Query 047298
Match_columns 192
No_of_seqs 209 out of 1614
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 6.5E-16 2.2E-20 107.5 5.8 72 107-180 16-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 7.8E-16 2.7E-20 103.1 3.3 63 115-180 8-72 (75)
3 2kiz_A E3 ubiquitin-protein li 99.5 4E-15 1.4E-19 97.9 4.1 54 128-182 10-65 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.5 4.3E-15 1.5E-19 93.4 4.0 49 130-179 3-54 (55)
5 2ecl_A Ring-box protein 2; RNF 99.5 5.7E-15 2E-19 100.6 4.1 52 129-181 12-77 (81)
6 2ep4_A Ring finger protein 24; 99.5 7.8E-15 2.7E-19 97.8 3.9 55 128-183 11-67 (74)
7 2ecm_A Ring finger and CHY zin 99.5 1.2E-14 4.3E-19 91.2 4.1 49 130-179 3-54 (55)
8 3ng2_A RNF4, snurf, ring finge 99.5 3.1E-15 1.1E-19 98.7 1.2 58 129-187 7-70 (71)
9 2ect_A Ring finger protein 126 99.5 1.1E-14 3.7E-19 98.0 3.8 55 128-183 11-67 (78)
10 1chc_A Equine herpes virus-1 r 99.5 1.6E-14 5.4E-19 94.7 3.9 50 130-180 3-52 (68)
11 2xeu_A Ring finger protein 4; 99.5 5.8E-15 2E-19 95.3 1.2 56 131-187 2-63 (64)
12 2djb_A Polycomb group ring fin 99.5 2E-14 6.7E-19 95.5 3.7 56 128-184 11-66 (72)
13 2d8t_A Dactylidin, ring finger 99.5 1.8E-14 6.2E-19 95.4 3.5 54 128-183 11-64 (71)
14 3dpl_R Ring-box protein 1; ubi 99.5 3.7E-14 1.3E-18 101.4 5.0 50 129-179 34-100 (106)
15 2ea6_A Ring finger protein 4; 99.4 2.6E-14 8.8E-19 93.6 1.9 52 128-180 11-68 (69)
16 2ecy_A TNF receptor-associated 99.4 8.5E-14 2.9E-18 90.8 3.8 52 129-181 12-63 (66)
17 2ecn_A Ring finger protein 141 99.4 2.8E-14 9.6E-19 94.0 1.3 51 129-182 12-62 (70)
18 1v87_A Deltex protein 2; ring- 99.4 1.3E-13 4.6E-18 99.2 4.6 50 131-180 24-94 (114)
19 4ayc_A E3 ubiquitin-protein li 99.4 6.7E-14 2.3E-18 104.4 3.0 48 131-180 52-99 (138)
20 2csy_A Zinc finger protein 183 99.4 1.4E-13 4.7E-18 93.3 4.2 50 128-179 11-60 (81)
21 1t1h_A Gspef-atpub14, armadill 99.4 1.8E-13 6.1E-18 92.0 4.1 53 129-182 5-57 (78)
22 3lrq_A E3 ubiquitin-protein li 99.4 8.8E-14 3E-18 98.2 2.6 55 129-183 19-73 (100)
23 2yur_A Retinoblastoma-binding 99.4 2.2E-13 7.6E-18 90.9 4.2 51 128-180 11-64 (74)
24 2ysl_A Tripartite motif-contai 99.4 2.1E-13 7.3E-18 90.3 3.9 53 128-181 16-70 (73)
25 1g25_A CDK-activating kinase a 99.4 2.1E-13 7.2E-18 88.6 2.5 54 131-184 2-59 (65)
26 2y43_A E3 ubiquitin-protein li 99.4 2.6E-13 9E-18 95.4 3.0 51 130-181 20-70 (99)
27 2egp_A Tripartite motif-contai 99.3 1.8E-13 6.2E-18 92.0 1.9 57 128-185 8-70 (79)
28 2ct2_A Tripartite motif protei 99.3 4.7E-13 1.6E-17 91.6 4.0 55 128-182 11-70 (88)
29 2ecw_A Tripartite motif-contai 99.3 5.8E-13 2E-17 90.3 4.4 55 129-184 16-75 (85)
30 4a0k_B E3 ubiquitin-protein li 99.3 1.1E-13 3.8E-18 100.5 0.4 51 129-180 45-112 (117)
31 2ckl_A Polycomb group ring fin 99.3 6.6E-13 2.3E-17 94.8 4.3 52 129-181 12-63 (108)
32 2ecv_A Tripartite motif-contai 99.3 6.6E-13 2.3E-17 90.1 3.7 55 129-184 16-75 (85)
33 3fl2_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 96.8 3.4 50 130-180 50-99 (124)
34 2ysj_A Tripartite motif-contai 99.3 2E-12 7E-17 83.3 4.3 46 128-174 16-63 (63)
35 2ckl_B Ubiquitin ligase protei 99.3 1.4E-12 4.6E-17 99.9 3.7 51 130-180 52-102 (165)
36 3ztg_A E3 ubiquitin-protein li 99.3 1.8E-12 6.1E-17 89.7 4.0 51 128-179 9-61 (92)
37 2d8s_A Cellular modulator of i 99.3 1.3E-12 4.3E-17 88.8 3.1 54 128-181 11-71 (80)
38 4ap4_A E3 ubiquitin ligase RNF 99.3 9.6E-13 3.3E-17 96.4 2.6 57 130-187 5-67 (133)
39 2ecj_A Tripartite motif-contai 99.3 2.5E-12 8.7E-17 81.2 3.7 46 128-174 11-58 (58)
40 1rmd_A RAG1; V(D)J recombinati 99.2 2.2E-12 7.5E-17 93.1 3.0 53 129-182 20-72 (116)
41 3l11_A E3 ubiquitin-protein li 99.2 8.9E-13 3E-17 95.1 0.8 52 128-180 11-62 (115)
42 1jm7_A BRCA1, breast cancer ty 99.2 2.9E-12 1E-16 91.6 3.5 51 131-183 20-73 (112)
43 1z6u_A NP95-like ring finger p 99.2 2.9E-12 9.8E-17 97.0 3.5 51 130-181 76-126 (150)
44 4ap4_A E3 ubiquitin ligase RNF 99.2 1.5E-12 5.2E-17 95.3 1.7 58 129-187 69-132 (133)
45 3hct_A TNF receptor-associated 99.2 3.6E-12 1.2E-16 92.4 3.4 54 128-182 14-67 (118)
46 2ct0_A Non-SMC element 1 homol 99.2 5.9E-12 2E-16 84.1 4.0 54 128-182 11-66 (74)
47 2kr4_A Ubiquitin conjugation f 99.2 6.6E-12 2.2E-16 86.1 3.8 52 129-182 11-62 (85)
48 2vje_A E3 ubiquitin-protein li 99.2 7.8E-12 2.7E-16 81.2 3.4 51 129-180 5-57 (64)
49 2kre_A Ubiquitin conjugation f 99.2 8.4E-12 2.9E-16 88.2 3.5 52 129-182 26-77 (100)
50 2vje_B MDM4 protein; proto-onc 99.2 1.2E-11 4.1E-16 80.1 3.3 52 128-180 3-56 (63)
51 1wgm_A Ubiquitin conjugation f 99.2 1.4E-11 4.8E-16 86.7 3.9 52 129-182 19-71 (98)
52 1e4u_A Transcriptional repress 99.2 1.5E-11 5.1E-16 83.1 3.6 54 129-182 8-64 (78)
53 3knv_A TNF receptor-associated 99.1 8.7E-12 3E-16 93.4 1.6 51 128-179 27-77 (141)
54 2y1n_A E3 ubiquitin-protein li 99.1 3.4E-11 1.2E-15 103.5 3.9 51 132-183 332-382 (389)
55 1bor_A Transcription factor PM 99.1 3E-11 1E-15 76.2 1.3 48 129-181 3-50 (56)
56 2c2l_A CHIP, carboxy terminus 99.1 8.2E-11 2.8E-15 96.2 4.1 54 128-182 204-257 (281)
57 1jm7_B BARD1, BRCA1-associated 99.0 2.5E-11 8.6E-16 87.8 0.5 48 130-180 20-67 (117)
58 4ic3_A E3 ubiquitin-protein li 99.0 4.8E-11 1.6E-15 79.6 1.7 46 130-181 22-68 (74)
59 3hcs_A TNF receptor-associated 99.0 1.4E-10 4.8E-15 89.0 3.6 54 128-182 14-67 (170)
60 2yu4_A E3 SUMO-protein ligase 99.0 1.6E-10 5.5E-15 80.5 3.3 52 129-181 4-64 (94)
61 2f42_A STIP1 homology and U-bo 99.0 3.3E-10 1.1E-14 87.9 4.1 55 128-183 102-156 (179)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1E-09 3.5E-14 70.3 3.3 51 129-180 3-59 (60)
63 2ecg_A Baculoviral IAP repeat- 98.8 6.3E-10 2.1E-14 74.2 1.6 45 130-180 23-68 (75)
64 2ea5_A Cell growth regulator w 98.8 2E-09 6.8E-14 70.6 3.5 48 128-181 11-59 (68)
65 3htk_C E3 SUMO-protein ligase 98.8 2.2E-09 7.5E-14 87.5 3.2 55 129-183 178-235 (267)
66 2yho_A E3 ubiquitin-protein li 98.8 9.8E-10 3.4E-14 74.2 0.9 45 131-181 17-62 (79)
67 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.2E-09 4E-14 92.1 1.3 54 129-182 305-375 (381)
68 2bay_A PRE-mRNA splicing facto 98.8 3.4E-09 1.2E-13 68.0 2.7 55 132-187 3-57 (61)
69 3t6p_A Baculoviral IAP repeat- 98.6 7.3E-09 2.5E-13 88.1 1.5 46 130-181 293-339 (345)
70 1wim_A KIAA0161 protein; ring 98.6 2.5E-08 8.6E-13 69.1 2.8 54 131-184 4-70 (94)
71 3vk6_A E3 ubiquitin-protein li 98.5 1.1E-07 3.7E-12 66.2 3.9 47 134-180 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 4.5E-06 1.5E-10 67.3 4.0 51 131-181 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.0 0.00017 5.9E-09 49.4 1.4 54 128-185 24-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.012 4.1E-07 40.4 2.5 34 131-164 2-38 (101)
75 2lri_C Autoimmune regulator; Z 92.5 0.076 2.6E-06 33.9 2.5 48 129-178 9-60 (66)
76 3m62_A Ubiquitin conjugation f 89.9 0.27 9.3E-06 46.6 4.4 55 129-185 888-943 (968)
77 1wil_A KIAA1045 protein; ring 88.3 0.36 1.2E-05 32.2 2.9 36 128-163 11-47 (89)
78 2k16_A Transcription initiatio 87.5 0.12 4.2E-06 33.4 0.3 51 128-178 14-69 (75)
79 1f62_A Transcription factor WS 85.5 0.42 1.4E-05 28.4 1.9 43 134-176 2-49 (51)
80 1mm2_A MI2-beta; PHD, zinc fin 85.4 0.18 6.3E-06 31.4 0.3 50 127-178 4-57 (61)
81 2l5u_A Chromodomain-helicase-D 84.2 0.5 1.7E-05 29.4 1.9 47 128-176 7-57 (61)
82 3u5n_A E3 ubiquitin-protein li 81.9 0.35 1.2E-05 37.5 0.6 48 129-178 4-55 (207)
83 3o36_A Transcription intermedi 81.3 0.38 1.3E-05 36.5 0.6 46 131-178 3-52 (184)
84 3i2d_A E3 SUMO-protein ligase 81.1 1.3 4.3E-05 37.6 3.8 51 131-181 248-301 (371)
85 2ysm_A Myeloid/lymphoid or mix 81.0 0.52 1.8E-05 32.7 1.2 47 129-175 4-55 (111)
86 4fo9_A E3 SUMO-protein ligase 80.5 1.4 4.8E-05 37.2 3.9 50 132-181 215-267 (360)
87 2yql_A PHD finger protein 21A; 76.7 0.3 1E-05 29.8 -1.1 49 127-176 4-55 (56)
88 3shb_A E3 ubiquitin-protein li 76.2 0.49 1.7E-05 31.0 -0.2 43 134-176 28-76 (77)
89 2lbm_A Transcriptional regulat 74.2 3.4 0.00012 30.2 3.9 48 128-177 59-117 (142)
90 1fp0_A KAP-1 corepressor; PHD 73.7 1.3 4.3E-05 29.9 1.4 49 127-177 20-72 (88)
91 1weo_A Cellulose synthase, cat 73.3 6 0.00021 26.6 4.6 51 129-179 13-69 (93)
92 2d8v_A Zinc finger FYVE domain 71.1 3 0.0001 26.4 2.5 34 128-163 4-38 (67)
93 1wen_A Inhibitor of growth fam 70.1 2.8 9.4E-05 26.8 2.3 45 130-177 14-65 (71)
94 3asl_A E3 ubiquitin-protein li 70.1 1.2 4E-05 28.5 0.5 44 134-177 20-69 (70)
95 2yt5_A Metal-response element- 69.7 2.3 7.9E-05 26.4 1.9 48 129-177 3-61 (66)
96 2e6s_A E3 ubiquitin-protein li 68.7 1.1 3.7E-05 29.3 0.1 43 133-176 27-76 (77)
97 3v43_A Histone acetyltransfera 68.3 1.2 4.1E-05 31.0 0.3 43 134-176 63-111 (112)
98 2e6r_A Jumonji/ARID domain-con 67.9 0.54 1.8E-05 31.8 -1.6 49 128-176 12-65 (92)
99 2ro1_A Transcription intermedi 67.8 1.2 4.2E-05 34.0 0.3 46 132-178 2-50 (189)
100 2lv9_A Histone-lysine N-methyl 67.4 1.8 6.2E-05 29.5 1.1 43 133-176 29-75 (98)
101 3lqh_A Histone-lysine N-methyl 66.8 2.8 9.6E-05 31.9 2.2 49 132-180 2-66 (183)
102 3fyb_A Protein of unknown func 66.8 2.3 7.7E-05 29.2 1.4 12 154-165 41-52 (104)
103 2o35_A Hypothetical protein DU 66.7 2.3 7.7E-05 29.2 1.4 12 154-165 42-53 (105)
104 1weu_A Inhibitor of growth fam 66.2 2.8 9.5E-05 28.3 1.8 46 130-178 34-86 (91)
105 1xwh_A Autoimmune regulator; P 63.5 1.1 3.8E-05 28.1 -0.6 46 129-176 5-54 (66)
106 1we9_A PHD finger family prote 63.3 3.1 0.00011 25.6 1.6 49 129-177 3-58 (64)
107 2ku3_A Bromodomain-containing 63.0 6.2 0.00021 25.1 3.0 48 128-176 12-65 (71)
108 1joc_A EEA1, early endosomal a 62.7 3.7 0.00013 29.2 2.0 34 129-162 66-102 (125)
109 3v43_A Histone acetyltransfera 62.0 7.7 0.00026 26.8 3.5 45 131-175 4-62 (112)
110 2puy_A PHD finger protein 21A; 62.0 1.4 4.7E-05 27.1 -0.4 47 130-178 3-53 (60)
111 3ask_A E3 ubiquitin-protein li 61.1 2.1 7.2E-05 33.8 0.5 44 134-177 176-225 (226)
112 3ql9_A Transcriptional regulat 61.1 11 0.00037 27.0 4.3 49 128-178 53-112 (129)
113 1wep_A PHF8; structural genomi 60.0 7.3 0.00025 25.1 2.9 51 130-181 10-67 (79)
114 2l43_A N-teminal domain from h 60.0 7 0.00024 25.9 2.9 52 129-180 22-78 (88)
115 3t7l_A Zinc finger FYVE domain 59.9 4.6 0.00016 26.9 2.0 35 129-163 17-54 (90)
116 2yw8_A RUN and FYVE domain-con 59.5 4.4 0.00015 26.4 1.8 34 129-162 16-52 (82)
117 1z2q_A LM5-1; membrane protein 59.1 4.9 0.00017 26.4 2.0 35 129-163 18-55 (84)
118 2a20_A Regulating synaptic mem 58.8 5.8 0.0002 24.5 2.1 49 128-176 5-59 (62)
119 4gne_A Histone-lysine N-methyl 58.4 7.3 0.00025 27.0 2.8 48 127-178 10-63 (107)
120 1wfk_A Zinc finger, FYVE domai 58.2 5.3 0.00018 26.5 2.1 51 129-179 6-65 (88)
121 1vfy_A Phosphatidylinositol-3- 56.9 5.5 0.00019 25.3 1.9 30 132-161 11-43 (73)
122 3c6w_A P28ING5, inhibitor of g 56.5 2.5 8.6E-05 26.0 0.2 43 131-176 8-57 (59)
123 3vhs_A ATPase wrnip1; zinc fin 55.4 3.9 0.00013 20.8 0.8 16 170-185 8-23 (29)
124 1x4u_A Zinc finger, FYVE domai 55.3 5.3 0.00018 26.1 1.7 34 129-162 11-47 (84)
125 1z60_A TFIIH basal transcripti 55.3 11 0.00036 23.3 2.9 41 133-174 16-58 (59)
126 2kwj_A Zinc finger protein DPF 55.2 3.4 0.00012 28.8 0.7 42 133-174 2-58 (114)
127 1wev_A Riken cDNA 1110020M19; 55.0 3.5 0.00012 27.4 0.7 51 129-179 13-74 (88)
128 2vnf_A ING 4, P29ING4, inhibit 54.9 2.6 9E-05 25.9 0.1 43 131-176 9-58 (60)
129 2jvx_A NF-kappa-B essential mo 54.6 2.7 9.2E-05 22.0 0.1 15 168-182 3-17 (28)
130 1y02_A CARP2, FYVE-ring finger 53.2 1.2 4.1E-05 31.7 -2.0 46 130-176 17-65 (120)
131 2ri7_A Nucleosome-remodeling f 50.8 3.7 0.00013 30.5 0.3 48 129-177 5-59 (174)
132 2vpb_A Hpygo1, pygopus homolog 50.8 8.4 0.00029 24.0 2.0 33 129-161 5-41 (65)
133 2gmg_A Hypothetical protein PF 50.5 3.1 0.00011 28.8 -0.1 26 149-180 71-96 (105)
134 2zet_C Melanophilin; complex, 50.1 9.7 0.00033 28.0 2.5 46 130-176 66-116 (153)
135 1dvp_A HRS, hepatocyte growth 48.8 6.1 0.00021 30.6 1.3 32 131-162 160-194 (220)
136 3zyq_A Hepatocyte growth facto 47.1 7.2 0.00025 30.4 1.5 32 131-162 163-197 (226)
137 2g6q_A Inhibitor of growth pro 47.1 4.3 0.00015 25.1 0.2 45 131-176 10-59 (62)
138 3mjh_B Early endosome antigen 46.6 5.6 0.00019 21.7 0.5 12 170-181 7-18 (34)
139 2cs3_A Protein C14ORF4, MY039 45.7 26 0.0009 23.0 3.8 36 129-166 12-52 (93)
140 1zbd_B Rabphilin-3A; G protein 45.2 8.5 0.00029 27.7 1.5 32 130-161 53-88 (134)
141 3mpx_A FYVE, rhogef and PH dom 43.9 4.8 0.00017 34.0 0.0 49 130-178 373-430 (434)
142 2jmo_A Parkin; IBR, E3 ligase, 43.5 1.7 5.9E-05 28.4 -2.3 20 150-172 55-74 (80)
143 1x62_A C-terminal LIM domain p 40.9 25 0.00084 22.1 3.2 41 130-180 13-53 (79)
144 1x61_A Thyroid receptor intera 39.7 26 0.00088 21.4 3.0 39 132-179 5-44 (72)
145 3a1b_A DNA (cytosine-5)-methyl 39.3 22 0.00076 26.3 3.0 48 128-177 75-134 (159)
146 2dar_A PDZ and LIM domain prot 38.3 28 0.00094 22.4 3.1 41 130-180 23-63 (90)
147 2cu8_A Cysteine-rich protein 2 38.1 22 0.00076 22.0 2.6 40 131-180 8-48 (76)
148 1wyh_A SLIM 2, skeletal muscle 36.9 32 0.0011 20.8 3.2 39 132-180 5-45 (72)
149 1x64_A Alpha-actinin-2 associa 36.5 38 0.0013 21.7 3.6 41 130-180 23-63 (89)
150 2d8x_A Protein pinch; LIM doma 34.7 32 0.0011 20.8 2.8 40 131-180 4-43 (70)
151 1g47_A Pinch protein; LIM doma 34.4 32 0.0011 21.2 2.9 42 130-181 9-52 (77)
152 1zfo_A LAsp-1; LIM domain, zin 33.8 18 0.00061 18.8 1.3 28 132-159 3-30 (31)
153 2kgg_A Histone demethylase jar 33.4 23 0.00079 20.7 1.9 42 134-175 4-52 (52)
154 2cor_A Pinch protein; LIM doma 33.1 38 0.0013 21.3 3.1 43 129-181 12-54 (79)
155 2d8z_A Four and A half LIM dom 33.0 44 0.0015 20.1 3.3 38 132-179 5-42 (70)
156 2ct7_A Ring finger protein 31; 32.7 3.2 0.00011 27.4 -2.4 14 150-163 48-61 (86)
157 2l4z_A DNA endonuclease RBBP8, 31.5 32 0.0011 23.9 2.7 40 131-179 60-99 (123)
158 2co8_A NEDD9 interacting prote 31.3 33 0.0011 21.7 2.6 41 130-180 13-54 (82)
159 3f6q_B LIM and senescent cell 31.0 50 0.0017 19.7 3.3 42 131-181 10-52 (72)
160 1x4l_A Skeletal muscle LIM-pro 30.6 37 0.0013 20.6 2.7 38 132-179 5-46 (72)
161 2fiy_A Protein FDHE homolog; F 30.3 3 0.0001 34.4 -3.3 47 130-177 180-231 (309)
162 2xb1_A Pygopus homolog 2, B-ce 30.1 29 0.001 23.6 2.2 47 132-178 3-62 (105)
163 1nyp_A Pinch protein; LIM doma 30.0 41 0.0014 20.0 2.7 39 132-180 5-43 (66)
164 1iml_A CRIP, cysteine rich int 29.8 26 0.00091 21.6 1.9 40 133-175 28-68 (76)
165 2pk7_A Uncharacterized protein 29.5 11 0.00038 23.9 -0.1 19 162-181 3-21 (69)
166 1x4k_A Skeletal muscle LIM-pro 29.2 35 0.0012 20.7 2.3 39 132-180 5-45 (72)
167 2cur_A Skeletal muscle LIM-pro 28.7 43 0.0015 20.1 2.7 38 132-179 5-42 (69)
168 2jny_A Uncharacterized BCR; st 28.5 10 0.00036 23.9 -0.3 19 162-181 5-23 (67)
169 1x63_A Skeletal muscle LIM-pro 28.3 48 0.0016 20.6 3.0 40 132-181 15-56 (82)
170 2dj7_A Actin-binding LIM prote 28.2 40 0.0014 21.2 2.6 40 130-179 13-53 (80)
171 1x68_A FHL5 protein; four-and- 27.8 44 0.0015 20.6 2.7 39 132-179 5-46 (76)
172 1wig_A KIAA1808 protein; LIM d 27.6 55 0.0019 20.1 3.1 38 132-179 5-42 (73)
173 2d8y_A Eplin protein; LIM doma 27.5 50 0.0017 21.2 3.0 40 131-180 14-54 (91)
174 1wem_A Death associated transc 26.1 59 0.002 20.4 3.1 45 132-177 16-70 (76)
175 1v6g_A Actin binding LIM prote 24.9 49 0.0017 20.6 2.5 39 132-180 15-53 (81)
176 2pv0_B DNA (cytosine-5)-methyl 24.3 52 0.0018 27.9 3.1 48 128-177 89-148 (386)
177 2uzg_A Ubiquitin carboxyl-term 24.3 43 0.0015 22.4 2.2 28 131-158 24-53 (97)
178 1wd2_A Ariadne-1 protein homol 24.1 20 0.00068 21.9 0.4 18 163-180 1-18 (60)
179 2lq6_A Bromodomain-containing 24.0 79 0.0027 20.6 3.5 34 130-163 15-51 (87)
180 1x6a_A LIMK-2, LIM domain kina 23.9 53 0.0018 20.4 2.5 39 132-180 15-53 (81)
181 2dlo_A Thyroid receptor-intera 23.4 51 0.0017 20.5 2.4 40 131-180 14-53 (81)
182 1j2o_A FLIN2, fusion of rhombo 22.4 86 0.0029 21.0 3.5 14 152-165 52-65 (114)
183 1a7i_A QCRP2 (LIM1); LIM domai 21.9 23 0.00078 22.3 0.4 39 132-180 7-46 (81)
184 1m3v_A FLIN4, fusion of the LI 21.6 58 0.002 22.2 2.5 49 133-182 33-83 (122)
185 2l3k_A Rhombotin-2, linker, LI 21.5 49 0.0017 22.6 2.1 14 152-165 57-70 (123)
186 2jmi_A Protein YNG1, ING1 homo 21.3 33 0.0011 22.8 1.1 44 129-175 23-74 (90)
187 2cuq_A Four and A half LIM dom 20.8 77 0.0026 19.5 2.8 39 132-180 15-53 (80)
188 2egq_A FHL1 protein; LIM domai 20.3 63 0.0021 19.8 2.3 40 132-180 15-58 (77)
189 2jr6_A UPF0434 protein NMA0874 20.2 11 0.00039 23.8 -1.4 15 167-181 7-21 (68)
190 1l8d_A DNA double-strand break 20.2 28 0.00096 23.5 0.6 12 169-180 48-59 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=107.49 Aligned_cols=72 Identities=24% Similarity=0.600 Sum_probs=56.4
Q ss_pred CChHHHHHhhccceeeeccCccccccccccccccc--CCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 107 VTKKDVVKYLQSQPIVVDCEEEEEEEERCAICLGS--GTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~ICl~~--~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
..+++.++.|+...+.... ....++..|+||++. ....++.++|+|.||..||..|++ .+.+||+||..+..
T Consensus 16 ~~s~~~i~~lp~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 16 PASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCHHHHHTSCEEECCTTC-SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCHHHHHhCCCeeecccc-cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 3456788888877766222 345567899999993 344566689999999999999999 88999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.8e-16 Score=103.08 Aligned_cols=63 Identities=29% Similarity=0.671 Sum_probs=48.4
Q ss_pred hhccceeeeccCcccccccccccccccC--CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 115 YLQSQPIVVDCEEEEEEEERCAICLGSG--TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~C~ICl~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.|+...+. ......++..|+||++.. ...++.++|+|+||..||..|++ .+.+||+||+.+..
T Consensus 8 ~lp~~~~~--~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 8 QLPSYRFN--PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGP 72 (75)
T ss_dssp SCCCEEBC--SSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCC
T ss_pred hCCcEEec--CccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCC
Confidence 34444443 223456778999999943 34466789999999999999999 78899999999875
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=4e-15 Score=97.86 Aligned_cols=54 Identities=39% Similarity=0.949 Sum_probs=45.3
Q ss_pred ccccccccccccccC--CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSG--TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
...++..|+||++.. ...++.++|+|.||..||..|+. .+.+||+||..+....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-cCCCCcCcCccccCcC
Confidence 456678999999943 34567789999999999999999 7889999999987754
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=4.3e-15 Score=93.37 Aligned_cols=49 Identities=31% Similarity=0.863 Sum_probs=40.8
Q ss_pred ccccccccccccC--CCceEEec-CCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 130 EEEERCAICLGSG--TGSVIQMD-CLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 130 ~~~~~C~ICl~~~--~~~~~~l~-C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
+++..|+||++.. .+.+..++ |+|.||..||.+|++ .+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 4577999999943 33455576 999999999999999 8899999999874
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.7e-15 Score=100.57 Aligned_cols=52 Identities=35% Similarity=0.807 Sum_probs=41.5
Q ss_pred cccccccccccccCCC-------------ceEEe-cCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 129 EEEEERCAICLGSGTG-------------SVIQM-DCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~-------------~~~~l-~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
+.++..|+||++...+ .++.+ +|+|.||..||.+|+. .+.+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVVQ 77 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcchh
Confidence 3467789999994432 24445 5999999999999999 889999999998654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=97.77 Aligned_cols=55 Identities=31% Similarity=0.675 Sum_probs=45.0
Q ss_pred ccccccccccccccC--CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 128 EEEEEERCAICLGSG--TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
...++..|+||++.. ...+..++|+|.||..||..|++ .+.+||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-HCSBCTTTCCBCSSCCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-cCCcCCCcCcccccccc
Confidence 345678999999943 34456679999999999999999 77899999999876443
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=1.2e-14 Score=91.17 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=41.3
Q ss_pred ccccccccccccCC---CceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 130 EEEERCAICLGSGT---GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 130 ~~~~~C~ICl~~~~---~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
.++..|+||++... ..+..++|+|.||..||.+|+. .+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-HTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-cCCcCCCCCCcCC
Confidence 45789999999442 3466689999999999999999 7799999999874
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=3.1e-15 Score=98.74 Aligned_cols=58 Identities=19% Similarity=0.561 Sum_probs=47.1
Q ss_pred cccccccccccccCCC------ceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhhhcc
Q 047298 129 EEEEERCAICLGSGTG------SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMF 187 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~------~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~~~ 187 (192)
..++..|+||++...+ .++.++|||.||..||.+|++ .+.+||+||..+......++|
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccChhheeecc
Confidence 4567899999994332 335689999999999999999 788999999999876665544
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.1e-14 Score=98.04 Aligned_cols=55 Identities=31% Similarity=0.717 Sum_probs=45.5
Q ss_pred ccccccccccccccCC--CceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 128 EEEEEERCAICLGSGT--GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~--~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
...++..|+||++... ..+..++|+|.||..||..|++ .+.+||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCccc
Confidence 4556789999999443 4456679999999999999999 88999999999876543
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.48 E-value=1.6e-14 Score=94.66 Aligned_cols=50 Identities=36% Similarity=0.893 Sum_probs=44.2
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.++..|+||++...+++..++|+|.||..|+..|+. .+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 357799999997777667789999999999999999 88999999999864
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=5.8e-15 Score=95.31 Aligned_cols=56 Identities=20% Similarity=0.577 Sum_probs=46.1
Q ss_pred cccccccccccCCC------ceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhhhcc
Q 047298 131 EEERCAICLGSGTG------SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMF 187 (192)
Q Consensus 131 ~~~~C~ICl~~~~~------~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~~~ 187 (192)
++..|+||++...+ .+..++|||.||..||..|+. .+.+||+||..+......+.|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-HCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-cCCCCCCCCccCCccceeeee
Confidence 46799999994332 345689999999999999999 788999999999887666554
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=95.48 Aligned_cols=56 Identities=27% Similarity=0.497 Sum_probs=47.5
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIE 184 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~ 184 (192)
...+...|+||++...+++..++|+|.||..||..|++ .+..||+||..+......
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCccccc
Confidence 34567899999998777777459999999999999999 789999999999775543
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=95.39 Aligned_cols=54 Identities=26% Similarity=0.483 Sum_probs=46.2
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
...++..|+||++...+++. ++|+|.||..||..|+. .+..||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASW-LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCHHHH
T ss_pred cCCCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHH-CCCcCcCcCchhCHhhc
Confidence 35567899999997777655 89999999999999999 78999999999987543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=3.7e-14 Score=101.44 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=41.6
Q ss_pred cccccccccccccCCC-----------------ceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 129 EEEEERCAICLGSGTG-----------------SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~-----------------~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
+.+++.|+||++...+ .++.++|+|.||..||.+|+. .+.+||+||+++.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 4467899999994332 256679999999999999999 8999999999864
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-14 Score=93.59 Aligned_cols=52 Identities=21% Similarity=0.595 Sum_probs=42.5
Q ss_pred ccccccccccccccCCC------ceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 128 EEEEEERCAICLGSGTG------SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~------~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...+...|+||++...+ .+..++|+|.||..||..|+. .+.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-cCCCCCCCCCccCc
Confidence 35567899999994332 235589999999999999999 78899999998753
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.5e-14 Score=90.77 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=44.4
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
..+...|+||++...+++. ++|||.||..||..|+...+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999997777666 899999999999999953677899999998764
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=94.05 Aligned_cols=51 Identities=39% Similarity=0.957 Sum_probs=44.2
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..+...|+||++...+ +.++|+|.||..||..|+. .+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 4567899999996666 5589999999999999999 8999999999987644
No 18
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=1.3e-13 Score=99.15 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=39.2
Q ss_pred cccccccccccCCC-----------------ceEEecCCCccChHhHHHHHh----CCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGTG-----------------SVIQMDCLHQFHEKCIACWFD----NRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~~-----------------~~~~l~C~H~Fh~~CI~~Wl~----~~~~~CP~CR~~l~~ 180 (192)
.+..|+||++.... .+..++|+|+||..||..|+. ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45799999994422 223579999999999999994 157799999998854
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.41 E-value=6.7e-14 Score=104.37 Aligned_cols=48 Identities=35% Similarity=0.859 Sum_probs=42.5
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
++..|+||++...+++. ++|||.||..||..|+. .+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 45689999997777665 89999999999999999 88999999999864
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=93.34 Aligned_cols=50 Identities=32% Similarity=0.561 Sum_probs=43.9
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...+...|+||++...+++. ++|+|.||..||..|+. ....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 34567899999998777665 89999999999999999 8889999999975
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=1.8e-13 Score=92.01 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=45.4
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..++..|+||++.+.+++. ++|||.||..||..|+..++.+||+||..+....
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4467899999998888776 7999999999999999834889999999987543
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=8.8e-14 Score=98.24 Aligned_cols=55 Identities=24% Similarity=0.508 Sum_probs=45.5
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
..++..|+||++...+++..++|||.||..||..|+......||+||..+.....
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 3467899999998777766589999999999999999333799999999876543
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=90.90 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCceEEec-CCCccChHhHHHHHhCCC--CCCcccCcccch
Q 047298 128 EEEEEERCAICLGSGTGSVIQMD-CLHQFHEKCIACWFDNRN--YSCPLCRFDMAT 180 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~~~--~~CP~CR~~l~~ 180 (192)
...++..|+||++...+++. ++ |+|.||..||..|+. .+ ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~-~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALL-ESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHH-HSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHH-hcCCCcCCCCCCcCCC
Confidence 34567899999998888776 88 999999999999998 43 689999997544
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=90.35 Aligned_cols=53 Identities=34% Similarity=0.659 Sum_probs=43.9
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhC--CCCCCcccCcccchh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN--RNYSCPLCRFDMATA 181 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~--~~~~CP~CR~~l~~~ 181 (192)
...++..|+||++...+++. ++|+|.||..||..|++. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34567899999997777665 799999999999999962 456899999998754
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.1e-13 Score=88.62 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=42.9
Q ss_pred cccccccccc-cCCCce---EEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhh
Q 047298 131 EEERCAICLG-SGTGSV---IQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIE 184 (192)
Q Consensus 131 ~~~~C~ICl~-~~~~~~---~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~ 184 (192)
++..|+||++ ...++. ..++|||.||..||..|+......||+||..+......
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 4678999999 554443 44799999999999999774567899999999765443
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=2.6e-13 Score=95.35 Aligned_cols=51 Identities=24% Similarity=0.579 Sum_probs=44.4
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
.+...|+||++...+++..++|||.||..||..|+. .+..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChh
Confidence 356899999998777776449999999999999999 889999999998764
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=91.98 Aligned_cols=57 Identities=28% Similarity=0.586 Sum_probs=46.3
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCC------CCCCcccCcccchhhhhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNR------NYSCPLCRFDMATAVIES 185 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~------~~~CP~CR~~l~~~~~~~ 185 (192)
...++..|+||++...+++. ++|||.||..||..|+... ...||+||..+.......
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred hcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 34567899999997777665 8999999999999999831 678999999998755443
No 28
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-13 Score=91.65 Aligned_cols=55 Identities=22% Similarity=0.440 Sum_probs=43.3
Q ss_pred ccccccccccccccCCC---ceEEecCCCccChHhHHHHHhCC--CCCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSGTG---SVIQMDCLHQFHEKCIACWFDNR--NYSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~---~~~~l~C~H~Fh~~CI~~Wl~~~--~~~CP~CR~~l~~~~ 182 (192)
...+...|+||++...+ ..+.++|||.||..||..|+... ...||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 45567899999995544 14558999999999999999832 378999999886643
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=5.8e-13 Score=90.34 Aligned_cols=55 Identities=31% Similarity=0.653 Sum_probs=45.7
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCC-----CCCCcccCcccchhhhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNR-----NYSCPLCRFDMATAVIE 184 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-----~~~CP~CR~~l~~~~~~ 184 (192)
..++..|+||++...+++. ++|+|.||..||..|+... ...||+||..+......
T Consensus 16 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 4567899999998777765 8999999999999999831 67899999999875433
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.34 E-value=1.1e-13 Score=100.52 Aligned_cols=51 Identities=29% Similarity=0.560 Sum_probs=2.3
Q ss_pred cccccccccccccCCC-----------------ceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 129 EEEEERCAICLGSGTG-----------------SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~-----------------~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
+.+++.|+||++...+ .+..++|+|.||..||.+|+. .+.+||+||+++..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC-----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeeee
Confidence 4567899999994322 223359999999999999999 89999999998643
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.34 E-value=6.6e-13 Score=94.78 Aligned_cols=52 Identities=23% Similarity=0.648 Sum_probs=45.5
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
..++..|+||++...+++..++|||.||..||..|+. .+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCcccccc
Confidence 4568899999998888777449999999999999999 789999999998764
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=90.07 Aligned_cols=55 Identities=33% Similarity=0.678 Sum_probs=45.4
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhC-----CCCCCcccCcccchhhhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN-----RNYSCPLCRFDMATAVIE 184 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-----~~~~CP~CR~~l~~~~~~ 184 (192)
..+...|+||++...+++. ++|+|.||..|+..|+.. ....||+||..+......
T Consensus 16 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 4567899999997777665 799999999999999982 278899999999875433
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.31 E-value=7.2e-13 Score=96.83 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=42.9
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.++..|+||++...+++. ++|||.||..||..|+......||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 356799999998777766 79999999999999998445599999999866
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=83.30 Aligned_cols=46 Identities=39% Similarity=0.746 Sum_probs=38.7
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhC--CCCCCccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN--RNYSCPLC 174 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~--~~~~CP~C 174 (192)
...++..|+||++...+++. ++|||.||..||..|++. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999997777766 799999999999999973 35589998
No 35
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.28 E-value=1.4e-12 Score=99.91 Aligned_cols=51 Identities=31% Similarity=0.709 Sum_probs=43.7
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.+...|+||++...+++..++|||.||..||..|+......||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456799999998888777559999999999999999448889999999854
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=89.73 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=42.5
Q ss_pred ccccccccccccccCCCceEEec-CCCccChHhHHHHHhC-CCCCCcccCcccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQMD-CLHQFHEKCIACWFDN-RNYSCPLCRFDMA 179 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~-C~H~Fh~~CI~~Wl~~-~~~~CP~CR~~l~ 179 (192)
...++..|+||++.+.+++. ++ |||.||..||..|+.. ....||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567899999998777776 88 9999999999999962 3368999999873
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=88.81 Aligned_cols=54 Identities=24% Similarity=0.709 Sum_probs=41.1
Q ss_pred ccccccccccccccC-CCceEEecCC-----CccChHhHHHHHhCC-CCCCcccCcccchh
Q 047298 128 EEEEEERCAICLGSG-TGSVIQMDCL-----HQFHEKCIACWFDNR-NYSCPLCRFDMATA 181 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~-~~~~~~l~C~-----H~Fh~~CI~~Wl~~~-~~~CP~CR~~l~~~ 181 (192)
...++..|.||++.. .+....+||+ |.||..||.+|+... ..+||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345678999999832 2233458996 999999999999832 25899999998764
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.28 E-value=9.6e-13 Score=96.35 Aligned_cols=57 Identities=19% Similarity=0.576 Sum_probs=46.7
Q ss_pred ccccccccccccCCCc------eEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhhhcc
Q 047298 130 EEEERCAICLGSGTGS------VIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMF 187 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~------~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~~~ 187 (192)
.++..|+||++...++ ++.++|||.||..||..|++ .+.+||+||+.+........+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCEEECB
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCccccccccc
Confidence 4578999999954333 36689999999999999999 888999999999876665544
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=81.23 Aligned_cols=46 Identities=35% Similarity=1.009 Sum_probs=38.3
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhC--CCCCCccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN--RNYSCPLC 174 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~--~~~~CP~C 174 (192)
...+...|+||++...+++. ++|+|.||..||..|+.. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999997777665 899999999999999652 67789998
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2.2e-12 Score=93.13 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=45.3
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..++..|+||++...+++. ++|||.||..||..|+.....+||+||..+....
T Consensus 20 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3457899999998877776 8999999999999999844779999999987654
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.25 E-value=8.9e-13 Score=95.08 Aligned_cols=52 Identities=23% Similarity=0.601 Sum_probs=44.6
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...++..|+||++...+++. ++|||.||..||..|+......||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34567899999998777766 79999999999999998447789999999875
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.9e-12 Score=91.56 Aligned_cols=51 Identities=27% Similarity=0.613 Sum_probs=42.9
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCCC---CCCcccCcccchhhh
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRN---YSCPLCRFDMATAVI 183 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~---~~CP~CR~~l~~~~~ 183 (192)
+...|+||++...+++. ++|||.||..||..|+. .+ ..||+||..+.....
T Consensus 20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH-SSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHH-hCCCCCCCcCCCCcCCHhhc
Confidence 46799999997777666 89999999999999998 44 489999999876543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.24 E-value=2.9e-12 Score=96.96 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=43.8
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
.+...|+||++...+++. ++|||.||..||..|+......||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 356799999998888776 899999999999999994445899999998865
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=1.5e-12 Score=95.28 Aligned_cols=58 Identities=19% Similarity=0.559 Sum_probs=48.4
Q ss_pred cccccccccccccCC------CceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhhhcc
Q 047298 129 EEEEERCAICLGSGT------GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMF 187 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~------~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~~~ 187 (192)
..+...|+||++... ...+.++|||.||..||.+|++ .+.+||+||..+......++|
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChhcceeee
Confidence 456788999999432 2335579999999999999999 889999999999998877665
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=3.6e-12 Score=92.39 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=45.0
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
...+...|+||++...+++. ++|||.||..||..|+.....+||+||..+....
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 34567899999998777765 8999999999999999833449999999987653
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=5.9e-12 Score=84.12 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCC--CCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRN--YSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~--~~CP~CR~~l~~~~ 182 (192)
-.+....|+||.+.......-..|+|.||..||.+||+ .+ .+||+||.+...++
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~-~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ-SNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST-TCSSCCCTTTCSCCCSCC
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH-hcCCCCCCCCcCcCCCCC
Confidence 35567899999995444444458999999999999998 55 78999999887543
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.21 E-value=6.6e-12 Score=86.12 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=46.4
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..+...|+||++.+.+++. ++|||.|+..||..|+. .+.+||+||..+....
T Consensus 11 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcCCeE-CCCCCEECHHHHHHHHh-cCCCCCCCcCCCChHh
Confidence 3467899999999999887 89999999999999999 7889999999987654
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=7.8e-12 Score=81.22 Aligned_cols=51 Identities=27% Similarity=0.458 Sum_probs=42.6
Q ss_pred cccccccccccccCCCceE-EecCCCc-cChHhHHHHHhCCCCCCcccCcccch
Q 047298 129 EEEEERCAICLGSGTGSVI-QMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~-~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
+.++..|+||++...+.+. .+||||. ||..|+..|.+ .+..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 4467799999997766554 1399999 89999999998 88899999999854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.19 E-value=8.4e-12 Score=88.21 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=46.3
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..+...|+||++.+.+++. ++|||.||..||..|+. .+.+||+||..+....
T Consensus 26 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhh
Confidence 3467899999999999887 88999999999999999 7899999999987643
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.17 E-value=1.2e-11 Score=80.07 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=42.7
Q ss_pred ccccccccccccccCCCceE-EecCCCc-cChHhHHHHHhCCCCCCcccCcccch
Q 047298 128 EEEEEERCAICLGSGTGSVI-QMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~-~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.+.....|+||++...+.+. .+||||. ||..|+..|.+ .+..||+||+++..
T Consensus 3 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 3 CQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp CGGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 34567899999997666544 2399998 99999999998 77899999999854
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=1.4e-11 Score=86.72 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=46.3
Q ss_pred cccccccccccccCCCceEEecCC-CccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCL-HQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..+...|+||++.+.++++ ++|| |.|+..||..|+. .+.+||+||..+....
T Consensus 19 ~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~-~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTTT
T ss_pred CcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHH-hCCCCCCCCCCCChhh
Confidence 3467899999999999887 8999 9999999999999 7889999999987644
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.16 E-value=1.5e-11 Score=83.09 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=41.6
Q ss_pred cccccccccccccCC-CceEEec--CCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGT-GSVIQMD--CLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~-~~~~~l~--C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..++.+|+||++... .+...++ |||.||..|+..|.......||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 456789999999442 2233344 99999999999998646788999999987644
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=8.7e-12 Score=93.39 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=43.2
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...+...|+||++...+++. ++|||.||..||..|+......||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34578899999998888766 8999999999999999844458999999763
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.10 E-value=3.4e-11 Score=103.45 Aligned_cols=51 Identities=24% Similarity=0.640 Sum_probs=43.1
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
...|+||++...+++. ++|||.||..|+..|+.....+||+||..+.....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 4799999997766554 89999999999999998557889999999877543
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=3e-11 Score=76.23 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=39.7
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
+.+...|+||++...+++. ++|+|.||..||..| ...||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 4567889999997777655 899999999998874 46899999988653
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=8.2e-11 Score=96.16 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=45.8
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
...+...|+||++.+.+|++ ++|||.||..||..|+.....+||+||.++....
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34567899999999999887 8999999999999999844556999999997644
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=2.5e-11 Score=87.79 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=41.2
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.+...|+||++...+++...+|||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 457899999998888877339999999999999976 789999998854
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=4.8e-11 Score=79.56 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=38.9
Q ss_pred ccccccccccccCCCceEEecCCCc-cChHhHHHHHhCCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
.++..|+||++...+.+. +||||. ||..|+..| ..||+||..+...
T Consensus 22 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 356799999997777655 899999 999999988 6799999988653
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=88.97 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=45.7
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
...+...|+||++...+++. ++|||.||..||..|+.....+||+||..+....
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 45578899999998888766 8999999999999999844559999999987643
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=80.51 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=42.5
Q ss_pred cccccccccccccCCCceEEe-cCCCccChHhHHHHHhCC-----CCCCcc--cCcc-cchh
Q 047298 129 EEEEERCAICLGSGTGSVIQM-DCLHQFHEKCIACWFDNR-----NYSCPL--CRFD-MATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l-~C~H~Fh~~CI~~Wl~~~-----~~~CP~--CR~~-l~~~ 181 (192)
..+...|+||++.+.++++ + .|||.|+..||..|+... ..+||+ |+.. +...
T Consensus 4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3467899999999999887 7 499999999999999832 358999 9876 5443
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=3.3e-10 Score=87.88 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=46.3
Q ss_pred ccccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVI 183 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~ 183 (192)
...+...||||++.+.+|++ ++|||.|+..||..|+.....+||+||.++.....
T Consensus 102 ~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 34578899999999999887 79999999999999998334479999999876543
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.87 E-value=1e-09 Score=70.29 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=40.1
Q ss_pred cccccccccccccCCCceEEecCC--C---ccChHhHHHHHhC-CCCCCcccCcccch
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCL--H---QFHEKCIACWFDN-RNYSCPLCRFDMAT 180 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~--H---~Fh~~CI~~Wl~~-~~~~CP~CR~~l~~ 180 (192)
+++...|.||++...++. .+||. | .||..|+.+|+.. ++.+||+||+.+..
T Consensus 3 ~~~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456789999999655554 47865 4 9999999999973 46789999998753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.3e-10 Score=74.19 Aligned_cols=45 Identities=27% Similarity=0.633 Sum_probs=37.2
Q ss_pred ccccccccccccCCCceEEecCCCc-cChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.++..|+||++...+++. +||||. ||..|+.. ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 346789999997777655 899999 99999954 3689999998865
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2e-09 Score=70.59 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=38.9
Q ss_pred ccccccccccccccCCCceEEecCCCc-cChHhHHHHHhCCCCCCcccCcccchh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
...+...|+||++...+.+. +||+|. ||..|+.. ...||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 45567899999997666444 899999 99999984 36899999998763
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.2e-09 Score=87.51 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=45.6
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhC-CCCCCcc--cCcccchhhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN-RNYSCPL--CRFDMATAVI 183 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~-~~~~CP~--CR~~l~~~~~ 183 (192)
...+..||||++.+.++++.+.|||.||..||..|+.. +...||+ ||..+.....
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 45668999999999999986699999999999999973 2357999 9998765443
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.78 E-value=9.8e-10 Score=74.17 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=37.6
Q ss_pred cccccccccccCCCceEEecCCCc-cChHhHHHHHhCCCCCCcccCcccchh
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
++..|+||++...+.+. +||||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 46789999997766554 899999 999999877 3899999988764
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.78 E-value=1.2e-09 Score=92.11 Aligned_cols=54 Identities=30% Similarity=0.748 Sum_probs=39.8
Q ss_pred cccccccccccccCCC--ceE-----EecCCCccChHhHHHHHhCC----------CCCCcccCcccchhh
Q 047298 129 EEEEERCAICLGSGTG--SVI-----QMDCLHQFHEKCIACWFDNR----------NYSCPLCRFDMATAV 182 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~--~~~-----~l~C~H~Fh~~CI~~Wl~~~----------~~~CP~CR~~l~~~~ 182 (192)
++...+|+||++...+ .+- ..+|+|.||..||.+|+++. ..+||+||+++....
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 4567799999993322 111 23799999999999999731 157999999987643
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.75 E-value=3.4e-09 Score=68.02 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=46.7
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhhhhhcc
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAVIESMF 187 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~~~ 187 (192)
...|+||++.+.+++...+|||+|..+||.+|+. .+.+||+++.++......+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-HHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-hCCCCcCCcCCCChhhcEECc
Confidence 4689999998888877339999999999999999 677899999999887766554
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.62 E-value=7.3e-09 Score=88.05 Aligned_cols=46 Identities=26% Similarity=0.690 Sum_probs=39.0
Q ss_pred ccccccccccccCCCceEEecCCCc-cChHhHHHHHhCCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQ-FHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~-Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
.++..|+||++...+++. +||||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 356799999998777665 899999 999999988 5799999998653
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=2.5e-08 Score=69.06 Aligned_cols=54 Identities=24% Similarity=0.551 Sum_probs=40.3
Q ss_pred cccccccccccCCCc-eEEe-cCCCccChHhHHHHHhC----C---CCCCcc--cCcc--cchhhhh
Q 047298 131 EEERCAICLGSGTGS-VIQM-DCLHQFHEKCIACWFDN----R---NYSCPL--CRFD--MATAVIE 184 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~-~~~l-~C~H~Fh~~CI~~Wl~~----~---~~~CP~--CR~~--l~~~~~~ 184 (192)
+..+|+||++....+ ...+ +|+|.||..|+..++.. + .-.||. |+.. +......
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 567899999954443 3444 79999999999999862 1 247999 9998 7665443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.47 E-value=1.1e-07 Score=66.25 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=37.3
Q ss_pred ccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 134 RCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 134 ~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.|++|--......+.+||.|+||.+|+..|.+++.++||+|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777664444556669999999999999987577899999998743
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.98 E-value=4.5e-06 Score=67.35 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=39.6
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCC-CCCCcccCcccchh
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNR-NYSCPLCRFDMATA 181 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~-~~~CP~CR~~l~~~ 181 (192)
....|.||.+......+.-.|+|.||..|+..|++.+ +..||.|+...+.+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4789999999544444434699999999999999832 34899999877654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.05 E-value=0.00017 Score=49.36 Aligned_cols=54 Identities=20% Similarity=0.534 Sum_probs=43.5
Q ss_pred ccccccccccccccCCCceEEecC-CCccChHhHHHHHhCCCCCCcccCcccchhhhhh
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDC-LHQFHEKCIACWFDNRNYSCPLCRFDMATAVIES 185 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C-~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~ 185 (192)
..-+-+.|-.|+-...+- +.| .|.+|..|+..+|. .+..||+|+.+|++....+
T Consensus 24 s~~G~~nCKsCWf~~k~L---V~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGL---VECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCSCCCCCCSSCSCCSSE---EECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCSCTT
T ss_pred cccCcccChhhccccCCe---eeecchhhHHHHHHHHHh-hccCCcccCCcCCcceecC
Confidence 445678899999866552 347 59999999999999 9999999999998866443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.04 E-value=0.012 Score=40.37 Aligned_cols=34 Identities=18% Similarity=0.481 Sum_probs=26.0
Q ss_pred ccccccccccc-CCCceEE-ecCCCccChHhHHH-HH
Q 047298 131 EEERCAICLGS-GTGSVIQ-MDCLHQFHEKCIAC-WF 164 (192)
Q Consensus 131 ~~~~C~ICl~~-~~~~~~~-l~C~H~Fh~~CI~~-Wl 164 (192)
++..|+||.+. ...++.. +.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46789999974 4444433 79999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.47 E-value=0.076 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=33.7
Q ss_pred cccccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 129 EEEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
...+..|.||.+. +.++ --.|...||..|+.+.+.. ..=.||.|+...
T Consensus 9 ~~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4456789999863 2232 1278899999999988763 234799997653
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.90 E-value=0.27 Score=46.61 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=46.5
Q ss_pred cccccccccccccCCCceEEecCC-CccChHhHHHHHhCCCCCCcccCcccchhhhhh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCL-HQFHEKCIACWFDNRNYSCPLCRFDMATAVIES 185 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~-H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~~~~ 185 (192)
..+...|||=++.+.+||+ +|-| +.|-..+|.+|+. .+.+||+=|.++......+
T Consensus 888 iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~-~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEE
T ss_pred CcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHh-cCCCCCCCCCCCCcccccc
Confidence 3456779999999999888 8887 5899999999999 7889999999998765443
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.32 E-value=0.36 Score=32.24 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=25.4
Q ss_pred ccccccccccccccCCCceE-EecCCCccChHhHHHH
Q 047298 128 EEEEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACW 163 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~W 163 (192)
....++.|.||-....+... --.|+-+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 34578999999874333221 1147899999999997
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.46 E-value=0.12 Score=33.44 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=33.3
Q ss_pred ccccccccccccccCCCceEEe--cCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQM--DCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
...+...|.||.....+..... .|.-.||..|+..-... ..-.||.|+..+
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3445667999988433322213 78889999999765431 245699997544
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.49 E-value=0.42 Score=28.40 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=27.8
Q ss_pred ccccccccCC-CceEE-ecCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 134 RCAICLGSGT-GSVIQ-MDCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 134 ~C~ICl~~~~-~~~~~-l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
.|.||..... +.++. -.|...||..|+.+=+.. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889987432 22321 178889999999754431 2346999965
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.42 E-value=0.18 Score=31.44 Aligned_cols=50 Identities=20% Similarity=0.570 Sum_probs=33.1
Q ss_pred cccccccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 127 EEEEEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 127 ~~~~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
+.+..+..|.||.+. +.++ --.|...||..|+.+-+.. ..-.||.|+...
T Consensus 4 ~~d~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSCSSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cccCCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345567889999873 2222 1178889999999864441 334699997653
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.24 E-value=0.5 Score=29.36 Aligned_cols=47 Identities=26% Similarity=0.724 Sum_probs=32.3
Q ss_pred ccccccccccccccCCCceEE-ecCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 128 EEEEEERCAICLGSGTGSVIQ-MDCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~-l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
....+..|.||... +.++. -.|.-.||..|+..-+.. ..-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 35567889999873 23321 177889999999975431 3447999965
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.88 E-value=0.35 Score=37.53 Aligned_cols=48 Identities=25% Similarity=0.592 Sum_probs=33.0
Q ss_pred cccccccccccccCCCceEE-ecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 129 EEEEERCAICLGSGTGSVIQ-MDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~-l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
+..+..|.+|.... .+.. -.|...||..|+.+.+.. +.-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45677899998632 2221 178889999999876652 334799998754
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.31 E-value=0.38 Score=36.50 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=32.1
Q ss_pred cccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 131 EEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
.+..|.+|.+. +.+. .-.|.-.||..|+.+-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC--CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999863 2222 1278889999999876652 334699998754
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.14 E-value=1.3 Score=37.62 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=36.2
Q ss_pred cccccccccccCCCceEEecCCCccChHh--HHHHHh-CCCCCCcccCcccchh
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKC--IACWFD-NRNYSCPLCRFDMATA 181 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~C--I~~Wl~-~~~~~CP~CR~~l~~~ 181 (192)
-...|||=......+++...|.|.-|.+- +..+.. ...-.||+|...+...
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 34789988888888999899999854443 333332 2456799999887543
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.97 E-value=0.52 Score=32.73 Aligned_cols=47 Identities=21% Similarity=0.615 Sum_probs=30.6
Q ss_pred cccccccccccccCC-Cc-eEEecCCCccChHhHHHHHhC---CCCCCcccC
Q 047298 129 EEEEERCAICLGSGT-GS-VIQMDCLHQFHEKCIACWFDN---RNYSCPLCR 175 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~-~~-~~~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR 175 (192)
..++..|.||.+... .+ +.--.|...||..|+...+.. ..-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 346789999998432 22 222388999999999877541 233455553
No 86
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.54 E-value=1.4 Score=37.20 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.7
Q ss_pred ccccccccccCCCceEEecCCCccC--hHhHHHHHh-CCCCCCcccCcccchh
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFH--EKCIACWFD-NRNYSCPLCRFDMATA 181 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh--~~CI~~Wl~-~~~~~CP~CR~~l~~~ 181 (192)
...|||=......+++...|.|.-| ..=...+.. ...-.||+|.+.+..+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 4679988888888999889999844 333333333 2456799999988643
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.69 E-value=0.3 Score=29.82 Aligned_cols=49 Identities=22% Similarity=0.555 Sum_probs=31.5
Q ss_pred cccccccccccccccCCCceEEecCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 127 EEEEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 127 ~~~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
+....+..|.||.... .-+.--.|...||..|+.+-+.. ..-.||.|+.
T Consensus 4 g~~~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456678899999842 21221278889999999864431 2335888853
No 88
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=76.23 E-value=0.49 Score=31.03 Aligned_cols=43 Identities=28% Similarity=0.650 Sum_probs=26.0
Q ss_pred ccccccccCCCceEEe--cCCCccChHhHHHHHhC---CC-CCCcccCc
Q 047298 134 RCAICLGSGTGSVIQM--DCLHQFHEKCIACWFDN---RN-YSCPLCRF 176 (192)
Q Consensus 134 ~C~ICl~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~---~~-~~CP~CR~ 176 (192)
.|.||..........+ .|...||..|+.+-|.. .. =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4555555332223323 78889999999876542 22 47999975
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.15 E-value=3.4 Score=30.21 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=33.4
Q ss_pred ccccccccccccccCCCceEEe-cCCCccChHhHHHHHh----------CCCCCCcccCcc
Q 047298 128 EEEEEERCAICLGSGTGSVIQM-DCLHQFHEKCIACWFD----------NRNYSCPLCRFD 177 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l-~C~H~Fh~~CI~~Wl~----------~~~~~CP~CR~~ 177 (192)
.+..+..|.||-+-. .+..- .|...||..||.+-+. ...=.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~GG--~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG--NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCCS--SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCCC--cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 355678999999832 23211 7888999999997652 134469999854
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.68 E-value=1.3 Score=29.85 Aligned_cols=49 Identities=22% Similarity=0.591 Sum_probs=33.7
Q ss_pred cccccccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCcc
Q 047298 127 EEEEEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRFD 177 (192)
Q Consensus 127 ~~~~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~ 177 (192)
.....+..|.+|.... .+. --.|.-.||..|+.+=+.. ..-.||.|+..
T Consensus 20 ~~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3466778999999742 222 1167789999999876542 33469999864
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.32 E-value=6 Score=26.57 Aligned_cols=51 Identities=18% Similarity=0.407 Sum_probs=36.6
Q ss_pred ccccccccccccc----CCCceEEe--cCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 129 EEEEERCAICLGS----GTGSVIQM--DCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 129 ~~~~~~C~ICl~~----~~~~~~~l--~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
......|.||=+. ....+... .|+--.|..|..--.+..+..||-|+..+.
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3356899999992 22223312 666678999988777668889999988775
No 92
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.10 E-value=3 Score=26.43 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=26.8
Q ss_pred ccccccccccccccCCCceEEecC-CCccChHhHHHH
Q 047298 128 EEEEEERCAICLGSGTGSVIQMDC-LHQFHEKCIACW 163 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l~C-~H~Fh~~CI~~W 163 (192)
.+++..-|.||.+.+ .++-+.| +-+||.+|....
T Consensus 4 ~~ee~pWC~ICneDA--tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA--TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC--CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC--eEEecCCCCceehHHHHHHH
Confidence 456778899999963 3666789 789999997765
No 93
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.14 E-value=2.8 Score=26.82 Aligned_cols=45 Identities=27% Similarity=0.726 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceEEe-c--CC-CccChHhHHHHHhC---CCCCCcccCcc
Q 047298 130 EEEERCAICLGSGTGSVIQM-D--CL-HQFHEKCIACWFDN---RNYSCPLCRFD 177 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l-~--C~-H~Fh~~CI~~Wl~~---~~~~CP~CR~~ 177 (192)
.+..-| ||-....+..+.- . |. ..||..|+. +.. ..-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345567 8988544443311 4 65 689999987 331 34579999764
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.08 E-value=1.2 Score=28.52 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=26.5
Q ss_pred ccccccccCCCceEEe--cCCCccChHhHHHHHhC---C-CCCCcccCcc
Q 047298 134 RCAICLGSGTGSVIQM--DCLHQFHEKCIACWFDN---R-NYSCPLCRFD 177 (192)
Q Consensus 134 ~C~ICl~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~---~-~~~CP~CR~~ 177 (192)
.|.||..........+ .|...||..|+.+=+.. + .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 3456665322222223 78889999999854432 2 4469999753
No 95
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.67 E-value=2.3 Score=26.42 Aligned_cols=48 Identities=21% Similarity=0.605 Sum_probs=31.9
Q ss_pred cccccccccccccC---CCceEEe--cCCCccChHhHHHHHh------CCCCCCcccCcc
Q 047298 129 EEEEERCAICLGSG---TGSVIQM--DCLHQFHEKCIACWFD------NRNYSCPLCRFD 177 (192)
Q Consensus 129 ~~~~~~C~ICl~~~---~~~~~~l--~C~H~Fh~~CI~~Wl~------~~~~~CP~CR~~ 177 (192)
..++..|.||.... .+.++ + .|.-.||..|+.+=+. ...-.||.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-ECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999999832 23332 3 7888999999886321 144568888643
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.67 E-value=1.1 Score=29.32 Aligned_cols=43 Identities=23% Similarity=0.666 Sum_probs=28.2
Q ss_pred ccccccccc-CCCceEEe--cCCCccChHhHHHHHhC---C-CCCCcccCc
Q 047298 133 ERCAICLGS-GTGSVIQM--DCLHQFHEKCIACWFDN---R-NYSCPLCRF 176 (192)
Q Consensus 133 ~~C~ICl~~-~~~~~~~l--~C~H~Fh~~CI~~Wl~~---~-~~~CP~CR~ 176 (192)
..|.||... ..+.++ + .|...||..|+.+=+.. . .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888873 233333 3 88889999999854431 2 346998864
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.31 E-value=1.2 Score=31.02 Aligned_cols=43 Identities=23% Similarity=0.597 Sum_probs=27.2
Q ss_pred ccccccccC--CCceEE-ecCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 134 RCAICLGSG--TGSVIQ-MDCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 134 ~C~ICl~~~--~~~~~~-l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
.|.||.... .+.+.. -.|...||..|+.+-+.. ..=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 567776532 222221 178899999999765542 2347999975
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.89 E-value=0.54 Score=31.82 Aligned_cols=49 Identities=16% Similarity=0.457 Sum_probs=31.9
Q ss_pred ccccccccccccccCCCceEEe--cCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 128 EEEEEERCAICLGSGTGSVIQM--DCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
...++..|.||..........+ .|...||..|+.+=+.. ..=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3455678999998432222213 78889999999753331 2345999965
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.83 E-value=1.2 Score=33.98 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=30.5
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
+..|.+|.+.. +-+..-.|.-.||..|+.+=+.. +.-.||.|+..-
T Consensus 2 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCS-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCC-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 56899999742 21221267789999999764431 334699998653
No 100
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.43 E-value=1.8 Score=29.45 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=27.3
Q ss_pred cccccccccCCCceEEe--cCCCccChHhHHHHHhC--CCCCCcccCc
Q 047298 133 ERCAICLGSGTGSVIQM--DCLHQFHEKCIACWFDN--RNYSCPLCRF 176 (192)
Q Consensus 133 ~~C~ICl~~~~~~~~~l--~C~H~Fh~~CI~~Wl~~--~~~~CP~CR~ 176 (192)
..| ||-....+...+. .|.-.||..|+..=... ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8877333322223 78889999998753321 2457999974
No 101
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=66.82 E-value=2.8 Score=31.93 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=30.8
Q ss_pred cccccccccc-CCCc----eEEe-cCCCccChHhHHHH------Hh----CCCCCCcccCcccch
Q 047298 132 EERCAICLGS-GTGS----VIQM-DCLHQFHEKCIACW------FD----NRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~-~~~~----~~~l-~C~H~Fh~~CI~~W------l~----~~~~~CP~CR~~l~~ 180 (192)
+..|+||... ..+. .+.- .|..-||..|+..- +. .....||.|+..-+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3469999882 2222 2222 78899999997421 11 015789999886553
No 102
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=66.80 E-value=2.3 Score=29.16 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=10.8
Q ss_pred ccChHhHHHHHh
Q 047298 154 QFHEKCIACWFD 165 (192)
Q Consensus 154 ~Fh~~CI~~Wl~ 165 (192)
-||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=66.74 E-value=2.3 Score=29.21 Aligned_cols=12 Identities=25% Similarity=1.068 Sum_probs=10.8
Q ss_pred ccChHhHHHHHh
Q 047298 154 QFHEKCIACWFD 165 (192)
Q Consensus 154 ~Fh~~CI~~Wl~ 165 (192)
-||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.22 E-value=2.8 Score=28.29 Aligned_cols=46 Identities=26% Similarity=0.700 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceEEe-c--CC-CccChHhHHHHHhC---CCCCCcccCccc
Q 047298 130 EEEERCAICLGSGTGSVIQM-D--CL-HQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l-~--C~-H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
.+..-| ||........+.- . |. ..||..|+. +.. ..-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344556 9988444432211 4 55 579999987 331 345799997643
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.52 E-value=1.1 Score=28.15 Aligned_cols=46 Identities=26% Similarity=0.680 Sum_probs=31.1
Q ss_pred cccccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCc
Q 047298 129 EEEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
...+..|.||.+. +.++ --.|.-.||..|+.+-+.. ..-.||.|..
T Consensus 5 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4567899999974 2222 1278889999999864431 3346999954
No 106
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.34 E-value=3.1 Score=25.62 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=31.6
Q ss_pred cccccccccccccCC--CceEE-ecCCCccChHhHHHHHh----CCCCCCcccCcc
Q 047298 129 EEEEERCAICLGSGT--GSVIQ-MDCLHQFHEKCIACWFD----NRNYSCPLCRFD 177 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~--~~~~~-l~C~H~Fh~~CI~~Wl~----~~~~~CP~CR~~ 177 (192)
..+...|+||..... ...+. -.|..-||..|+..-.. .....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456778999988432 22221 17888999999764322 145679999653
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.00 E-value=6.2 Score=25.12 Aligned_cols=48 Identities=19% Similarity=0.554 Sum_probs=31.8
Q ss_pred cccccccccccccc---CCCceEEe--cCCCccChHhHHHHHh-CCCCCCcccCc
Q 047298 128 EEEEEERCAICLGS---GTGSVIQM--DCLHQFHEKCIACWFD-NRNYSCPLCRF 176 (192)
Q Consensus 128 ~~~~~~~C~ICl~~---~~~~~~~l--~C~H~Fh~~CI~~Wl~-~~~~~CP~CR~ 176 (192)
...++..|.||.+. ..+.++ + .|.-.||..|+..-.. ...=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll-~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVIL-FCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEE-ECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45568899999983 223333 3 8888999999875322 13346888854
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=62.71 E-value=3.7 Score=29.20 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=23.3
Q ss_pred cccccccccccccCCCceEE---ecCCCccChHhHHH
Q 047298 129 EEEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIAC 162 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~ 162 (192)
+.+...|.+|...+.--.++ -.||++||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 44566899999954432222 28999999999543
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.01 E-value=7.7 Score=26.77 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=27.7
Q ss_pred cccccccccccC-------CCceE-EecCCCccChHhHHH------HHhCCCCCCcccC
Q 047298 131 EEERCAICLGSG-------TGSVI-QMDCLHQFHEKCIAC------WFDNRNYSCPLCR 175 (192)
Q Consensus 131 ~~~~C~ICl~~~-------~~~~~-~l~C~H~Fh~~CI~~------Wl~~~~~~CP~CR 175 (192)
....|.+|+... .++++ -..|+..||..|+.. .+....-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 467899999831 12222 128899999999952 2222444566664
No 110
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.99 E-value=1.4 Score=27.09 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=31.3
Q ss_pred ccccccccccccCCCceE-EecCCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 130 EEEERCAICLGSGTGSVI-QMDCLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~-~l~C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
..+..|.||... +.++ --.|.-.||..|+.+-+.. ..-.||.|+...
T Consensus 3 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 457789999884 2232 1278889999999864431 334699996543
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=61.14 E-value=2.1 Score=33.79 Aligned_cols=44 Identities=27% Similarity=0.647 Sum_probs=24.3
Q ss_pred ccccccccC-CCceE-EecCCCccChHhHHHHHhC---C-CCCCcccCcc
Q 047298 134 RCAICLGSG-TGSVI-QMDCLHQFHEKCIACWFDN---R-NYSCPLCRFD 177 (192)
Q Consensus 134 ~C~ICl~~~-~~~~~-~l~C~H~Fh~~CI~~Wl~~---~-~~~CP~CR~~ 177 (192)
.|.+|.... .+.+. .-.|...||..|+.+=+.. + .=.||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 577777632 22232 1188889999999854432 2 3369999753
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.13 E-value=11 Score=27.02 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=32.2
Q ss_pred ccccccccccccccCCCceEE-ecCCCccChHhHHHHH------h----CCCCCCcccCccc
Q 047298 128 EEEEEERCAICLGSGTGSVIQ-MDCLHQFHEKCIACWF------D----NRNYSCPLCRFDM 178 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~-l~C~H~Fh~~CI~~Wl------~----~~~~~CP~CR~~l 178 (192)
.+..+..|.||-+- +.+.. -.|-..||..||.+-+ . ...=.|++|+-.-
T Consensus 53 ~Dg~~~~C~vC~dG--G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG--GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp TTSCBSSCTTTCCC--SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCCcCeecCCC--CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 34556679999972 22221 1788999999999752 1 1334799997543
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.02 E-value=7.3 Score=25.11 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=31.1
Q ss_pred ccccccccccccC--CCceEE-ecCCCccChHhHHHHHh----CCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSG--TGSVIQ-MDCLHQFHEKCIACWFD----NRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~--~~~~~~-l~C~H~Fh~~CI~~Wl~----~~~~~CP~CR~~l~~~ 181 (192)
.+..-| ||.... ....+. -.|..-||..|+.--.. .....||.|+......
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCC
Confidence 344456 888843 222221 17888999999853211 1456799998765443
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.01 E-value=7 Score=25.92 Aligned_cols=52 Identities=23% Similarity=0.533 Sum_probs=33.3
Q ss_pred cccccccccccccC--CCceEEe--cCCCccChHhHHHHHh-CCCCCCcccCcccch
Q 047298 129 EEEEERCAICLGSG--TGSVIQM--DCLHQFHEKCIACWFD-NRNYSCPLCRFDMAT 180 (192)
Q Consensus 129 ~~~~~~C~ICl~~~--~~~~~~l--~C~H~Fh~~CI~~Wl~-~~~~~CP~CR~~l~~ 180 (192)
.+++..|.||.+.. ......+ .|.-.||..|+..-+. ...-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 45678999999842 2222212 7777999999975332 134469999765443
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=59.91 E-value=4.6 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=23.9
Q ss_pred cccccccccccccCCCceE---EecCCCccChHhHHHH
Q 047298 129 EEEEERCAICLGSGTGSVI---QMDCLHQFHEKCIACW 163 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~---~l~C~H~Fh~~CI~~W 163 (192)
+.+...|.+|...+.--.+ --.||++||..|...+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3455689999985443222 2289999999997654
No 116
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.54 E-value=4.4 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=23.5
Q ss_pred cccccccccccccCCCceEE---ecCCCccChHhHHH
Q 047298 129 EEEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIAC 162 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~ 162 (192)
+.+...|.+|...+.--.++ -.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44566899999854432222 28999999999654
No 117
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.12 E-value=4.9 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=24.2
Q ss_pred cccccccccccccCCCceEE---ecCCCccChHhHHHH
Q 047298 129 EEEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIACW 163 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~W 163 (192)
+.+...|.+|...+.--.++ -.||.+||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45667899999954432222 279999999996543
No 118
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=58.83 E-value=5.8 Score=24.53 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=30.1
Q ss_pred ccccccccccccc-cCCCceEEe--cCCCccChHhHHHHHhCCCC---CCcccCc
Q 047298 128 EEEEEERCAICLG-SGTGSVIQM--DCLHQFHEKCIACWFDNRNY---SCPLCRF 176 (192)
Q Consensus 128 ~~~~~~~C~ICl~-~~~~~~~~l--~C~H~Fh~~CI~~Wl~~~~~---~CP~CR~ 176 (192)
...+...|.||+. .+.+..... -|.-.||.+|--.|-...+. .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4567889999999 444443323 56678888886666431222 3555553
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=58.42 E-value=7.3 Score=26.97 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=30.4
Q ss_pred cccccccccccccccCCCceEEec---CCCccChHhHHHHHhC---CCCCCcccCccc
Q 047298 127 EEEEEEERCAICLGSGTGSVIQMD---CLHQFHEKCIACWFDN---RNYSCPLCRFDM 178 (192)
Q Consensus 127 ~~~~~~~~C~ICl~~~~~~~~~l~---C~H~Fh~~CI~~Wl~~---~~~~CP~CR~~l 178 (192)
....++..|.+|.+ ++.++.=. |...||..|+. +.. +.-.||.|+..+
T Consensus 10 ~~~~~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 10 PKQMHEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CCCSSCSSCTTTCC--CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CcCCCCCCCCcCCC--CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34567788999985 23333223 77899999987 441 233588775443
No 120
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.19 E-value=5.3 Score=26.52 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=31.7
Q ss_pred cccccccccccccCCCceEE---ecCCCccChHhHHHHHh------CCCCCCcccCcccc
Q 047298 129 EEEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIACWFD------NRNYSCPLCRFDMA 179 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~Wl~------~~~~~CP~CR~~l~ 179 (192)
..+...|.+|...+.--.++ -.||.+||..|...... .....|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 44566899999954432222 28999999999764321 02345777755543
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.90 E-value=5.5 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=21.0
Q ss_pred ccccccccccCCCceEE---ecCCCccChHhHH
Q 047298 132 EERCAICLGSGTGSVIQ---MDCLHQFHEKCIA 161 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~ 161 (192)
+..|.+|...+.--.++ -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 45899999854432222 2799999999964
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.53 E-value=2.5 Score=25.96 Aligned_cols=43 Identities=28% Similarity=0.710 Sum_probs=26.6
Q ss_pred cccccccccccCCCceEEe-c--CC-CccChHhHHHHHhC---CCCCCcccCc
Q 047298 131 EEERCAICLGSGTGSVIQM-D--CL-HQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l-~--C~-H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
+..-| ||-....+..+.- . |. .-||..|+. +.. ..-.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 9988544433211 4 65 689999987 331 3456998864
No 123
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=55.42 E-value=3.9 Score=20.84 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=11.1
Q ss_pred CCcccCcccchhhhhh
Q 047298 170 SCPLCRFDMATAVIES 185 (192)
Q Consensus 170 ~CP~CR~~l~~~~~~~ 185 (192)
.||+|.+.++.....+
T Consensus 8 qcpvcqq~mpaahin~ 23 (29)
T 3vhs_A 8 QCPVCQQMMPAAHINS 23 (29)
T ss_dssp ECTTTCCEEEGGGHHH
T ss_pred eChHHHHhCcHHHHHH
Confidence 5888888777655443
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.26 E-value=5.3 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=23.1
Q ss_pred cccccccccccccCCCceEE---ecCCCccChHhHHH
Q 047298 129 EEEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIAC 162 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~ 162 (192)
+.+...|.+|...+.--.++ -.||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44566899999855332222 27999999999543
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.25 E-value=11 Score=23.27 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=26.7
Q ss_pred cccccccccCCCceE--EecCCCccChHhHHHHHhCCCCCCccc
Q 047298 133 ERCAICLGSGTGSVI--QMDCLHQFHEKCIACWFDNRNYSCPLC 174 (192)
Q Consensus 133 ~~C~ICl~~~~~~~~--~l~C~H~Fh~~CI~~Wl~~~~~~CP~C 174 (192)
..|--|.....+..+ --.|++.||.+|=.---. .=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD-SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT-TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHh-hccCCcCC
Confidence 458888884433322 228899999999443222 45579988
No 126
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.16 E-value=3.4 Score=28.76 Aligned_cols=42 Identities=24% Similarity=0.584 Sum_probs=25.5
Q ss_pred cccccccccC------C--Cce-EEecCCCccChHhHHHH------HhCCCCCCccc
Q 047298 133 ERCAICLGSG------T--GSV-IQMDCLHQFHEKCIACW------FDNRNYSCPLC 174 (192)
Q Consensus 133 ~~C~ICl~~~------~--~~~-~~l~C~H~Fh~~CI~~W------l~~~~~~CP~C 174 (192)
+.|.||+... + +.. .-..|+..||..|+..+ .....-.||.|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 4699998722 1 122 22288999999998753 22134456655
No 127
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.96 E-value=3.5 Score=27.40 Aligned_cols=51 Identities=18% Similarity=0.459 Sum_probs=33.7
Q ss_pred cccccccccccccC---CCceEEe-cCCCccChHhHHHHHh-------CCCCCCcccCcccc
Q 047298 129 EEEEERCAICLGSG---TGSVIQM-DCLHQFHEKCIACWFD-------NRNYSCPLCRFDMA 179 (192)
Q Consensus 129 ~~~~~~C~ICl~~~---~~~~~~l-~C~H~Fh~~CI~~Wl~-------~~~~~CP~CR~~l~ 179 (192)
.+.+..|.||.... .+.++.- .|...||..|+.+=+. ...=.||.|+....
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34567899999842 2333311 8889999999986442 13457999965443
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=54.91 E-value=2.6 Score=25.91 Aligned_cols=43 Identities=28% Similarity=0.732 Sum_probs=26.1
Q ss_pred cccccccccccCCCceEEe-c--CC-CccChHhHHHHHhC---CCCCCcccCc
Q 047298 131 EEERCAICLGSGTGSVIQM-D--CL-HQFHEKCIACWFDN---RNYSCPLCRF 176 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l-~--C~-H~Fh~~CI~~Wl~~---~~~~CP~CR~ 176 (192)
+..-| ||.....+..+.- . |. ..||..|+. +.. ..-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8988544433211 4 55 579999987 331 3446888854
No 129
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=54.56 E-value=2.7 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.875 Sum_probs=11.0
Q ss_pred CCCCcccCcccchhh
Q 047298 168 NYSCPLCRFDMATAV 182 (192)
Q Consensus 168 ~~~CP~CR~~l~~~~ 182 (192)
+..||+|+..++...
T Consensus 3 k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMD 17 (28)
T ss_dssp CEECTTSSCEESSHH
T ss_pred cccCccccccCcChH
Confidence 457999998876543
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=53.20 E-value=1.2 Score=31.72 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=27.6
Q ss_pred ccccccccccccCCCceEE---ecCCCccChHhHHHHHhCCCCCCcccCc
Q 047298 130 EEEERCAICLGSGTGSVIQ---MDCLHQFHEKCIACWFDNRNYSCPLCRF 176 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~ 176 (192)
.+...|..|-..+.--.++ -.||.+||..|...... ....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 3456899998854432221 28999999999776655 5667777744
No 131
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=50.82 E-value=3.7 Score=30.51 Aligned_cols=48 Identities=23% Similarity=0.583 Sum_probs=29.2
Q ss_pred cccccccccccccC--CCceEE-ecCCCccChHhHHHHHh----CCCCCCcccCcc
Q 047298 129 EEEEERCAICLGSG--TGSVIQ-MDCLHQFHEKCIACWFD----NRNYSCPLCRFD 177 (192)
Q Consensus 129 ~~~~~~C~ICl~~~--~~~~~~-l~C~H~Fh~~CI~~Wl~----~~~~~CP~CR~~ 177 (192)
..+..-| ||.... .+..+. -.|.-.||..|+..-.. ...-.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 4456678 998842 222221 17788999999852111 145689999753
No 132
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=50.77 E-value=8.4 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=19.8
Q ss_pred cccccccccccccC-CC-ceE-Ee-cCCCccChHhHH
Q 047298 129 EEEEERCAICLGSG-TG-SVI-QM-DCLHQFHEKCIA 161 (192)
Q Consensus 129 ~~~~~~C~ICl~~~-~~-~~~-~l-~C~H~Fh~~CI~ 161 (192)
......|++|.... .+ ..+ -- .|.--||..|+-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45678999999943 22 222 12 577899999974
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.54 E-value=3.1 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=17.0
Q ss_pred ecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 149 MDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 149 l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
..||+.|. .. +. ....||.|+.+-..
T Consensus 71 ~~CG~~F~----~~-~~-kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVFK----AE-IN-IPSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBCC----CC-SS-CCSSCSSSCCCCBC
T ss_pred hhCcCeec----cc-CC-CCCCCcCCCCCccC
Confidence 57999991 11 12 55789999875443
No 134
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.07 E-value=9.7 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=29.0
Q ss_pred cccccccccccc---C-CCceEEecCCCccChHhHHHHHhC-CCCCCcccCc
Q 047298 130 EEEERCAICLGS---G-TGSVIQMDCLHQFHEKCIACWFDN-RNYSCPLCRF 176 (192)
Q Consensus 130 ~~~~~C~ICl~~---~-~~~~~~l~C~H~Fh~~CI~~Wl~~-~~~~CP~CR~ 176 (192)
..+..|.+|... . .....-..|.|.+|..|-. |..+ ..-.|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 357899999992 2 2334445999999999973 3321 1224666654
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.83 E-value=6.1 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=22.0
Q ss_pred cccccccccccCCCceEE---ecCCCccChHhHHH
Q 047298 131 EEERCAICLGSGTGSVIQ---MDCLHQFHEKCIAC 162 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~ 162 (192)
++..|.+|...+.--.++ -.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 357999998854432221 27999999999543
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.11 E-value=7.2 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=22.1
Q ss_pred cccccccccccCCCceEE---ecCCCccChHhHHH
Q 047298 131 EEERCAICLGSGTGSVIQ---MDCLHQFHEKCIAC 162 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~---l~C~H~Fh~~CI~~ 162 (192)
++..|.+|...+.--.++ -.||.+||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456899999844332222 28999999999654
No 137
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.06 E-value=4.3 Score=25.13 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=26.5
Q ss_pred cccccccccccCCCceEEe-c--CC-CccChHhHHHHHh-CCCCCCcccCc
Q 047298 131 EEERCAICLGSGTGSVIQM-D--CL-HQFHEKCIACWFD-NRNYSCPLCRF 176 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l-~--C~-H~Fh~~CI~~Wl~-~~~~~CP~CR~ 176 (192)
+..-| ||-....+..+.- . |. .-||..|+.---. ...-.||.|+.
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34456 9988544433211 4 55 7999999872110 03457999864
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.58 E-value=5.6 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=7.1
Q ss_pred CCcccCcccchh
Q 047298 170 SCPLCRFDMATA 181 (192)
Q Consensus 170 ~CP~CR~~l~~~ 181 (192)
.||+|.+.+...
T Consensus 7 iCP~C~~~l~s~ 18 (34)
T 3mjh_B 7 ICPQCMKSLGSA 18 (34)
T ss_dssp ECTTTCCEESSH
T ss_pred CCcHHHHHcCCH
Confidence 477776665443
No 139
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=45.68 E-value=26 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=25.7
Q ss_pred cccccccccccccCCC-ceEEecC----CCccChHhHHHHHhC
Q 047298 129 EEEEERCAICLGSGTG-SVIQMDC----LHQFHEKCIACWFDN 166 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~-~~~~l~C----~H~Fh~~CI~~Wl~~ 166 (192)
......|.+|.+...+ .. ..| .|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHF--VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHF--VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTS--EECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCce--eeCCCccCCeeeccccHHHHHh
Confidence 3456789999994333 23 345 699999998888763
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.18 E-value=8.5 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=22.3
Q ss_pred ccccccccccccC--C-C-ceEEecCCCccChHhHH
Q 047298 130 EEEERCAICLGSG--T-G-SVIQMDCLHQFHEKCIA 161 (192)
Q Consensus 130 ~~~~~C~ICl~~~--~-~-~~~~l~C~H~Fh~~CI~ 161 (192)
.++..|.+|.... - . ...-..|.|.+|.+|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3578999999932 2 2 22334889999999955
No 141
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.86 E-value=4.8 Score=34.04 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccccccccccccCCCceE---EecCCCccChHhHHHHHhC------CCCCCcccCccc
Q 047298 130 EEEERCAICLGSGTGSVI---QMDCLHQFHEKCIACWFDN------RNYSCPLCRFDM 178 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~---~l~C~H~Fh~~CI~~Wl~~------~~~~CP~CR~~l 178 (192)
.+...|.+|...+.--.+ .-.||++||..|...+... ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345689999984432222 2389999999998765420 234577775443
No 142
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=43.47 E-value=1.7 Score=28.35 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=15.5
Q ss_pred cCCCccChHhHHHHHhCCCCCCc
Q 047298 150 DCLHQFHEKCIACWFDNRNYSCP 172 (192)
Q Consensus 150 ~C~H~Fh~~CI~~Wl~~~~~~CP 172 (192)
.|++.||..|...| ....|.
T Consensus 55 ~C~~~FC~~C~~~w---H~~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAY---HEGECS 74 (80)
T ss_dssp CCSCCEETTTTEEC---CSSCSS
T ss_pred CCCCeeccccCccc---cCCccc
Confidence 58999999999988 334453
No 143
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.87 E-value=25 Score=22.06 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=29.3
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.....|.-|-....+..+ ..-+..||..| ..|-.|+..|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFV-KLRDRHRHPEC---------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCE-ECSSCEECTTT---------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEE-EECcceeCcCc---------CeeCCCCCCCCC
Confidence 446789999994444433 45678999988 468889888753
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.66 E-value=26 Score=21.37 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=23.0
Q ss_pred cccccccccc-CCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGS-GTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~-~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|..|-.. .........=+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC---------CcccccCCcCC
Confidence 4577778772 222222234467788776 45777777764
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.35 E-value=22 Score=26.34 Aligned_cols=48 Identities=21% Similarity=0.634 Sum_probs=31.8
Q ss_pred ccccccccccccccCCCceEEe---cCCCccChHhHHHHHhC---------CCCCCcccCcc
Q 047298 128 EEEEEERCAICLGSGTGSVIQM---DCLHQFHEKCIACWFDN---------RNYSCPLCRFD 177 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~~l---~C~H~Fh~~CI~~Wl~~---------~~~~CP~CR~~ 177 (192)
.+..+.-|.||-+- +.++.- .|...||..||..++.. ..=.|=+|.-.
T Consensus 75 eDG~~~yC~wC~~G--g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 75 DDGYQSYCTICCGG--REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TTSSBSSCTTTSCC--SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCcceeeEecCC--CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 45567789999872 233311 48889999999998752 12247777543
No 146
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.26 E-value=28 Score=22.44 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=29.0
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.....|+-|-....+..+ ..-+..||..| ..|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~~~v-~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFL-VALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCCSCEE-EETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCCccCCCEecceEE-EECCccccccC---------CccCCCCCCCCC
Confidence 446789999884444443 45678899877 568888887764
No 147
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.12 E-value=22 Score=22.03 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=27.7
Q ss_pred cccccccccccCC-CceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGT-GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~-~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
....|+.|-.... ...+ ..-+..||..| ..|..|+..|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKV-SSLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEE-EETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEE-EECCeEeeCCC---------CCCCCCCCccCC
Confidence 4568999998333 3333 45677899877 568888888764
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=32 Score=20.83 Aligned_cols=39 Identities=18% Similarity=0.476 Sum_probs=25.6
Q ss_pred ccccccccccCC--CceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGT--GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~--~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|.-|-.... +.++ ..-+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-EECccccCccc---------CeECCCCCcCCC
Confidence 457888888333 2332 35577888877 467888777754
No 149
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.50 E-value=38 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.492 Sum_probs=29.2
Q ss_pred ccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.....|.-|-....+..+ ..-+..||..| ..|-.|+..|..
T Consensus 23 ~~~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVV-KARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCCE-ESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccEE-EECCceECccC---------CEecCCCCCCCC
Confidence 445789999994444443 45678999988 568889888764
No 150
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=32 Score=20.82 Aligned_cols=40 Identities=28% Similarity=0.570 Sum_probs=25.1
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
....|.-|-....+..+ ..-+..||.+| ..|-.|+..|..
T Consensus 4 ~~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVI-KAMNNSWHPEC---------FRCDLCQEVLAD 43 (70)
T ss_dssp CSSBCSSSCCBCCSCCE-EETTEEECTTT---------SBCSSSCCBCSS
T ss_pred CCCcCccCCCEecceEE-EECcccccccC---------CEeCCCCCcCCC
Confidence 34578888873333332 34566788877 457778777654
No 151
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.41 E-value=32 Score=21.17 Aligned_cols=42 Identities=19% Similarity=0.520 Sum_probs=28.7
Q ss_pred ccccccccccccC--CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 130 EEEERCAICLGSG--TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 130 ~~~~~C~ICl~~~--~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
.....|+-|-... .+.+. ..-+..||..| ..|-.|+..|...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCE-EETTEEECTTT---------CCCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEE-EeCccEecccc---------CeECCCCCCCCCC
Confidence 3467899999933 23333 34577899877 5688888887654
No 152
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.81 E-value=18 Score=18.84 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=15.7
Q ss_pred ccccccccccCCCceEEecCCCccChHh
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKC 159 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~C 159 (192)
.+.|+.|-......-....=+..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEEECCeEecccC
Confidence 3578888872221122134467888877
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=33.43 E-value=23 Score=20.68 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=24.0
Q ss_pred ccccccccCCCc--eEEe--cCCCccChHhHHHHH---hCCCCCCcccC
Q 047298 134 RCAICLGSGTGS--VIQM--DCLHQFHEKCIACWF---DNRNYSCPLCR 175 (192)
Q Consensus 134 ~C~ICl~~~~~~--~~~l--~C~H~Fh~~CI~~Wl---~~~~~~CP~CR 175 (192)
.|.+|.....+. .+.- .|.--||..|+.--. ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467787733322 2211 377799999965321 11567899885
No 154
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.07 E-value=38 Score=21.26 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=29.2
Q ss_pred cccccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 129 EEEEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
......|+-|-....+..+ ..-+..||..| .+|-.|+..|...
T Consensus 12 ~~~~~~C~~C~~~I~~~~v-~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQPL-IFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCCBCTTTCCBCCSCCC-CCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred ccCCCCCccCCCEecceEE-EECcceeCCCC---------CEeCCCCCccCCC
Confidence 3446789999884334332 35577899877 5688898887643
No 155
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.03 E-value=44 Score=20.10 Aligned_cols=38 Identities=21% Similarity=0.555 Sum_probs=24.1
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|+.|-.......+ ..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGV-TYREQPWHKEC---------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEE-ESSSSEEETTT---------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccceE-EECccccCCCC---------CccCCCCCcCC
Confidence 4568888773333332 34567888776 45777877774
No 156
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.69 E-value=3.2 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.923 Sum_probs=12.8
Q ss_pred cCCCccChHhHHHH
Q 047298 150 DCLHQFHEKCIACW 163 (192)
Q Consensus 150 ~C~H~Fh~~CI~~W 163 (192)
.|++.||..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 49999999999988
No 157
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=31.50 E-value=32 Score=23.86 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=29.0
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
....|+-|-....+..+...-+..||..| ..|-.|+..|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 35789999994444433245678999988 56999998886
No 158
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=33 Score=21.71 Aligned_cols=41 Identities=22% Similarity=0.450 Sum_probs=27.5
Q ss_pred ccccccccccccC-CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 130 EEEERCAICLGSG-TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 130 ~~~~~C~ICl~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
.....|..|-... ....+ ..-+..||..| ..|-.|+..|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v-~a~~~~wH~~C---------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERL-CVNGHFFHRSC---------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBC-CBTTBCCBTTT---------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEE-EECCCeeCCCc---------CEEcCCCCCcCC
Confidence 3567899999933 23232 34577899988 457888877754
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.98 E-value=50 Score=19.73 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=27.8
Q ss_pred cccccccccccCC-CceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 131 EEERCAICLGSGT-GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 131 ~~~~C~ICl~~~~-~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
....|.-|-.... .......=+..||..| ..|-.|...|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~C---------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC---------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTT---------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCC---------CcccCCCCCCCCC
Confidence 4568999998333 3222124567899877 4688888887654
No 160
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.56 E-value=37 Score=20.61 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=25.7
Q ss_pred ccccccccccCCC----ceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGSGTG----SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~~~~----~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|+-|-....+ .++ ..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-ECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-EECCcccCccc---------CEeccCCCcCC
Confidence 4678888883332 333 34678899877 56888888775
No 161
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.29 E-value=3 Score=34.40 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceEEe---cCC--CccChHhHHHHHhCCCCCCcccCcc
Q 047298 130 EEEERCAICLGSGTGSVIQM---DCL--HQFHEKCIACWFDNRNYSCPLCRFD 177 (192)
Q Consensus 130 ~~~~~C~ICl~~~~~~~~~l---~C~--H~Fh~~CI~~Wl~~~~~~CP~CR~~ 177 (192)
.....||+|=....-.++.. .=| +.+|.-|-..|-- .+..||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 45689999998322112211 112 4566677778866 88899999664
No 162
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.06 E-value=29 Score=23.59 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=29.5
Q ss_pred cccccccccc--CCCceEEe--cCCCccChHhHHHHH---------hCCCCCCcccCccc
Q 047298 132 EERCAICLGS--GTGSVIQM--DCLHQFHEKCIACWF---------DNRNYSCPLCRFDM 178 (192)
Q Consensus 132 ~~~C~ICl~~--~~~~~~~l--~C~H~Fh~~CI~~Wl---------~~~~~~CP~CR~~l 178 (192)
...|.||... ..+..+.- .|.--||..|+.--. ......||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5689999994 22222222 577899999975211 01345799997654
No 163
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.03 E-value=41 Score=20.03 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=26.7
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-....+..+ ..=+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVV-NAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEE-CCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEE-EECccccccCc---------CEECCCCCCCCC
Confidence 4678888883334432 45577889877 568888887754
No 164
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.77 E-value=26 Score=21.64 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=17.8
Q ss_pred cccccccccCCCceEEecCCCccCh-HhHHHHHhCCCCCCcccC
Q 047298 133 ERCAICLGSGTGSVIQMDCLHQFHE-KCIACWFDNRNYSCPLCR 175 (192)
Q Consensus 133 ~~C~ICl~~~~~~~~~l~C~H~Fh~-~CI~~Wl~~~~~~CP~CR 175 (192)
..|..|-...........=+..||. .|..+.+ ...|-.|.
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~ 68 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRG 68 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCC
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcC
Confidence 4455555522221111233456666 4655442 24465554
No 165
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.46 E-value=11 Score=23.90 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=12.7
Q ss_pred HHHhCCCCCCcccCcccchh
Q 047298 162 CWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 162 ~Wl~~~~~~CP~CR~~l~~~ 181 (192)
+|+. .--.||.|+.++...
T Consensus 3 ~~LL-eiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 3 TKLL-DILACPICKGPLKLS 21 (69)
T ss_dssp CCGG-GTCCCTTTCCCCEEC
T ss_pred hHHH-hheeCCCCCCcCeEe
Confidence 3444 556799998887643
No 166
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.20 E-value=35 Score=20.69 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=24.3
Q ss_pred ccccccccccCC--CceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGT--GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~--~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-.... +.++ ..=+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccC---------CcccccCCccCC
Confidence 457888888333 2232 34567788776 457778777654
No 167
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.67 E-value=43 Score=20.09 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=23.1
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|+-|-....+..+ ..-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGI-TYQDQPWHADC---------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCE-EETTEEECTTT---------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceE-EECccccccCc---------CEECCCCCCCC
Confidence 4567777773333332 34466788766 45777777765
No 168
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.52 E-value=10 Score=23.90 Aligned_cols=19 Identities=11% Similarity=0.023 Sum_probs=13.3
Q ss_pred HHHhCCCCCCcccCcccchh
Q 047298 162 CWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 162 ~Wl~~~~~~CP~CR~~l~~~ 181 (192)
+|+. .--.||+|+.++...
T Consensus 5 ~~LL-eiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLL-EVLACPKDKGPLRYL 23 (67)
T ss_dssp GGGT-CCCBCTTTCCBCEEE
T ss_pred HHHH-HHhCCCCCCCcCeEe
Confidence 4555 566799999887653
No 169
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.34 E-value=48 Score=20.64 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=26.8
Q ss_pred ccccccccccCC--CceEEecCCCccChHhHHHHHhCCCCCCcccCcccchh
Q 047298 132 EERCAICLGSGT--GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATA 181 (192)
Q Consensus 132 ~~~C~ICl~~~~--~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~ 181 (192)
...|+.|-.... +.++ ..=+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECcccccccc---------CchhhCCCccCCC
Confidence 468888888333 3333 34577899877 5688888877653
No 170
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.22 E-value=40 Score=21.25 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=27.3
Q ss_pred ccccccccccccCC-CceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 130 EEEERCAICLGSGT-GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 130 ~~~~~C~ICl~~~~-~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
.....|+-|-.... ...+ ..-+..||..| ..|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v-~a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSL-LALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCE-EETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEE-EECCccccccc---------CCcCcCCCCcC
Confidence 34678999998332 3332 34577899877 56888888775
No 171
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.76 E-value=44 Score=20.60 Aligned_cols=39 Identities=21% Similarity=0.537 Sum_probs=25.3
Q ss_pred ccccccccccCCC---ceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGSGTG---SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~~~~---~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|+.|-....+ ......-+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCC
Confidence 4578888883332 122235577889888 45888877775
No 172
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.57 E-value=55 Score=20.08 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=22.8
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccc
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMA 179 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~ 179 (192)
...|+-|-....+..+ ..-+..||.+| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~v-~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVL-EAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCB-CCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeE-EeCCCCCCCCc---------CEeCCCCCCCC
Confidence 3567777773333332 34567788766 45777776665
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.54 E-value=50 Score=21.18 Aligned_cols=40 Identities=20% Similarity=0.539 Sum_probs=25.0
Q ss_pred cccccccccccCC-CceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGT-GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~-~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
....|+-|-.... ...+ ..-+..||..| ..|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~C---------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL-LANQQVFHISC---------FRCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE-ECSSSEEETTT---------CBCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeE-EECCCEECCCC---------CeeCCCCCCCCC
Confidence 3567888888332 2332 45667888877 457777766654
No 174
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.09 E-value=59 Score=20.36 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=27.8
Q ss_pred ccccccccccCCC-ceEE-ecCCCccChHhHHHHH--------hCCCCCCcccCcc
Q 047298 132 EERCAICLGSGTG-SVIQ-MDCLHQFHEKCIACWF--------DNRNYSCPLCRFD 177 (192)
Q Consensus 132 ~~~C~ICl~~~~~-~~~~-l~C~H~Fh~~CI~~Wl--------~~~~~~CP~CR~~ 177 (192)
..-| ||.....+ ..+. -.|..-||..|+.--. ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4456 88884332 2221 1788899999984211 1156789999653
No 175
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.91 E-value=49 Score=20.60 Aligned_cols=39 Identities=26% Similarity=0.653 Sum_probs=26.5
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-....+.++ ..-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~v-~a~~~~wH~~C---------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVV-SALGKTYHPDC---------FVCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCSCCE-EETTEEECTTT---------SSCSSSCCCCCS
T ss_pred CCcCccccCEeccceE-EECCceeCccC---------CccccCCCCCCC
Confidence 3589999884334333 35677899877 568888877754
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.35 E-value=52 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.564 Sum_probs=32.2
Q ss_pred ccccccccccccccCCCceE-Ee--cCCCccChHhHHHHHhC---------CCCCCcccCcc
Q 047298 128 EEEEEERCAICLGSGTGSVI-QM--DCLHQFHEKCIACWFDN---------RNYSCPLCRFD 177 (192)
Q Consensus 128 ~~~~~~~C~ICl~~~~~~~~-~l--~C~H~Fh~~CI~~Wl~~---------~~~~CP~CR~~ 177 (192)
.+..+.-|.+|-+-. .+. .- .|...||..||..++.. ..=.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~Gg--~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSGE--TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCCS--SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCCC--eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 355667899998732 222 12 68899999999999831 23368888654
No 177
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=24.33 E-value=43 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred cccccccccccCCCceEEec--CCCccChH
Q 047298 131 EEERCAICLGSGTGSVIQMD--CLHQFHEK 158 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~--C~H~Fh~~ 158 (192)
....|..|......--.-|. |||++|.+
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 35689999964333234578 99999954
No 178
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.10 E-value=20 Score=21.88 Aligned_cols=18 Identities=22% Similarity=0.839 Sum_probs=11.7
Q ss_pred HHhCCCCCCcccCcccch
Q 047298 163 WFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 163 Wl~~~~~~CP~CR~~l~~ 180 (192)
|+......||.|+..|..
T Consensus 1 wi~~~~k~CP~C~~~Iek 18 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEK 18 (60)
T ss_dssp CCCCCCCCCTTTCCCCSS
T ss_pred CccccceECcCCCCeeEe
Confidence 344345679988887754
No 179
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=24.03 E-value=79 Score=20.61 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=22.5
Q ss_pred ccccccccccccC-CCceEEe--cCCCccChHhHHHH
Q 047298 130 EEEERCAICLGSG-TGSVIQM--DCLHQFHEKCIACW 163 (192)
Q Consensus 130 ~~~~~C~ICl~~~-~~~~~~l--~C~H~Fh~~CI~~W 163 (192)
.-...|.||-+.. +.-+.-- .|.-.||..|...-
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 3457899998743 3322211 57789999998763
No 180
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.88 E-value=53 Score=20.39 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-....+..+ ..-+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFM-VAGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCB-CCTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEE-EECCceecccc---------CCccCCCCccCC
Confidence 3578888883334332 34577888877 568888888754
No 181
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=51 Score=20.54 Aligned_cols=40 Identities=20% Similarity=0.568 Sum_probs=26.8
Q ss_pred cccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 131 EEERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 131 ~~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
....|+-|-....+.++ ..-+..||..| .+|..|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILDRIL-RAMGKAYHPGC---------FTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCSCCE-EETTEEECTTT---------CBCSSSCCBCTT
T ss_pred CCCccccCCCeecceeE-EECCccccHHh---------cCcccCCCccCC
Confidence 45678888884334332 34577888877 568888887753
No 182
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.36 E-value=86 Score=21.01 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=6.8
Q ss_pred CCccChHhHHHHHh
Q 047298 152 LHQFHEKCIACWFD 165 (192)
Q Consensus 152 ~H~Fh~~CI~~Wl~ 165 (192)
+..||..|-.+-+.
T Consensus 52 g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 52 GRKLCRRDYLRLGG 65 (114)
T ss_dssp TBCCCHHHHHHHHT
T ss_pred CeeechHHHHHHhC
Confidence 34555555544443
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.87 E-value=23 Score=22.27 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=22.4
Q ss_pred ccccccccccC-CCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSG-TGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~-~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-... ....+ ..-+..||..| ..|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV-QCDGRSFHRCC---------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEE-EETTEEEESSS---------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeE-EeCCccccccc---------CccCCCCCCCCC
Confidence 45788887733 23332 34566777766 346677666643
No 184
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.62 E-value=58 Score=22.21 Aligned_cols=49 Identities=6% Similarity=-0.084 Sum_probs=30.4
Q ss_pred cccccccccCCC--ceEEecCCCccChHhHHHHHhCCCCCCcccCcccchhh
Q 047298 133 ERCAICLGSGTG--SVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMATAV 182 (192)
Q Consensus 133 ~~C~ICl~~~~~--~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~~~ 182 (192)
..|..|-....+ ......=+..||..|..+.+. .+..|-.|...|....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCchh
Confidence 345555553321 112234466888899888766 5458999998887543
No 185
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.50 E-value=49 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=7.0
Q ss_pred CCccChHhHHHHHh
Q 047298 152 LHQFHEKCIACWFD 165 (192)
Q Consensus 152 ~H~Fh~~CI~~Wl~ 165 (192)
+..||..|..+.+.
T Consensus 57 g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 57 SDIVCEQDIYEWTK 70 (123)
T ss_dssp SSEEEGGGHHHHHH
T ss_pred CEEEcHHHhHHHhc
Confidence 44555555555443
No 186
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.27 E-value=33 Score=22.80 Aligned_cols=44 Identities=23% Similarity=0.648 Sum_probs=26.1
Q ss_pred cccccccccccccCCCceEEe-cCC---CccChHhHHHHHhC---CCCCCcc-cC
Q 047298 129 EEEEERCAICLGSGTGSVIQM-DCL---HQFHEKCIACWFDN---RNYSCPL-CR 175 (192)
Q Consensus 129 ~~~~~~C~ICl~~~~~~~~~l-~C~---H~Fh~~CI~~Wl~~---~~~~CP~-CR 175 (192)
..+..-| ||-....+..+.- .|. .-||..|+. +.. ..-.||. |+
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 3445567 9998444443211 433 589999985 221 3457999 86
No 187
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=77 Score=19.49 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=25.4
Q ss_pred ccccccccccCCCceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGTGSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+.|-.......+ ..=+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~v-~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQGGV-TYRDQPWHREC---------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSCCE-ESSSSEECTTT---------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCcEE-EECCchhhhhh---------CCcccCCCcCCC
Confidence 4578888883333332 35577888877 468888887753
No 188
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=63 Score=19.76 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=26.9
Q ss_pred ccccccccccCC----CceEEecCCCccChHhHHHHHhCCCCCCcccCcccch
Q 047298 132 EERCAICLGSGT----GSVIQMDCLHQFHEKCIACWFDNRNYSCPLCRFDMAT 180 (192)
Q Consensus 132 ~~~C~ICl~~~~----~~~~~l~C~H~Fh~~CI~~Wl~~~~~~CP~CR~~l~~ 180 (192)
...|+-|-.... .......=+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT---------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc---------CEehhcCCCCCC
Confidence 467888888333 2222234577899887 568899888864
No 189
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.18 E-value=11 Score=23.77 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=10.4
Q ss_pred CCCCCcccCcccchh
Q 047298 167 RNYSCPLCRFDMATA 181 (192)
Q Consensus 167 ~~~~CP~CR~~l~~~ 181 (192)
.--.||+|+.++...
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 7 DILVCPVTKGRLEYH 21 (68)
T ss_dssp CCCBCSSSCCBCEEE
T ss_pred hheECCCCCCcCeEe
Confidence 445788888877543
No 190
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.17 E-value=28 Score=23.54 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=6.5
Q ss_pred CCCcccCcccch
Q 047298 169 YSCPLCRFDMAT 180 (192)
Q Consensus 169 ~~CP~CR~~l~~ 180 (192)
..||+|..++..
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 346666555543
Done!