Query 047297
Match_columns 195
No_of_seqs 108 out of 341
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 4E-35 8.6E-40 240.7 15.4 148 16-169 2-187 (187)
2 COG4894 Uncharacterized conser 99.8 1.9E-19 4.1E-24 142.3 4.7 126 28-175 6-158 (159)
3 PF03803 Scramblase: Scramblas 98.8 3.9E-07 8.4E-12 76.2 17.1 137 29-176 23-220 (221)
4 COG4894 Uncharacterized conser 97.7 0.00025 5.4E-09 56.8 8.6 94 24-121 26-140 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.1 0.0026 5.7E-08 52.0 7.9 72 57-134 27-99 (187)
6 KOG0621 Phospholipid scramblas 95.6 0.87 1.9E-05 40.5 15.1 133 41-179 98-283 (292)
7 PF03803 Scramblase: Scramblas 91.4 4.7 0.0001 33.4 11.5 94 57-160 42-148 (221)
8 PF02974 Inh: Protease inhibit 61.6 40 0.00087 24.8 6.4 31 57-90 61-91 (99)
9 PF01167 Tub: Tub family; Int 57.6 70 0.0015 27.5 8.1 75 67-149 6-87 (246)
10 PF04170 NlpE: NlpE N-terminal 40.2 38 0.00082 24.3 3.2 14 57-70 70-83 (87)
11 PRK15393 NUDIX hydrolase YfcD; 34.2 96 0.0021 25.0 5.0 47 43-90 11-73 (180)
12 PF11191 DUF2782: Protein of u 33.5 1.6E+02 0.0036 21.7 5.9 61 24-88 35-104 (105)
13 PF07680 DoxA: TQO small subun 26.7 3.2E+02 0.007 21.5 7.4 41 43-83 32-74 (133)
14 TIGR02150 IPP_isom_1 isopenten 25.5 1.2E+02 0.0027 23.6 4.2 43 45-87 2-60 (158)
15 PF15072 DUF4539: Domain of un 25.0 50 0.0011 24.0 1.7 20 60-79 23-42 (86)
16 PRK10523 lipoprotein involved 23.0 1E+02 0.0022 26.7 3.4 11 23-33 54-64 (234)
17 COG5033 TFG3 Transcription ini 22.6 80 0.0017 27.1 2.7 64 57-124 36-101 (225)
18 PF09475 Dot_icm_IcmQ: Dot/Icm 20.9 33 0.00071 28.4 0.0 63 19-82 95-158 (179)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=4e-35 Score=240.67 Aligned_cols=148 Identities=29% Similarity=0.562 Sum_probs=89.6
Q ss_pred eeecCCccCCCCeEEEEEEEeeEEcCCCEEEEcCCCC------C-CCc--cCceEEECCCCCeeEEEEeccccccceeEE
Q 047297 16 PVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------S-PLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQV 86 (195)
Q Consensus 16 ~vv~~~~c~~~~~~LtV~~K~ls~~~~~ftV~D~~G~------g-~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~v 86 (195)
.||+++||+++|++|+||||++++++++|+|+|++|+ + +++ ++++.|+|++|+||++|++|.++++++|++
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i 81 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI 81 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence 4799999999999999999999999999999999999 6 655 999999999999999999999999999999
Q ss_pred EeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCC-----CCCcccEEEEcCCCCCCCCCeeEEEeCCCCcEEEEe---
Q 047297 87 FRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNT-----RKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQC--- 158 (195)
Q Consensus 87 y~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~-----~~~~~d~~v~G~~~~~~~~~~~~I~~~~~g~~VAei--- 158 (195)
|++++.+.++++|++||++. +..++++.+|+.... ..+.++|+|+|+|+ +++|+|++.+ |++||||
T Consensus 82 ~~~~~~~~~~~i~tvkk~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~----~~~~~I~~~~-g~~VA~i~rk 155 (187)
T PF04525_consen 82 YRGGGSEGKKPIFTVKKKSM-LQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFW----DRSFTIYDSG-GRVVAEISRK 155 (187)
T ss_dssp EETT---GGGEEEEEE-----------EEEEET--T----------SEEEES-TT----TT--EEEECC---EEEEEEE-
T ss_pred EECCCCccCceEEEEEEecc-cCCCcceeEEEecccceeecCCCCceEEEEEEec----CcEEEEEEcC-CCEEEEEecc
Confidence 99998777899999999976 788999999998543 35788999999999 9999999744 8999999
Q ss_pred -----------------ch----HHHHHHHHH
Q 047297 159 -----------------IP----TLIVALILI 169 (195)
Q Consensus 159 -----------------~P----afi~aLvvi 169 (195)
+| |||||||||
T Consensus 156 ~~~k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 156 YSSKKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp ---------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred cceeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 33 999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.9e-19 Score=142.33 Aligned_cols=126 Identities=13% Similarity=0.273 Sum_probs=110.1
Q ss_pred eEEEEEEEeeEEcCCCEEEEcCCCC------CCCc--cCceEEECCCCCeeEEEEeccccccceeEEEeCCCCCCceeEE
Q 047297 28 IDLAIVRKVTVLSSGNIDVKDTNDV------SPLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIF 99 (195)
Q Consensus 28 ~~LtV~~K~ls~~~~~ftV~D~~G~------g~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~g~~~~~~~~lF 99 (195)
.+|.|+||+.++++ +|.|||..|+ |+.+ ++++.+.|++|.+|.+|++|.+++.+++++-.++. -+|
T Consensus 6 ~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g-----~~~ 79 (159)
T COG4894 6 ITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG-----TVC 79 (159)
T ss_pred HhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC-----CEE
Confidence 46889999988877 9999999999 5655 99999999999999999999999999999988764 389
Q ss_pred EEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCCCCCeeEEEeCCCCcEEEEe---------------ch----
Q 047297 100 SAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQC---------------IP---- 160 (195)
Q Consensus 100 tVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~~~~~~~I~~~~~g~~VAei---------------~P---- 160 (195)
.|+|+.. ++|+++++ ...+|+++||+| +.+|++.+| ++++|+| .|
T Consensus 80 ~vrKK~t--f~Rdk~e~--------d~~~~eihGNi~----d~efkl~dg--~~~~aeVsKkwf~~rdTY~l~vapde~a 143 (159)
T COG4894 80 EVRKKVT--FSRDKFEI--------DGLNWEIHGNIW----DDEFKLTDG--ENVRAEVSKKWFSWRDTYHLQVAPDEDA 143 (159)
T ss_pred EEEEEEE--EEeeeEEE--------cCCCeEEeccee----ceEEEEecC--CceehhheeeeEeccceEEEEEcCchhh
Confidence 9998876 44888888 335599999999 999999999 5699999 34
Q ss_pred HHHHHHHHHhchhcc
Q 047297 161 TLIVALILILDEINH 175 (195)
Q Consensus 161 afi~aLvvilD~i~~ 175 (195)
++|++++|+||.+.+
T Consensus 144 ~lii~i~VaLD~v~~ 158 (159)
T COG4894 144 LLIIAIAVALDMVLY 158 (159)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999864
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=98.83 E-value=3.9e-07 Score=76.16 Aligned_cols=137 Identities=17% Similarity=0.143 Sum_probs=97.0
Q ss_pred EEEEEEEeeEE-------cCCCEEEEcCCCC--------C----CCc-----cCceEEECCCCCeeEEEEecc-cc----
Q 047297 29 DLAIVRKVTVL-------SSGNIDVKDTNDV--------S----PLM-----ERRRVLLGGVGNRIVTLRLNT-IT---- 79 (195)
Q Consensus 29 ~LtV~~K~ls~-------~~~~ftV~D~~G~--------g----~~~-----~~~~~L~D~~G~~L~tir~K~-ls---- 79 (195)
.+.|+|+.-.+ ..+.|.|+|.+|+ . +.. .-+..++|..|+++++|+|.. +.
T Consensus 23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~ 102 (221)
T PF03803_consen 23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP 102 (221)
T ss_pred EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence 67777775432 2479999999999 1 211 335688999999999999853 11
Q ss_pred -ccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCC--CCCeeEEEeCCCCcEEE
Q 047297 80 -QHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLS--EPPSCTIYAGESSTIVD 156 (195)
Q Consensus 80 -~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~--~~~~~~I~~~~~g~~VA 156 (195)
...+.+++.. ..+++.+|+++.. .++++++|+-+++ ..-++|+|...+.+ .++.|.|++.+ |..||
T Consensus 103 ~~~~~~~V~~p----~g~~iG~I~q~~~--~~~~~f~I~d~~~----~~~~~I~gp~~~~~~~~~~~F~I~~~~-~~~vg 171 (221)
T PF03803_consen 103 CCLQEMEVESP----PGNLIGSIRQPFS--CCRPNFDIFDANG----NPIFTIKGPCCCCSCCCDWEFEIKDPN-GQEVG 171 (221)
T ss_pred ccceeEEEecC----CCcEEEEEEEcCc--ccceEEEEEECCC----ceEEEEeCCcceeccccceeeeeeccc-CcEEE
Confidence 1244555443 3479999998754 5688999986543 34588888733110 17889999966 78999
Q ss_pred Ee--------------------------ch---HHHHHHHHHhchhccc
Q 047297 157 QC--------------------------IP---TLIVALILILDEINHA 176 (195)
Q Consensus 157 ei--------------------------~P---afi~aLvvilD~i~~~ 176 (195)
+| ++ |+++|.++.+|.++-+
T Consensus 172 ~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 172 SITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred EEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 99 22 9999999999998755
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00025 Score=56.77 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCCeEEEEEEEeeEEcCCCEEEEcCCCCC------CCc--cCceEEECCCCCeeEEEEeccccccceeEEEe------C
Q 047297 24 CPHPIDLAIVRKVTVLSSGNIDVKDTNDVS------PLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFR------G 89 (195)
Q Consensus 24 ~~~~~~LtV~~K~ls~~~~~ftV~D~~G~g------~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~------g 89 (195)
...++++.|.-+.|++.+ .||++|+.|.- ++. ..+..+-|.+|+ ++.+|||..-.+++|++-- |
T Consensus 26 ~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~~~eihG 103 (159)
T COG4894 26 RDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGLNWEIHG 103 (159)
T ss_pred CCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCCCeEEec
Confidence 356789999999899887 79999999992 333 899999999999 8888888755578887621 1
Q ss_pred C-------CCCCceeEEEEEecccccCCCCeEEEEEcCC
Q 047297 90 E-------STERRHLIFSAKISSGWFSRTTKLDVFLANN 121 (195)
Q Consensus 90 ~-------~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~ 121 (195)
+ =+++++..++|+|+. +..++.|.|.+++.
T Consensus 104 Ni~d~efkl~dg~~~~aeVsKkw--f~~rdTY~l~vapd 140 (159)
T COG4894 104 NIWDDEFKLTDGENVRAEVSKKW--FSWRDTYHLQVAPD 140 (159)
T ss_pred ceeceEEEEecCCceehhheeee--EeccceEEEEEcCc
Confidence 1 012456888898773 67888998888654
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.09 E-value=0.0026 Score=52.03 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=45.2
Q ss_pred cCceEEECCCCCeeEEEEe-ccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC
Q 047297 57 ERRRVLLGGVGNRIVTLRL-NTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS 134 (195)
Q Consensus 57 ~~~~~L~D~~G~~L~tir~-K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~ 134 (195)
++.+.+.|.+|++++++.. +.+++.++..++-.+ .++|++++++. +.++++++++.++....+.+-++|+-.
T Consensus 27 ~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~----G~~L~~i~~k~--~~l~~~w~i~~~~~~~~~~~i~tvkk~ 99 (187)
T PF04525_consen 27 GDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDAS----GNPLFTIRRKL--FSLRPTWEIYRGGGSEGKKPIFTVKKK 99 (187)
T ss_dssp ---EEEEETTS-EEEEEE--SCTTBTTEEEEE-TT----S-EEEEEE----------EEEEEETT---GGGEEEEEE--
T ss_pred CCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCC----CCEEEEEEeee--cccceEEEEEECCCCccCceEEEEEEe
Confidence 7889999999999999999 899999999887754 36999999864 478899999998764334556888766
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=95.55 E-value=0.87 Score=40.47 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCC--------C----CCc-----cCceEEECCCCCeeEEEEeccccccc-eeEEEeCC---CCCCceeEE
Q 047297 41 SGNIDVKDTNDV--------S----PLM-----ERRRVLLGGVGNRIVTLRLNTITQHN-RWQVFRGE---STERRHLIF 99 (195)
Q Consensus 41 ~~~ftV~D~~G~--------g----~~~-----~~~~~L~D~~G~~L~tir~K~ls~~~-~W~vy~g~---~~~~~~~lF 99 (195)
.+.|.|.|.+|+ . +.+ .-...++|.-|+++++++|..--... .+..=..+ ..-..-.+-
T Consensus 98 ~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~lG 177 (292)
T KOG0621|consen 98 ANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPPMGLLG 177 (292)
T ss_pred CcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCCCceEE
Confidence 479999999998 1 111 33568999999999999998633221 11000000 000112344
Q ss_pred EEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC-CCCC--CCCCeeEEEeCCCCcEEEEe------------------
Q 047297 100 SAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS-SSRL--SEPPSCTIYAGESSTIVDQC------------------ 158 (195)
Q Consensus 100 tVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~-~~~~--~~~~~~~I~~~~~g~~VAei------------------ 158 (195)
+|.... ....++++|.-. +...-|.|+|. .+.. -++..+.|...+.+.+|++|
T Consensus 178 ~v~q~~--~~~~~~f~i~~~----~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f 251 (292)
T KOG0621|consen 178 KVLQTW--GCVNPNFHLWDR----DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTF 251 (292)
T ss_pred EEEEee--ccccceEEEEcc----cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheecccee
Confidence 443332 233455555321 12223666665 1100 00444455444448889999
Q ss_pred ---ch--------HHHHHHHHHhchhcccCCC
Q 047297 159 ---IP--------TLIVALILILDEINHARSS 179 (195)
Q Consensus 159 ---~P--------afi~aLvvilD~i~~~~~~ 179 (195)
.| |+++|-++-+|.+.-+.+.
T Consensus 252 ~v~FPldLdvk~kavllga~flID~~~Fe~~~ 283 (292)
T KOG0621|consen 252 VVHFPLDLDVKLKALLLGSTFLIDYMSFESRG 283 (292)
T ss_pred eEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence 33 9999999999999888874
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=91.37 E-value=4.7 Score=33.38 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=58.4
Q ss_pred cCceEEECCCCCeeEEEEecc-------ccccceeEEEeCCCCCCceeEEEEEecccccC----CCCeEEEEEcCCCCCC
Q 047297 57 ERRRVLLGGVGNRIVTLRLNT-------ITQHNRWQVFRGESTERRHLIFSAKISSGWFS----RTTKLDVFLANNTRKD 125 (195)
Q Consensus 57 ~~~~~L~D~~G~~L~tir~K~-------ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~----~k~~~~Vfl~~~~~~~ 125 (195)
.++..++|.+|++|+...++. +.-++.++...-+. .++++++++|+..|.. ...+++|+-+++ +
T Consensus 42 ~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~--~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g---~ 116 (221)
T PF03803_consen 42 PNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDN--YGREVLTIERPFKCCSCCPCCLQEMEVESPPG---N 116 (221)
T ss_pred CceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEec--CCCEEEEEEcCCcceecccccceeEEEecCCC---c
Confidence 788999999999999998773 22222333222121 2468999999876322 134566643332 2
Q ss_pred cccEEE-EcCCCCCCCCCeeEEEeCCCCcEEEEe-ch
Q 047297 126 ACDFRV-VKSSSRLSEPPSCTIYAGESSTIVDQC-IP 160 (195)
Q Consensus 126 ~~d~~v-~G~~~~~~~~~~~~I~~~~~g~~VAei-~P 160 (195)
...+-. .-+++ ...|.|++.+ ++.++.| .|
T Consensus 117 ~iG~I~q~~~~~----~~~f~I~d~~-~~~~~~I~gp 148 (221)
T PF03803_consen 117 LIGSIRQPFSCC----RPNFDIFDAN-GNPIFTIKGP 148 (221)
T ss_pred EEEEEEEcCccc----ceEEEEEECC-CceEEEEeCC
Confidence 222111 23556 8899999987 7888999 56
No 8
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=61.56 E-value=40 Score=24.79 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=24.3
Q ss_pred cCceEEECCCCCeeEEEEeccccccceeEEEeCC
Q 047297 57 ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGE 90 (195)
Q Consensus 57 ~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~g~ 90 (195)
++.+.|+|.+|+.|..+.+.. -++|++...+
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~ 91 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPD 91 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCC
Confidence 889999999999999998874 3678887764
No 9
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=57.58 E-value=70 Score=27.51 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=43.8
Q ss_pred CCeeEEEEecc--c--cccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCC---CCCCcccEEEEcCCCCCC
Q 047297 67 GNRIVTLRLNT--I--TQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANN---TRKDACDFRVVKSSSRLS 139 (195)
Q Consensus 67 G~~L~tir~K~--l--s~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~---~~~~~~d~~v~G~~~~~~ 139 (195)
|-.=+.|+|.+ + .+.+.+..|..++ .++.|..+||... ...+.+.|.+... ...+..-=+|+.|++
T Consensus 6 ~~vqC~I~R~k~g~~~~lyp~y~l~l~~~--~~kfLLaArK~~~--s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~--- 78 (246)
T PF01167_consen 6 GPVQCFIRRDKSGLTRGLYPGYYLYLEGE--NGKFLLAARKRKR--SKTSNYIISLDPDDLSRSSNNYVGKLRSNFL--- 78 (246)
T ss_dssp -EEEEEEEEESTTCCCT---EEEEEEEST--TSEEEEEEEEECS--SSSEEEEEESSHHHHCTT---ESEEEEE-TT---
T ss_pred cEEEEEEEEECCCCCcccCcEeEeccccC--CCcEEEeeeeccc--CCCcceEEecCCCccccCCCceeeeeccccc---
Confidence 33457786654 3 2556777776532 3478888887643 3356777766442 122344457899999
Q ss_pred CCCeeEEEeC
Q 047297 140 EPPSCTIYAG 149 (195)
Q Consensus 140 ~~~~~~I~~~ 149 (195)
+.+|+|||.
T Consensus 79 -GT~F~iyD~ 87 (246)
T PF01167_consen 79 -GTEFTIYDN 87 (246)
T ss_dssp -SSEEEEEES
T ss_pred -eeEEEEECC
Confidence 999999986
No 10
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=40.22 E-value=38 Score=24.29 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=5.4
Q ss_pred cCceEEECCCCCee
Q 047297 57 ERRRVLLGGVGNRI 70 (195)
Q Consensus 57 ~~~~~L~D~~G~~L 70 (195)
.+.+.++|..|+++
T Consensus 70 ~~~L~~Ld~~G~~i 83 (87)
T PF04170_consen 70 ENSLEMLDQDGNPI 83 (87)
T ss_dssp TTEEEEE-TTS-B-
T ss_pred CCEEEEECCCCCcC
Confidence 44445555555544
No 11
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=34.16 E-value=96 Score=24.95 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred CEEEEcCCCC--C----------CCc--cCceEEECCCCCeeEEEEeccc--cccceeEEEeCC
Q 047297 43 NIDVKDTNDV--S----------PLM--ERRRVLLGGVGNRIVTLRLNTI--TQHNRWQVFRGE 90 (195)
Q Consensus 43 ~ftV~D~~G~--g----------~~~--~~~~~L~D~~G~~L~tir~K~l--s~~~~W~vy~g~ 90 (195)
=++|+|+||+ | ++. .-.++++|.+|+.|+ .+|... .+.+.|..+-|+
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL-~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILV-QRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEE-EEeCCCCCCCCCcccccCCC
Confidence 3789999999 2 122 345677899888776 444322 234567766554
No 12
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=33.51 E-value=1.6e+02 Score=21.69 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=33.7
Q ss_pred CCCCeEEEEEEEeeEEcCCCEEEEcCCCC---CCCc---cCceEEECCCCCeeEEEEec---cccccceeEEEe
Q 047297 24 CPHPIDLAIVRKVTVLSSGNIDVKDTNDV---SPLM---ERRRVLLGGVGNRIVTLRLN---TITQHNRWQVFR 88 (195)
Q Consensus 24 ~~~~~~LtV~~K~ls~~~~~ftV~D~~G~---g~~~---~~~~~L~D~~G~~L~tir~K---~ls~~~~W~vy~ 88 (195)
.....+-+|.++ .+..++=|=.+|+ .++- +.-.+|+|.+|.--++=+.. .-..-++|.+|+
T Consensus 35 ~~~~pevti~~~----~~~~ieEyRv~G~l~~IkV~P~~G~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~ 104 (105)
T PF11191_consen 35 EEQEPEVTIIED----GGSTIEEYRVNGQLYMIKVQPKAGPPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFS 104 (105)
T ss_pred CCCCCCEEEEec----CCcEEEEEEECCeEeeEEEEeCCCCCEEEECCCCCCcccccccccCCCCCCcEEEEee
Confidence 333345555553 1223333445777 3443 67889999999755554444 112357888774
No 13
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=26.65 E-value=3.2e+02 Score=21.53 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=31.3
Q ss_pred CEEEEcCCCCCCC--ccCceEEECCCCCeeEEEEeccccccce
Q 047297 43 NIDVKDTNDVSPL--MERRRVLLGGVGNRIVTLRLNTITQHNR 83 (195)
Q Consensus 43 ~ftV~D~~G~g~~--~~~~~~L~D~~G~~L~tir~K~ls~~~~ 83 (195)
.|.||+.+|-.-. |=-...|+|.+|+.+++-..+.|+-.+.
T Consensus 32 ~f~vyr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L~~lP~ 74 (133)
T PF07680_consen 32 SFHVYRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKLSSLPK 74 (133)
T ss_pred EEEEEEcCCCccCCceeeEEEEECCCCCEEEEeCHHHhhhCCh
Confidence 6899999998321 2345889999999999999888764443
No 14
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=25.53 E-value=1.2e+02 Score=23.61 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=28.4
Q ss_pred EEEcCCCC--CC-----------Cc--cCceEEECCCCCeeEEEEecc-ccccceeEEE
Q 047297 45 DVKDTNDV--SP-----------LM--ERRRVLLGGVGNRIVTLRLNT-ITQHNRWQVF 87 (195)
Q Consensus 45 tV~D~~G~--g~-----------~~--~~~~~L~D~~G~~L~tir~K~-ls~~~~W~vy 87 (195)
.|+|++|+ |. +. .=-.+|+|.+|+.|+.-|... .++.+.|..-
T Consensus 2 ~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 2 ILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred EEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 58999998 21 11 224688999999888644332 4567889853
No 15
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=25.03 E-value=50 Score=24.04 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=18.7
Q ss_pred eEEECCCCCeeEEEEecccc
Q 047297 60 RVLLGGVGNRIVTLRLNTIT 79 (195)
Q Consensus 60 ~~L~D~~G~~L~tir~K~ls 79 (195)
..|.|++|+-=++||||.+.
T Consensus 23 v~l~DpTG~i~~tiH~~v~~ 42 (86)
T PF15072_consen 23 VVLKDPTGEIRGTIHRKVLE 42 (86)
T ss_pred EEEECCCCcEEEEEeHHHHh
Confidence 79999999999999999875
No 16
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=23.04 E-value=1e+02 Score=26.66 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.6
Q ss_pred cCCCCeEEEEE
Q 047297 23 CCPHPIDLAIV 33 (195)
Q Consensus 23 c~~~~~~LtV~ 33 (195)
|....++|++.
T Consensus 54 C~GI~ttLtL~ 64 (234)
T PRK10523 54 CEGIETSLFLE 64 (234)
T ss_pred CCCceEEEEEc
Confidence 55556666664
No 17
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=22.63 E-value=80 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=41.6
Q ss_pred cCceEEECCC-CCeeEEEEecc-ccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCC
Q 047297 57 ERRRVLLGGV-GNRIVTLRLNT-ITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRK 124 (195)
Q Consensus 57 ~~~~~L~D~~-G~~L~tir~K~-ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~ 124 (195)
+-.++++|+. +..+.++-+|. +.+|++ |..-.-.-.+|=|.|+-..| =-|...+.||+.++..+
T Consensus 36 h~w~v~v~~~g~E~~~~iv~KVifkLH~T---f~NP~Rti~~pPFeI~EtGW-GEF~i~I~iff~~~age 101 (225)
T COG5033 36 HIWLVFVRAPGKEDIATIVKKVIFKLHPT---FSNPTRTIESPPFEIKETGW-GEFDIQIKIFFAEKAGE 101 (225)
T ss_pred EEEEEEEeCCCCcchhhhhheeeEEeccc---cCCCcccccCCCcEEEeccc-ccceEEEEEEEecCCCc
Confidence 5556666665 55667887776 788888 44321112357789987665 44667889999876543
No 18
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=20.85 E-value=33 Score=28.39 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred cCCccCCCCeEEEEEEEeeEEcCCCEEEEcCCCCCCCc-cCceEEECCCCCeeEEEEeccccccc
Q 047297 19 SPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLM-ERRRVLLGGVGNRIVTLRLNTITQHN 82 (195)
Q Consensus 19 ~~~~c~~~~~~LtV~~K~ls~~~~~ftV~D~~G~g~~~-~~~~~L~D~~G~~L~tir~K~ls~~~ 82 (195)
.|-|-..+.+.-.||.|---++. .|.+.=.+...=+. ...+..+|.-|+||+|++-|.+.+-+
T Consensus 95 RPIY~nE~dvk~~IksKenk~NE-AYVaiyInq~dIl~~~~dk~~~Dk~GkpLltLkdrai~leN 158 (179)
T PF09475_consen 95 RPIYANEEDVKAAIKSKENKLNE-AYVAIYINQSDILSLSPDKIPTDKLGKPLLTLKDRAINLEN 158 (179)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCcCCHHHHHHHHHhhhcccce-eEEEEEEchHhcccCCcccccccccCCcccccchhhcchhh
Confidence 45555555566666665544444 44443333332122 77788999999999999999876543
Done!