BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047297
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750
PE=1 SV=1
Length = 217
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 108/205 (52%), Gaps = 43/205 (20%)
Query: 2 AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPL 55
A P +GG V + P+YC P+PID+AIVRK+ L+ GN + D N P+
Sbjct: 18 APTPQAGGVV------VDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPV 71
Query: 56 --MERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
+ +RVLL G G +VTLR ++ H+RWQVFRG ST++R L+++ K SS TK
Sbjct: 72 FGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSS-MLQLKTK 130
Query: 114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ---------------- 157
LDVFL +N + CDFRV S L SC +YAGES IV Q
Sbjct: 131 LDVFLGHNKDEKRCDFRV--KGSWLER--SCVVYAGESDAIVAQMHRKHTVQSVFLGKDN 186
Query: 158 ----CIP----TLIVALILILDEIN 174
P I +L++ILD++N
Sbjct: 187 FSVTVYPNVDYAFIASLVVILDDVN 211
>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740
PE=2 SV=2
Length = 194
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 101/198 (51%), Gaps = 36/198 (18%)
Query: 15 VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPL--MERRRVLLGGV 66
+ ++SP +C P+PI+L IVRKV L+ GN V D N PL + +R+LL
Sbjct: 1 MAIVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAY 60
Query: 67 GNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDA 126
I+TLR N ++ H+RW V+RG+ST++ L+++ K SS KLD+FLA+N
Sbjct: 61 DTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKI 120
Query: 127 CDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------------CIP----TL 162
CDF V S + SC +YAG+S IV Q P
Sbjct: 121 CDFHV--KGSWIDR--SCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAF 176
Query: 163 IVALILILDEINHARSSS 180
IV+LI+ILD+IN S
Sbjct: 177 IVSLIVILDDINREDSED 194
>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
PE=2 SV=2
Length = 224
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 13/161 (8%)
Query: 5 PSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN--------DVSPLM 56
PS+ ++ P+YC HP+DLAIVRKV ++ GN + + D +
Sbjct: 15 PSAPPPPPKAGVIVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSL 74
Query: 57 ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDV 116
+R+L+ G G +++TL+ +T H+RW VFRG STE L+++ K S TTKLDV
Sbjct: 75 HEKRILMDGFGTKVLTLKGKIMTMHDRWLVFRGGSTEEVDLLYTVK-RSNMVQITTKLDV 133
Query: 117 FLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ 157
FLA+N + CD+R+ + SC +YAG+S I+ Q
Sbjct: 134 FLADNIEQKKCDYRL----EGVWLETSCFVYAGDSDIILAQ 170
>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1
Length = 207
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 13/147 (8%)
Query: 17 VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPL--MERRRVLLGGVGN 68
++ +YC P+P+ LAIVRKV ++ GN + + PL + +R+LL G
Sbjct: 7 IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66
Query: 69 RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
+++TLR +T H+RWQVFRG STE L+++ K SS KL+VFLANN + CD
Sbjct: 67 KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSS-MIQLAPKLEVFLANNVEEKICD 125
Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIV 155
F+V + L + SC +YAG+S TI+
Sbjct: 126 FKV--KGAWLDD--SCVVYAGDSDTII 148
>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900
PE=3 SV=1
Length = 185
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 36/195 (18%)
Query: 1 MAQQ-PSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGN--IDVKDTNDVSPL-- 55
MA+Q P+S ++P++ ++ P P+DL I ++GN VK +PL
Sbjct: 1 MAKQDPTSSNT---MLPLVGSEFVRPQPLDLTITGDTVKDATGNKVFKVK-----TPLFG 52
Query: 56 MERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLD 115
+ +R+L+ + IVT+++ ++H+RWQV+RG + + IF+ K SS T+++
Sbjct: 53 LHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK--IFTVKRSST-VQLKTRVE 109
Query: 116 VFLANN-TRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIP-------------- 160
VFL +N TR+ +CDF + R + +CTIY +S+ I+ Q
Sbjct: 110 VFLKHNQTRESSCDFTI---KGRFMK-RACTIYVADSTKIIAQVYEGHERLVATIYPNVD 165
Query: 161 -TLIVALILILDEIN 174
IV LI I D IN
Sbjct: 166 YAFIVTLIFIFDLIN 180
>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180
PE=2 SV=2
Length = 204
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 15 VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGGV 66
+ V+S Q+C P+P+DL + RKV S +V D + L R+RV+
Sbjct: 16 ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPA 75
Query: 67 GNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLA--NNTRK 124
G I+++R + N+W+V GES ER L+F+ + S S T +DVFL NN +K
Sbjct: 76 GFTILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQA-VSLKTSVDVFLPENNNVKK 134
Query: 125 -DACDFRVVKSSSRLS 139
+ CDF S +S
Sbjct: 135 TNTCDFHASGGYSNIS 150
>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986
PE=3 SV=1
Length = 197
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 14 LVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGG 65
+V V+ +C P+ +L + R+ L DV D ++ + R+RVL
Sbjct: 1 MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60
Query: 66 VGNRIVTLRLN-TITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFL-ANNTR 123
G ++++R + W+V++G+STE +L+FSA+ S T LDV L + +
Sbjct: 61 AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAR-EPNLLSFKTSLDVTLPPDQSS 119
Query: 124 KDAC----DF----RVVKSSSRLSEPPSCTIYA 148
D DF R + SS +L EP T+ A
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLA 152
>sp|Q8GWL2|LOR7_ARATH Protein LURP-one-related 7 OS=Arabidopsis thaliana GN=At2g30270
PE=2 SV=1
Length = 182
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 27 PIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQ-HNR-W 84
P+DL +K+ LSSG++ D+++ + R+ + L +I++ HN W
Sbjct: 19 PVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDSSGVPLFSISRLHNGVW 78
Query: 85 QVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSC 144
++ +G+ +R+ L+ + K +S FS+T +V A + ++ V+K + SC
Sbjct: 79 ELHKGDVEKRKDLVLTVKRTSKRFSKTES-EVSFAGESSENL----VIKG---VPFQKSC 130
Query: 145 TIYAGES 151
TIY+ +S
Sbjct: 131 TIYSQDS 137
>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810
PE=2 SV=1
Length = 220
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 61 VLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISS 105
VL+ G ++T++ T H RW+ F GE +E + IFS + SS
Sbjct: 74 VLMDATGKCLLTVKRKRPTLHQRWEGFLGERSEGQKPIFSVRRSS 118
>sp|B1MZM2|ADDA_LEUCK ATP-dependent helicase/nuclease subunit A OS=Leuconostoc citreum
(strain KM20) GN=addA PE=3 SV=1
Length = 1236
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 12 ANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIV 71
A LVP + +P D+ V +T++ N+ + D S E+R+ + N+I+
Sbjct: 502 AKLVPKAN------YPTDVTPVFNMTIIKQPNVTTSEDEDESQEFEKRQAQYAQLANQIL 555
Query: 72 TLRLNTI 78
+LR TI
Sbjct: 556 SLRDTTI 562
>sp|P42497|PHYD_ARATH Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2
Length = 1164
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 42 GNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHL 97
G++DVK +D S L+ER +G V N +V+ + + + N Q+ R TE + +
Sbjct: 985 GDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQVMLVVRERN-LQLIRNIPTEVKSM 1039
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,705,582
Number of Sequences: 539616
Number of extensions: 2464761
Number of successful extensions: 6415
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6386
Number of HSP's gapped (non-prelim): 17
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)