Query 047299
Match_columns 411
No_of_seqs 141 out of 822
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bm3_A Type 2 cohesin, scaffol 23.5 22 0.00076 32.0 0.7 18 88-105 36-56 (166)
2 3kcp_B Cellulosome anchoring p 22.3 24 0.00083 32.2 0.7 14 92-105 55-68 (187)
3 1nrp_R Receptor based peptide 16.7 41 0.0014 21.1 0.7 17 166-182 4-20 (26)
4 3bwz_A Cellulosomal scaffoldin 16.5 39 0.0013 30.8 0.7 13 92-104 41-53 (181)
5 3ghp_A Cellulosomal scaffoldin 16.4 29 0.00099 32.6 -0.1 14 92-105 46-59 (227)
6 2edj_A Roundabout homolog 2; K 15.0 1.2E+02 0.0042 22.2 3.2 27 276-302 60-86 (100)
7 3hbe_X Class IV chitinase CHIA 13.8 25 0.00087 32.6 -1.3 72 102-183 51-137 (204)
8 2od6_A Hypothetical protein; m 12.6 2.3E+02 0.0078 22.9 4.2 31 279-310 46-76 (110)
9 1tyj_A Cellulosomal scaffoldin 12.4 49 0.0017 29.9 0.2 14 92-105 37-50 (170)
10 3l8q_A Cellulosomal scaffoldin 10.9 52 0.0018 32.7 -0.1 33 70-105 183-222 (350)
No 1
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=23.45 E-value=22 Score=32.01 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.0
Q ss_pred hhhh---hccCcceeeecChH
Q 047299 88 VGGI---KKATSTITNAINPW 105 (411)
Q Consensus 88 i~~~---i~~~p~vl~A~~P~ 105 (411)
+++. |++||+||+|.||-
T Consensus 36 fAGYQvNIKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 36 FAGFQVNIVYDPKVLMAVDPE 56 (166)
T ss_dssp EEEEEEEEECCTTTEEEECTT
T ss_pred ccceEEEEEECccceEeecCC
Confidence 3555 99999999999993
No 2
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=22.26 E-value=24 Score=32.24 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=13.1
Q ss_pred hccCcceeeecChH
Q 047299 92 KKATSTITNAINPW 105 (411)
Q Consensus 92 i~~~p~vl~A~~P~ 105 (411)
|++||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 99999999999995
No 3
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.73 E-value=41 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=14.5
Q ss_pred ccccccCcccccccccc
Q 047299 166 ASVLVKHPEYASDALYK 182 (411)
Q Consensus 166 ~A~ll~~p~~~~n~f~~ 182 (411)
-++|++||++.-.|||.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999889985
No 4
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=16.52 E-value=39 Score=30.79 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=12.2
Q ss_pred hccCcceeeecCh
Q 047299 92 KKATSTITNAINP 104 (411)
Q Consensus 92 i~~~p~vl~A~~P 104 (411)
|++||+||+|+||
T Consensus 41 IKYDP~VLQaV~~ 53 (181)
T 3bwz_A 41 MKYDPAVLQPVTS 53 (181)
T ss_dssp EECCTTTEEEECT
T ss_pred cccChhHeeeecC
Confidence 9999999999998
No 5
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=16.43 E-value=29 Score=32.60 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=12.9
Q ss_pred hccCcceeeecChH
Q 047299 92 KKATSTITNAINPW 105 (411)
Q Consensus 92 i~~~p~vl~A~~P~ 105 (411)
|++||+||+|+||.
T Consensus 46 IKYDP~vLQaVnp~ 59 (227)
T 3ghp_A 46 IKYDPTVLQAVNPK 59 (227)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeChhheecccCC
Confidence 99999999999994
No 6
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.95 E-value=1.2e+02 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCCEEEEEEEEeec
Q 047299 276 LEERFIFCKLEPKKINMYRCVTRYGYM 302 (411)
Q Consensus 276 ~~eRf~v~rlg~k~~g~yRvv~RYGYm 302 (411)
.+..+.+..+...+.|.|+|.++-...
T Consensus 60 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g 86 (100)
T 2edj_A 60 EQGTLQIKNLRISDTGTYTCVATSSSG 86 (100)
T ss_dssp TTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred CCCEEEEccCCcccCEEEEEEEEcCCC
Confidence 455688889998899999999986544
No 7
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=13.77 E-value=25 Score=32.59 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=40.4
Q ss_pred cChHHHHHHHhhCchhHHHhhhhhhhhhchh----hhhccc----------CCccccceeeehhhhhhhHHHHhhccccc
Q 047299 102 INPWYIIDYFRRNKKAAWMTLGGTILCTTSK----ALFADV----------GHFIVLSMQINTCCLFYPALVLQYTVQAS 167 (411)
Q Consensus 102 ~~P~y~~~f~~~~~~~~~~~LG~v~L~~T~E----AlyADl----------GhF~~~~I~~aw~~~v~P~L~L~Y~GQ~A 167 (411)
.++..+-.||..-..+. |+ +|-+-| .-|-|. ..+||.+||++|=.=--++= .++|+
T Consensus 51 ~~kreiAaFlAq~~hET----gg--~~~~~E~~~~~~Ycd~~~~~pcgdG~~Y~GRG~IQLTg~~NY~~~g--~~lg~-- 120 (204)
T 3hbe_X 51 VKKRELAAFFANVMHET----GG--LCYINEKNPPINYCQSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAG--KSIGF-- 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHH----TT--TTCSBCSSCSSCCCCCCSSSCCCTTCCCCCBTTTTBCSHHHHHHHH--HHHTS--
T ss_pred ccHHHHHHHHhhccccC----CC--cEEEEeccCCCCccCCCCCCCCCCCCcccCCCceecccHHHHHHHH--HHhCC--
Confidence 35677777776544332 11 443311 235554 47899999999976211111 12333
Q ss_pred ccccCccccc-cccccc
Q 047299 168 VLVKHPEYAS-DALYKY 183 (411)
Q Consensus 168 ~ll~~p~~~~-n~f~~~ 183 (411)
=|++|||.+. ||-+..
T Consensus 121 Dll~nPdlva~dp~~a~ 137 (204)
T 3hbe_X 121 DGLNNPEKVGQDSTISF 137 (204)
T ss_dssp CTTTCGGGGGTCHHHHH
T ss_pred ccccCHHHHhhCHHHHH
Confidence 3788998775 565443
No 8
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=12.59 E-value=2.3e+02 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=23.6
Q ss_pred eEEEEEecCCCCCEEEEEEEEeecCCCCCchH
Q 047299 279 RFIFCKLEPKKINMYRCVTRYGYMDVRNESSA 310 (411)
Q Consensus 279 Rf~v~rlg~k~~g~yRvv~RYGYmD~pd~p~~ 310 (411)
+|...|+=.|+ .+||++..|-|+|..+....
T Consensus 46 kfsmnrvwnkg-evfrvvmtyeykdrasfean 76 (110)
T 2od6_A 46 KFSMNRVWNKG-EVFRVVMTYEYKDRASFEAN 76 (110)
T ss_dssp EEEEEEECSSS-SCEEEEEEEEESSHHHHHHH
T ss_pred hhhhhhhccCC-cEEEEEEEEEeccchhhhhh
Confidence 46777776654 69999999999998765443
No 9
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=12.38 E-value=49 Score=29.87 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=12.4
Q ss_pred hccCcceeeecChH
Q 047299 92 KKATSTITNAINPW 105 (411)
Q Consensus 92 i~~~p~vl~A~~P~ 105 (411)
|++||+||+|++|.
T Consensus 37 IKYDP~vLQaV~~~ 50 (170)
T 1tyj_A 37 IKYNTTYLQPWDTI 50 (170)
T ss_dssp EECCTTTEEEEETT
T ss_pred eeeChhheeccccc
Confidence 89999999999984
No 10
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=10.92 E-value=52 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=22.1
Q ss_pred cceecccccccchhHHH----Hhhhh---hccCcceeeecChH
Q 047299 70 TFIHSLSLLHFHPPVLS----AVGGI---KKATSTITNAINPW 105 (411)
Q Consensus 70 T~~v~~~g~~F~~Pi~~----~i~~~---i~~~p~vl~A~~P~ 105 (411)
+.++ |-...+-|.+ -++|. |++||+||+|+||-
T Consensus 183 ~a~v---GdII~ATIkinnI~nfAGYQvNIKYDP~VLqaV~p~ 222 (350)
T 3l8q_A 183 AAEV---GEIIKATVKINKITNFSGYQVNIKYDPTVLQAVNPK 222 (350)
T ss_dssp CCCT---TCEEEEEEEEESCTTEEEEEEEEECCTTTEEEECTT
T ss_pred eeec---ccEEEEEEEEeccCcccceEEeeeeChhHeeeccCC
Confidence 4455 5554344444 44555 99999999999993
Done!