BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047298
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 116 LQSQPIVVDCEEEEEEEERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPL 173
+QS P+V+ E+ ++ +C +CL SV +M C H FH CI W N+ SCPL
Sbjct: 60 VQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWL-NKTNSCPL 118
Query: 174 CRFDMAT 180
CR ++ T
Sbjct: 119 CRLELPT 125
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 135 CAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183
CA+CL SV+ + C H FH +C+ W DN +CP+CR+ + V+
Sbjct: 260 CAVCLERMDDSVLAILCNHSFHARCLEQWADN---TCPVCRYVQSPEVV 305
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 130 EEEERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
+ E +C +CL + I+M C H FH CI W N SCPLCR+++ T
Sbjct: 71 QAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTN-SCPLCRYELPT 122
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 129 EEEEERCAICL-----GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
+ E +CA+C+ GS V QM C H FH+ C+ W + N SCP+CRF++ T
Sbjct: 210 KSEMNQCAVCMDEFEDGS---DVKQMPCKHVFHQDCLLPWLELHN-SCPVCRFELPT 262
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 116 LQSQPIVVDCEEEEEEEERCAICLG----SGTGSVIQMDCLHQFHEKCIACWFDNRNYSC 171
++S P+ +E ++ CA+CL S TG V+ +C H FH CI WF + + +C
Sbjct: 100 IKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLP-NCQHTFHVDCIDMWFHSHS-TC 157
Query: 172 PLCR 175
PLCR
Sbjct: 158 PLCR 161
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 132 EERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
E +C +CL +VI+M C H FH CI W N SCPLCR ++ T
Sbjct: 85 ELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTN-SCPLCRHELPT 134
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 135 CAICLGS-GTGS-VIQMDCLHQFHEKCIACWFDNRNYSCPLCR 175
C +CL TG V ++DC H FH++C+ W + N++CPLCR
Sbjct: 74 CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 116
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 116 LQSQPIVVDCEEEEEEEERC-AICLGSGTGSVI--QM-DCLHQFHEKCIACWFDNRNYSC 171
+QS P ++ E + C AICLG G + Q+ DC H FH KCI W N +C
Sbjct: 127 IQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWL-RLNPTC 185
Query: 172 PLCRFDMATAVIESMFSKPL 191
P+CR T+ + + S PL
Sbjct: 186 PVCR----TSPLPTPLSTPL 201
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIES 185
EE + + C IC ++ C H FH C+ WF R +CP CR D+ A + +
Sbjct: 276 EELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWF-QRQQTCPTCRMDVLRASLPT 334
Query: 186 MFSKP 190
P
Sbjct: 335 QPQTP 339
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 114 KYLQSQPIVVDCEEEEEEEERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSC 171
K ++S P V E+ + +C +CL +V Q+ C H FH CI W N SC
Sbjct: 58 KVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTN-SC 116
Query: 172 PLCRFDMAT 180
PLCR ++ T
Sbjct: 117 PLCRHELPT 125
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 134 RCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
+C +CL +VI+M C H FH CI W N SCPLCR ++ T
Sbjct: 87 KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTN-SCPLCRHELPT 134
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 107 VTKKDVVKYLQSQPIVVDCEEEEEEEERCAICLGSGT--GSVIQMDCLHQFHEKCIACWF 164
+ + + + SQ VV E+ + C IC T S ++ C H FH C+ WF
Sbjct: 264 ILSRRAINAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWF 323
Query: 165 DNRNYSCPLCRFDM 178
R +CP CR D+
Sbjct: 324 -QRQQTCPTCRTDI 336
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 114 KYLQSQPIVVDCEEEEEEEERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSC 171
K ++S P V E+ + +C +CL +V Q+ C H FH CI W N SC
Sbjct: 58 KVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN-SC 116
Query: 172 PLCRFDMAT 180
PLCR ++ T
Sbjct: 117 PLCRHELPT 125
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIES 185
EE + + C IC ++ C H FH C+ WF R +CP CR D+ A + +
Sbjct: 276 EELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWF-QRQQTCPTCRMDVLRASLPT 334
Query: 186 MFSKP 190
P
Sbjct: 335 QPQTP 339
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 130 EEEERCAICL--GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
+ E +C +CL + I+M C H FH CI W N SCPLCR ++ T
Sbjct: 71 QAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTN-SCPLCRHELPT 122
>sp|Q6PCD5|RFWD3_HUMAN E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1
SV=3
Length = 774
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 117 QSQPIVVDCEEEEEEEERCAICL----GSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCP 172
+S+P++ +EEE + C ICL +G + + C H F +CI+ W + CP
Sbjct: 269 KSEPLLPSASMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKCP 328
Query: 173 LCRFDMATAVIESMFSKPL 191
C + I ++++ L
Sbjct: 329 QCNKKARHSDIVVLYARTL 347
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 124 DCEEEEEEEERCAICLGSGT-GSVIQ-MDCLHQFHEKCIACWFDNRNYSCPLCRF 176
+ ++ E+E C++CL T G +++ + CLHQFH CI W + +CP+C+F
Sbjct: 200 ESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQG-TCPVCKF 253
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 107 VTKKDVVKYLQSQPIVVDCEEEEEEEERCAICLGSGT--GSVIQMDCLHQFHEKCIACWF 164
+ + + + SQ VV +E + C IC T S ++ C H FH C+ WF
Sbjct: 264 ILSRRAINAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWF 323
Query: 165 DNRNYSCPLCRFDM 178
R +CP CR D+
Sbjct: 324 -QRQQTCPTCRTDI 336
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
EE + + C IC ++ C H FH C+ WF R +CP CR D+ A
Sbjct: 282 EELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWF-QRQQTCPTCRMDVLRA 336
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 108 TKKDVVKYLQSQP---IVVDCEEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWF 164
T D ++ SQP + E + CAIC T I + C H F E+CI+ WF
Sbjct: 326 TSSDCLRLFLSQPNYGTTATKRQCSEADGMCAICQAEFT-KPIALICQHVFCEECISSWF 384
Query: 165 DNRNYSCPLCR 175
N+ +CPLCR
Sbjct: 385 -NKEKTCPLCR 394
>sp|P87139|YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1
Length = 372
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 135 CAICLGSGTGS--VIQMDCLHQFHEKCIACWFDNRNYSCPLC 174
C ICL S T V+ + C H+FH CIA W + ++CP C
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 151 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 198
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 151 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 198
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
EE + + C IC ++ C H FH C+ WF R +CP CR D+ A
Sbjct: 282 EELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWF-QRQQTCPTCRMDVLRA 336
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 149 MDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
+ C H+FHE+CI W N SCPLCR+++ T
Sbjct: 86 LPCKHEFHEECILLWLKKTN-SCPLCRYELET 116
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 151 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 198
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFD---NRNYSCPLCRFDMATAV 182
EE + ++ CAIC ++ C H FH C+ W D N YSCP CR +
Sbjct: 328 EELRDYDDECAICR-EPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFVGR 386
Query: 183 IES 185
ES
Sbjct: 387 TES 389
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 151 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 198
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 151 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 198
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
+EE C IC+ G +I + C H F +KCI W D R+ +CP+CR M A
Sbjct: 152 DEEECCICM-DGRADLI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 199
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 135 CAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCR 175
C ICL + TG+ + CLH F CI W + R +CPLC+
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRP-TCPLCK 52
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 135 CAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCR 175
C ICL + TG+ + CLH F CI W + R +CPLC+
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRP-TCPLCK 52
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
E+ + + C IC ++ C H FH C+ WF R +CP CR D+ A
Sbjct: 282 EDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWF-QRQQTCPTCRMDVLRA 336
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 109 KKDVVKYLQSQPIVVDCEEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRN 168
++D V ++S P+ E+ E+ + CAIC +VI C H FH C+ W ++
Sbjct: 512 RRDAVNKIKSLPVATQ-EQLEKHNDICAICYQDMKSAVI-TPCSHFFHAGCLKKWLYVQD 569
Query: 169 YSCPLC 174
+CPLC
Sbjct: 570 -TCPLC 574
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 125 CEEEEEEEERCAICLGSGTGS--VIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180
C + C +CL V +++C H FH+KC+ W N++CPLCR + +
Sbjct: 76 CGDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVS 133
>sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus GN=Rfwd3 PE=2
SV=1
Length = 774
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 97 VVVIYRNNVNVTKKDVVKYLQSQPIVVDCEEEEEEEERCAICL----GSGTGSVIQMDCL 152
V+ + +VT D V Q + E+EE E C ICL +G + + C
Sbjct: 250 VIATDQEATSVTGDDAVPKESPQKPNMLSAMEDEEGETCTICLEQWTNAGDHRISALRCG 309
Query: 153 HQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMFSKPL 191
H F +CI+ W + CP C + I ++++ L
Sbjct: 310 HLFGFRCISKWLKGQTRKCPQCNKKAKHSDIVVIYARSL 348
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 109 KKDVVKYLQSQPIVVDCEEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRN 168
++D V ++S PI E+ E+ + CAIC +VI C H FH C+ W +
Sbjct: 512 RRDAVNKIKSLPIATK-EQLEKHNDICAICYQDMKSAVI-TPCSHFFHAGCLKKWLYVQE 569
Query: 169 YSCPLC 174
+CPLC
Sbjct: 570 -TCPLC 574
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 124 DCEEEEEEEERCAICLG--SGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
D EE + +E+C ICL V ++ C+H FH+ C+ W + CP+CR D+ T
Sbjct: 284 DEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICRVDIETQ 342
Query: 182 V 182
+
Sbjct: 343 L 343
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 124 DCEEEEEEEERCAICLG--SGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181
D EE + +E+C ICL V ++ C+H FH+ C+ W + CP+CR D+ T
Sbjct: 283 DEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICRVDIETQ 341
Query: 182 V 182
+
Sbjct: 342 L 342
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 112 VVKYLQSQPIVVDCEEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSC 171
VV ++++ V EE + CAIC S + ++ C H FH C+ W + ++ SC
Sbjct: 318 VVGNMEARFAVATPEELAVNNDDCAICWDS-MQAARKLPCGHLFHNSCLRSWLE-QDTSC 375
Query: 172 PLCRFDMATA 181
P CR + A
Sbjct: 376 PTCRMSLNIA 385
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 112 VVKYLQSQPIVVDCEEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSC 171
VV ++++ V EE + CAIC S + ++ C H FH C+ W + ++ SC
Sbjct: 318 VVGNMEARFAVATPEELAVNNDDCAICWDS-MQAARKLPCGHLFHNSCLRSWLE-QDTSC 375
Query: 172 PLCRFDMATA 181
P CR + A
Sbjct: 376 PTCRMSLNIA 385
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 135 CAICLGS-GTGSVIQ-MDCLHQFHEKCIACWFDNRNYSCPLCRFDM 178
CAICL G ++ + CLH+FH C+ W +++ +CPLC F++
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWL-HQHRTCPLCMFNI 316
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFD---NRNYSCPLCR 175
EE ++ CAIC ++ C H FH C+ W D N YSCP CR
Sbjct: 328 EELRAYDDECAICR-EPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 102 RNNVNVTKKDVVKYLQSQPIVVDCEEEEEEEERCAICLGS--GTGSVIQMDCLHQFHEKC 159
RN +VTKK ++K D E++ + + CAIC+ + T ++ + C H+FH+ C
Sbjct: 272 RNLCSVTKKAIMKIPTKTGKFSD--EKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNC 329
Query: 160 IACWFDNRNYSCPLCRFDM 178
I W +CP+C+ D+
Sbjct: 330 IDPWLIEHR-TCPMCKLDV 347
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 133 ERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182
ERC ICL + + + CLH F CI W +N +CPLC+ + + V
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWI-RQNPTCPLCKVPVESVV 54
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 133 ERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182
ERC ICL + + + CLH F CI W +N +CPLC+ + + V
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWI-RQNPTCPLCKVPVESVV 54
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 133 ERCAICLGSGTGSVI---QMDCLHQFHEKCIACWFDNRNYSCPLCR 175
+ C ICL + T I C H FH+ CI W N SCPLCR
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 126 EEEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDM 178
EE + + C IC ++ C H FH C+ WF R +CP CR ++
Sbjct: 280 EELRQSDNICIICREDMVNHSKKLPCGHIFHTTCLRSWF-QRQQTCPTCRLNI 331
>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3
SV=1
Length = 289
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 128 EEEEEERCAICLGSGTG-SVIQM--DCLHQFHEKCIACWFDNRNYSCPLCRFDM 178
EE+ CAICL G V+++ C H FH++CI WF++ +CP+CR D+
Sbjct: 103 EEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHR-TCPVCRRDL 155
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=ASR1 PE=3 SV=1
Length = 328
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 118 SQPIVVDCEEEEEEEERCAIC---LGSGTGSVIQMDCLHQFHEKCIACWF--DNRNYSCP 172
S I + C ++E C+IC + SG G + M C H++H CI WF + N SCP
Sbjct: 6 SSHIAMGCPQDE-----CSICWESMPSGVGRL--MPCGHEYHLACIRKWFHLHSGNRSCP 58
Query: 173 LCRFDMATAV 182
+CR + + V
Sbjct: 59 VCRTEASVLV 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,478,767
Number of Sequences: 539616
Number of extensions: 3064561
Number of successful extensions: 10434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 449
Number of HSP's that attempted gapping in prelim test: 10213
Number of HSP's gapped (non-prelim): 551
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)