BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047297
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 100/206 (48%), Gaps = 45/206 (21%)

Query: 2   AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMEXXXX 61
           A  P +GG V      + P+YC P+PID AIVRK   L+ GN  + D N  + L +    
Sbjct: 18  APTPQAGGVV------VDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNG-NLLFKVKEP 70

Query: 62  XXXXXXNRI---------VTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTT 112
                  R+         VTLR   ++ H+RWQVFRG ST++R L+++ K SS      T
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSX-LQLKT 129

Query: 113 KLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------- 157
           KLDVFL +N  +  CDFRV    S L    SC +YAGES  IV Q               
Sbjct: 130 KLDVFLGHNKDEKRCDFRV--KGSWLER--SCVVYAGESDAIVAQXHRKHTVQSVFLGKD 185

Query: 158 -----CIP----TLIVALILILDEIN 174
                  P      I +L++ILD++N
Sbjct: 186 NFSVTVYPNVDYAFIASLVVILDDVN 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,362,191
Number of Sequences: 62578
Number of extensions: 137911
Number of successful extensions: 463
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 1
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)