 047296 198 LGKEVHEAGVQNVTVKY--------------SWGR--------PSTGFSRNILFQHAVMKSVD-NPIVIDQNYCRDNKNC 254 (331)
Q Consensus 198 ~g~~~~~~~v~nv~i~n--------------~~~~--------~~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~ 254 (331)
..+. .+.++||+|+| .|.. .....|+||+|+||+.+... .++.+. +.
T Consensus 310 ~~g~--~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~---cs----- 379 (443)
T PLN02793 310 WQGG--SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFA---CS----- 379 (443)
T ss_pred eCCC--CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEE---eC-----
Confidence 6332 35799999999 1211 12246999999999998753 466664 21
Q ss_pred CCCCCceeEEeEEEEeEEEEee
Q 047296 255 PGKASGVKISDVTYQDIHGTSV 276 (331)
Q Consensus 255 ~~~~~~~~i~nI~f~nI~~~~~ 276 (331)
+..+++||+|+||+++..
T Consensus 380 ----~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 380 ----DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred ----CCCCEeeEEEEeeEEEec
Confidence 234799999999999854
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.56 E-value=3e-13 Score=126.81 Aligned_cols=165 Identities=24% Similarity=0.375 Sum_probs=122.6
Q ss_pred eeEEEeeeeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEEec
Q 047296 68 NWILFEHVNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVING 142 (331)
Q Consensus 68 ~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~~~ 142 (331)
.++.+.+++|++|+| -..+. |. | .+++..|+|++|+++++.+++. .++++..
T Consensus 93 ~~i~~~~~~~~~i~~i~~~ns-------------------p~--w--~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~ 149 (326)
T PF00295_consen 93 RLIRFNNCKNVTIEGITIRNS-------------------PF--W--HIHINDCDNVTISNITINNPANSPNTDGIDIDS 149 (326)
T ss_dssp ESEEEEEEEEEEEESEEEES--------------------SS--E--SEEEESEEEEEEESEEEEEGGGCTS--SEEEES
T ss_pred ceeeeeeecceEEEeeEecCC-------------------Ce--e--EEEEEccCCeEEcceEEEecCCCCCcceEEEEe
Confidence 358888999999999 33321 22 3 7899999999999999987643 4799999
Q ss_pred eecEEEEEEEEEcCCCCCCCCeEeccCcc-cEEEEeeEEccCCCeEEe-------------------------ecceEec
Q 047296 143 CHNVKVQGMRVSASGNSPNTDGIHVQSSS-DVTILNARIGTGDDCVSV-------------------------GHGISIG 196 (331)
Q Consensus 143 ~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~i~i-------------------------~~Gi~iG 196 (331)
|++|+|+|+.|.+. .|.|.+.+.+ ||+|+||.+..+.. +++ .+|+.|.
T Consensus 150 s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~ghG-isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iK 223 (326)
T PF00295_consen 150 SKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGHG-ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIK 223 (326)
T ss_dssp EEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSSE-EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEE
T ss_pred eeEEEEEEeecccc-----cCcccccccccceEEEeEEEecccc-ceeeeccCCccccEEEeEEEEEEEeeccceEEEEE
Confidence 99999999999984 4568877644 88888888876533 555 3467777
Q ss_pred ccCcccccccEEEEEEEe--------------eeCC-------CCCceEEEEEEEeeeecCCC-ccEEEEeecCCCCCCC
Q 047296 197 SLGKEVHEAGVQNVTVKY--------------SWGR-------PSTGFSRNILFQHAVMKSVD-NPIVIDQNYCRDNKNC 254 (331)
Q Consensus 197 s~g~~~~~~~v~nv~i~n--------------~~~~-------~~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~ 254 (331)
+.-. ..+.|+||+|+| .|.. .....++||+|+||+..... .++.+..
T Consensus 224 t~~~--~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~--------- 292 (326)
T PF00295_consen 224 TWPG--GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDC--------- 292 (326)
T ss_dssp EETT--TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE----------
T ss_pred Eecc--cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEE---------
Confidence 6521 246899999999 1221 12358999999999998776 5777652
Q ss_pred CCCCCceeEEeEEEEeEEEEe
Q 047296 255 PGKASGVKISDVTYQDIHGTS 275 (331)
Q Consensus 255 ~~~~~~~~i~nI~f~nI~~~~ 275 (331)
.+..+++||+|+||.++.
T Consensus 293 ---~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 293 ---SPGSPCSNITFENVNITG 310 (326)
T ss_dssp ---BTTSSEEEEEEEEEEEES
T ss_pred ---CCcCcEEeEEEEeEEEEc
Confidence 123479999999999987
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.55 E-value=9.4e-13 Score=126.75 Aligned_cols=164 Identities=13% Similarity=0.262 Sum_probs=120.7
Q ss_pred eEEEeeeeeEEEEceee-eCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCC---C-ceEEEEece
Q 047296 69 WILFEHVNGVYIYGGIL-DGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNS---Q-MFHVVINGC 143 (331)
Q Consensus 69 ~i~~~~~~ni~I~GG~i-dg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s---~-~~~i~~~~~ 143 (331)
+|.+.+++|++|+|-++ + .|. | .+++..|+|++|+++++.++ | ..++++..|
T Consensus 194 ~i~f~~~~nv~I~gitl~n-------------------Sp~--w--~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRN-------------------AQQ--I--QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEc-------------------CCC--E--EEEEEceeeEEEEEEEEeCCCCCCCCCcEeeccc
Confidence 36677888888888332 2 122 4 89999999999999999763 2 247999999
Q ss_pred ecEEEEEEEEEcCCCCCCCCeEecc-CcccEEEEeeEEccCCCeEEe-------------------------ecceEecc
Q 047296 144 HNVKVQGMRVSASGNSPNTDGIHVQ-SSSDVTILNARIGTGDDCVSV-------------------------GHGISIGS 197 (331)
Q Consensus 144 ~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~i~i-------------------------~~Gi~iGs 197 (331)
+||+|+|+.|.+. .|.|.+. +|+||+|+||++..+. +|++ ..|+.|.+
T Consensus 251 ~nV~I~n~~I~tG-----DDcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT 324 (431)
T PLN02218 251 QNIRVSNSIIGTG-----DDCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKT 324 (431)
T ss_pred ceEEEEccEEecC-----CceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEee
Confidence 9999999999985 4567776 4889999999997654 3555 24777877
Q ss_pred cCcccccccEEEEEEEe--------------eeCC-------CCCceEEEEEEEeeeecCCC-ccEEEEeecCCCCCCCC
Q 047296 198 LGKEVHEAGVQNVTVKY--------------SWGR-------PSTGFSRNILFQHAVMKSVD-NPIVIDQNYCRDNKNCP 255 (331)
Q Consensus 198 ~g~~~~~~~v~nv~i~n--------------~~~~-------~~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~ 255 (331)
.-++ .+.++||+|+| .|.. .....|+||+|+||+.+... .++.+. +.
T Consensus 325 ~~Gg--~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~---cs------ 393 (431)
T PLN02218 325 YQGG--SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFN---CS------ 393 (431)
T ss_pred cCCC--CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEE---EC------
Confidence 6332 36899999999 1211 12346999999999997653 456664 21
Q ss_pred CCCCceeEEeEEEEeEEEEe
Q 047296 256 GKASGVKISDVTYQDIHGTS 275 (331)
Q Consensus 256 ~~~~~~~i~nI~f~nI~~~~ 275 (331)
+..+++||+|+||.++.
T Consensus 394 ---~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 394 ---KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred ---CCCCEeeEEEEeEEEEC
Confidence 23479999999999974
No 15
>PLN02155 polygalacturonase
Probab=99.52 E-value=1.7e-12 Score=123.62 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=118.7
Q ss_pred eEEEeeeeeEEEEce-eeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCC----ceEEEEece
Q 047296 69 WILFEHVNGVYIYGG-ILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQ----MFHVVINGC 143 (331)
Q Consensus 69 ~i~~~~~~ni~I~GG-~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~----~~~i~~~~~ 143 (331)
.+.+.+++|++|.|= ..+ .|. | .+++..|+|++|+++++.++. ..++++..|
T Consensus 147 ~i~~~~~~nv~i~gitl~n-------------------Sp~--w--~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s 203 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMN-------------------SQV--S--HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFS 203 (394)
T ss_pred ceeEEEeeeEEEECeEEEc-------------------CCC--e--EEEEECeeeEEEEEEEEECCCCCCCCCccccccc
Confidence 367777888888882 221 122 4 899999999999999998643 247999999
Q ss_pred ecEEEEEEEEEcCCCCCCCCeEeccC-cccEEEEeeEEccCCCeEEe-------------------------ecceEecc
Q 047296 144 HNVKVQGMRVSASGNSPNTDGIHVQS-SSDVTILNARIGTGDDCVSV-------------------------GHGISIGS 197 (331)
Q Consensus 144 ~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nV~I~n~~i~~gDD~i~i-------------------------~~Gi~iGs 197 (331)
++|+|+|+.|.+.+ |.|.+.+ |+||+|+||.+..|. +|++ ..|+.|.+
T Consensus 204 ~nV~I~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT 277 (394)
T PLN02155 204 TGVTFTGSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKS 277 (394)
T ss_pred eeEEEEeeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEE
Confidence 99999999999854 5677763 678888888776543 3444 24678877
Q ss_pred cCcccccccEEEEEEEe--------------eeCC--------CCCceEEEEEEEeeeecCCC-ccEEEEeecCCCCCCC
Q 047296 198 LGKEVHEAGVQNVTVKY--------------SWGR--------PSTGFSRNILFQHAVMKSVD-NPIVIDQNYCRDNKNC 254 (331)
Q Consensus 198 ~g~~~~~~~v~nv~i~n--------------~~~~--------~~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~ 254 (331)
.... ..+.|+||+|+| .|.. .....++||+|+||+.+... .++.+. +
T Consensus 278 ~~~~-~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~---c------ 347 (394)
T PLN02155 278 WARP-STGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLV---C------ 347 (394)
T ss_pred ecCC-CCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEE---e------
Confidence 4211 136899999999 2311 01236999999999998763 466664 1
Q ss_pred CCCCCceeEEeEEEEeEEEEee
Q 047296 255 PGKASGVKISDVTYQDIHGTSV 276 (331)
Q Consensus 255 ~~~~~~~~i~nI~f~nI~~~~~ 276 (331)
.+..+++||+|+||+++..
T Consensus 348 ---~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 348 ---SKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred ---CCCCCEEEEEEEeeEEEec
Confidence 1234789999999999864
No 16
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.52 E-value=2.5e-12 Score=123.03 Aligned_cols=168 Identities=23% Similarity=0.306 Sum_probs=119.5
Q ss_pred eEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCC----ceEEEEecee
Q 047296 69 WILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQ----MFHVVINGCH 144 (331)
Q Consensus 69 ~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~----~~~i~~~~~~ 144 (331)
+|.+.+++|+.|.|-++- + .|. | .+++..|++++|+++++.++. ..++++..|+
T Consensus 157 ~i~f~~~~nv~i~gitl~---------------n---Sp~--w--~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~ 214 (404)
T PLN02188 157 SVKFVNMNNTVVRGITSV---------------N---SKF--F--HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSS 214 (404)
T ss_pred EEEEEeeeeEEEeCeEEE---------------c---CCC--e--EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcc
Confidence 467778888888883321 0 122 4 899999999999999997632 2479999999
Q ss_pred cEEEEEEEEEcCCCCCCCCeEecc-CcccEEEEeeEEccCCCeEEe-------------------------ecceEeccc
Q 047296 145 NVKVQGMRVSASGNSPNTDGIHVQ-SSSDVTILNARIGTGDDCVSV-------------------------GHGISIGSL 198 (331)
Q Consensus 145 nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~i~i-------------------------~~Gi~iGs~ 198 (331)
+|+|+|+.|.+. .|+|.+. +++||+|+|+.+..+. +|++ .+|+.|.++
T Consensus 215 nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~gh-GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~ 288 (404)
T PLN02188 215 GVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPGH-GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTW 288 (404)
T ss_pred cEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCCC-cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEe
Confidence 999999999985 4567775 4678888888776553 3554 247778775
Q ss_pred CcccccccEEEEEEEe--------------eeCC--------CCCceEEEEEEEeeeecCCC-ccEEEEeecCCCCCCCC
Q 047296 199 GKEVHEAGVQNVTVKY--------------SWGR--------PSTGFSRNILFQHAVMKSVD-NPIVIDQNYCRDNKNCP 255 (331)
Q Consensus 199 g~~~~~~~v~nv~i~n--------------~~~~--------~~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~ 255 (331)
......+.++||+|+| .|.. .....|+||+|+||+.+... .++.+. +
T Consensus 289 ~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~---c------- 358 (404)
T PLN02188 289 ANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLK---C------- 358 (404)
T ss_pred cCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEE---E-------
Confidence 3322246799999999 1210 12357999999999998753 456554 2
Q ss_pred CCCCceeEEeEEEEeEEEEee
Q 047296 256 GKASGVKISDVTYQDIHGTSV 276 (331)
Q Consensus 256 ~~~~~~~i~nI~f~nI~~~~~ 276 (331)
.+..+++||+|+||+++..
T Consensus 359 --s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 359 --SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred --CCCCCEeeEEEEeeEEEec
Confidence 1234789999999999754
No 17
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.52 E-value=4.7e-12 Score=117.86 Aligned_cols=125 Identities=26% Similarity=0.399 Sum_probs=77.3
Q ss_pred HHHHHHHHhccCCCcEEEeCCCeEEE-EEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCCceeecc
Q 047296 23 FLAAWAKACGSTAASTIYVPPGRYLL-HNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGAGLWARK 96 (331)
Q Consensus 23 iq~Ai~~ac~~~~g~~v~iP~G~y~~-~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~~~~~~~ 96 (331)
||+||++| ..|.+|+||+|+|.+ ++|.+.. ++++|+| | +||+.++..
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~--------------------~~Iti~G~g~~~tvid~~~~~~---- 53 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA--------------------DGVTIRGAGMDETILDFSGQVG---- 53 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC--------------------CCeEEEecCCCccEEecccCCC----
Confidence 69999865 568999999999996 5777752 3455555 3 255544310
Q ss_pred cCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCC---CCCCCeEeccCcccE
Q 047296 97 RSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGN---SPNTDGIHVQSSSDV 173 (331)
Q Consensus 97 ~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DGi~~~~s~nV 173 (331)
... .+ +..+++++|+++++.++..+++.+..|++++|+++++..... ....+||.+..|+++
T Consensus 54 ---------~~~-----~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v 118 (314)
T TIGR03805 54 ---------GAE-----GL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNV 118 (314)
T ss_pred ---------CCc-----eE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCE
Confidence 011 23 334677777777777766667777777777777776653211 123556766666777
Q ss_pred EEEeeEEccC-CCeEEe
Q 047296 174 TILNARIGTG-DDCVSV 189 (331)
Q Consensus 174 ~I~n~~i~~g-DD~i~i 189 (331)
+|++|+++.. |++|.+
T Consensus 119 ~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 119 LVEDSYVRGASDAGIYV 135 (314)
T ss_pred EEECCEEECCCcccEEE
Confidence 7777777653 334544
No 18
>PLN03010 polygalacturonase
Probab=99.50 E-value=3.4e-12 Score=121.86 Aligned_cols=182 Identities=17% Similarity=0.280 Sum_probs=124.3
Q ss_pred EEEEEeecceEEeceEE---eCCCce-EEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC-----C
Q 047296 114 ILGFSNSNNILINGLTS---QNSQMF-HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG-----D 184 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i---~~s~~~-~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g-----D 184 (331)
.+.|.+++|+.|.|-=. .....| .+.+..|++++|+++++.++... -+++..|++|+|++..|.+. -
T Consensus 132 wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NT 207 (409)
T PLN03010 132 WISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNT 207 (409)
T ss_pred eEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCC
Confidence 58899999999988322 233455 58899999999999999986432 38888999999999999863 3
Q ss_pred CeEEe---------------e-cceEecccCcccccccEEEEEEEe----eeCC----CCCceEEEEEEEeeeecCCCcc
Q 047296 185 DCVSV---------------G-HGISIGSLGKEVHEAGVQNVTVKY----SWGR----PSTGFSRNILFQHAVMKSVDNP 240 (331)
Q Consensus 185 D~i~i---------------~-~Gi~iGs~g~~~~~~~v~nv~i~n----~~~~----~~~g~v~nI~~~ni~~~~~~~~ 240 (331)
|+|-+ | ..|+|++-. ....|+++.... +.+. +....|+||+|+|+++.+..++
T Consensus 208 DGiDi~~s~nV~I~n~~I~~gDDcIaiksgs---~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~G 284 (409)
T PLN03010 208 DGIDISYSTNINIFDSTIQTGDDCIAINSGS---SNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNG 284 (409)
T ss_pred CceeeeccceEEEEeeEEecCCCeEEecCCC---CcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcc
Confidence 55555 1 125555421 011222222211 1111 1224599999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecceEEEEec---CC---------CCceeeEEEEeEEEEeCC-CC
Q 047296 241 IVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDC---SQ---------KYPCSGIKFEDVKLIYKN-QP 307 (331)
Q Consensus 241 i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~~~i~~---~~---------~~~~~ni~~~nv~i~~~~-~~ 307 (331)
++|+.... ..+.++||+|+||++.... .|+.|+- .. ...++||+|+|++-+... .+
T Consensus 285 irIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~ 353 (409)
T PLN03010 285 ARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENA 353 (409)
T ss_pred eEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCcc
Confidence 99987543 2358999999999999875 4666632 11 125799999999998655 34
Q ss_pred Ccceee
Q 047296 308 AEASCR 313 (331)
Q Consensus 308 ~~~~C~ 313 (331)
..+.|+
T Consensus 354 i~l~Cs 359 (409)
T PLN03010 354 ITLKCS 359 (409)
T ss_pred EEEEeC
Confidence 445543
No 19
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.50 E-value=4.8e-12 Score=121.79 Aligned_cols=177 Identities=22% Similarity=0.273 Sum_probs=126.6
Q ss_pred EEEEEeecceEEece-EE--eCCCce--------EEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEcc
Q 047296 114 ILGFSNSNNILINGL-TS--QNSQMF--------HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGT 182 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v-~i--~~s~~~--------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 182 (331)
.|.|.++++++|.|- +| +....| .+.+..|++++|+++++.++... .+++..|++|+|++.+|.+
T Consensus 106 wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~a 181 (456)
T PLN03003 106 WILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRINA 181 (456)
T ss_pred eEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEeC
Confidence 699999999999982 22 223334 48899999999999999986432 3888899999999999986
Q ss_pred C-----CCeEEe---------------e-cceEecccCcccccccEEEEEEEe---------eeCC----CCCceEEEEE
Q 047296 183 G-----DDCVSV---------------G-HGISIGSLGKEVHEAGVQNVTVKY---------SWGR----PSTGFSRNIL 228 (331)
Q Consensus 183 g-----DD~i~i---------------~-~Gi~iGs~g~~~~~~~v~nv~i~n---------~~~~----~~~g~v~nI~ 228 (331)
. -|+|-+ | ..|+|++- -+||+|+| +.+. +..+.|+||+
T Consensus 182 p~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~ 253 (456)
T PLN03003 182 PESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGPGHGISIGSLGKDGETATVENVC 253 (456)
T ss_pred CCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEECCCCeEEeeccCCCCcceEEEEE
Confidence 3 466655 1 13666542 35666666 1111 1134699999
Q ss_pred EEeeeecCCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecceEEEEecCC--------------CCceeeE
Q 047296 229 FQHAVMKSVDNPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQ--------------KYPCSGI 294 (331)
Q Consensus 229 ~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~~~i~~~~--------------~~~~~ni 294 (331)
++|+++.+..++++|+.... ..+.++||+|+||++..... |+.|+... ...++||
T Consensus 254 v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI 322 (456)
T PLN03003 254 VQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEVSKV 322 (456)
T ss_pred EEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEEEeE
Confidence 99999999999999987533 23589999999999998763 66663210 1257999
Q ss_pred EEEeEEEEeCCC-CCcceee
Q 047296 295 KFEDVKLIYKNQ-PAEASCR 313 (331)
Q Consensus 295 ~~~nv~i~~~~~-~~~~~C~ 313 (331)
+|+||+.+.... +..+.|+
T Consensus 323 ~f~NI~GTs~~~~ai~l~Cs 342 (456)
T PLN03003 323 VFSNFIGTSKSEYGVDFRCS 342 (456)
T ss_pred EEEeEEEEeCccceEEEEeC
Confidence 999999886552 3334444
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=5.5e-10 Score=109.26 Aligned_cols=141 Identities=26% Similarity=0.423 Sum_probs=105.8
Q ss_pred eEEEeeeeeEEEEc-eeeeCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc---eEEEEecee
Q 047296 69 WILFEHVNGVYIYG-GILDGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM---FHVVINGCH 144 (331)
Q Consensus 69 ~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~---~~i~~~~~~ 144 (331)
.+.+++++||.+.| .+.. .|. | .+++..|+|++++|+++.+... .++.+..|+
T Consensus 240 ~~~l~~c~NV~~~g~~i~n-------------------s~~--~--~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~ 296 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKN-------------------SPL--W--TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCS 296 (542)
T ss_pred eEEEeccceEEEeeeEecC-------------------CCc--E--EEeeecccCceecceEEECCCCCCCCccccccce
Confidence 35567777777777 3321 122 4 8999999999999999975433 479999999
Q ss_pred cEEEEEEEEEcCCCC------CCCCeE-eccCcccEEEEeeEEccCCCeEEeecc-eEecccCcccccccEEEEEEEe--
Q 047296 145 NVKVQGMRVSASGNS------PNTDGI-HVQSSSDVTILNARIGTGDDCVSVGHG-ISIGSLGKEVHEAGVQNVTVKY-- 214 (331)
Q Consensus 145 nv~i~n~~i~~~~~~------~n~DGi-~~~~s~nV~I~n~~i~~gDD~i~i~~G-i~iGs~g~~~~~~~v~nv~i~n-- 214 (331)
|+.|++++|++.+|. ...|+- ....+++++|+||.+..+ || +.+|||. .+.|+||+++|
T Consensus 297 NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-------hG~~v~Gse~----~ggv~ni~ved~~ 365 (542)
T COG5434 297 NVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-------HGGLVLGSEM----GGGVQNITVEDCV 365 (542)
T ss_pred eEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-------ccceEeeeec----CCceeEEEEEeee
Confidence 999999999997762 233322 234589999999999964 54 7788984 56888888888
Q ss_pred -----------eeCCCCCceEEEEEEEeeeecCCCccEEEE
Q 047296 215 -----------SWGRPSTGFSRNILFQHAVMKSVDNPIVID 244 (331)
Q Consensus 215 -----------~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~ 244 (331)
+. ..++|.++||+|+++.|.++..+..|.
T Consensus 366 ~~~~d~GLRikt~-~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 366 MDNTDRGLRIKTN-DGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eccCcceeeeeee-cccceeEEEEEEecccccCcccceeee
Confidence 22 235699999999999999996554443
No 21
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.16 E-value=1.6e-05 Score=70.48 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=56.0
Q ss_pred EEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCC---C--CCCe------EeccCcccEEEEeeEEccCC
Q 047296 116 GFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNS---P--NTDG------IHVQSSSDVTILNARIGTGD 184 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~---~--n~DG------i~~~~s~nV~I~n~~i~~gD 184 (331)
.|+.|++++++++++.+++-. +..|++++++|+.+.+..-+ . --|| ..+.+++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 577889999999998777643 33566777777777432100 0 1122 33445777777777776655
Q ss_pred CeEEeecceEecccCcccccccEEEEEEEeeeC-CCCCc-eEEEEEEEeeeecC
Q 047296 185 DCVSVGHGISIGSLGKEVHEAGVQNVTVKYSWG-RPSTG-FSRNILFQHAVMKS 236 (331)
Q Consensus 185 D~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n~~~-~~~~g-~v~nI~~~ni~~~~ 236 (331)
- .-..+||+|.|+.- +.--| .-+|++|.|+++++
T Consensus 170 A------------------FWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g 205 (277)
T PF12541_consen 170 A------------------FWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEG 205 (277)
T ss_pred c------------------cccCCceEEEcceEeeeEEEEEcCCeEEEEeEEec
Confidence 1 23456666666110 00001 12566677766665
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.09 E-value=8.1e-05 Score=66.06 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=22.4
Q ss_pred EeEEEEeEEEEeecceEEEEecCCCCceeeEEEEeEEEE
Q 047296 264 SDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIKFEDVKLI 302 (331)
Q Consensus 264 ~nI~f~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~ 302 (331)
+|++|.|.++.+.+. .| .|+|++++|.++.
T Consensus 194 kNltliNC~I~g~Qp-----LC----Y~~~L~l~nC~~~ 223 (277)
T PF12541_consen 194 KNLTLINCTIEGTQP-----LC----YCDNLVLENCTMI 223 (277)
T ss_pred CCeEEEEeEEeccCc-----cE----eecceEEeCcEee
Confidence 789999998887652 12 3678888888876
No 23
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.99 E-value=0.00096 Score=64.93 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=67.9
Q ss_pred EEEEEeec----ceEEeceEEeCCCceE-EEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEE
Q 047296 114 ILGFSNSN----NILINGLTSQNSQMFH-VVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVS 188 (331)
Q Consensus 114 ~i~~~~~~----nv~I~~v~i~~s~~~~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~ 188 (331)
.+.+.+-+ +..|++.+...+-.|. =-+.-+++.+|+||-++. |.|+|.+.. .++.|+||.+-..+.+
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ng-- 416 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWKNENG-- 416 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS--
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cCchhheee-cCcceeeeEEEecCCC--
Confidence 45666444 4788899988766653 224445788999999998 677898876 6999999999764331
Q ss_pred eecceEecccCcccccccEEEEEEEe------------------------ee---CCC----CCceEEEEEEEeeeecCC
Q 047296 189 VGHGISIGSLGKEVHEAGVQNVTVKY------------------------SW---GRP----STGFSRNILFQHAVMKSV 237 (331)
Q Consensus 189 i~~Gi~iGs~g~~~~~~~v~nv~i~n------------------------~~---~~~----~~g~v~nI~~~ni~~~~~ 237 (331)
.=+.+|+. ...++||+|+| .| ... ..-.+|+++|+|+++++.
T Consensus 417 --piiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~ 489 (582)
T PF03718_consen 417 --PIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGM 489 (582)
T ss_dssp ---SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECC
T ss_pred --CeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecc
Confidence 11556654 35688888888 12 111 112689999999999987
Q ss_pred Cc-cEEEE
Q 047296 238 DN-PIVID 244 (331)
Q Consensus 238 ~~-~i~i~ 244 (331)
-. .++|.
T Consensus 490 ~~~l~ri~ 497 (582)
T PF03718_consen 490 CPCLFRIY 497 (582)
T ss_dssp E-ECEEE-
T ss_pred cceeEEEe
Confidence 54 56664
No 24
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.99 E-value=0.00029 Score=63.02 Aligned_cols=118 Identities=20% Similarity=0.308 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHhccCCCcEEEeCCCeEEEE-----EEEEecccccceEEE-ccceeEEEeeeeeEEEEc-e---eeeCC
Q 047296 19 STKAFLAAWAKACGSTAASTIYVPPGRYLLH-----NVVFQGQCRNNDITI-HAGNWILFEHVNGVYIYG-G---ILDGQ 88 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~-----~l~l~~~~~~~~itl-g~~~~i~~~~~~ni~I~G-G---~idg~ 88 (331)
--+-|++|++.| ..|.+|+|-+|+|.-. ||.++.. ++| |... .++...+.+.| + +|+|.
T Consensus 14 P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~~g-----Vtl~G~~~---~kG~~~il~~g~~~~~~I~g~ 82 (246)
T PF07602_consen 14 PFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIKPG-----VTLIGNES---NKGQIDILITGGGTGPTISGG 82 (246)
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEecCC-----eEEeeccc---CCCcceEEecCCceEEeEecc
Confidence 345699999765 5688999999999843 6888763 555 2100 00112344444 1 24444
Q ss_pred CCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCC---CceEEEEeceecEEEEEEEEEcCCCCCCCCeE
Q 047296 89 GAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNS---QMFHVVINGCHNVKVQGMRVSASGNSPNTDGI 165 (331)
Q Consensus 89 g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s---~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi 165 (331)
+.. .. -+ .+.+....+.+|+|+++.|+ ...++.+..+ +.+|+|++|... ..+||
T Consensus 83 ~~~-----------~~--~q-----n~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~----~~~GI 139 (246)
T PF07602_consen 83 GPD-----------LS--GQ-----NVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN----GREGI 139 (246)
T ss_pred Ccc-----------cc--ce-----eEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC----ccccE
Confidence 321 00 12 46666788999999999987 3446777777 889999998873 35677
Q ss_pred eccCc
Q 047296 166 HVQSS 170 (331)
Q Consensus 166 ~~~~s 170 (331)
.+...
T Consensus 140 ~v~g~ 144 (246)
T PF07602_consen 140 FVTGT 144 (246)
T ss_pred EEEee
Confidence 66543
No 25
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.94 E-value=0.00015 Score=65.17 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=22.6
Q ss_pred cEEEeeecCccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCe
Q 047296 2 VTYNVISLGAKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGR 45 (331)
Q Consensus 2 ~~~nv~d~Ga~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~ 45 (331)
+++|+.||-. .|=-++|.+|+.+ +.+|++|+|-
T Consensus 33 ~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl 65 (464)
T PRK10123 33 QSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGL 65 (464)
T ss_pred ceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCcc
Confidence 3567777743 3556778888854 4688888884
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.78 E-value=0.00036 Score=57.39 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=77.9
Q ss_pred EEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEeecce
Q 047296 114 ILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGI 193 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i~~Gi 193 (331)
.|.+....+++|+++++.+....++.+..+..++|++++|.. ...|+.+....+++|++|.+.... .|+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~------~~i 70 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNG------SGI 70 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-S------EEE
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEcc------ceE
Confidence 467778889999999999999999999999999999999997 455799988899999999998755 233
Q ss_pred EecccCcccccccEEEEEEEeeeCC-CCCc-eEEEEEEEeeeecCCC-ccEEEE
Q 047296 194 SIGSLGKEVHEAGVQNVTVKYSWGR-PSTG-FSRNILFQHAVMKSVD-NPIVID 244 (331)
Q Consensus 194 ~iGs~g~~~~~~~v~nv~i~n~~~~-~~~g-~v~nI~~~ni~~~~~~-~~i~i~ 244 (331)
.+-.. ....+++..|.+.... -.-. ...++++++.++.+.. .++.+.
T Consensus 71 ~~~~~----~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~ 120 (158)
T PF13229_consen 71 YVSGS----SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLE 120 (158)
T ss_dssp ECCS-----CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEE
T ss_pred EEEec----CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEE
Confidence 33211 2357888888773221 0011 2567888999988877 577775
No 27
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.48 E-value=0.003 Score=59.07 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=45.1
Q ss_pred EEEEEeecceEEeceEEe-------CCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCe
Q 047296 114 ILGFSNSNNILINGLTSQ-------NSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDC 186 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~-------~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ 186 (331)
.|.+..|++++|+++++. ....+++.+..|++++|+++++... ..+||.+..|++++|+++.+.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcce
Confidence 456666777777777664 1234567777777777777777652 22366666667777777776655555
Q ss_pred EEe
Q 047296 187 VSV 189 (331)
Q Consensus 187 i~i 189 (331)
|.+
T Consensus 155 I~i 157 (314)
T TIGR03805 155 IEI 157 (314)
T ss_pred EEE
Confidence 544
No 28
>PLN02480 Probable pectinesterase
Probab=97.39 E-value=0.0074 Score=56.78 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHhccCCCc----EEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCC
Q 047296 18 DSTKAFLAAWAKACGSTAAS----TIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQ 88 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~~g~----~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~ 88 (331)
.|=..||+||+++ . .+. +|+|.+|+|. ..|.++.. ..+|+|.| | +|+++
T Consensus 58 g~f~TIQ~AIdaa-p--~~~~~~~~I~Ik~GvY~-E~V~I~~~------------------kp~ItL~G~g~~~TvI~~~ 115 (343)
T PLN02480 58 GDFTSVQSAIDAV-P--VGNSEWIIVHLRKGVYR-EKVHIPEN------------------KPFIFMRGNGKGRTSIVWS 115 (343)
T ss_pred CCcccHHHHHhhC-c--cCCCceEEEEEcCcEEE-EEEEECCC------------------CceEEEEecCCCCeEEEcc
Confidence 5688999999754 2 233 4889999999 66777531 23344444 2 23333
Q ss_pred CCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc---------eEEEE-eceecEEEEEEEEEcCCC
Q 047296 89 GAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM---------FHVVI-NGCHNVKVQGMRVSASGN 158 (331)
Q Consensus 89 g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~---------~~i~~-~~~~nv~i~n~~i~~~~~ 158 (331)
... . .. .... .+ ...+++++++||+|+|+.. -++-+ ..++.+.++||++..-+|
T Consensus 116 ~~~------~--~~--~~sa-----Tv-tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QD 179 (343)
T PLN02480 116 QSS------S--DN--AASA-----TF-TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHN 179 (343)
T ss_pred ccc------c--CC--CCce-----EE-EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccc
Confidence 210 0 00 0111 34 3457899999999998721 23333 457788888888887544
Q ss_pred CCCCCeEeccCcccEEEEeeEEcc
Q 047296 159 SPNTDGIHVQSSSDVTILNARIGT 182 (331)
Q Consensus 159 ~~n~DGi~~~~s~nV~I~n~~i~~ 182 (331)
. +-.. .-+-..+||+|..
T Consensus 180 T-----Ly~~-~gR~yf~~C~IeG 197 (343)
T PLN02480 180 T-----LFDY-KGRHYYHSCYIQG 197 (343)
T ss_pred e-----eEeC-CCCEEEEeCEEEe
Confidence 2 2211 2346667777764
No 29
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.044 Score=50.63 Aligned_cols=135 Identities=16% Similarity=0.324 Sum_probs=89.1
Q ss_pred CCcEEEeC---CCeEEE-EEEEEecccccceEEE---ccceeEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCC
Q 047296 35 AASTIYVP---PGRYLL-HNVVFQGQCRNNDITI---HAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGA 107 (331)
Q Consensus 35 ~g~~v~iP---~G~y~~-~~l~l~~~~~~~~itl---g~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p 107 (331)
+|..+-|. +|.|.+ ++|+|++. ..-+| +.+..+... +.++.++|-+.-+.|....+ . ..
T Consensus 33 pgd~~~i~g~~~g~~vInr~l~l~ge---~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~------m----~a 98 (408)
T COG3420 33 PGDYYGISGRYAGNFVINRALTLRGE---NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPA------M----DA 98 (408)
T ss_pred CCcEEEEeeeecccEEEccceeeccc---cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCccc------c----cc
Confidence 45555555 333444 35666542 11222 256677665 77888888666665542110 0 01
Q ss_pred cccceeEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCC---CCCCCeEeccCcccEEEEeeEEccCC
Q 047296 108 KESWKIILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGN---SPNTDGIHVQSSSDVTILNARIGTGD 184 (331)
Q Consensus 108 ~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DGi~~~~s~nV~I~n~~i~~gD 184 (331)
- .+.-..+....|+.-.+... .+++.+..+.++.|++.+|....+ .....||.+..++.++|....+.-+.
T Consensus 99 g-----I~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~r 172 (408)
T COG3420 99 G-----IFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGR 172 (408)
T ss_pred e-----EEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccccc
Confidence 1 34445666677777766543 467889999999999999998654 23577999999999999999999999
Q ss_pred CeEEe
Q 047296 185 DCVSV 189 (331)
Q Consensus 185 D~i~i 189 (331)
|||-.
T Consensus 173 DgIy~ 177 (408)
T COG3420 173 DGIYS 177 (408)
T ss_pred ceEEE
Confidence 99877
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.19 E-value=0.0088 Score=53.35 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=48.0
Q ss_pred EEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe
Q 047296 114 ILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV 189 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i 189 (331)
.+.+..+.+++|++.++.+. ..++++..+++++|++..+.. +..||.+..+.+.+|+++.|.....+|.+
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l 106 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYL 106 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEE
Confidence 46677777777777777666 667777777777777777776 33677777666667777777665444433
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.14 E-value=0.015 Score=51.90 Aligned_cols=121 Identities=23% Similarity=0.293 Sum_probs=83.1
Q ss_pred CCcEEEeCCCeEEEE--EEEEecccccceEEEccceeEEEeeeeeEEEEceeeeCCCCceeecccCCCCCCCCCCcccce
Q 047296 35 AASTIYVPPGRYLLH--NVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWARKRSGNNNCPSGAKESWK 112 (331)
Q Consensus 35 ~g~~v~iP~G~y~~~--~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~p~~~~~ 112 (331)
.|.++++..|.|+.. ...++.. .+. ....-+.+....+++|++=++... ..
T Consensus 6 ~G~~i~~~~Gi~l~~~~~~~i~~n----~i~-~~~~gi~~~~s~~~~I~~n~i~~~------------------~~---- 58 (236)
T PF05048_consen 6 SGDTIFVSNGIYLWNSSNNSIENN----TIS-NSRDGIYVENSDNNTISNNTISNN------------------RY---- 58 (236)
T ss_pred CCCeEEEcCcEEEEeCCCCEEEcC----EEE-eCCCEEEEEEcCCeEEEeeEEECC------------------Ce----
Confidence 478888889998764 3444431 111 122224566677788887433222 12
Q ss_pred eEEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEe
Q 047296 113 IILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSV 189 (331)
Q Consensus 113 ~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i 189 (331)
.|++..+++.+|++.++.+.. .++.+..+.+.+|++.+|.. +..||.+..+.+.+|+++.|.....+|.+
T Consensus 59 -GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~~~~GI~l 128 (236)
T PF05048_consen 59 -GIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISN-----NGYGIYLYGSSNNTISNNTISNNGYGIYL 128 (236)
T ss_pred -EEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecC-----CCceEEEeeCCceEEECcEEeCCCEEEEE
Confidence 788888888899998888776 77888888877888888886 34488888888888888888755544444
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.13 E-value=0.0068 Score=58.35 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=61.1
Q ss_pred eeEEEeeeeeEEEEceeeeCCC-CceeecccCC----CCCCCCCCcccceeEEEEEeecceEEeceEEeCCCceEEEEec
Q 047296 68 NWILFEHVNGVYIYGGILDGQG-AGLWARKRSG----NNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMFHVVING 142 (331)
Q Consensus 68 ~~i~~~~~~ni~I~GG~idg~g-~~~~~~~~~~----~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~~i~~~~ 142 (331)
..|++.++++++|++=+|.+++ .--|-....+ ..-...... .|+++++.+++|++=++.....-++.+..
T Consensus 136 AgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~-----~I~lw~S~g~~V~~N~I~g~RD~gi~i~r 210 (455)
T TIGR03808 136 GLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVT-----AIVSFDALGLIVARNTIIGANDNGIEILR 210 (455)
T ss_pred CEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccc-----eEEEeccCCCEEECCEEEccCCCCeEEEE
Confidence 3477788999999996565553 3222111000 000000111 36666666666666666554442222211
Q ss_pred e----ecEEEEEEEEEc-----CCCCCCCCeEeccCcccEEEEeeEEccCC-CeEEe
Q 047296 143 C----HNVKVQGMRVSA-----SGNSPNTDGIHVQSSSDVTILNARIGTGD-DCVSV 189 (331)
Q Consensus 143 ~----~nv~i~n~~i~~-----~~~~~n~DGi~~~~s~nV~I~n~~i~~gD-D~i~i 189 (331)
. +...+.+.++.. .......+||++..+.+++|++++|+..+ |+|-+
T Consensus 211 ~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ 267 (455)
T TIGR03808 211 SAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRG 267 (455)
T ss_pred eeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEE
Confidence 1 112222222221 11134567888888888888888888888 88776
No 33
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.22 Score=45.57 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=41.2
Q ss_pred EEEEEeecceEEeceEEeCCC-----ceEEEE-eceecEEEEEEEEEcCCC---CCCCCe-Eecc-CcccEEEEeeEEcc
Q 047296 114 ILGFSNSNNILINGLTSQNSQ-----MFHVVI-NGCHNVKVQGMRVSASGN---SPNTDG-IHVQ-SSSDVTILNARIGT 182 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~-----~~~i~~-~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nV~I~n~~i~~ 182 (331)
.+.++.+.||.|++|+|...+ ...|.+ ...+|+.|+++++..... ....|| +++. ++..|+|.+|+|..
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd 197 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD 197 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec
Confidence 456666677777777776544 234555 566677777777765321 113444 3333 35667777777765
Q ss_pred CCC
Q 047296 183 GDD 185 (331)
Q Consensus 183 gDD 185 (331)
.|-
T Consensus 198 h~K 200 (345)
T COG3866 198 HDK 200 (345)
T ss_pred CCe
Confidence 543
No 34
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.06 E-value=0.0023 Score=52.52 Aligned_cols=134 Identities=22% Similarity=0.271 Sum_probs=74.6
Q ss_pred EEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEeecceEecccCcccccccEEEEEEEeee
Q 047296 137 HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKYSW 216 (331)
Q Consensus 137 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n~~ 216 (331)
++.+....+++|++++|... ..+||.+..+..++|+||.|..+.. |+.+... ....+++.+|++..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~------gi~~~~~----~~~~i~~~~~~~~~ 67 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGY------GIYVSGG----SNVTISNNTISDNG 67 (158)
T ss_dssp CEEETTCEC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTT------SEEEECC----ES-EEES-EEES-S
T ss_pred EEEEECCcCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCc------EEEEecC----CCeEEECeEEEEcc
Confidence 46778888999999999983 6779999998889999999998544 4444322 13467777777722
Q ss_pred CCCCCceEEEEEEEeeeecCCCc-cEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecceEEEEecCCCCceeeEE
Q 047296 217 GRPSTGFSRNILFQHAVMKSVDN-PIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTKVVVKIDCSQKYPCSGIK 295 (331)
Q Consensus 217 ~~~~~g~v~nI~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~~~~~i~~~~~~~~~ni~ 295 (331)
.+...-.-.++.+++.++.+... +|.+.. .-++++|++-++......++.+.... =.+++
T Consensus 68 ~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~----------------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~ 128 (158)
T PF13229_consen 68 SGIYVSGSSNITIENNRIENNGDYGIYISN----------------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVT 128 (158)
T ss_dssp EEEECCS-CS-EEES-EEECSSS-SCE-TC----------------EECS-EEES-EEECCTTSSCEEEECC-----S-E
T ss_pred ceEEEEecCCceecCcEEEcCCCccEEEec----------------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEE
Confidence 10001134567777777777665 666642 12345555555555443445554432 12566
Q ss_pred EEeEEEEe
Q 047296 296 FEDVKLIY 303 (331)
Q Consensus 296 ~~nv~i~~ 303 (331)
+++.++..
T Consensus 129 i~~n~i~~ 136 (158)
T PF13229_consen 129 IENNTISN 136 (158)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEe
Confidence 66666653
No 35
>smart00656 Amb_all Amb_all domain.
Probab=97.05 E-value=0.038 Score=47.78 Aligned_cols=70 Identities=24% Similarity=0.324 Sum_probs=48.2
Q ss_pred EEEEEeecceEEeceEEeCCCc------eEEEEeceecEEEEEEEEEcCCC----CCCCCeE-ecc-CcccEEEEeeEEc
Q 047296 114 ILGFSNSNNILINGLTSQNSQM------FHVVINGCHNVKVQGMRVSASGN----SPNTDGI-HVQ-SSSDVTILNARIG 181 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~~------~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi-~~~-~s~nV~I~n~~i~ 181 (331)
.|.+..++||.|++|++++... .++.+..+++|.|++|++..... ....||. ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 5677778899999999886533 46777888888888888886410 1124553 443 4688888888886
Q ss_pred cC
Q 047296 182 TG 183 (331)
Q Consensus 182 ~g 183 (331)
..
T Consensus 113 ~h 114 (190)
T smart00656 113 NH 114 (190)
T ss_pred cC
Confidence 43
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.02 E-value=0.085 Score=50.78 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEec-ccccceEEEc
Q 047296 19 STKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQG-QCRNNDITIH 65 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~-~~~~~~itlg 65 (331)
+.++||+||++| .+|.+|+|+.|+|.-..|.+++ +...++|||.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~ 47 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAKPITLR 47 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB-EEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCCCEEEE
Confidence 568999999876 5799999999999955677654 3345678883
No 37
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.97 E-value=0.00085 Score=45.82 Aligned_cols=42 Identities=29% Similarity=0.219 Sum_probs=24.2
Q ss_pred ccCCCCcchHHHHHHHHHHHhccCCCcEEEeCCCeEEEEEEEEec
Q 047296 11 AKSDGQTDSTKAFLAAWAKACGSTAASTIYVPPGRYLLHNVVFQG 55 (331)
Q Consensus 11 a~~dg~~ddt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~~~~l~l~~ 55 (331)
|+|||++|||.||.+|+++. +.|-.|---.=||++.+|-=.+
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lPd~s 42 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLPDIS 42 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS---GG
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCccHH
Confidence 78999999999999999642 4556666555579987764333
No 38
>PLN02773 pectinesterase
Probab=96.64 E-value=0.59 Score=43.65 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=40.8
Q ss_pred EEEEeecceEEeceEEeCCCce------EEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 115 LGFSNSNNILINGLTSQNSQMF------HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 115 i~~~~~~nv~I~~v~i~~s~~~------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-.+..++++..++|+|.|...- .+.+ ..+.+.+.+|+|.+.+|. +-... -+-.++||+|...
T Consensus 96 Tv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDT-----L~~~~-gr~yf~~c~IeG~ 163 (317)
T PLN02773 96 TVIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDT-----LYLHY-GKQYLRDCYIEGS 163 (317)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccce-----eEeCC-CCEEEEeeEEeec
Confidence 3444688999999999987321 2222 467888888888875442 32222 3578888888753
No 39
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.44 E-value=0.032 Score=48.66 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=46.8
Q ss_pred EeecceEEeceEEeCC---------------CceEEEEeceecEEEEEEEEEcCCC---CCCCCe-Eecc-CcccEEEEe
Q 047296 118 SNSNNILINGLTSQNS---------------QMFHVVINGCHNVKVQGMRVSASGN---SPNTDG-IHVQ-SSSDVTILN 177 (331)
Q Consensus 118 ~~~~nv~I~~v~i~~s---------------~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nV~I~n 177 (331)
..++||.|++++++.. ....+.+..+++|.|++|++..... ....|| +++. .+++|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4899999999999872 2335888899999999999987511 112555 6665 588999999
Q ss_pred eEEccCCC
Q 047296 178 ARIGTGDD 185 (331)
Q Consensus 178 ~~i~~gDD 185 (331)
|.|...+.
T Consensus 123 n~f~~~~k 130 (200)
T PF00544_consen 123 NIFDNHNK 130 (200)
T ss_dssp -EEEEEEE
T ss_pred hhcccccc
Confidence 99976443
No 40
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.057 Score=49.24 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=78.0
Q ss_pred EEEEEeecceEEeceEEe-CCCceEEEEeceecEEEEEEEEEcCCC-CCCCCeEec-cCcccEEEEeeEEccCCCeEEe-
Q 047296 114 ILGFSNSNNILINGLTSQ-NSQMFHVVINGCHNVKVQGMRVSASGN-SPNTDGIHV-QSSSDVTILNARIGTGDDCVSV- 189 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~-~s~~~~i~~~~~~nv~i~n~~i~~~~~-~~n~DGi~~-~~s~nV~I~n~~i~~gDD~i~i- 189 (331)
.+.+.-|.|.+|.|+--. .--.|++.+...+||.|+|++|..... -++-|+|.+ ..++|++|++|++..+--...-
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 378888999999887632 233688999999999999999998532 234699999 6799999999999863211101
Q ss_pred -ecc-eEecccCcccccccEEEEEEEeeeC-----CC----CCceEEEEEEEeeeecCC
Q 047296 190 -GHG-ISIGSLGKEVHEAGVQNVTVKYSWG-----RP----STGFSRNILFQHAVMKSV 237 (331)
Q Consensus 190 -~~G-i~iGs~g~~~~~~~v~nv~i~n~~~-----~~----~~g~v~nI~~~ni~~~~~ 237 (331)
+.| +.|+--. .--+|++-+|++.+. .. ....-.+|+|.+..+++.
T Consensus 174 h~DGl~Dik~~A---nyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 174 HGDGLVDIKKDA---NYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCCccEEeccCC---cEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 112 3443221 123567777777111 00 112345677777777765
No 41
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.19 E-value=0.18 Score=48.66 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=26.0
Q ss_pred cCCCCcchHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEe
Q 047296 12 KSDGQTDSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQ 54 (331)
Q Consensus 12 ~~dg~~ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~ 54 (331)
.+||. -|=.-||+||+++.... ..-+|+|.+|+|. ..|.++
T Consensus 87 a~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip 129 (422)
T PRK10531 87 AGTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVP 129 (422)
T ss_pred CCCCC-CCccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeC
Confidence 34553 24678999997543221 1357899999998 345553
No 42
>PLN02665 pectinesterase family protein
Probab=96.01 E-value=0.32 Score=46.29 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCCc
Q 047296 19 STKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGAG 91 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~~ 91 (331)
|-..||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..+|++.| | +|..++..
T Consensus 79 df~TIq~AIdai-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~------------------kp~Itl~G~~~~~tiIt~~~~a 138 (366)
T PLN02665 79 DFKTITDAIKSI-PAGNTQRVIIDIGPGEYN-EKITIDRS------------------KPFVTLYGSPGAMPTLTFDGTA 138 (366)
T ss_pred CccCHHHHHhhC-cccCCceEEEEEeCcEEE-EEEEecCC------------------CCEEEEEecCCCCCEEEECCcc
Confidence 577899999753 321 1247889999999 44555431 23444444 2 12212110
Q ss_pred eeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc---------eEEEE-eceecEEEEEEEEEcCCCCCC
Q 047296 92 LWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM---------FHVVI-NGCHNVKVQGMRVSASGNSPN 161 (331)
Q Consensus 92 ~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~n 161 (331)
...| ..+ . .-....++++..+||+|+|+.. -.+-+ ...+...+.||++.+.+|.
T Consensus 139 ----~~~g----T~~-S-----aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDT-- 202 (366)
T PLN02665 139 ----AKYG----TVY-S-----ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDT-- 202 (366)
T ss_pred ----CCCC----Ccc-e-----EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccce--
Confidence 0000 001 1 3344568999999999998631 12222 2457788888888875442
Q ss_pred CCeEeccCcccEEEEeeEEccC
Q 047296 162 TDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 162 ~DGi~~~~s~nV~I~n~~i~~g 183 (331)
+-... -+-..+||+|...
T Consensus 203 ---L~~~~-gr~yf~~CyIeG~ 220 (366)
T PLN02665 203 ---LCDDK-GRHFFKDCYIEGT 220 (366)
T ss_pred ---eEeCC-CCEEEEeeEEeec
Confidence 22222 3466777777753
No 43
>PLN02432 putative pectinesterase
Probab=95.92 E-value=0.43 Score=44.02 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCCc
Q 047296 19 STKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGAG 91 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~~ 91 (331)
|=.-||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..+|+|.| | +|..+.
T Consensus 22 ~f~TIq~Aida~-p~~~~~~~~I~I~~G~Y~-E~V~ip~~------------------k~~itl~G~~~~~TvI~~~~-- 79 (293)
T PLN02432 22 DFRKIQDAIDAV-PSNNSQLVFIWVKPGIYR-EKVVVPAD------------------KPFITLSGTQASNTIITWND-- 79 (293)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCceeE-EEEEEecc------------------CceEEEEEcCCCCeEEEecC--
Confidence 577899999754 322 2347899999996 34555321 23444444 2 121110
Q ss_pred eeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc-----eEEEEeceecEEEEEEEEEcCCCCCCCCeEe
Q 047296 92 LWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM-----FHVVINGCHNVKVQGMRVSASGNSPNTDGIH 166 (331)
Q Consensus 92 ~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~-----~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~ 166 (331)
... . ...+ .+ ...++++..+||+|+|... -.+. ...+...+.+|.|.+.+|. +-
T Consensus 80 ----~~~--~--~~sa------T~-~v~a~~f~a~nlt~~Nt~g~~~QAvAl~-v~gDr~~f~~c~~~G~QDT-----Ly 138 (293)
T PLN02432 80 ----GGD--I--FESP------TL-SVLASDFVGRFLTIQNTFGSSGKAVALR-VAGDRAAFYGCRILSYQDT-----LL 138 (293)
T ss_pred ----Ccc--c--ccce------EE-EEECCCeEEEeeEEEeCCCCCCceEEEE-EcCCcEEEEcceEecccce-----eE
Confidence 000 0 0111 23 4467889999999988632 1222 2457788888888875442 22
Q ss_pred ccCcccEEEEeeEEccC
Q 047296 167 VQSSSDVTILNARIGTG 183 (331)
Q Consensus 167 ~~~s~nV~I~n~~i~~g 183 (331)
... -.-..+||+|...
T Consensus 139 ~~~-gr~yf~~c~I~G~ 154 (293)
T PLN02432 139 DDT-GRHYYRNCYIEGA 154 (293)
T ss_pred ECC-CCEEEEeCEEEec
Confidence 222 3567778887743
No 44
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.89 E-value=0.37 Score=41.93 Aligned_cols=44 Identities=32% Similarity=0.638 Sum_probs=24.1
Q ss_pred EEEEEEEEEcCCCCC--CCCeEeccCcccEEEEeeEEcc-CCCeEEe
Q 047296 146 VKVQGMRVSASGNSP--NTDGIHVQSSSDVTILNARIGT-GDDCVSV 189 (331)
Q Consensus 146 v~i~n~~i~~~~~~~--n~DGi~~~~s~nV~I~n~~i~~-gDD~i~i 189 (331)
+.|+|++|....... ...|+++..+++++|+||.+.. +.+++.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 446666666643322 1356666666777777776664 3444444
No 45
>PLN02682 pectinesterase family protein
Probab=95.79 E-value=0.54 Score=44.72 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=41.5
Q ss_pred EEEEeecceEEeceEEeCCCce---------EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 115 LGFSNSNNILINGLTSQNSQMF---------HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 115 i~~~~~~nv~I~~v~i~~s~~~---------~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-....++++..+||+|.|+... .+-+ ...+...+.+|+|.+.+|. +-.. .-+-..+||+|...
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~ 229 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDT-----LYDH-LGRHYFKDCYIEGS 229 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccc-----eEEC-CCCEEEEeeEEccc
Confidence 3455688999999999986421 2222 3478889999999985542 2222 23567888888754
No 46
>PLN02176 putative pectinesterase
Probab=95.74 E-value=0.48 Score=44.59 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=69.0
Q ss_pred CCCCcchHHHHHHHHHHHhccCC--CcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e---eee
Q 047296 13 SDGQTDSTKAFLAAWAKACGSTA--ASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G---ILD 86 (331)
Q Consensus 13 ~dg~~ddt~Aiq~Ai~~ac~~~~--g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G---~id 86 (331)
.||. -|-..||+||+++ .... .-+|+|++|+|. ..|.++.+ ..+|+|.| | ++-
T Consensus 45 ~dGs-Gdf~TIq~AIdav-P~~~~~~~~I~Ik~GvY~-EkV~Ip~~------------------k~~vtl~G~g~~~TiI 103 (340)
T PLN02176 45 PNDA-RYFKTVQSAIDSI-PLQNQNWIRILIQNGIYR-EKVTIPKE------------------KGYIYMQGKGIEKTII 103 (340)
T ss_pred CCCC-CCccCHHHHHhhc-hhcCCceEEEEECCcEEE-EEEEECCC------------------CccEEEEEcCCCceEE
Confidence 3443 3577899999753 3211 237899999999 44555431 23455555 2 110
Q ss_pred CCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----------eEEE-EeceecEEEEEEEEEc
Q 047296 87 GQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----------FHVV-INGCHNVKVQGMRVSA 155 (331)
Q Consensus 87 g~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----------~~i~-~~~~~nv~i~n~~i~~ 155 (331)
. |+.... . .... .+.. .++++..+||++.|... -.+- ....+...+.+|++..
T Consensus 104 ----t-~~~~~~--t---~~sa-----T~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G 167 (340)
T PLN02176 104 ----A-YGDHQA--T---DTSA-----TFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDG 167 (340)
T ss_pred ----E-EeCCcc--c---ccce-----EEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEec
Confidence 0 111100 0 0111 3333 57888889998887631 1222 2245778888888887
Q ss_pred CCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 156 SGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 156 ~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-+|. +-.. .-+-..++|+|...
T Consensus 168 ~QDT-----Ly~~-~gRqyf~~CyIeG~ 189 (340)
T PLN02176 168 FQDT-----LFDG-KGRHYYKRCVISGG 189 (340)
T ss_pred ccce-----eEeC-CcCEEEEecEEEec
Confidence 5442 2222 23466677777643
No 47
>PLN02634 probable pectinesterase
Probab=95.49 E-value=0.8 Score=43.40 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=39.0
Q ss_pred EEeecceEEeceEEeCCCc---------eEEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 117 FSNSNNILINGLTSQNSQM---------FHVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 117 ~~~~~nv~I~~v~i~~s~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
...++++..+||+|.|+.. -.+-+ ...+...+.+|.|..-+|. +-.. .-+-..+||+|...
T Consensus 145 ~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDT-----L~~~-~gR~yf~~CyIeG~ 215 (359)
T PLN02634 145 TVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDT-----LCDD-AGRHYFKECYIEGS 215 (359)
T ss_pred EEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccce-----eeeC-CCCEEEEeeEEccc
Confidence 3457889999999988631 11222 2467789999999985542 2222 23577788888753
No 48
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.41 E-value=0.09 Score=48.76 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHhccCC--CcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEceeeeCCCCceeec
Q 047296 18 DSTKAFLAAWAKACGSTA--ASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWAR 95 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~~--g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~GG~idg~g~~~~~~ 95 (331)
-|=..||+||+++ .... .-+|+|.+|+|. ..|.++.. ..+|+| ..++.....|.+ +.. +
T Consensus 10 gdf~TIq~Aida~-p~~~~~~~~I~I~~G~Y~-E~V~i~~~--k~~v~l------~G~~~~~tiI~~-----~~~-~--- 70 (298)
T PF01095_consen 10 GDFTTIQAAIDAA-PDNNTSRYTIFIKPGTYR-EKVTIPRS--KPNVTL------IGEGRDKTIITG-----NDN-A--- 70 (298)
T ss_dssp SSBSSHHHHHHHS--SSSSS-EEEEE-SEEEE---EEE-ST--STTEEE------EES-TTTEEEEE---------T---
T ss_pred CCccCHHHHHHhc-hhcCCceEEEEEeCeeEc-cccEeccc--cceEEE------EecCCCceEEEE-----ecc-c---
Confidence 4567799999754 3221 348999999999 44555531 013333 111112222332 100 0
Q ss_pred ccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce------EEEEeceecEEEEEEEEEcCCCCCCCCeEeccC
Q 047296 96 KRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF------HVVINGCHNVKVQGMRVSASGNSPNTDGIHVQS 169 (331)
Q Consensus 96 ~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~ 169 (331)
..+ .. ..+.. .+ ....+++.+++|+|.|+... .+.+ ..+...+.+|.|.+.+| -+-...
T Consensus 71 -~~~-~~-t~~sa-----T~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QD-----TL~~~~ 135 (298)
T PF01095_consen 71 -ADG-GG-TFRSA-----TF-SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQD-----TLYANG 135 (298)
T ss_dssp -TTB--H-CGGC------SE-EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT------EEE-S
T ss_pred -ccc-cc-ccccc-----cc-cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccc-----eeeecc
Confidence 000 00 00111 23 34589999999999885321 2333 45778999999988544 343333
Q ss_pred cccEEEEeeEEccCCC
Q 047296 170 SSDVTILNARIGTGDD 185 (331)
Q Consensus 170 s~nV~I~n~~i~~gDD 185 (331)
.+..++||+|...-|
T Consensus 136 -~r~y~~~c~IeG~vD 150 (298)
T PF01095_consen 136 -GRQYFKNCYIEGNVD 150 (298)
T ss_dssp -SEEEEES-EEEESEE
T ss_pred -ceeEEEeeEEEecCc
Confidence 457888888885444
No 49
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=95.31 E-value=0.72 Score=46.54 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=41.8
Q ss_pred EEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 116 GFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.....+++..++++|.|.... .+-+ ...+...+.+|.|.+-+| -+.... ..-..++|+|...
T Consensus 335 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~~-~Rqyy~~C~I~Gt 401 (566)
T PLN02713 335 FAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-----TLYTHS-LRQFYRECDIYGT 401 (566)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-----ceEECC-CCEEEEeeEEecc
Confidence 334579999999999986421 2222 356788999999998544 233333 3568888888753
No 50
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.12 E-value=0.8 Score=45.96 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=74.3
Q ss_pred CCCcchHHHHHHHHHHHhccCC-----CcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc--eeee
Q 047296 14 DGQTDSTKAFLAAWAKACGSTA-----ASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG--GILD 86 (331)
Q Consensus 14 dg~~ddt~Aiq~Ai~~ac~~~~-----g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G--G~id 86 (331)
||. -+=.-||+||+++ .... .-+|+|.+|+|. ..|.++.. -.+|+| ..++.....|+| -..|
T Consensus 230 dGs-G~f~TI~~Av~a~-p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~--k~~i~l------~G~g~~~tiIt~~~~~~d 298 (538)
T PLN03043 230 YGT-DNFTTITDAIAAA-PNNSKPEDGYFVIYAREGYYE-EYVVVPKN--KKNIML------IGDGINKTIITGNHSVVD 298 (538)
T ss_pred CCC-CCCcCHHHHHHhc-cccCCCCcceEEEEEcCeeeE-EEEEeCCC--CCcEEE------EecCCCCeEEEeCCccCC
Confidence 443 3567899999753 3221 238999999998 34555331 002322 111222333333 1112
Q ss_pred CCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCC
Q 047296 87 GQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPN 161 (331)
Q Consensus 87 g~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n 161 (331)
| |. ..+ . .-.....+++..++++|+|.... .+-+ ..++...+.+|.|..-+|.
T Consensus 299 g-----~~---------T~~-s-----aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDT-- 356 (538)
T PLN03043 299 G-----WT---------TFN-S-----STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDT-- 356 (538)
T ss_pred C-----Cc---------ccc-c-----eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcc--
Confidence 1 10 001 1 33444679999999999986432 2333 3567899999999986542
Q ss_pred CCeEeccCcccEEEEeeEEccC
Q 047296 162 TDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 162 ~DGi~~~~s~nV~I~n~~i~~g 183 (331)
+.... .+-..+||+|...
T Consensus 357 ---Ly~~~-~rq~y~~c~I~Gt 374 (538)
T PLN03043 357 ---LYVHS-LRQFYRECDIYGT 374 (538)
T ss_pred ---cccCC-CcEEEEeeEEeec
Confidence 32222 3467888888754
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.11 E-value=0.89 Score=45.36 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEceeeeCCCCceeec
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWAR 95 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~GG~idg~g~~~~~~ 95 (331)
-+-..||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..+|+| ..++.....|++ +..
T Consensus 228 G~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~--k~~itl------~G~g~~~TiIt~-----~~~----- 287 (530)
T PLN02933 228 GNFTTINEAVSAA-PNSSETRFIIYIKGGEYF-ENVELPKK--KTMIMF------IGDGIGKTVIKA-----NRS----- 287 (530)
T ss_pred CCccCHHHHHHhc-hhcCCCcEEEEEcCceEE-EEEEecCC--CceEEE------EEcCCCCcEEEe-----CCc-----
Confidence 3567899999754 321 2348999999999 55666532 012322 111112222332 110
Q ss_pred ccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCc
Q 047296 96 KRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSS 170 (331)
Q Consensus 96 ~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s 170 (331)
...| .. ..+. .-.....+++..+|++|.|.... .+-+ ...+...+.+|.|..-+|. +-...
T Consensus 288 ~~dg-~~-T~~S------aT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT-----Ly~~~- 353 (530)
T PLN02933 288 RIDG-WS-TFQT------ATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDT-----LYVHS- 353 (530)
T ss_pred cCCC-Cc-cccc------eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccc-----cccCC-
Confidence 0000 00 0011 33445688999999999986432 2333 3578899999999986542 32222
Q ss_pred ccEEEEeeEEccC
Q 047296 171 SDVTILNARIGTG 183 (331)
Q Consensus 171 ~nV~I~n~~i~~g 183 (331)
..-..++|+|...
T Consensus 354 ~Rqyy~~C~IeGt 366 (530)
T PLN02933 354 AKQFYRECDIYGT 366 (530)
T ss_pred CceEEEeeEEecc
Confidence 3468888888753
No 52
>PLN02304 probable pectinesterase
Probab=95.11 E-value=1.3 Score=42.34 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHhcc--CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCC
Q 047296 18 DSTKAFLAAWAKACGS--TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGA 90 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~--~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~ 90 (331)
-|=.-||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..+|+|.| | +|-
T Consensus 85 Gdf~TIQ~AIdav-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~------------------K~~Itl~G~g~~~TiIt---- 140 (379)
T PLN02304 85 CNFTTVQSAVDAV-GNFSQKRNVIWINSGIYY-EKVTVPKT------------------KPNITFQGQGFDSTAIA---- 140 (379)
T ss_pred CCccCHHHHHhhC-cccCCCcEEEEEeCeEeE-EEEEECCC------------------CCcEEEEecCCCCcEEE----
Confidence 3467899999753 32 12347899999998 44555431 23455555 2 111
Q ss_pred ceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc---------eEEEE-eceecEEEEEEEEEcCCCCC
Q 047296 91 GLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM---------FHVVI-NGCHNVKVQGMRVSASGNSP 160 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~ 160 (331)
|+..... ..... .. .-.....+++..+||+|.|+.. -.+-+ ...+...+.+|.|...+|.
T Consensus 141 --~~~~a~~-~~gT~-~S-----aTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDT- 210 (379)
T PLN02304 141 --WNDTAKS-ANGTF-YS-----ASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDT- 210 (379)
T ss_pred --ccCcccC-CCCcc-ce-----EEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccce-
Confidence 1111000 00000 11 2333457899999999998641 12222 3478889999999986542
Q ss_pred CCCeEeccCcccEEEEeeEEccC
Q 047296 161 NTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 161 n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
+-.. .-.-.++||+|...
T Consensus 211 ----Ly~~-~gR~Yf~~CyIeG~ 228 (379)
T PLN02304 211 ----LHDD-RGRHYFKDCYIQGS 228 (379)
T ss_pred ----eEeC-CCCEEEEeeEEccc
Confidence 2222 23577888888754
No 53
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.07 E-value=0.58 Score=46.91 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCC
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGA 90 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~ 90 (331)
-|=.-||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..||+|.| | +|-++..
T Consensus 240 G~f~TIq~Ai~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~~------------------k~~i~l~G~g~~~TiIt~~~~ 299 (541)
T PLN02416 240 GNFSTITDAINFA-PNNSNDRIIIYVREGVYE-ENVEIPIY------------------KTNIVLIGDGSDVTFITGNRS 299 (541)
T ss_pred CCccCHHHHHHhh-hhcCCceEEEEEeCceeE-EEEecCCC------------------CccEEEEecCCCceEEeCCCc
Confidence 3567899999754 321 2347899999998 34555321 23444444 3 1222211
Q ss_pred ceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeE
Q 047296 91 GLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGI 165 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi 165 (331)
. ..| .. ..+.. .+. ...+++..+|++|.|.... .+-+ ..++...+.+|.|.+-+|. +
T Consensus 300 ~-----~~g-~~-T~~sa-----T~~-v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT-----L 361 (541)
T PLN02416 300 V-----VDG-WT-TFRSA-----TLA-VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDT-----L 361 (541)
T ss_pred c-----CCC-CC-ccceE-----EEE-EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccch-----h
Confidence 0 000 00 00111 343 4589999999999986432 2222 2468899999999986552 2
Q ss_pred eccCcccEEEEeeEEccC
Q 047296 166 HVQSSSDVTILNARIGTG 183 (331)
Q Consensus 166 ~~~~s~nV~I~n~~i~~g 183 (331)
... +.+-..++|+|...
T Consensus 362 y~~-~~Rqyy~~C~I~Gt 378 (541)
T PLN02416 362 YVH-SFRQFYRECDIYGT 378 (541)
T ss_pred ccC-CCceEEEeeEEeec
Confidence 222 24568888888753
No 54
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.01 E-value=0.83 Score=46.00 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHhcc---CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCC
Q 047296 18 DSTKAFLAAWAKACGS---TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQG 89 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~---~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g 89 (331)
-+=.-||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..||+|.| | +|-++-
T Consensus 251 g~f~TIq~Av~a~-p~~~~~~r~vI~vk~GvY~-E~V~i~~~------------------k~~v~l~G~g~~~TiIt~~~ 310 (553)
T PLN02708 251 CCYKTVQEAVNAA-PDNNGDRKFVIRIKEGVYE-ETVRVPLE------------------KKNVVFLGDGMGKTVITGSL 310 (553)
T ss_pred CCccCHHHHHHhh-hhccCCccEEEEEeCceEE-eeeeecCC------------------CccEEEEecCCCceEEEecC
Confidence 3467899999754 32 12348999999999 34554321 33444544 2 122111
Q ss_pred CceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCe
Q 047296 90 AGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDG 164 (331)
Q Consensus 90 ~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DG 164 (331)
.. ...| .. ..+ . .-.....+++..+|++|.|...- .+-+ ..++.+.+.+|.|.+-+|.
T Consensus 311 ~~----~~~g-~~-T~~-s-----aT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDT----- 373 (553)
T PLN02708 311 NV----GQPG-IS-TYN-T-----ATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDT----- 373 (553)
T ss_pred cc----CCCC-cC-ccc-e-----EEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccc-----
Confidence 10 0000 00 001 1 23344688999999999986532 2333 3578899999999986542
Q ss_pred EeccCcccEEEEeeEEccC
Q 047296 165 IHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 165 i~~~~s~nV~I~n~~i~~g 183 (331)
+-... .+-..++|+|...
T Consensus 374 Ly~~~-~rq~y~~C~I~Gt 391 (553)
T PLN02708 374 LYAHS-LRQFYKSCRIQGN 391 (553)
T ss_pred ceeCC-CceEEEeeEEeec
Confidence 33332 3567788888754
No 55
>smart00656 Amb_all Amb_all domain.
Probab=94.95 E-value=0.063 Score=46.41 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=40.4
Q ss_pred eEEEEeceecEEEEEEEEEcCCC--CCCCCeEeccCcccEEEEeeEEccC
Q 047296 136 FHVVINGCHNVKVQGMRVSASGN--SPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 136 ~~i~~~~~~nv~i~n~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.++.+..++||.|+|++|..... ..+.|+|.+.++++|+|+.|.+..+
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~ 81 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGC 81 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcc
Confidence 45667778899999999998643 2368999999999999999999876
No 56
>PLN02497 probable pectinesterase
Probab=94.93 E-value=1 Score=42.27 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCCCcchHHHHHHHHHHHhccCC--CcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----ee
Q 047296 13 SDGQTDSTKAFLAAWAKACGSTA--ASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----IL 85 (331)
Q Consensus 13 ~dg~~ddt~Aiq~Ai~~ac~~~~--g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~i 85 (331)
.||. -|-..||+||+++ .... .-+|+|-+|+|. ..|.++.. ..+|+|.| | +|
T Consensus 38 ~dGs-Gdf~TIq~AIdav-P~~~~~~~~I~Ik~G~Y~-EkV~Ip~~------------------k~~itl~G~g~~~tiI 96 (331)
T PLN02497 38 QSGH-GNFTTIQSAIDSV-PSNNKHWFCINVKAGLYR-EKVKIPYD------------------KPFIVLVGAGKRRTRI 96 (331)
T ss_pred CCCC-CCccCHHHHHhhc-cccCCceEEEEEeCcEEE-EEEEecCC------------------CCcEEEEecCCCCceE
Confidence 3543 4577899999754 3222 236999999997 33445321 23444444 2 11
Q ss_pred eCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce-----------EEEE-eceecEEEEEEEE
Q 047296 86 DGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF-----------HVVI-NGCHNVKVQGMRV 153 (331)
Q Consensus 86 dg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~-----------~i~~-~~~~nv~i~n~~i 153 (331)
. |+.... . ... .-....++++..+||++.|+..+ .+-+ ...+...+.+|.+
T Consensus 97 t------~~~~~~--t--~~S-------aT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f 159 (331)
T PLN02497 97 E------WDDHDS--T--AQS-------PTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGF 159 (331)
T ss_pred E------Eecccc--c--cCc-------eEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEE
Confidence 1 110000 0 011 22334678899999999886421 2222 2467788888888
Q ss_pred EcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 154 SASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 154 ~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.+.+|. +-.. .-+-..+||+|...
T Consensus 160 ~G~QDT-----Ly~~-~gRqyf~~C~IeG~ 183 (331)
T PLN02497 160 AGVQDT-----LWDS-DGRHYFKRCTIQGA 183 (331)
T ss_pred eccccc-----eeeC-CCcEEEEeCEEEec
Confidence 875542 2211 23467777777643
No 57
>PLN02671 pectinesterase
Probab=94.92 E-value=1 Score=42.64 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=38.4
Q ss_pred EEEeecceEEeceEEeCCCc----------eEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 116 GFSNSNNILINGLTSQNSQM----------FHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~----------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
....++++..+||+|.|... -++.+ ..+.+.+.+|+|...+|. +-.. .-+-.++||+|...
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~CyIeG~ 219 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQDT-----LLDE-TGSHYFYQCYIQGS 219 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEeccccc-----cEeC-CCcEEEEecEEEEe
Confidence 44567888889999988721 12333 467888888888875542 2111 23467778887743
No 58
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.78 E-value=1.7 Score=43.27 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=74.3
Q ss_pred CCCCcchHHHHHHHHHHHhc--cCCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----ee
Q 047296 13 SDGQTDSTKAFLAAWAKACG--STAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----IL 85 (331)
Q Consensus 13 ~dg~~ddt~Aiq~Ai~~ac~--~~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~i 85 (331)
.||. -|-.-||+||+++.. ....-+|+|.+|+|. ..|.++.. ..||+|.| | +|
T Consensus 231 ~dGs-G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~------------------k~nItl~G~g~~~TiI 290 (529)
T PLN02170 231 ADGS-GTHKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTK------------------QKNVMLVGDGKGKTVI 290 (529)
T ss_pred CCCC-CchhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCC------------------CceEEEEEcCCCCeEE
Confidence 3443 357789999975311 112358999999998 44555431 23344444 2 12
Q ss_pred eCCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCC
Q 047296 86 DGQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSP 160 (331)
Q Consensus 86 dg~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~ 160 (331)
-++.. ...+ .. ..+ . .-.....+++..+|++|.|.... .+-+ ...+...+.+|.|..-+|.
T Consensus 291 t~~~~-----~~~g-~~-T~~-S-----aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDT- 356 (529)
T PLN02170 291 VGSRS-----NRGG-WT-TYQ-T-----ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDS- 356 (529)
T ss_pred EeCCc-----CCCC-Cc-ccc-c-----eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCc-
Confidence 11110 0000 00 001 1 34455689999999999987431 2222 3568899999999986542
Q ss_pred CCCeEeccCcccEEEEeeEEccC
Q 047296 161 NTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 161 n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
+-... .+-..++|+|...
T Consensus 357 ----Ly~~~-~Rqyy~~C~I~Gt 374 (529)
T PLN02170 357 ----LYTHS-KRQFYRETDITGT 374 (529)
T ss_pred ----ceeCC-CCEEEEeeEEccc
Confidence 32222 3457788888754
No 59
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.73 E-value=1.3 Score=44.50 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCC
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGA 90 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~ 90 (331)
-|-..||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..||++.| | +|-++..
T Consensus 246 G~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~-E~V~i~~~------------------k~~i~l~G~g~~~TiIt~~~~ 305 (548)
T PLN02301 246 GKYKTVKEAVASA-PDNSKTRYVIYVKKGTYK-ENVEIGKK------------------KKNLMLVGDGMDSTIITGSLN 305 (548)
T ss_pred CCcccHHHHHHhh-hhcCCceEEEEEeCceee-EEEEecCC------------------CceEEEEecCCCCcEEEeCCc
Confidence 3577899999754 321 1248999999998 34555431 23344444 2 1111100
Q ss_pred ceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeE
Q 047296 91 GLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGI 165 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi 165 (331)
...| .. ..+ . .-.....+++..+|++|+|.... .+-+ ..++...+.+|.|.+-+|. +
T Consensus 306 -----~~dg-~~-T~~-S-----aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----L 367 (548)
T PLN02301 306 -----VIDG-ST-TFR-S-----ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDT-----L 367 (548)
T ss_pred -----cCCC-CC-cee-e-----EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccc-----c
Confidence 0000 00 001 1 33444679999999999986432 2322 3568899999999986542 3
Q ss_pred eccCcccEEEEeeEEccC
Q 047296 166 HVQSSSDVTILNARIGTG 183 (331)
Q Consensus 166 ~~~~s~nV~I~n~~i~~g 183 (331)
-... .+-..+||+|...
T Consensus 368 y~~~-~Rqyy~~C~I~Gt 384 (548)
T PLN02301 368 YAHS-LRQFYRDSYITGT 384 (548)
T ss_pred eecC-CcEEEEeeEEEec
Confidence 2222 3468888888754
No 60
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.70 E-value=1.4 Score=44.29 Aligned_cols=63 Identities=8% Similarity=-0.015 Sum_probs=41.4
Q ss_pred EEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 115 LGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 115 i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-.....+++..+|++|.|.... .+-+ ...+.+.+.+|.|.+-+|. +-... .+-..++|+|...
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDT-----Ly~~~-~rqyy~~C~I~Gt 380 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDT-----LYAHS-LRQFYRECEIYGT 380 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccccc-----ceecC-CceEEEeeEEecc
Confidence 3445789999999999987422 2222 3478889999999885542 22222 3457788888743
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=94.57 E-value=0.99 Score=45.30 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=41.4
Q ss_pred EEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 116 GFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.....+++..+|++|.|.... .+-+ ...+...+.+|.|..-+|. +-... .+-..++|+|...
T Consensus 307 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDT-----Ly~~~-~Rqyy~~C~I~Gt 373 (539)
T PLN02995 307 AGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDT-----LMVHS-QRQFYRECYIYGT 373 (539)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccch-----hccCC-CceEEEeeEEeec
Confidence 334688999999999986432 2333 3568889999999986552 22222 3457888888753
No 62
>PLN02197 pectinesterase
Probab=94.51 E-value=1.4 Score=44.63 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=41.8
Q ss_pred EEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 116 GFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.....+++..++++|.|... -.+-+ ..++...+.+|.|..-+|. +.... .+-..++|+|...
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT-----Ly~~~-~Rqyy~~C~I~Gt 425 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT-----LYVNN-GRQFYRNIVVSGT 425 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc-----eEecC-CCEEEEeeEEEec
Confidence 34468999999999998643 22333 2578899999999985542 33332 3467888888753
No 63
>PLN02916 pectinesterase family protein
Probab=94.43 E-value=1.7 Score=43.09 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHhcc-----CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeC
Q 047296 18 DSTKAFLAAWAKACGS-----TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDG 87 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~-----~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg 87 (331)
-|-.-||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..||++.| | +|-+
T Consensus 197 G~f~TIq~AI~a~-P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~------------------k~~i~l~G~g~~~TiIt~ 256 (502)
T PLN02916 197 GTHRTINQALAAL-SRMGKSRTNRVIIYVKAGVYN-EKVEIDRH------------------MKNVMFVGDGMDKTIITN 256 (502)
T ss_pred CCccCHHHHHHhc-ccccCCCCceEEEEEeCceee-EEEEecCC------------------CceEEEEecCCCCcEEEe
Confidence 3466899999754 32 12348999999999 44555431 23444444 2 1211
Q ss_pred CCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCC
Q 047296 88 QGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNT 162 (331)
Q Consensus 88 ~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~ 162 (331)
+.. ...| .. ..+ . .-.....+++..+|++|.|.... .+-+ ..++...+.+|.|..-+|
T Consensus 257 ~~~-----~~~g-~~-T~~-S-----AT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD---- 319 (502)
T PLN02916 257 NRN-----VPDG-ST-TYS-S-----ATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD---- 319 (502)
T ss_pred CCc-----cCCC-Cc-cee-e-----EEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc----
Confidence 110 0001 00 001 1 34445678999999999986422 2222 256888999999998544
Q ss_pred CeEeccCcccEEEEeeEEccC
Q 047296 163 DGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 163 DGi~~~~s~nV~I~n~~i~~g 183 (331)
-+-... .+-..++|+|...
T Consensus 320 -TLy~~~-~Rqyy~~C~I~Gt 338 (502)
T PLN02916 320 -TLFVHS-LRQFYRDCHIYGT 338 (502)
T ss_pred -eeEeCC-CCEEEEecEEecc
Confidence 233332 3467788888754
No 64
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.21 E-value=1.7 Score=44.10 Aligned_cols=129 Identities=17% Similarity=0.162 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCC
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGA 90 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~ 90 (331)
-|-..||+||+++ ... ..-+|+|.+|+|. ..|.++.. ..||+|.| | +|-++..
T Consensus 295 G~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~------------------k~~i~l~G~g~~~TiIt~~~~ 354 (596)
T PLN02745 295 GNFTTISDALAAM-PAKYEGRYVIYVKQGIYD-ETVTVDKK------------------MVNVTMYGDGSQKTIVTGNKN 354 (596)
T ss_pred CCcccHHHHHHhc-cccCCceEEEEEeCCeeE-EEEEEcCC------------------CceEEEEecCCCceEEEECCc
Confidence 3567899999753 221 2347999999998 33555431 23444544 3 1222110
Q ss_pred ceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCCCCCCCeE
Q 047296 91 GLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGNSPNTDGI 165 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi 165 (331)
...| .. ..+. .-.....+++..++++|.|... -.+-+ ..++...+.+|.|.+-+|. +
T Consensus 355 -----~~~g-~~-T~~s------aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDT-----L 416 (596)
T PLN02745 355 -----FADG-VR-TFRT------ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDT-----L 416 (596)
T ss_pred -----ccCC-Cc-ceee------EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccc-----c
Confidence 0000 00 0011 3344478999999999998642 12222 3578899999999986542 2
Q ss_pred eccCcccEEEEeeEEccCCC
Q 047296 166 HVQSSSDVTILNARIGTGDD 185 (331)
Q Consensus 166 ~~~~s~nV~I~n~~i~~gDD 185 (331)
... ..+-..++|+|...=|
T Consensus 417 y~~-~~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 417 YAQ-THRQFYRSCVITGTID 435 (596)
T ss_pred ccC-CCcEEEEeeEEEeecc
Confidence 222 2356888888875433
No 65
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.08 E-value=2.4 Score=42.37 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCcchHHHHHHHHHHHhcc--CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eee
Q 047296 14 DGQTDSTKAFLAAWAKACGS--TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILD 86 (331)
Q Consensus 14 dg~~ddt~Aiq~Ai~~ac~~--~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~id 86 (331)
||. -|=..||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..||+|.| | +|-
T Consensus 213 dGs-G~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~------------------k~~i~l~G~g~~~TiIt 271 (520)
T PLN02201 213 DGT-GNFTTIMDAVLAA-PDYSTKRYVIYIKKGVYL-ENVEIKKK------------------KWNIMMVGDGIDATVIT 271 (520)
T ss_pred CCC-CCccCHHHHHHhc-hhcCCCcEEEEEeCceeE-EEEEecCC------------------CceEEEEecCCCCcEEE
Confidence 443 3577899999753 32 12358999999998 44555432 23444444 2 122
Q ss_pred CCCCceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCCCCC
Q 047296 87 GQGAGLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGNSPN 161 (331)
Q Consensus 87 g~g~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n 161 (331)
++.. ...| .. ..+. .-.....+++..+|++|.|... -.+-+ ...+...+.+|.|..-+|
T Consensus 272 ~~~~-----~~~g-~~-T~~S------AT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD--- 335 (520)
T PLN02201 272 GNRS-----FIDG-WT-TFRS------ATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD--- 335 (520)
T ss_pred eCCc-----cCCC-Cc-ccce------EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC---
Confidence 1111 0000 00 0011 3344568899999999998643 22333 346788999999998544
Q ss_pred CCeEeccCcccEEEEeeEEccC
Q 047296 162 TDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 162 ~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-+-... .+-..++|+|...
T Consensus 336 --TLy~~~-~Rqyy~~C~I~Gt 354 (520)
T PLN02201 336 --TLYTHT-MRQFYRECRITGT 354 (520)
T ss_pred --eeEeCC-CCEEEEeeEEeec
Confidence 233333 3456788888753
No 66
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.99 E-value=1.5 Score=44.27 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcc--CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCCc
Q 047296 19 STKAFLAAWAKACGS--TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGAG 91 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~--~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~~ 91 (331)
+-.-||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..||++.| | +|-++..
T Consensus 269 ~f~tI~~Av~a~-p~~~~~~~vI~ik~GvY~-E~V~i~~~------------------k~~i~~~G~g~~~tiIt~~~~- 327 (565)
T PLN02468 269 KYKTISEALKDV-PEKSEKRTIIYVKKGVYF-ENVRVEKK------------------KWNVVMVGDGMSKTIVSGSLN- 327 (565)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCCceE-EEEEecCC------------------CCeEEEEecCCCCCEEEeCCc-
Confidence 457899999754 22 12358999999998 44555431 23344444 2 1111110
Q ss_pred eeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEe
Q 047296 92 LWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIH 166 (331)
Q Consensus 92 ~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~ 166 (331)
...| .. ..+. .-.....+++..++++|.|...- .+-+ ..++...+.+|.|..-+|. +.
T Consensus 328 ----~~dg-~~-t~~s------aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT-----Ly 390 (565)
T PLN02468 328 ----FVDG-TP-TFST------ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDT-----LY 390 (565)
T ss_pred ----cCCC-CC-ccce------eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccch-----hc
Confidence 0001 00 0011 23344578999999999986432 2222 3578899999999986542 22
Q ss_pred ccCcccEEEEeeEEccC
Q 047296 167 VQSSSDVTILNARIGTG 183 (331)
Q Consensus 167 ~~~s~nV~I~n~~i~~g 183 (331)
... ..-..++|+|...
T Consensus 391 ~~~-~rq~y~~C~I~Gt 406 (565)
T PLN02468 391 AHA-QRQFYRECNIYGT 406 (565)
T ss_pred cCC-CceEEEeeEEecc
Confidence 222 3456888888753
No 67
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.90 E-value=2 Score=43.56 Aligned_cols=130 Identities=19% Similarity=0.150 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc--eeeeCCCCcee
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG--GILDGQGAGLW 93 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G--G~idg~g~~~~ 93 (331)
-|-..||+||+++ ... ..-+|+|.+|+|.= .|.+... -.+|+| ..++.....|+| -..||..
T Consensus 285 G~f~TI~~Av~a~-p~~~~~r~vI~ik~GvY~E-~V~i~~~--k~ni~l------~Gdg~~~TiIt~~~~~~~g~~---- 350 (587)
T PLN02313 285 GDFTTVAAAVAAA-PEKSNKRFVIHIKAGVYRE-NVEVTKK--KKNIMF------LGDGRGKTIITGSRNVVDGST---- 350 (587)
T ss_pred CCCccHHHHHHhc-cccCCceEEEEEeCceeEE-EEEeCCC--CCeEEE------EecCCCccEEEeCCcccCCCC----
Confidence 3567899999754 221 23489999999983 3444321 002222 111222233333 1111110
Q ss_pred ecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEecc
Q 047296 94 ARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQ 168 (331)
Q Consensus 94 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~ 168 (331)
..+. .-.....+++..+|++|+|.... .+-+ ..++...+.+|.|..-+|. +-..
T Consensus 351 ----------t~~s------at~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDT-----Ly~~ 409 (587)
T PLN02313 351 ----------TFHS------ATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDT-----LYVH 409 (587)
T ss_pred ----------ceee------EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccch-----hccC
Confidence 0011 23334678999999999986432 2333 3568889999999985542 3222
Q ss_pred CcccEEEEeeEEccC
Q 047296 169 SSSDVTILNARIGTG 183 (331)
Q Consensus 169 ~s~nV~I~n~~i~~g 183 (331)
. .+-..++|+|...
T Consensus 410 ~-~rq~y~~c~I~Gt 423 (587)
T PLN02313 410 S-NRQFFVKCHITGT 423 (587)
T ss_pred C-CcEEEEeeEEeec
Confidence 2 3457888888754
No 68
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.72 E-value=2.6 Score=42.81 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCCc
Q 047296 19 STKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGAG 91 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~~ 91 (331)
|-.-||+||+++ ... ..-+|+|.+|+|.=..|.+... ..||++.| | +|-++..
T Consensus 283 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~E~~v~i~~~------------------k~ni~l~G~g~~~TiIt~~~~- 342 (587)
T PLN02484 283 TFKTISEAIKKA-PEHSSRRTIIYVKAGRYEENNLKVGRK------------------KTNLMFIGDGKGKTVITGGKS- 342 (587)
T ss_pred CcccHHHHHHhc-cccCCCcEEEEEeCCEEEEEEEEECCC------------------CceEEEEecCCCCeEEecCCc-
Confidence 467799999753 321 2358899999998655666542 23444444 2 1211110
Q ss_pred eeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCCCCCCCeEe
Q 047296 92 LWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGNSPNTDGIH 166 (331)
Q Consensus 92 ~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~ 166 (331)
...+ .. ..+ . .-.....+++..++++|.|... -.+-+ ...+...+.+|.|..-+|. +-
T Consensus 343 ----~~~~-~~-t~~-s-----aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDT-----Ly 405 (587)
T PLN02484 343 ----IFDN-LT-TFH-T-----ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDT-----LY 405 (587)
T ss_pred ----ccCC-Cc-ccc-e-----EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcc-----cc
Confidence 0000 00 001 1 3344568899999999998643 22333 2468889999999986542 22
Q ss_pred ccCcccEEEEeeEEccC
Q 047296 167 VQSSSDVTILNARIGTG 183 (331)
Q Consensus 167 ~~~s~nV~I~n~~i~~g 183 (331)
... ..-..++|+|...
T Consensus 406 ~~~-~Rqyy~~C~I~Gt 421 (587)
T PLN02484 406 VHS-NRQFFRECDIYGT 421 (587)
T ss_pred cCC-CcEEEEecEEEec
Confidence 222 3467788888743
No 69
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.67 E-value=3 Score=41.33 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHhcc--CCCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEc-e----eeeCCCC
Q 047296 18 DSTKAFLAAWAKACGS--TAASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYG-G----ILDGQGA 90 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~--~~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~G-G----~idg~g~ 90 (331)
-+=.-||+||+++ .. ...-+|+|.+|+|. ..|.++.. ..||++.| | +|-++-.
T Consensus 207 G~f~TIq~AI~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~------------------k~nItliGdg~~~TiIt~n~~ 266 (509)
T PLN02488 207 GKYNTVNAAIAAA-PEHSRKRFVIYIKTGVYD-EIVRIGST------------------KPNLTLIGDGQDSTIITGNLS 266 (509)
T ss_pred CCccCHHHHHHhc-hhcCCCcEEEEEeCCeeE-EEEEecCC------------------CccEEEEecCCCceEEEEccc
Confidence 4566799999754 22 12348999999998 34555431 23334443 2 1111100
Q ss_pred ceeecccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCCCCCCCeE
Q 047296 91 GLWARKRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGNSPNTDGI 165 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi 165 (331)
...+ .. ..+. .-.....+++..++++|+|... -.+-+ ..++...+.+|.|..-+|. +
T Consensus 267 -----~~~g-~~-T~~S------ATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDT-----L 328 (509)
T PLN02488 267 -----ASNG-KR-TFYT------ATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDA-----L 328 (509)
T ss_pred -----ccCC-CC-ceee------EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcc-----e
Confidence 0000 00 0011 2334457889999999988643 12333 2468889999999985542 3
Q ss_pred eccCcccEEEEeeEEccC
Q 047296 166 HVQSSSDVTILNARIGTG 183 (331)
Q Consensus 166 ~~~~s~nV~I~n~~i~~g 183 (331)
-.. +.+-..++|+|...
T Consensus 329 y~~-~~RqyyrdC~I~Gt 345 (509)
T PLN02488 329 YPH-RDRQFYRECFITGT 345 (509)
T ss_pred eeC-CCCEEEEeeEEeec
Confidence 222 24567888888754
No 70
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.54 E-value=2.4 Score=42.87 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=41.5
Q ss_pred EEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 116 GFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.....+++..+|++|.|.... .+-+ ..++...+.+|.|..-+|. +.... .+-..++|+|...
T Consensus 342 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~Rqyy~~C~I~Gt 408 (572)
T PLN02990 342 VAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDT-----LYVHS-HRQFFRDCTVSGT 408 (572)
T ss_pred EEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccch-----hccCC-CcEEEEeeEEecc
Confidence 334678999999999986532 2333 3568899999999985542 22222 3567788888753
No 71
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.46 E-value=0.29 Score=42.65 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=41.4
Q ss_pred cceEEece----EEeCCCceEEEEe-ceecEEEEEEEEEcC-----------CCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 121 NNILINGL----TSQNSQMFHVVIN-GCHNVKVQGMRVSAS-----------GNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 121 ~nv~I~~v----~i~~s~~~~i~~~-~~~nv~i~n~~i~~~-----------~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
.|-+|.|. .+. .+++.+. .++||.|+|++|... ......|+|.+..++||+|+.|.+..+
T Consensus 21 snkTi~G~g~~~~i~---~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 21 SNKTIIGIGAGATII---GGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp SSEEEEEETTTTEEE---SSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred CCcEEEEccCCeEEE---CceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 56666662 222 2456665 899999999999982 123478899999999999999999876
No 72
>PLN02314 pectinesterase
Probab=92.86 E-value=4.6 Score=41.05 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=41.7
Q ss_pred EEEEeecceEEeceEEeCCCce----EEEE-eceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccC
Q 047296 115 LGFSNSNNILINGLTSQNSQMF----HVVI-NGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTG 183 (331)
Q Consensus 115 i~~~~~~nv~I~~v~i~~s~~~----~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~g 183 (331)
-.....+++..+|++|.|...- .+-+ ...+...+.+|.|..-+|. +.... ..-..++|+|...
T Consensus 359 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~rq~y~~C~I~Gt 426 (586)
T PLN02314 359 TFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDT-----LYAHS-NRQFYRDCDITGT 426 (586)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccch-----heeCC-CCEEEEeeEEEec
Confidence 3444689999999999986421 2222 3567889999999985542 32222 3467788888753
No 73
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=92.83 E-value=2.8 Score=38.91 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=37.8
Q ss_pred EEEeecceEEeceEEeCCCceE---------EEEeceecEEEEEEEEEcCCCCCCCCeEeccC-----------cccEEE
Q 047296 116 GFSNSNNILINGLTSQNSQMFH---------VVINGCHNVKVQGMRVSASGNSPNTDGIHVQS-----------SSDVTI 175 (331)
Q Consensus 116 ~~~~~~nv~I~~v~i~~s~~~~---------i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-----------s~nV~I 175 (331)
.+..-+++..+++++.|...-+ ......+.+.+++|++...++ -+.+.. .-+-.+
T Consensus 184 ~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Qd-----TlFv~~~~~~~~~~tn~~~R~yf 258 (405)
T COG4677 184 FWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQD-----TLFVGNSGVQNRLETNRQPRTYF 258 (405)
T ss_pred heeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccc-----eEEecCCCCccccccCcchhhhe
Confidence 3444556666666666543221 233467889999999998554 222221 125678
Q ss_pred EeeEEccC
Q 047296 176 LNARIGTG 183 (331)
Q Consensus 176 ~n~~i~~g 183 (331)
+||+|+..
T Consensus 259 tNsyI~Gd 266 (405)
T COG4677 259 TNSYIEGD 266 (405)
T ss_pred ecceeccc
Confidence 99999843
No 74
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.70 E-value=3.9 Score=42.06 Aligned_cols=113 Identities=10% Similarity=0.049 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHhccC--CCcEEEeCCCeEEEEEEEEecccccceEEEccceeEEEeeeeeEEEEceeeeCCCCceeec
Q 047296 18 DSTKAFLAAWAKACGST--AASTIYVPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEHVNGVYIYGGILDGQGAGLWAR 95 (331)
Q Consensus 18 ddt~Aiq~Ai~~ac~~~--~g~~v~iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~~~ni~I~GG~idg~g~~~~~~ 95 (331)
-|-.-||+||+++ -.. ..-+|+|-+|+|.= .|.+... -.+|+| ..++.....|+| +.. +
T Consensus 260 G~f~TIq~Av~a~-P~~~~~r~vI~Ik~GvY~E-~V~I~~~--k~~i~l------~Gdg~~~TiIt~-----~~~-~--- 320 (670)
T PLN02217 260 GQYKTINEALNFV-PKKKNTTFVVHIKAGIYKE-YVQVNRS--MTHLVF------IGDGPDKTVISG-----SKS-Y--- 320 (670)
T ss_pred CCccCHHHHHHhc-cccCCceEEEEEeCCceEE-EEEEcCC--CCcEEE------EecCCCCeEEEc-----CCc-c---
Confidence 3567899999753 321 23489999999983 3444331 002222 111222223333 110 0
Q ss_pred ccCCCCCCCCCCcccceeEEEEEeecceEEeceEEeCCCc----eEEEE-eceecEEEEEEEEEcCCC
Q 047296 96 KRSGNNNCPSGAKESWKIILGFSNSNNILINGLTSQNSQM----FHVVI-NGCHNVKVQGMRVSASGN 158 (331)
Q Consensus 96 ~~~~~~~~~~~p~~~~~~~i~~~~~~nv~I~~v~i~~s~~----~~i~~-~~~~nv~i~n~~i~~~~~ 158 (331)
..| .. ..+. .-.....+++..+|++|.|... -.+-+ ...+...+.+|.|..-+|
T Consensus 321 -~dg-~~-T~~S------AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD 379 (670)
T PLN02217 321 -KDG-IT-TYKT------ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD 379 (670)
T ss_pred -CCC-CC-ccce------EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc
Confidence 000 00 0011 2333468899999999998643 22333 357888999999998554
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.91 E-value=0.36 Score=30.83 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=26.8
Q ss_pred EEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEc
Q 047296 138 VVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIG 181 (331)
Q Consensus 138 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 181 (331)
+.+..+.+.+|++.++.. +.|||.+..+.+-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 455566666777777775 556777777777777777665
No 76
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=89.04 E-value=22 Score=34.09 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=38.0
Q ss_pred eecceEEeceEEeCCC-ceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEc
Q 047296 119 NSNNILINGLTSQNSQ-MFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIG 181 (331)
Q Consensus 119 ~~~nv~I~~v~i~~s~-~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 181 (331)
...++++.++.+...+ +-+..+....++++.+|.+.+. +. .-+..-....|++|.|.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g--~cl~~~~~~~VrGC~F~ 176 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HG--TCLESWAGGEVRGCTFY 176 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cc--eeEEEcCCcEEeeeEEE
Confidence 3456788888887655 5667777777888888888863 22 23333346778888875
No 77
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=87.93 E-value=10 Score=35.50 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=8.8
Q ss_pred EEEEEeecceEEeceEE
Q 047296 114 ILGFSNSNNILINGLTS 130 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i 130 (331)
.|+++++.+..|.+-.+
T Consensus 152 GI~vyNa~~a~V~~ndi 168 (408)
T COG3420 152 GIYVYNAPGALVVGNDI 168 (408)
T ss_pred ceEEEcCCCcEEEcCcc
Confidence 45555555555554443
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=78.80 E-value=5.1 Score=36.62 Aligned_cols=99 Identities=18% Similarity=0.322 Sum_probs=60.8
Q ss_pred EEEEEeecceEEeceEEeCC-Cce---------EEEEeceecEEEEEEEEEcCCCCCCCCeE----eccCcccEEEEeeE
Q 047296 114 ILGFSNSNNILINGLTSQNS-QMF---------HVVINGCHNVKVQGMRVSASGNSPNTDGI----HVQSSSDVTILNAR 179 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s-~~~---------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi----~~~~s~nV~I~n~~ 179 (331)
+++.++-+++.|++++-+|- |.+ .+.+..|+|..|+|+.+.++....-.-|+ .+.--+|....|+.
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ 340 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQ 340 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEe
Confidence 89999999999999998762 322 58899999999999999875321111111 12224677777777
Q ss_pred EccCCCeEEeecceEecccCcccccccEEEEEEEe
Q 047296 180 IGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKY 214 (331)
Q Consensus 180 i~~gDD~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n 214 (331)
+.+..=+-.+ .||.|.|- .......+.|+.+..
T Consensus 341 ldn~~l~ykl-rgiqissg-natsfvaitn~~mkr 373 (464)
T PRK10123 341 LDNTHLAYKL-RGIQISAG-NAVSFVALTNIEMKR 373 (464)
T ss_pred ecccccceee-eeeEeccC-CcceEEEEeeeehhh
Confidence 6654322222 46666442 111123456666544
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=75.38 E-value=8 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=35.4
Q ss_pred EEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEc
Q 047296 115 LGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSA 155 (331)
Q Consensus 115 i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~ 155 (331)
|.+..+.+.+|++-++.+... ++++..+.+-+|++.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 678889999999999998888 9999999998999888875
No 80
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=73.43 E-value=64 Score=28.39 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=14.6
Q ss_pred cceEEeceEEeCCCceEEEEeceecEEEEEEEEEc
Q 047296 121 NNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSA 155 (331)
Q Consensus 121 ~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~ 155 (331)
+..+++++.|-.+..-++|... +.+|+|+....
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed 93 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWED 93 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc
Confidence 4455555555333334444444 34444444443
No 81
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=64.09 E-value=43 Score=32.49 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=33.8
Q ss_pred cccEEEEeeE-EccCCCeEEeecceEecccCccc--------------ccccEEEEEEEe-----eeCCCCCceEEEEEE
Q 047296 170 SSDVTILNAR-IGTGDDCVSVGHGISIGSLGKEV--------------HEAGVQNVTVKY-----SWGRPSTGFSRNILF 229 (331)
Q Consensus 170 s~nV~I~n~~-i~~gDD~i~i~~Gi~iGs~g~~~--------------~~~~v~nv~i~n-----~~~~~~~g~v~nI~~ 229 (331)
+-|..++|+. +.+-.|++-++..-.++++..+. ..--|+||.+++ -|..+.+++|+||+.
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~~~yvsni~~ 342 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGKGGYVSNITV 342 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECCS-EEEEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCCCceEeeEEe
Confidence 3456666655 34556666554332233433222 123488999988 343447889999888
Q ss_pred Eeeeec
Q 047296 230 QHAVMK 235 (331)
Q Consensus 230 ~ni~~~ 235 (331)
+++.-.
T Consensus 343 ~d~~g~ 348 (549)
T PF09251_consen 343 QDCAGA 348 (549)
T ss_dssp ES-SSE
T ss_pred ecccCC
Confidence 876543
No 82
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=60.51 E-value=74 Score=30.94 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred ceecEEEEEEEEEcCCCCCCCCeEeccCc------------------------ccEEEEeeEEccCCCeEEeecceEecc
Q 047296 142 GCHNVKVQGMRVSASGNSPNTDGIHVQSS------------------------SDVTILNARIGTGDDCVSVGHGISIGS 197 (331)
Q Consensus 142 ~~~nv~i~n~~i~~~~~~~n~DGi~~~~s------------------------~nV~I~n~~i~~gDD~i~i~~Gi~iGs 197 (331)
.|-|+.++++....+ --||+|+.+- .|=.|+|...+. .+|+.+|.
T Consensus 262 RnYnLqF~d~~~i~~----~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~-------~lGVG~~~ 330 (549)
T PF09251_consen 262 RNYNLQFRDSVTISP----VWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRG-------SLGVGIGM 330 (549)
T ss_dssp -EBS-EEEEEEEES-----SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--------SSESCEE
T ss_pred ceeeEEEeccceEEE----eecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheec-------cceeeeee
Confidence 456788888877764 3345555321 234566666553 34666665
Q ss_pred cCcccccccEEEEEEEe
Q 047296 198 LGKEVHEAGVQNVTVKY 214 (331)
Q Consensus 198 ~g~~~~~~~v~nv~i~n 214 (331)
-|+ .+.|+||++++
T Consensus 331 DG~---~~yvsni~~~d 344 (549)
T PF09251_consen 331 DGK---GGYVSNITVQD 344 (549)
T ss_dssp ECC---S-EEEEEEEES
T ss_pred cCC---CceEeeEEeec
Confidence 553 45899999998
No 83
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=43.93 E-value=1.3e+02 Score=29.30 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=46.0
Q ss_pred EEEEEeecceEEeceEEeCCCceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEccCCCeEEeecce
Q 047296 114 ILGFSNSNNILINGLTSQNSQMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGI 193 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i~~Gi 193 (331)
.|..+.+.| +|++=+|+++... +.+.+-.+-+|++-.|.......++-||.+.+ ++=+|.|.+|..-.. ..+..++
T Consensus 217 IISvKS~~N-~ir~Ntf~es~G~-ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~gl~g-~~~~~~~ 292 (425)
T PF14592_consen 217 IISVKSSDN-TIRNNTFRESQGS-LTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFEGLTG-TRFRGAL 292 (425)
T ss_dssp EEEEESBT--EEES-EEES-SSE-EEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEEESSB--TTTTSE
T ss_pred EEEeecCCc-eEeccEEEeccce-EEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceeecccc-ceeecce
Confidence 344443333 4455555555433 55665566666666666543223455677766 344555666543110 0000001
Q ss_pred EecccCcccccccEEEEEEEeeeCCCCCceEEEEEEEeeeecCCCccEEEE
Q 047296 194 SIGSLGKEVHEAGVQNVTVKYSWGRPSTGFSRNILFQHAVMKSVDNPIVID 244 (331)
Q Consensus 194 ~iGs~g~~~~~~~v~nv~i~n~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~ 244 (331)
.+.+-. .+. +..+.-.+.|+.+.+-++-++..+|.+.
T Consensus 293 ------------~v~ng~-p~s-~ln~y~qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 293 ------------AVMNGV-PNS-PLNRYDQVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp ------------E-EEE---BS-TTSTT---BSEEEES-EEES-SEEEESS
T ss_pred ------------eeccCC-CCC-CcccccccceeEEecceEEccCCceEEc
Confidence 111110 010 1113446889999999999998888774
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=42.33 E-value=32 Score=17.96 Aligned_cols=14 Identities=43% Similarity=0.449 Sum_probs=9.1
Q ss_pred ccEEEEeeEEccCC
Q 047296 171 SDVTILNARIGTGD 184 (331)
Q Consensus 171 ~nV~I~n~~i~~gD 184 (331)
.+++|++|.|....
T Consensus 2 ~~~~i~~n~i~~~~ 15 (26)
T smart00710 2 SNVTIENNTIRNNG 15 (26)
T ss_pred CCEEEECCEEEeCC
Confidence 46777777776543
No 85
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=40.85 E-value=60 Score=28.60 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=31.1
Q ss_pred cEEEEEEEEEcCCCCCCCCeEeccCcccEEEEeeEEcc-CCCeEEe
Q 047296 145 NVKVQGMRVSASGNSPNTDGIHVQSSSDVTILNARIGT-GDDCVSV 189 (331)
Q Consensus 145 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~i~i 189 (331)
..+|+|+.|-. +..||||..+ +-+|+|+.... ++|++.+
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~ 101 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATF 101 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEE
Confidence 67899998865 4689999987 78999999975 8888877
No 86
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=40.36 E-value=1.3e+02 Score=25.92 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=42.4
Q ss_pred cceEEeceEEeCCCceEEEEe---------ceecEEEEEEEEEcCCCCC---CCCeEeccCcccEEEEeeEEcc
Q 047296 121 NNILINGLTSQNSQMFHVVIN---------GCHNVKVQGMRVSASGNSP---NTDGIHVQSSSDVTILNARIGT 182 (331)
Q Consensus 121 ~nv~I~~v~i~~s~~~~i~~~---------~~~nv~i~n~~i~~~~~~~---n~DGi~~~~s~nV~I~n~~i~~ 182 (331)
+++.|-+-+|.+...+++.+. ..++|.|++-.|......+ ...||-..+=.|.+|+|..|..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG 75 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDG 75 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecc
Confidence 456666666666666655543 2358888888888754333 4557877777788999999874
No 87
>PLN02773 pectinesterase
Probab=30.71 E-value=3.5e+02 Score=25.36 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=49.1
Q ss_pred eceecEEEEEEEEEcCCCC--CCCCeEeccCcccEEEEeeEEccCCCeEEeecceEecccCcccccccEEEEEEEe----
Q 047296 141 NGCHNVKVQGMRVSASGNS--PNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKY---- 214 (331)
Q Consensus 141 ~~~~nv~i~n~~i~~~~~~--~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n---- 214 (331)
..++++..+|++|.+.... ..+-.+.+. ++.+.+.||.|...-|.+....| ...++|.+|+.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~g-----------r~yf~~c~IeG~VDF 166 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHYG-----------KQYLRDCYIEGSVDF 166 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCCC-----------CEEEEeeEEeecccE
Confidence 3467889999999986321 122234443 58899999999987776655211 34677777776
Q ss_pred eeCCCCCceEEEEEEEeeeecCC
Q 047296 215 SWGRPSTGFSRNILFQHAVMKSV 237 (331)
Q Consensus 215 ~~~~~~~g~v~nI~~~ni~~~~~ 237 (331)
-|+. -...|+++.+...
T Consensus 167 IFG~------g~a~Fe~c~i~s~ 183 (317)
T PLN02773 167 IFGN------STALLEHCHIHCK 183 (317)
T ss_pred Eeec------cEEEEEeeEEEEc
Confidence 2422 1346666666543
No 88
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=28.28 E-value=4.8e+02 Score=24.10 Aligned_cols=133 Identities=13% Similarity=0.117 Sum_probs=62.8
Q ss_pred ceecEEEEEEEEEcCCCC--CCCCeEeccCcccEEEEeeEEccCCCeEEeecceEecccCcccccccEEEEEEEe----e
Q 047296 142 GCHNVKVQGMRVSASGNS--PNTDGIHVQSSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKY----S 215 (331)
Q Consensus 142 ~~~nv~i~n~~i~~~~~~--~n~DGi~~~~s~nV~I~n~~i~~gDD~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n----~ 215 (331)
..+++.++|++|.+.... ..+-.+.+. ++++.+.+|.|...-|-+....+ ...++|.+|+. -
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~~-----------r~y~~~c~IeG~vDFI 152 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANGG-----------RQYFKNCYIEGNVDFI 152 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-SS-----------EEEEES-EEEESEEEE
T ss_pred cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeeccc-----------eeEEEeeEEEecCcEE
Confidence 467999999999985321 123334544 47899999999987776654211 23566777766 3
Q ss_pred eCCCCCceEEEEEEEeeeecCCC----ccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeecc-------eEEEEe
Q 047296 216 WGRPSTGFSRNILFQHAVMKSVD----NPIVIDQNYCRDNKNCPGKASGVKISDVTYQDIHGTSVTK-------VVVKID 284 (331)
Q Consensus 216 ~~~~~~g~v~nI~~~ni~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~i~nI~f~nI~~~~~~~-------~~~~i~ 284 (331)
|+. +. ..|+++.+.... ..-.|...-.... ..=....|.|.+++.... ...+ .
T Consensus 153 fG~-~~-----a~f~~c~i~~~~~~~~~~~~ItA~~r~~~---------~~~~G~vF~~c~i~~~~~~~~~~~~~~~y-L 216 (298)
T PF01095_consen 153 FGN-GT-----AVFENCTIHSRRPGGGQGGYITAQGRTSP---------SQKSGFVFDNCTITGDSGVSPSYSDGSVY-L 216 (298)
T ss_dssp EES-SE-----EEEES-EEEE--SSTSSTEEEEEE---CT---------TSS-EEEEES-EEEESTTTCGGCCCSTEE-E
T ss_pred ECC-ee-----EEeeeeEEEEeccccccceeEEeCCcccc---------CCCeEEEEEEeEEecCccccccccceeEE-e
Confidence 432 22 235555554321 1234443211100 012567788888776421 1222 3
Q ss_pred cCCCCceeeEEEEeEEEE
Q 047296 285 CSQKYPCSGIKFEDVKLI 302 (331)
Q Consensus 285 ~~~~~~~~ni~~~nv~i~ 302 (331)
|.|=.+-..+.|-|..+.
T Consensus 217 GRpW~~~s~vvf~~t~m~ 234 (298)
T PF01095_consen 217 GRPWGPYSRVVFINTYMD 234 (298)
T ss_dssp E--SSEETEEEEES-EE-
T ss_pred cCcccceeeEEEEccccC
Confidence 444344456777777665
No 89
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=28.04 E-value=2.2e+02 Score=21.98 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=41.4
Q ss_pred EeecceEEeceEEeCC---CceEEEEeceecEEEEEEEEEcCCCCCCCCeEeccCcccEEEEe-eEEccCCCeE
Q 047296 118 SNSNNILINGLTSQNS---QMFHVVINGCHNVKVQGMRVSASGNSPNTDGIHVQSSSDVTILN-ARIGTGDDCV 187 (331)
Q Consensus 118 ~~~~nv~I~~v~i~~s---~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n-~~i~~gDD~i 187 (331)
..+.+..+.+-.+.+. ..+++.+..+.+..+.+-.+. .. .. .+|+++..+....+.+ ..+....|++
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcE
Confidence 5566666666666554 377788776666555555554 21 12 6888888777777777 4444455544
No 90
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=27.25 E-value=69 Score=26.98 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=5.9
Q ss_pred CCCCceee
Q 047296 87 GQGAGLWA 94 (331)
Q Consensus 87 g~g~~~~~ 94 (331)
|.|..||=
T Consensus 143 g~G~NWWC 150 (168)
T TIGR02837 143 GAGANWWC 150 (168)
T ss_pred cCCcceEE
Confidence 56788883
No 91
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=24.68 E-value=5.2e+02 Score=23.27 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=43.4
Q ss_pred EEEEEeecceEEeceEEeCCCceEEEEecee-cEEEEEEEEEcCCCCCCCCeEeccCcccE---EEEeeEEccCCCeEEe
Q 047296 114 ILGFSNSNNILINGLTSQNSQMFHVVINGCH-NVKVQGMRVSASGNSPNTDGIHVQSSSDV---TILNARIGTGDDCVSV 189 (331)
Q Consensus 114 ~i~~~~~~nv~I~~v~i~~s~~~~i~~~~~~-nv~i~n~~i~~~~~~~n~DGi~~~~s~nV---~I~n~~i~~gDD~i~i 189 (331)
.+.+..+ +.+|++.+|.+....++.+.... +-.+.+..|....-..+.-||.+.....- +|+|..|....-+|.+
T Consensus 116 Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 116 GIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIVA 194 (246)
T ss_pred EEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeEe
Confidence 6777666 89999999988766676665543 33444444433211112337766543333 6777777654334543
No 92
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=22.58 E-value=69 Score=26.27 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhccCCCcEEEeCCCeEE--EEEEEE
Q 047296 19 STKAFLAAWAKACGSTAASTIYVPPGRYL--LHNVVF 53 (331)
Q Consensus 19 dt~Aiq~Ai~~ac~~~~g~~v~iP~G~y~--~~~l~l 53 (331)
-.+|.++.|++||. ..|.+.|-+|+|- +++-++
T Consensus 111 v~~Amr~Gi~Aa~~--~~Gv~~IsAGNYGGkLG~~~f 145 (150)
T PF02741_consen 111 VAEAMRAGIEAACA--VPGVVRISAGNYGGKLGPYHF 145 (150)
T ss_dssp HHHHHHHHHHHHTT--STTEEEEE---STTSSSSEEE
T ss_pred HHHHHHHHHHHHhc--CCCeEEEecCCcCCccCccee
Confidence 34677777877774 4789999999983 554443
No 93
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.99 E-value=77 Score=28.16 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=26.6
Q ss_pred EEEeeecCccCCCCcch------------HHHHHHHHHHHhccCCCcEEEe--CCCeEE
Q 047296 3 TYNVISLGAKSDGQTDS------------TKAFLAAWAKACGSTAASTIYV--PPGRYL 47 (331)
Q Consensus 3 ~~nv~d~Ga~~dg~~dd------------t~Aiq~Ai~~ac~~~~g~~v~i--P~G~y~ 47 (331)
.+|++||...--.+.|| .+-|-+||+++++.. +..|++ |.|.=+
T Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~-~~~vi~lsP~G~~f 92 (240)
T COG0336 35 VVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK-KAKVILLSPQGKPF 92 (240)
T ss_pred eecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc-CCeEEEECCCCCcc
Confidence 45666676544333444 466999998876543 344444 888743
No 94
>PF08118 MDM31_MDM32: Yeast mitochondrial distribution and morphology (MDM) proteins ; InterPro: IPR012571 Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA [].; GO: 0007005 mitochondrion organization, 0005743 mitochondrial inner membrane
Probab=21.41 E-value=2.8e+02 Score=27.80 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=32.8
Q ss_pred eCCCeEEEEEEEEecccccceEEEccceeEEEee-eeeEEEEc--eeeeCCCC
Q 047296 41 VPPGRYLLHNVVFQGQCRNNDITIHAGNWILFEH-VNGVYIYG--GILDGQGA 90 (331)
Q Consensus 41 iP~G~y~~~~l~l~~~~~~~~itlg~~~~i~~~~-~~ni~I~G--G~idg~g~ 90 (331)
...|.|.--.|.+..- +|+|.-..|+...+ .+++.|.| |.+|-.-.
T Consensus 150 ~dd~nyt~fdlti~~v----~vtLSf~kWl~GkGlI~dv~v~GvrGvvdr~~v 198 (503)
T PF08118_consen 150 EDDGNYTQFDLTIDQV----DVTLSFKKWLNGKGLIKDVEVKGVRGVVDRTHV 198 (503)
T ss_pred cccCCeeEEEEEEEEE----EEEEEhhHhhcCCcceeeEEEEeeeeeEecccc
Confidence 4567788666777642 57776667776654 47899999 99987654
No 95
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=20.76 E-value=9.8e+02 Score=25.03 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=39.1
Q ss_pred ceecEEEEEEEEEcCCCCCCCCeEecc-CcccEEEEeeEEccCCCeEEeecceEecccCcccccccEEEEEEEe
Q 047296 142 GCHNVKVQGMRVSASGNSPNTDGIHVQ-SSSDVTILNARIGTGDDCVSVGHGISIGSLGKEVHEAGVQNVTVKY 214 (331)
Q Consensus 142 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~i~i~~Gi~iGs~g~~~~~~~v~nv~i~n 214 (331)
..+++..+|++|.|.........+-+. .++...+.||.|...-|-+.... ....+++.+|+.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-----------~Rqyy~~C~I~G 397 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-----------HRQFYRDCTISG 397 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-----------CcEEEEeCEEEE
Confidence 456888899999886432222333332 35788999999987666554311 134677777776
No 96
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=20.55 E-value=1.6e+02 Score=22.27 Aligned_cols=39 Identities=23% Similarity=0.127 Sum_probs=21.4
Q ss_pred EeeecCccCCCC-------cchHHHHHHHHHHHhccCCCcEEEeCC
Q 047296 5 NVISLGAKSDGQ-------TDSTKAFLAAWAKACGSTAASTIYVPP 43 (331)
Q Consensus 5 nv~d~Ga~~dg~-------~ddt~Aiq~Ai~~ac~~~~g~~v~iP~ 43 (331)
.+.|.|.++--. -||..+=.+||-+||.++|.|+++-|-
T Consensus 40 ~vEDlG~~~r~~~~~a~~~G~dy~~~~~~L~~al~~~G~G~LvHP~ 85 (93)
T PF07157_consen 40 WVEDLGRKARRIRVTAFFVGDDYEAQRDALIAALEAPGPGELVHPW 85 (93)
T ss_pred CeeecCCCCcEEEEEEEEECCcHHHHHHHHHHHHcCCCCeEEecCC
Confidence 355666654321 234433333444556667888888773
Done!