BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047299
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HGC|A Chain A, Crystal Structure Of A Functional Acid Sensing Ion Channel
In The Desensitized State
pdb|3IJ4|A Chain A, Cesium Sites In The Crystal Structure Of A Functional Acid
Sensing Ion Channel In The Desensitized State
Length = 465
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 20/105 (19%)
Query: 296 VTRYG----YMDVRNESSAKDLADAFDNEESGPGEDVMIHEEKQKEDVGKEI---ETIEK 348
VTRYG + + +++SAK LA ++ E GE++++ D+ E ETIE+
Sbjct: 367 VTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVL------DIFFEALNYETIEQ 420
Query: 349 AWQAGVVHLIGENEVVAAKGVGIAKRI-----MIDYAYSFLKKNL 388
V L+G ++ G+ I I + DYAY +K L
Sbjct: 421 KKAYEVAGLLG--DIGGQMGLFIGASILTVLELFDYAYEVIKHRL 463
>pdb|2QTS|A Chain A, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|B Chain B, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|C Chain C, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|D Chain D, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|E Chain E, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|F Chain F, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
Length = 438
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 296 VTRYG----YMDVRNESSAKDLADAFDNEESGPGEDVMIHEEKQKEDVGKEI---ETIEK 348
VTRYG + + +++SAK LA ++ E GE++++ D+ E ETIE+
Sbjct: 343 VTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVL------DIFFEALNYETIEQ 396
Query: 349 AWQAGVVHLIGENEVVAAKGVGIAKRI-----MIDYAYSFLK 385
V L+G ++ G+ I I + DYAY +K
Sbjct: 397 KKAYEVAGLLG--DIGGQMGLFIGASILTVLELFDYAYEVIK 436
>pdb|4FZ0|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|B Chain B, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ0|C Chain C, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At Low Ph
pdb|4FZ1|A Chain A, Crystal Structure Of Acid-Sensing Ion Channel In Complex
With Psalmotoxin 1 At High Ph
Length = 450
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 296 VTRYG----YMDVRNESSAKDLADAFDNEESGPGEDVMIHEEKQKEDVGKEI---ETIEK 348
VTRYG + + +++SAK LA ++ E GE++++ D+ E ETIE+
Sbjct: 355 VTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVL------DIFFEALNYETIEQ 408
Query: 349 AWQAGVVHLIGENEVVAAKGVGIAKRI-----MIDYAYSFLK 385
V L+G ++ G+ I I + DYAY +K
Sbjct: 409 KKAYEVAGLLG--DIGGQMGLFIGASILTVLELFDYAYEVIK 448
>pdb|3S3W|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3W|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 2.6 A
Resolution And Ph 7.5
pdb|3S3X|A Chain A, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|B Chain B, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
pdb|3S3X|C Chain C, Structure Of Chicken Acid-Sensing Ion Channel 1 At 3.0 A
Resolution In Complex With Psalmotoxin
Length = 459
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 296 VTRYG----YMDVRNESSAKDLADAFDNEESGPGEDVMIHEEKQKEDVGKEI---ETIEK 348
VTRYG + + +++SAK LA ++ E GE++++ D+ E ETIE+
Sbjct: 364 VTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVL------DIFFEALNYETIEQ 417
Query: 349 AWQAGVVHLIGENEVVAAKGVGIAKRI-----MIDYAYSFLK 385
V L+G ++ G+ I I + DYAY +K
Sbjct: 418 KKAYEVAGLLG--DIGGQMGLFIGASILTVLELFDYAYEVIK 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,562,874
Number of Sequences: 62578
Number of extensions: 448360
Number of successful extensions: 1139
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)