Query 047297
Match_columns 195
No_of_seqs 108 out of 341
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 5E-38 1.7E-42 261.8 18.1 172 3-179 8-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.7 0.00016 5.3E-09 59.4 8.9 83 57-149 51-136 (217)
3 3c5n_A Tubby-related protein 1 44.8 1.3E+02 0.0044 24.7 11.2 75 67-149 13-94 (246)
4 2fim_A Tubby related protein 1 43.1 1.5E+02 0.0051 24.9 12.0 76 66-149 36-118 (276)
5 2v2f_A Penicillin binding prot 31.3 25 0.00087 18.5 1.7 14 60-73 7-20 (26)
6 1g9p_A Omega-atracotoxin-HV2A; 30.8 19 0.00065 22.1 1.2 15 181-195 31-45 (45)
7 1hzt_A Isopentenyl diphosphate 17.8 1.4E+02 0.0048 22.2 4.2 44 43-86 5-64 (190)
8 2fkb_A Putative nudix hydrolas 17.6 2E+02 0.0068 20.9 5.0 45 41-86 9-69 (180)
9 2z4i_A Copper homeostasis prot 17.4 1.1E+02 0.0038 25.1 3.7 39 38-76 72-118 (233)
10 2ks1_B Epidermal growth factor 13.6 54 0.0019 20.1 0.6 15 180-194 7-21 (44)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=5e-38 Score=261.84 Aligned_cols=172 Identities=45% Similarity=0.776 Sum_probs=126.1
Q ss_pred CCCCCCCC-----CCCceeeecCCccCCCCeEEEEEEEeeEEcCCCEEEEcCCCC------CCCc--cCceEEECCCCCe
Q 047297 3 QQPSSGGA-----VANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPLM--ERRRVLLGGVGNR 69 (195)
Q Consensus 3 ~~~~~~~~-----~~~~~~vv~~~~c~~~~~~LtV~~K~ls~~~~~ftV~D~~G~------g~~~--~~~~~L~D~~G~~ 69 (195)
++|++++| +.+|++||+++||++++++|+||||++++++++|+|+|++|+ ++.+ ++++.|+|++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~ 87 (217)
T 1zxu_A 8 AYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTP 87 (217)
T ss_dssp ----------------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCE
T ss_pred eCCCCCCCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCE
Confidence 46777776 334788999999999999999999999999999999999999 3433 8999999999999
Q ss_pred eEEEEeccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCCCCCeeEEEeC
Q 047297 70 IVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAG 149 (195)
Q Consensus 70 L~tir~K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~~~~~~~I~~~ 149 (195)
|++|+||.++++++|++|++++.+.++++|+|||++. +.++++++|+++++..++.++|+|+|+|+ +++|+|+++
T Consensus 88 l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~-~~~~~~~~V~~~~~~~~~~~~~~I~G~~~----~~~f~I~~~ 162 (217)
T 1zxu_A 88 VVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSM-LQLKTKLDVFLGHNKDEKRCDFRVKGSWL----ERSCVVYAG 162 (217)
T ss_dssp EEEEEC------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTT----TTCCEEEET
T ss_pred EEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEecc-ccCCCeEEEEECCCCCCCceEEEEEEeEe----CCEEEEEEC
Confidence 9999999999999999999987666689999999864 45789999999887666678999999999 999999998
Q ss_pred CCCcEEEEe--------------------ch----HHHHHHHHHhchhcccCCC
Q 047297 150 ESSTIVDQC--------------------IP----TLIVALILILDEINHARSS 179 (195)
Q Consensus 150 ~~g~~VAei--------------------~P----afi~aLvvilD~i~~~~~~ 179 (195)
++|.+||+| .| +|+|||+++||+|++++++
T Consensus 163 ~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 163 ESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp TTCCEEEEEEEC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred CCCEEEEEEEeeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence 656899999 23 9999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.70 E-value=0.00016 Score=59.38 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=57.4
Q ss_pred cCceEEECCCCCeeEEEEeccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC--
Q 047297 57 ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS-- 134 (195)
Q Consensus 57 ~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~-- 134 (195)
.++..++|.+|+.++++..+.+++..+..+|... .+++++++|+.. .+..+++|+.+.......+-++|+-+
T Consensus 51 ~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~----G~~l~~i~rk~~--~~~~~~~v~~~~~~~~~~~i~~vrk~~~ 124 (217)
T 1zxu_A 51 DGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGS----GTPVVTLREKMV--SMHDRWQVFRGGSTDQRDLLYTVKRSSM 124 (217)
T ss_dssp CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTT----SCEEEEEEC--------CEEEEEETTCCCGGGEEEEEEC---
T ss_pred CCCEEEEeCCCCEEEEEEccccCCCCEEEEECCC----CCEEEEEEcccc--ccCcEEEEEcCCCCCCCcEEEEEEEecc
Confidence 4589999999999999999988888888887654 469999998754 56889999986542212346777654
Q ss_pred C-CCCCCCCeeEEEeC
Q 047297 135 S-SRLSEPPSCTIYAG 149 (195)
Q Consensus 135 ~-~~~~~~~~~~I~~~ 149 (195)
+ + +..|.|...
T Consensus 125 ~~~----~~~~~V~~~ 136 (217)
T 1zxu_A 125 LQL----KTKLDVFLG 136 (217)
T ss_dssp --------CCEEEEET
T ss_pred ccC----CCeEEEEEC
Confidence 3 3 567888865
No 3
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=44.82 E-value=1.3e+02 Score=24.74 Aligned_cols=75 Identities=7% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCeeEEEEecc--c--cccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCC---CCCcccEEEEcCCCCCC
Q 047297 67 GNRIVTLRLNT--I--TQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNT---RKDACDFRVVKSSSRLS 139 (195)
Q Consensus 67 G~~L~tir~K~--l--s~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~---~~~~~d~~v~G~~~~~~ 139 (195)
+..=+.|+|.+ + .+.+++..|..+ +.++.+..+||... ...+.+.|.+.... ..+..-=+++.|++
T Consensus 13 ~~~qC~I~R~k~g~~~~~yp~y~l~~~~--~~~~fLlaark~~~--~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~--- 85 (246)
T 3c5n_A 13 RTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAGRKRKR--SKTANYLISIDPTNLSRGGENFIGKLRSNLL--- 85 (246)
T ss_dssp CEEEEEEEECC------CCCEEEEEESS--SSCCEEEEEEECTT--CSSCEEEEESCTTC------CEEEEEEECSS---
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEeC--CCcEEEEeeeeccC--CCCceEEEEeCccccccCCceEEEEEEEccC---
Confidence 33446676643 2 245677777754 23456777776533 33456777664321 12333456788999
Q ss_pred CCCeeEEEeC
Q 047297 140 EPPSCTIYAG 149 (195)
Q Consensus 140 ~~~~~~I~~~ 149 (195)
+..|+||+.
T Consensus 86 -Gt~F~iyD~ 94 (246)
T 3c5n_A 86 -GNRFTVFDN 94 (246)
T ss_dssp -SSEEEEECS
T ss_pred -CCEEEEECC
Confidence 999999986
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=43.07 E-value=1.5e+02 Score=24.88 Aligned_cols=76 Identities=7% Similarity=0.061 Sum_probs=46.3
Q ss_pred CCCeeEEEEecc--c--cccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCC---CCCcccEEEEcCCCCC
Q 047297 66 VGNRIVTLRLNT--I--TQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNT---RKDACDFRVVKSSSRL 138 (195)
Q Consensus 66 ~G~~L~tir~K~--l--s~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~---~~~~~d~~v~G~~~~~ 138 (195)
.+..-+.|+|.+ + .+.+++..|..+ +.++.+...||... ...+.+-|.+.... ..+..-=+++.|++
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLaarK~k~--~~ts~YiIS~d~~dlsr~s~~yvGKLrSNfl-- 109 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAGRKRKR--SKTANYLISIDPTNLSRGGENFIGKLRSNLL-- 109 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECS--SSCEEEEEEEECTT--CSSCEEEEESCTTC------CEEEEEEECSS--
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEEEEeccC--CCCceEEEEecchhcccCCceEEEEEEEccC--
Confidence 355667786543 2 345788888753 24567777776543 34456777664321 12333456788999
Q ss_pred CCCCeeEEEeC
Q 047297 139 SEPPSCTIYAG 149 (195)
Q Consensus 139 ~~~~~~~I~~~ 149 (195)
+..|+||+.
T Consensus 110 --GtkF~iyD~ 118 (276)
T 2fim_A 110 --GNRFTVFDN 118 (276)
T ss_dssp --SSEEEEECS
T ss_pred --CCEEEEECC
Confidence 999999986
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=31.30 E-value=25 Score=18.51 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=10.7
Q ss_pred eEEECCCCCeeEEE
Q 047297 60 RVLLGGVGNRIVTL 73 (195)
Q Consensus 60 ~~L~D~~G~~L~ti 73 (195)
-.|+|.+|+.+.++
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 46788888888776
No 6
>1g9p_A Omega-atracotoxin-HV2A; cystine knot; NMR {Hadronyche versuta} SCOP: g.3.6.2 PDB: 1hp3_A
Probab=30.82 E-value=19 Score=22.10 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=11.7
Q ss_pred ccccccccccccccC
Q 047297 181 SSIGGVGGGVIGGFI 195 (195)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (195)
+|.||.-||++||.+
T Consensus 31 ps~~GlvGGlLGgiL 45 (45)
T 1g9p_A 31 SSGPGLVGGILGGIL 45 (45)
T ss_dssp CCCSSCSSCSSCCCC
T ss_pred cCCcchhhhhhcccC
Confidence 577888888888753
No 7
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=17.79 E-value=1.4e+02 Score=22.24 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=17.9
Q ss_pred CEEEEcCCCC--CCCc-------------cCceEEECCCCCeeEEEEecc-ccccceeEE
Q 047297 43 NIDVKDTNDV--SPLM-------------ERRRVLLGGVGNRIVTLRLNT-ITQHNRWQV 86 (195)
Q Consensus 43 ~ftV~D~~G~--g~~~-------------~~~~~L~D~~G~~L~tir~K~-ls~~~~W~v 86 (195)
-++|+|.+|+ +... .-..++.|.+|+.|+.-|... -.+.+.|..
T Consensus 5 ~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp --------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred EEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 5778888888 2111 113467888887766544322 335688986
No 8
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=17.55 E-value=2e+02 Score=20.93 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCC--C----------CCc--cCceEEECCCCCeeEEEEeccc--cccceeEE
Q 047297 41 SGNIDVKDTNDV--S----------PLM--ERRRVLLGGVGNRIVTLRLNTI--TQHNRWQV 86 (195)
Q Consensus 41 ~~~ftV~D~~G~--g----------~~~--~~~~~L~D~~G~~L~tir~K~l--s~~~~W~v 86 (195)
..-++|+|.+|+ + ++. .-..++.|.+|+.|+. +|..- .+.+.|..
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~-~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQ-RRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEE-EECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEE-ECCCCCccCCCcEEe
Confidence 336899999988 1 111 2235677888987774 44321 23567875
No 9
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=17.40 E-value=1.1e+02 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=23.2
Q ss_pred EEcCCCEEEEcCCCCCCCc---cCceEEECCCCCee-----EEEEec
Q 047297 38 VLSSGNIDVKDTNDVSPLM---ERRRVLLGGVGNRI-----VTLRLN 76 (195)
Q Consensus 38 s~~~~~ftV~D~~G~g~~~---~~~~~L~D~~G~~L-----~tir~K 76 (195)
.+.++.++..+++|+-..+ .+.+.++|.+|+++ .+|++.
T Consensus 72 ~~~g~~i~L~~~~g~~~yf~v~~d~L~mLD~~G~~i~s~LnY~L~kv 118 (233)
T 2z4i_A 72 ARTADKLVLTDSKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEAA 118 (233)
T ss_dssp ECCSSEEEEEETTSCEEEEEEETTEEEEECTTSCBCEEEECCEEEEC
T ss_pred EecCCEEEEeeCCCCeEEEEEcCCEEEEECCCCCcCCCCCCcEEEEc
Confidence 3334444455555543333 56788999999888 455544
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.60 E-value=54 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=11.1
Q ss_pred Ccccccccccccccc
Q 047297 180 SSSIGGVGGGVIGGF 194 (195)
Q Consensus 180 ~~~~~~~~~~~~~~~ 194 (195)
++..+.+.+||+||.
T Consensus 7 ~s~~~~IA~gVVgGv 21 (44)
T 2ks1_B 7 GPKIPSIATGMVGAL 21 (44)
T ss_dssp CSCSSSSTHHHHHHH
T ss_pred CCCcceEEeehhHHH
Confidence 467777888888863
Done!