Query 047302
Match_columns 188
No_of_seqs 112 out of 2784
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.6 6.1E-17 1.3E-21 115.1 -3.3 130 46-186 31-175 (264)
2 KOG0444 Cytoskeletal regulator 99.5 3E-15 6.4E-20 124.5 1.6 133 49-187 127-319 (1255)
3 KOG0617 Ras suppressor protein 99.4 9.4E-14 2E-18 98.9 0.5 112 70-188 30-154 (264)
4 PLN00113 leucine-rich repeat r 99.3 2.2E-12 4.8E-17 115.8 7.9 59 47-106 163-222 (968)
5 PLN00113 leucine-rich repeat r 99.3 1.7E-12 3.7E-17 116.6 7.2 131 17-156 161-297 (968)
6 KOG0472 Leucine-rich repeat pr 99.2 5.7E-12 1.2E-16 100.2 1.1 61 44-107 248-308 (565)
7 PF14580 LRR_9: Leucine-rich r 99.1 4.3E-11 9.3E-16 86.7 4.0 103 47-157 18-127 (175)
8 KOG0444 Cytoskeletal regulator 99.1 5.8E-12 1.3E-16 105.2 -1.0 133 47-186 196-341 (1255)
9 KOG0472 Leucine-rich repeat pr 99.1 1.2E-11 2.5E-16 98.4 -0.9 154 18-183 66-297 (565)
10 PF14580 LRR_9: Leucine-rich r 99.0 6.7E-10 1.4E-14 80.5 5.8 121 22-153 21-150 (175)
11 PLN03210 Resistant to P. syrin 98.9 3.9E-09 8.4E-14 96.6 9.0 82 46-134 632-714 (1153)
12 PLN03210 Resistant to P. syrin 98.9 3.7E-09 8E-14 96.7 8.9 25 144-172 847-871 (1153)
13 KOG4194 Membrane glycoprotein 98.9 4.1E-11 8.9E-16 99.3 -3.9 104 45-154 266-376 (873)
14 PRK15387 E3 ubiquitin-protein 98.8 1.6E-08 3.5E-13 88.2 8.3 60 124-187 382-448 (788)
15 KOG4194 Membrane glycoprotein 98.8 8.2E-09 1.8E-13 85.9 5.0 118 45-172 99-223 (873)
16 PRK15370 E3 ubiquitin-protein 98.7 2.9E-08 6.3E-13 86.7 7.2 56 124-183 346-410 (754)
17 KOG1259 Nischarin, modulator o 98.7 2.9E-09 6.3E-14 82.3 0.9 107 47-157 283-413 (490)
18 PRK15387 E3 ubiquitin-protein 98.7 3.6E-08 7.9E-13 86.1 6.7 50 49-106 223-272 (788)
19 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.3E-13 60.2 3.6 56 49-106 2-59 (61)
20 KOG0532 Leucine-rich repeat (L 98.7 3.8E-10 8.3E-15 93.2 -5.3 128 48-187 98-237 (722)
21 PRK15370 E3 ubiquitin-protein 98.7 1.1E-07 2.5E-12 83.1 9.3 97 48-157 199-297 (754)
22 KOG0618 Serine/threonine phosp 98.6 4.4E-09 9.6E-14 91.1 -0.2 49 120-172 379-432 (1081)
23 KOG0618 Serine/threonine phosp 98.6 1.1E-08 2.4E-13 88.7 1.1 101 46-154 381-487 (1081)
24 PLN03150 hypothetical protein; 98.6 2E-07 4.4E-12 80.4 8.1 100 50-154 420-526 (623)
25 PF13855 LRR_8: Leucine rich r 98.5 1.9E-07 4.2E-12 55.8 4.4 60 73-136 1-61 (61)
26 PLN03150 hypothetical protein; 98.5 3.6E-07 7.7E-12 78.9 7.6 89 74-169 419-513 (623)
27 cd00116 LRR_RI Leucine-rich re 98.5 2.5E-07 5.5E-12 72.9 5.9 16 122-137 219-234 (319)
28 cd00116 LRR_RI Leucine-rich re 98.4 4.1E-07 8.9E-12 71.8 5.1 135 19-157 80-235 (319)
29 KOG4658 Apoptotic ATPase [Sign 98.4 1.6E-07 3.5E-12 83.4 3.0 85 46-135 569-653 (889)
30 KOG0532 Leucine-rich repeat (L 98.3 1.2E-07 2.6E-12 78.8 0.8 100 50-157 145-248 (722)
31 COG4886 Leucine-rich repeat (L 98.3 2.6E-07 5.7E-12 75.4 2.7 115 47-172 115-234 (394)
32 KOG4237 Extracellular matrix p 98.3 2E-07 4.4E-12 74.4 1.6 63 51-115 70-134 (498)
33 COG4886 Leucine-rich repeat (L 98.3 2.7E-07 6E-12 75.2 1.6 106 49-157 141-269 (394)
34 KOG1259 Nischarin, modulator o 98.2 3.7E-07 8E-12 70.9 1.5 81 70-156 281-365 (490)
35 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.2E-11 48.4 3.4 34 74-107 2-35 (44)
36 KOG4237 Extracellular matrix p 98.2 4.2E-07 9E-12 72.7 0.6 103 60-172 56-166 (498)
37 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.9E-11 46.8 3.7 40 48-89 1-40 (44)
38 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.7E-11 75.2 3.3 130 20-157 122-264 (699)
39 KOG0531 Protein phosphatase 1, 98.1 8.9E-07 1.9E-11 72.9 1.3 103 47-157 71-176 (414)
40 KOG4579 Leucine-rich repeat (L 98.1 3E-07 6.4E-12 63.6 -1.3 111 20-139 27-138 (177)
41 KOG1644 U2-associated snRNP A' 98.1 5.3E-06 1.2E-10 60.9 4.9 101 47-153 41-150 (233)
42 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 58.1 4.6 100 51-157 22-127 (233)
43 KOG0531 Protein phosphatase 1, 97.9 7.2E-06 1.6E-10 67.6 2.5 103 46-157 93-200 (414)
44 KOG4658 Apoptotic ATPase [Sign 97.9 3.5E-05 7.7E-10 68.8 6.4 99 48-153 545-652 (889)
45 KOG3207 Beta-tubulin folding c 97.8 5.8E-06 1.3E-10 67.0 0.7 37 121-157 268-315 (505)
46 KOG1859 Leucine-rich repeat pr 97.8 7.4E-07 1.6E-11 76.3 -4.6 101 49-157 165-268 (1096)
47 KOG1859 Leucine-rich repeat pr 97.8 2.2E-06 4.8E-11 73.4 -1.8 102 47-157 186-293 (1096)
48 KOG1909 Ran GTPase-activating 97.8 1.3E-05 2.8E-10 63.2 2.4 109 46-157 155-284 (382)
49 KOG2120 SCF ubiquitin ligase, 97.7 1E-06 2.3E-11 68.2 -4.4 106 48-157 185-327 (419)
50 KOG3207 Beta-tubulin folding c 97.7 1.9E-05 4.1E-10 64.1 1.6 108 46-157 220-340 (505)
51 PRK15386 type III secretion pr 97.6 5.9E-05 1.3E-09 61.6 4.0 38 49-89 73-111 (426)
52 KOG4579 Leucine-rich repeat (L 97.4 4.4E-05 9.5E-10 53.0 0.7 106 49-165 28-141 (177)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00028 6.2E-09 61.7 3.2 103 48-157 122-234 (699)
54 KOG1909 Ran GTPase-activating 97.2 0.00015 3.3E-09 57.3 1.3 107 47-156 91-226 (382)
55 KOG2123 Uncharacterized conser 97.2 1.4E-05 3.1E-10 61.6 -4.5 56 47-106 18-73 (388)
56 PRK15386 type III secretion pr 97.1 0.0015 3.3E-08 53.5 6.0 91 46-153 50-142 (426)
57 KOG2739 Leucine-rich acidic nu 97.0 0.00039 8.4E-09 53.0 1.8 77 72-151 64-151 (260)
58 KOG2739 Leucine-rich acidic nu 96.9 0.00049 1.1E-08 52.4 2.1 90 65-157 35-130 (260)
59 COG5238 RNA1 Ran GTPase-activa 96.9 0.00084 1.8E-08 51.9 3.1 109 46-157 90-228 (388)
60 KOG2120 SCF ubiquitin ligase, 96.8 0.00012 2.5E-09 57.2 -2.2 108 46-156 232-351 (419)
61 KOG2123 Uncharacterized conser 96.8 8.2E-05 1.8E-09 57.5 -3.1 79 71-156 17-101 (388)
62 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.3E-08 30.0 1.1 18 75-92 2-19 (22)
63 KOG2982 Uncharacterized conser 96.3 0.00082 1.8E-08 52.5 -0.5 49 124-172 71-126 (418)
64 KOG2982 Uncharacterized conser 96.0 0.0092 2E-07 46.9 3.9 38 46-85 69-109 (418)
65 PF00560 LRR_1: Leucine Rich R 95.5 0.0028 6.1E-08 29.5 -0.4 21 144-168 1-21 (22)
66 PF00931 NB-ARC: NB-ARC domain 95.4 0.057 1.2E-06 42.0 6.4 56 2-57 2-59 (287)
67 PF13504 LRR_7: Leucine rich r 95.0 0.014 3.1E-07 25.2 1.1 15 143-157 1-15 (17)
68 smart00370 LRR Leucine-rich re 93.7 0.067 1.4E-06 25.6 2.0 19 73-91 2-20 (26)
69 smart00369 LRR_TYP Leucine-ric 93.7 0.067 1.4E-06 25.6 2.0 19 73-91 2-20 (26)
70 smart00369 LRR_TYP Leucine-ric 92.9 0.12 2.5E-06 24.8 2.2 21 142-166 1-21 (26)
71 smart00370 LRR Leucine-rich re 92.9 0.12 2.5E-06 24.8 2.2 21 142-166 1-21 (26)
72 KOG1947 Leucine rich repeat pr 92.3 0.051 1.1E-06 45.1 0.6 106 47-155 187-307 (482)
73 KOG4341 F-box protein containi 92.0 0.078 1.7E-06 43.5 1.4 125 45-172 317-454 (483)
74 PF13306 LRR_5: Leucine rich r 91.7 1.3 2.8E-05 29.7 7.1 97 45-152 9-112 (129)
75 COG5238 RNA1 Ran GTPase-activa 91.6 0.33 7.1E-06 38.0 4.2 107 46-156 56-198 (388)
76 KOG0473 Leucine-rich repeat pr 90.0 0.011 2.5E-07 44.8 -4.8 85 46-137 40-124 (326)
77 KOG0473 Leucine-rich repeat pr 88.9 0.0079 1.7E-07 45.6 -6.2 91 61-156 29-124 (326)
78 KOG3864 Uncharacterized conser 88.4 0.1 2.2E-06 38.7 -0.7 77 74-153 102-186 (221)
79 KOG3864 Uncharacterized conser 83.5 0.13 2.9E-06 38.1 -2.2 82 20-106 101-186 (221)
80 PF13516 LRR_6: Leucine Rich r 82.3 0.88 1.9E-05 21.1 1.2 14 143-156 2-15 (24)
81 smart00364 LRR_BAC Leucine-ric 81.7 1 2.2E-05 21.8 1.3 18 143-164 2-19 (26)
82 KOG1947 Leucine rich repeat pr 77.4 0.85 1.8E-05 37.8 0.3 88 70-157 185-284 (482)
83 smart00365 LRR_SD22 Leucine-ri 76.4 2.3 4.9E-05 20.5 1.6 13 74-86 3-15 (26)
84 KOG4341 F-box protein containi 75.2 1.7 3.6E-05 36.0 1.4 124 21-150 321-459 (483)
85 PF13306 LRR_5: Leucine rich r 75.0 9.7 0.00021 25.3 5.1 79 45-133 32-112 (129)
86 smart00368 LRR_RI Leucine rich 74.2 2.5 5.3E-05 20.6 1.4 15 143-157 2-16 (28)
87 KOG3763 mRNA export factor TAP 71.7 3 6.6E-05 35.7 2.2 78 70-149 215-307 (585)
88 smart00367 LRR_CC Leucine-rich 60.4 4.6 9.9E-05 19.1 0.7 14 48-62 2-15 (26)
89 KOG3763 mRNA export factor TAP 54.0 6.1 0.00013 33.9 0.9 63 93-157 215-284 (585)
90 PRK07667 uridine kinase; Provi 39.3 61 0.0013 23.6 4.2 39 4-42 2-40 (193)
91 KOG4308 LRR-containing protein 38.0 1.1 2.4E-05 37.9 -5.8 20 66-85 165-184 (478)
92 PRK08118 topology modulation p 36.7 37 0.0008 24.2 2.6 24 21-44 3-26 (167)
93 PF13207 AAA_17: AAA domain; P 33.2 47 0.001 21.7 2.6 22 21-42 1-22 (121)
94 PRK06696 uridine kinase; Valid 32.0 1E+02 0.0022 23.0 4.5 38 5-42 7-45 (223)
95 PF01583 APS_kinase: Adenylyls 31.1 63 0.0014 23.0 3.0 34 21-54 4-37 (156)
96 COG0529 CysC Adenylylsulfate k 29.1 62 0.0013 23.9 2.7 35 20-54 24-58 (197)
97 PF13191 AAA_16: AAA ATPase do 27.8 94 0.002 21.8 3.6 40 3-42 7-47 (185)
98 PRK07261 topology modulation p 27.6 93 0.002 22.2 3.5 22 21-42 2-23 (171)
99 PF13238 AAA_18: AAA domain; P 26.8 64 0.0014 21.0 2.4 21 22-42 1-21 (129)
100 PF05496 RuvB_N: Holliday junc 25.9 1.5E+02 0.0033 22.7 4.4 62 15-83 46-110 (233)
101 COG0572 Udk Uridine kinase [Nu 24.6 1.2E+02 0.0027 22.9 3.7 28 17-44 6-33 (218)
102 COG3842 PotA ABC-type spermidi 24.4 1.3E+02 0.0028 24.6 4.0 43 20-67 32-74 (352)
103 cd00009 AAA The AAA+ (ATPases 23.5 1.9E+02 0.0041 18.7 4.3 38 3-42 5-42 (151)
104 PF00485 PRK: Phosphoribulokin 22.6 87 0.0019 22.7 2.6 23 21-43 1-23 (194)
105 COG4136 ABC-type uncharacteriz 22.4 2.1E+02 0.0045 20.8 4.2 45 20-66 29-73 (213)
106 PRK05480 uridine/cytidine kina 21.2 96 0.0021 22.7 2.6 26 18-43 5-30 (209)
107 TIGR00864 PCC polycystin catio 21.1 71 0.0015 33.3 2.2 30 54-85 1-31 (2740)
108 PRK06762 hypothetical protein; 20.5 1.1E+02 0.0024 21.3 2.7 23 20-42 3-25 (166)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.1e-17 Score=115.07 Aligned_cols=130 Identities=22% Similarity=0.323 Sum_probs=95.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.+++.|.++. +.+..+|..+..+.+|+.|++++|+++++|.+++.+++|+.|+++.|. +..+ |.+++.++.
T Consensus 31 ~~s~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~l----prgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNIL----PRGFGSFPA 103 (264)
T ss_pred chhhhhhhhccc--CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcC----ccccCCCch
Confidence 567777888888 788888887788888888888888888888888888888888888876 5555 556688888
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcc
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRN 186 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L 186 (188)
|..|+++.|++.+- ..++.|+.|.+++|.+.. +|..++++++| +-.+|.+++.+++|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~----lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI----LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc----CChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 88888888877664 234455666666666665 66666666655 44466666665554
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=3e-15 Score=124.46 Aligned_cols=133 Identities=25% Similarity=0.373 Sum_probs=91.1
Q ss_pred eecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCC----CCccCCC---------
Q 047302 49 SVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ----NLECLPS--------- 114 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----~l~~l~~--------- 114 (188)
+.-+|++|+ |.|+.+|. .+.++.-|-.|++++|+++.+|+.+..+..|+.|.+++|. .+..+|.
T Consensus 127 n~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 333445554 45555553 2234445555555555555566666666666666666653 0111111
Q ss_pred ------------cc-------------------ccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCC
Q 047302 115 ------------PI-------------------SENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEG 159 (188)
Q Consensus 115 ------------~~-------------------~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~ 159 (188)
++ |+-+.++++|+.|++++|.|+++ +.+.+|++|+++.|+++.
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-- 282 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-- 282 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc--
Confidence 00 66677888899999999999888 778889999999999998
Q ss_pred CCCChhhHHHhhh-----------hhcCCCCchhhhccc
Q 047302 160 GEIPRDICYLCLL-----------FKDEPESNSQIRRNV 187 (188)
Q Consensus 160 ~~lp~~l~~l~~L-----------~~~lp~~~~~l~~L~ 187 (188)
+|+.+++|++| |..+|+.|+.|.+|+
T Consensus 283 --LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 283 --LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred --chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 99999888877 889999999998874
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=9.4e-14 Score=98.94 Aligned_cols=112 Identities=24% Similarity=0.343 Sum_probs=100.2
Q ss_pred cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCC
Q 047302 70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSL 145 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L 145 (188)
-.+.+++.|.++.|++..+|+.+.++.+|++|++++|+ ++++|. .++.+++|+.|++.-|++..+ +.++.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~----~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPT----SISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcCh----hhhhchhhhheecchhhhhcCccccCCCchh
Confidence 56788999999999999999999999999999999998 888854 459999999999998877555 899999
Q ss_pred CEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcccC
Q 047302 146 TKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRNVG 188 (188)
Q Consensus 146 ~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L~~ 188 (188)
+.||+.+|++.+ ..+|..+-+++.| |+.+|..++++++||+
T Consensus 105 evldltynnl~e--~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 105 EVLDLTYNNLNE--NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhhhcccccccc--ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 999999999998 8899988777766 8999999999999984
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=2.2e-12 Score=115.84 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=23.3
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCC
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDW 106 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~ 106 (188)
+++|++|++++| .....+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|
T Consensus 163 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 163 FSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 344444444442 212233333344444444444444333 33333444444444444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=1.7e-12 Score=116.56 Aligned_cols=131 Identities=26% Similarity=0.307 Sum_probs=82.3
Q ss_pred CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcC
Q 047302 17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYL 95 (188)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l 95 (188)
+++..+..++++++..... ++..+ ..+++|++|++++| .....+|..+.++++|+.|++++|++. .+|..++.+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~---~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGK---IPNSL-TNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred hcCCCCCEEECccCccccc---CChhh-hhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3445566666665443221 11111 25778888888885 444567777788888888888888776 677778888
Q ss_pred CCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302 96 TGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 96 ~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~ 156 (188)
++|++|++++|. +.. .+|..++.+++|+.|++++|.+.+. ..+++|+.|++++|.+.
T Consensus 236 ~~L~~L~L~~n~-l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 236 TSLNHLDLVYNN-LTG---PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CCCCEEECcCce-ecc---ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 888888888775 321 1244456666667777666665432 44555666666666554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=5.7e-12 Score=100.16 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=56.4
Q ss_pred CcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCC
Q 047302 44 GTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 107 (188)
..++.++.+||+.+ |.++++|+.++.+++|.+||+++|.|..+|.+++++ +|+.|.+.||.
T Consensus 248 ~~~L~~l~vLDLRd--Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRD--NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccccceeeeccc--cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 34788999999999 899999999999999999999999999999999999 89999988886
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=4.3e-11 Score=86.71 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcccccc-CCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENL-GKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l-~~l~~ 125 (188)
...+++|++++ +.++.+...-..+.+++.|++++|.|+.++ ++..++.|+.|++++|. +..+. +.+ ..+++
T Consensus 18 ~~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~----~~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS----EGLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C----HHHHHH-TT
T ss_pred ccccccccccc--cccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc----cchHHhCCc
Confidence 34556666666 455554432124556666666666666554 45556666666666665 44432 112 23556
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.|.++ ..+++|+.|++.+|.+.+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 66666666665554 455666666666666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.12 E-value=5.8e-12 Score=105.21 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=75.4
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
+++|++|.+++..-.+..+|..+..+.+|+.++++.|.+..+|..+.++.+|+.|++++|. ++++.... +.+.+|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~----~~W~~l 270 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTE----GEWENL 270 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccH----HHHhhh
Confidence 3444455555430112445655666666666666666666666666666666666666665 55554333 455566
Q ss_pred cEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcc
Q 047302 127 EELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRN 186 (188)
Q Consensus 127 ~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L 186 (188)
.+|+++.|.+..+ ..++.|+.|...+|+++- ..+|.++++|..| +.-+|+.+-+|.+|
T Consensus 271 EtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL 341 (1255)
T KOG0444|consen 271 ETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKL 341 (1255)
T ss_pred hhhccccchhccchHHHhhhHHHHHHHhccCcccc--cCCccchhhhhhhHHHHhhccccccCchhhhhhHHH
Confidence 6666666665555 455556666666665554 5566666665555 34455555444444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=1.2e-11 Score=98.43 Aligned_cols=154 Identities=27% Similarity=0.349 Sum_probs=94.0
Q ss_pred ceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCC
Q 047302 18 DVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTG 97 (188)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 97 (188)
++..+.++.+.+....+.+.++- .+..++.++.+. +.+.++|+.+.....+..++.+.|++.++|++++.+-.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig-----~l~~l~~l~vs~--n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIG-----ELEALKSLNVSH--NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred cccceeEEEeccchhhhCCHHHH-----HHHHHHHhhccc--chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 44556666666555444443321 344444444444 44444444444444455555555544444444444444
Q ss_pred CcEEEccCCCCCccCCCcc------------------------------------------ccccCCCCcccEEEccCCc
Q 047302 98 LFVLNFKDWQNLECLPSPI------------------------------------------SENLGKVDSLEELDISGTA 135 (188)
Q Consensus 98 L~~L~l~~~~~l~~l~~~~------------------------------------------~~~l~~l~~L~~L~l~~~~ 135 (188)
++.++...|+ +..+|.++ |+.++.+.+|..|++..|.
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence 4444444433 33333322 6667777777777777776
Q ss_pred cccc---------------------------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC
Q 047302 136 IRQL---------------------------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES 179 (188)
Q Consensus 136 i~~~---------------------------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~ 179 (188)
|+.+ .+++++.+||+++|++++ +|.+++.+++| +..+|-+
T Consensus 218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke----~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE----VPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc----CchHHHHhhhhhhhcccCCccccCCcc
Confidence 6554 588999999999999999 99999988877 7788888
Q ss_pred chhh
Q 047302 180 NSQI 183 (188)
Q Consensus 180 ~~~l 183 (188)
++++
T Consensus 294 Lgnl 297 (565)
T KOG0472|consen 294 LGNL 297 (565)
T ss_pred cccc
Confidence 8887
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=6.7e-10 Score=80.52 Aligned_cols=121 Identities=20% Similarity=0.254 Sum_probs=55.2
Q ss_pred EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhh-hcCCCCcE
Q 047302 22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFV 100 (188)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 100 (188)
+..+++.|.+-.++... +..+.+|+.|++++ |.++.++. +..+++|+.|++++|+|..+++.+ ..+++|+.
T Consensus 21 ~~~L~L~~n~I~~Ie~L-----~~~l~~L~~L~Ls~--N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 21 LRELNLRGNQISTIENL-----GATLDKLEVLDLSN--NQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------S-------TT-TT--EEE-TT--S--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccch-----hhhhcCCCEEECCC--CCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 45566666554444321 12478999999999 79988874 578999999999999999997665 46899999
Q ss_pred EEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEeccCCC
Q 047302 101 LNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSDC 153 (188)
Q Consensus 101 L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~ 153 (188)
|++++|. +..+.. + ..+..+++|+.|++.+|++.+. ..+|+|+.||-..-
T Consensus 93 L~L~~N~-I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNK-ISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS----SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCc-CCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999997 666533 2 4567899999999999999876 78999999986533
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=3.9e-09 Score=96.61 Aligned_cols=82 Identities=28% Similarity=0.399 Sum_probs=51.7
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++|+.+++++| +.++.+|. +..+++|+.|++.+| .+..+|..++.+++|+.|++++|..+..+|.. + .++
T Consensus 632 ~l~~Lk~L~Ls~~-~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~ 704 (1153)
T PLN03210 632 SLTGLRNIDLRGS-KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLK 704 (1153)
T ss_pred cCCCCCEEECCCC-CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCC
Confidence 4667777777765 55666664 356677777777766 45567777777777777777776656555422 1 445
Q ss_pred cccEEEccCC
Q 047302 125 SLEELDISGT 134 (188)
Q Consensus 125 ~L~~L~l~~~ 134 (188)
+|+.|++++|
T Consensus 705 sL~~L~Lsgc 714 (1153)
T PLN03210 705 SLYRLNLSGC 714 (1153)
T ss_pred CCCEEeCCCC
Confidence 5555555555
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=3.7e-09 Score=96.75 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 144 SLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 144 ~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+|+.|++++|.++. +|..+..+++|
T Consensus 847 nL~~L~Ls~n~i~~----iP~si~~l~~L 871 (1153)
T PLN03210 847 NISDLNLSRTGIEE----VPWWIEKFSNL 871 (1153)
T ss_pred ccCEeECCCCCCcc----ChHHHhcCCCC
Confidence 45555555555555 66665555554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.92 E-value=4.1e-11 Score=99.28 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=55.4
Q ss_pred cccceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 45 TYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
+.+.+++.++++. |.+.++.+ .+-+++.|+.|+++.|.|+.+ +..+...++|++|+++.|. +++++ +..+..
T Consensus 266 y~l~kme~l~L~~--N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~---~~sf~~ 339 (873)
T KOG4194|consen 266 YGLEKMEHLNLET--NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLD---EGSFRV 339 (873)
T ss_pred eeecccceeeccc--chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCC---hhHHHH
Confidence 3456666666666 55555443 334566666666666666544 4456666666666666665 55554 222344
Q ss_pred CCcccEEEccCCccccc-----CCCCCCCEeccCCCC
Q 047302 123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCN 154 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~ 154 (188)
+..|+.|+++.|+++.+ ..+.+|++|||+.|.
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 44455555555554443 344444444444443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=1.6e-08 Score=88.22 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=40.8
Q ss_pred CcccEEEccCCccccc-CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh------hhcCCCCchhhhccc
Q 047302 124 DSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL------FKDEPESNSQIRRNV 187 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L------~~~lp~~~~~l~~L~ 187 (188)
.+|+.|++++|.++.+ ...++|+.|++++|.++. +|.....|..| +..+|+++.++.+|+
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss----IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS----LPMLPSGLLSLSVYRNQLTRLPESLIHLSSET 448 (788)
T ss_pred cccceEEecCCcccCCCCcccCCCEEEccCCcCCC----CCcchhhhhhhhhccCcccccChHHhhccCCC
Confidence 3567777887777766 333468888888888776 66655556555 666777777666553
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.78 E-value=8.2e-09 Score=85.94 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=88.8
Q ss_pred cccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 45 TYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
+++++|+.+.+.. |.++.+|.......+++.|++..|.|..+. +.++-++.|+++|++.|. +.+++.. .+..-
T Consensus 99 ~nl~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~---sfp~~ 172 (873)
T KOG4194|consen 99 YNLPNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKP---SFPAK 172 (873)
T ss_pred hcCCcceeeeecc--chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCC---CCCCC
Confidence 4788888888888 788888877666677888888888887664 457778888899998886 6666421 23344
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh-HHHhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI-CYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l-~~l~~L 172 (188)
.++++|++++|+|+.+ ..+.+|.+|.|+.|.++. +|... +.|+.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~~L 223 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT----LPQRSFKRLPKL 223 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccc----cCHHHhhhcchh
Confidence 6788999999998887 566678888899998887 88753 335554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.73 E-value=2.9e-08 Score=86.74 Aligned_cols=56 Identities=27% Similarity=0.352 Sum_probs=35.5
Q ss_pred CcccEEEccCCccccc--CCCCCCCEeccCCCCCCCCCCCCChhhH-HHhhh------hhcCCCCchhh
Q 047302 124 DSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLPVEGGEIPRDIC-YLCLL------FKDEPESNSQI 183 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~~~~~~lp~~l~-~l~~L------~~~lp~~~~~l 183 (188)
++|+.|++++|.++.+ .-.++|+.|++++|+++. +|..+. .+..| +..+|..+..+
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~----LP~~l~~sL~~LdLs~N~L~~LP~sl~~~ 410 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN----LPENLPAALQIMQASRNNLVRLPESLPHF 410 (754)
T ss_pred CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC----CCHhHHHHHHHHhhccCCcccCchhHHHH
Confidence 4677777777777655 223468888888888876 776653 34444 55666655443
No 17
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2.9e-09 Score=82.35 Aligned_cols=107 Identities=22% Similarity=0.188 Sum_probs=73.0
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc----------
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI---------- 116 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~---------- 116 (188)
...|+.+|+|+ |.|+.+.+.+.-.+.++.|+++.|.+..+. .+..+.+|+.|++++|. +.++....
T Consensus 283 Wq~LtelDLS~--N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSG--NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccc--cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 35678889998 788888887777888999999999987776 47888899999999886 54442211
Q ss_pred --------ccccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 117 --------SENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 117 --------~~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
..+++++.+|..|++++|+|+.+ +.+|.|+++.+.+|.+..
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 12344455555555555555544 555566666666665554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.69 E-value=3.6e-08 Score=86.08 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=25.7
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCC
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDW 106 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 106 (188)
+|+.|+++. |.++.+|.. +++|++|++++|++..+|.. .++|+.|++.+|
T Consensus 223 ~L~~L~L~~--N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 223 HITTLVIPD--NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCEEEccC--CcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 455566665 455555532 34566666666666555432 234444444444
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=2e-08 Score=60.16 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=24.8
Q ss_pred eecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCC
Q 047302 49 SVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDW 106 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~ 106 (188)
+|+++++++ +.++.+| ..+..+++|++|++++|++..+++ .+..+++|+++++++|
T Consensus 2 ~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETS--STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCC--CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344445544 3444444 233444444444444444444432 2344444444444444
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=3.8e-10 Score=93.20 Aligned_cols=128 Identities=26% Similarity=0.364 Sum_probs=74.6
Q ss_pred ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
.+|..+.++. |.+..+|+.++.+..|++++++.|++..+|..+-.++ |+++.+++|+ ++.+ |+.++....|.
T Consensus 98 ~~Le~liLy~--n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~l----p~~ig~~~tl~ 169 (722)
T KOG0532|consen 98 VSLESLILYH--NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSL----PEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHh--ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccC----CcccccchhHH
Confidence 3445555555 5666666666666667777777777766666555554 6666666665 5555 34446566666
Q ss_pred EEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh--------hhcCCCCchhhhccc
Q 047302 128 ELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL--------FKDEPESNSQIRRNV 187 (188)
Q Consensus 128 ~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L--------~~~lp~~~~~l~~L~ 187 (188)
.|+.+.|.+..+ +.+.+|+.|.+..|++.. +|..+..|+-. +..||-++.++++||
T Consensus 170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~----lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ 237 (722)
T ss_pred HhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence 677777666555 455555555555555554 55555544433 444555555555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.68 E-value=1.1e-07 Score=83.09 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=64.7
Q ss_pred ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
++++.|++++ |.+..+|..+. .+|+.|++++|++..+|..+. .+|+.|++++|. +.++|..+ ..+|+
T Consensus 199 ~~L~~L~Ls~--N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l------~s~L~ 265 (754)
T PRK15370 199 EQITTLILDN--NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERL------PSALQ 265 (754)
T ss_pred cCCcEEEecC--CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhH------hCCCC
Confidence 4677888887 67777776433 478888888888877776543 467778887776 66554332 13677
Q ss_pred EEEccCCccccc-CCC-CCCCEeccCCCCCCC
Q 047302 128 ELDISGTAIRQL-SRL-CSLTKWDLSDCNLPV 157 (188)
Q Consensus 128 ~L~l~~~~i~~~-~~l-~~L~~L~l~~~~l~~ 157 (188)
.|++++|.++.+ ..+ ++|+.|++++|+++.
T Consensus 266 ~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 266 SLDLFHNKISCLPENLPEELRYLSVYDNSIRT 297 (754)
T ss_pred EEECcCCccCccccccCCCCcEEECCCCcccc
Confidence 777777777655 222 367777777777765
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.65 E-value=4.4e-09 Score=91.14 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=31.5
Q ss_pred cCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 120 LGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+..+..|+.|+++.|++..+ ..+..|+.|++++|.++. +|..+..+..|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~----Lp~tva~~~~L 432 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT----LPDTVANLGRL 432 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh----hhHHHHhhhhh
Confidence 45566677777777766655 566667777777777776 66665554444
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.61 E-value=1.1e-08 Score=88.72 Aligned_cols=101 Identities=22% Similarity=0.241 Sum_probs=73.3
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
++.+|+.|++++ |.+..+|. .+.++..|+.|+++||+++.+|..+-.+..|++|..-+|+ +..+ | .+..++
T Consensus 381 ~~~hLKVLhLsy--NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~f----P-e~~~l~ 452 (1081)
T KOG0618|consen 381 NFKHLKVLHLSY--NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSF----P-ELAQLP 452 (1081)
T ss_pred cccceeeeeecc--cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeec----h-hhhhcC
Confidence 456777777777 66666663 4466777777777777777777777777777777777765 4444 4 457788
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCC
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCN 154 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~ 154 (188)
+|+.+|++.|.++.. -..++|++||+++|.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 899999999988876 233689999999985
No 24
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=2e-07 Score=80.36 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=60.8
Q ss_pred ecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
++.|+++++ ..-..+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|. +. ..+|+.++.+++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-ls---g~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FN---GSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CC---CCCchHHhcCCCCCE
Confidence 556666663 222456666667777777777777765 666667777777777777765 22 223555567777777
Q ss_pred EEccCCccccc------CCCCCCCEeccCCCC
Q 047302 129 LDISGTAIRQL------SRLCSLTKWDLSDCN 154 (188)
Q Consensus 129 L~l~~~~i~~~------~~l~~L~~L~l~~~~ 154 (188)
|++++|.++.. ....++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 77777766543 112344556666554
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=1.9e-07 Score=55.80 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=51.7
Q ss_pred CCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcc
Q 047302 73 KSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAI 136 (188)
Q Consensus 73 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i 136 (188)
++|++|++++|++..+|+ .+..+++|+++++++|. +..++ |..+..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~---~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIP---PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEE---TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccC---HHHHcCCCCCCEEeCcCCcC
Confidence 478999999999999975 57889999999999997 77665 34578999999999999975
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=3.6e-07 Score=78.90 Aligned_cols=89 Identities=27% Similarity=0.360 Sum_probs=76.0
Q ss_pred CccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCE
Q 047302 74 SLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTK 147 (188)
Q Consensus 74 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~ 147 (188)
.++.|++++|.+. .+|..+..+++|+.|++++|. +. ..+|..++.+++|+.|++++|.++.. +.+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-l~---g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IR---GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-cc---CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 3788999999997 789999999999999999997 43 23366679999999999999998764 78999999
Q ss_pred eccCCCCCCCCCCCCChhhHHH
Q 047302 148 WDLSDCNLPVEGGEIPRDICYL 169 (188)
Q Consensus 148 L~l~~~~l~~~~~~lp~~l~~l 169 (188)
|++++|++. +.+|..+..+
T Consensus 495 L~Ls~N~l~---g~iP~~l~~~ 513 (623)
T PLN03150 495 LNLNGNSLS---GRVPAALGGR 513 (623)
T ss_pred EECcCCccc---ccCChHHhhc
Confidence 999999988 5688887653
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.49 E-value=2.5e-07 Score=72.93 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=7.4
Q ss_pred CCCcccEEEccCCccc
Q 047302 122 KVDSLEELDISGTAIR 137 (188)
Q Consensus 122 ~l~~L~~L~l~~~~i~ 137 (188)
.+++|+.|++++|.++
T Consensus 219 ~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 219 SLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccCCCCEEecCCCcCc
Confidence 3444444444444444
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=4.1e-07 Score=71.75 Aligned_cols=135 Identities=19% Similarity=0.108 Sum_probs=78.6
Q ss_pred eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccc-----cccccccCC-CCccEEeecCccCc-----c
Q 047302 19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIA-----NLERFWGSM-KSLTMLILDGTAIR-----E 87 (188)
Q Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~-----~l~~~~~~l-~~L~~L~l~~~~i~-----~ 87 (188)
...+..+++.++................ ++|+.|++++| .+. .+...+..+ ++|+.+++++|.+. .
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~--~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN--GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC--ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3455556666544332111111111112 55888888875 332 223344555 77888888888775 2
Q ss_pred cchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302 88 LPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 88 lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~ 157 (188)
++..+..+++|+.|++++|. +..- ...++..+..+++|+.|++++|.+.+. ..+++|++|++++|.+.+
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 157 LAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 34445666788888888875 4310 011123345556888888888876543 566778888888887763
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-07 Score=83.39 Aligned_cols=85 Identities=24% Similarity=0.235 Sum_probs=67.4
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.++.|++||+++| ..+.++|..++++-+|++|+++++.+.++|.+++++..|.+|++..+..+... |.....+.+
T Consensus 569 ~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~ 643 (889)
T KOG4658|consen 569 SLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQS 643 (889)
T ss_pred hCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc----cchhhhccc
Confidence 5888999999987 77788898888899999999999999999989999999999988876544443 233456888
Q ss_pred ccEEEccCCc
Q 047302 126 LEELDISGTA 135 (188)
Q Consensus 126 L~~L~l~~~~ 135 (188)
|++|.+....
T Consensus 644 Lr~L~l~~s~ 653 (889)
T KOG4658|consen 644 LRVLRLPRSA 653 (889)
T ss_pred ccEEEeeccc
Confidence 8888776554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=1.2e-07 Score=78.81 Aligned_cols=100 Identities=30% Similarity=0.377 Sum_probs=50.9
Q ss_pred ecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEE
Q 047302 50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129 (188)
Q Consensus 50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L 129 (188)
|+++.+++ |.++.+|+.++...+|..|+.+.|++..+|..++.+.+|+.+.+..|. +..+ |+.+..++ |..|
T Consensus 145 Lkvli~sN--Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~l----p~El~~Lp-Li~l 216 (722)
T KOG0532|consen 145 LKVLIVSN--NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDL----PEELCSLP-LIRL 216 (722)
T ss_pred ceeEEEec--CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhC----CHHHhCCc-eeee
Confidence 44444544 445555544444445555555555555555555555555555555554 3333 23334333 5555
Q ss_pred EccCCccccc----CCCCCCCEeccCCCCCCC
Q 047302 130 DISGTAIRQL----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 130 ~l~~~~i~~~----~~l~~L~~L~l~~~~l~~ 157 (188)
|++.|+++.+ .++..|++|-|.+|.+++
T Consensus 217 DfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 5555555554 555555555555555554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.6e-07 Score=75.35 Aligned_cols=115 Identities=28% Similarity=0.364 Sum_probs=72.1
Q ss_pred cceecEEEEcccccccccccccccCCC-CccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMK-SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.++.+++.+ +.+..++......+ +|+.|+++.|.+.++|..+..++.|+.|+++.|+ +..++ ...+..++
T Consensus 115 ~~~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~----~~~~~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLP----KLLSNLSN 187 (394)
T ss_pred ccceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhh----hhhhhhhh
Confidence 34566667766 56666666555553 7777777777777776667777777777777776 55553 22246667
Q ss_pred ccEEEccCCccccc-C---CCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL-S---RLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-~---~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|+.|++++|.++++ . ....|+++.++.|...+ .+..+..+..+
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~~~l 234 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE----LLSSLSNLKNL 234 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCccee----cchhhhhcccc
Confidence 77777777777666 1 33347777777774333 45555554444
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.32 E-value=2e-07 Score=74.41 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=36.2
Q ss_pred cEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCc
Q 047302 51 GTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSP 115 (188)
Q Consensus 51 ~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~ 115 (188)
..+.+.. |.|+.+|+ .+..+++|++|+++.|+|+.+ |..+..+..+..|-+.++..++.++..
T Consensus 70 veirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 70 VEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred eEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 3455666 56666653 446666666666666666655 444566666655555553335555443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.28 E-value=2.7e-07 Score=75.24 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=66.0
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc------------
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI------------ 116 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~------------ 116 (188)
+|+.+++++ +.+..+|..+..+++|+.|+++.|++.++|...+..+.|+.+++++|. +..+|..+
T Consensus 141 nL~~L~l~~--N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSD--NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccc--cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 677777777 666666555566777777777777777777655567777777777775 55554321
Q ss_pred -------ccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCC
Q 047302 117 -------SENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 117 -------~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~ 157 (188)
+..+..+.++..+.+.+|.+... ..+++++.|++++|.+++
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 22234444444555555554431 566667777777777776
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=3.7e-07 Score=70.90 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=61.7
Q ss_pred cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCC
Q 047302 70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSL 145 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L 145 (188)
..+..|+.+++++|.|..+.++..-.+.+++|+++.|. +.++ .++..+++|+.|++++|.++.. ..+.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v-----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTV-----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeee-----hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 44568999999999999999899989999999999997 6554 4468899999999999976665 334444
Q ss_pred CEeccCCCCCC
Q 047302 146 TKWDLSDCNLP 156 (188)
Q Consensus 146 ~~L~l~~~~l~ 156 (188)
.+|.++.|.+.
T Consensus 355 KtL~La~N~iE 365 (490)
T KOG1259|consen 355 KTLKLAQNKIE 365 (490)
T ss_pred eeeehhhhhHh
Confidence 44444444443
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.5e-06 Score=48.39 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred CccEEeecCccCcccchhhhcCCCCcEEEccCCC
Q 047302 74 SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 74 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 107 (188)
+|++|++++|+|+.+|+.++++++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666666666666666556666666666666665
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.18 E-value=4.2e-07 Score=72.67 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=80.5
Q ss_pred cccccccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccC-Cccc
Q 047302 60 KRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISG-TAIR 137 (188)
Q Consensus 60 ~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~-~~i~ 137 (188)
..+.++|..+ ......+++..|+|..+|+. |+.+++|++++++.|. +..+. |+.+..+.++..|.+.+ |+|+
T Consensus 56 ~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~---p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 56 KGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIA---PDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcC---hHhhhhhHhhhHHHhhcCCchh
Confidence 5677777532 24678899999999999864 8899999999999997 77664 66678888888877666 8899
Q ss_pred cc-----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302 138 QL-----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL 172 (188)
Q Consensus 138 ~~-----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L 172 (188)
++ +.+.+++.|.+.-|++.. ++. .+..|+++
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~C----ir~~al~dL~~l 166 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINC----IRQDALRDLPSL 166 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcc----hhHHHHHHhhhc
Confidence 98 788888888888887774 443 45666665
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=3.6e-06 Score=46.82 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=34.6
Q ss_pred ceecEEEEcccccccccccccccCCCCccEEeecCccCcccc
Q 047302 48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP 89 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp 89 (188)
++|++|++++ +.++.+|..+.++++|+.|++++|++..++
T Consensus 1 ~~L~~L~l~~--N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN--NQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETS--SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccC--CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999 799999987899999999999999998876
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=1.7e-06 Score=75.18 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=92.7
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccc--ccccccccCCCCccEEeecCccCcccchhhhcCCC
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRI--ANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTG 97 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i--~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 97 (188)
..+..++++|.... ...-...++..+++|+.|.+.+ -.+ +++.....++++|..||++++++..+ .+++.+++
T Consensus 122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~--~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISG--RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchh--hccHHHHHhhhCcccceEEecC--ceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 44556666664433 2222334455789999999987 444 44555668899999999999999988 58999999
Q ss_pred CcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302 98 LFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 98 L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~ 157 (188)
|++|.+.+-. +.... . -..+..+.+|+.||++...-... ..+|.|+.||.++..+..
T Consensus 197 Lq~L~mrnLe-~e~~~-~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 197 LQVLSMRNLE-FESYQ-D-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHHhccCCC-CCchh-h-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999887643 33211 1 13568899999999987753332 679999999999887664
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=8.9e-07 Score=72.92 Aligned_cols=103 Identities=28% Similarity=0.277 Sum_probs=63.9
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
+..++.+.+.. +.+......+..+.+++.+++.+|.|+.+...+..+.+|++|++++|. +..+ ..+..+..|
T Consensus 71 l~~l~~l~l~~--n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-----~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQ--NLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-----EGLSTLTLL 142 (414)
T ss_pred hHhHHhhccch--hhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-----cchhhccch
Confidence 44555555555 555543343466667777777777776666446667777777777775 4444 334555667
Q ss_pred cEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 127 EELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 127 ~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
+.|++.+|.|+.+ ..++.|+.+++++|.+..
T Consensus 143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhheeccCcchhccCCccchhhhcccCCcchhhh
Confidence 7777777776666 446667777777776665
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=3e-07 Score=63.59 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=81.3
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccc-cCCCCccEEeecCccCcccchhhhcCCCC
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFW-GSMKSLTMLILDGTAIRELPLSVEYLTGL 98 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 98 (188)
..+..++++.|.-.-+++++|... ....|...++++ |.++.+|+.+ .+++.++.+++++|++.++|..+-.++.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~--~~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLS--KGYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHh--CCceEEEEeccc--chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 445556666665555677777653 367888888998 7888888644 56678889999999999999888889999
Q ss_pred cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302 99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL 139 (188)
Q Consensus 99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 139 (188)
+.++++.|. +... |..+..+.++..|+..+|.+.++
T Consensus 103 r~lNl~~N~-l~~~----p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 103 RSLNLRFNP-LNAE----PRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred hhcccccCc-cccc----hHHHHHHHhHHHhcCCCCccccC
Confidence 999998887 5555 34445577777787777766555
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.3e-06 Score=60.87 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=79.7
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcC-CCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYL-TGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
......+|+++ |.+..++.. ..++.|..|.+.+|+|..+.+.+..+ ++|+.|.+.+|. +.++..- +.+..++.
T Consensus 41 ~d~~d~iDLtd--Ndl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl--~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTD--NDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDL--DPLASCPK 114 (233)
T ss_pred ccccceecccc--cchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhc--chhccCCc
Confidence 45667788998 677666643 77889999999999999887777765 679999999997 7776432 34567889
Q ss_pred ccEEEccCCccccc--------CCCCCCCEeccCCC
Q 047302 126 LEELDISGTAIRQL--------SRLCSLTKWDLSDC 153 (188)
Q Consensus 126 L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~ 153 (188)
|++|.+-+|++.+. ..+++|++||.+.=
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999999998776 68889999998754
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.8e-05 Score=58.11 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred cEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302 51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130 (188)
Q Consensus 51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~ 130 (188)
+.+++.+ ..+..+...-....+...+++++|.+..++ .+..++.|.+|.+.+|. ++.+...+ -..+++|+.|.
T Consensus 22 ~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L---~~~~p~l~~L~ 94 (233)
T KOG1644|consen 22 RELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDL---DTFLPNLKTLI 94 (233)
T ss_pred ccccccc--ccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccch---hhhccccceEE
Confidence 3455655 444333332234467888999999998776 67889999999999997 77774322 24568899999
Q ss_pred ccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 131 ISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 131 l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
+.+|+|+++ ..++.|+.|.+-+|.++.
T Consensus 95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 999998887 788999999999998775
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=7.2e-06 Score=67.56 Aligned_cols=103 Identities=26% Similarity=0.265 Sum_probs=82.8
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.++..+++.+ +.++.+...+..+.+|++|++++|.|..+. ++..+..|+.|++.+|. +..+ .++..+.+
T Consensus 93 ~~~~l~~l~l~~--n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~-----~~~~~l~~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYD--NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDI-----SGLESLKS 163 (414)
T ss_pred cccceeeeeccc--cchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhc-----cCCccchh
Confidence 578899999998 788888775688999999999999998887 67788889999999997 6554 34456888
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
|+.+++++|.+... ..+.+++.+.+..|.+..
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 89999999987665 245567778888887664
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.85 E-value=3.5e-05 Score=68.83 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=56.0
Q ss_pred ceecEEEEcccccc--ccccc-ccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 48 TSVGTSIVGNCYKR--IANLE-RFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 48 ~~L~~L~l~~~~~~--i~~l~-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
+.|+.|-+.. +. +..++ +++..|+.|+.||+++| .+..+|..++++-+|++|++++.. +..+ |.+++++
T Consensus 545 ~~L~tLll~~--n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~L----P~~l~~L 617 (889)
T KOG4658|consen 545 PKLRTLLLQR--NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHL----PSGLGNL 617 (889)
T ss_pred CccceEEEee--cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-cccc----chHHHHH
Confidence 3455555555 22 33333 34566666666666665 445666666666666666666654 5544 4445666
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDC 153 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~ 153 (188)
..|.+|++..+.-... ..+++|++|.+...
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666666665542111 34666666666544
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=5.8e-06 Score=66.96 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=21.2
Q ss_pred CCCCcccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302 121 GKVDSLEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~ 157 (188)
+.++.|..|+++.|++.++ ..+++|+.|++..|++.+
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 4555566666666655554 345556666666666543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=7.4e-07 Score=76.26 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=72.6
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
.|...++++ |.+..+...+.-++.++.|+++.|++.... .+..+++|++||++.|. +..+|.-. ...+. |..
T Consensus 165 ~L~~a~fsy--N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~gc~-L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSY--NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLS---MVGCK-LQL 236 (1096)
T ss_pred hHhhhhcch--hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccc---hhhhh-hee
Confidence 455556665 677777777777778888888888887666 67888888888888886 76665322 12233 788
Q ss_pred EEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 129 LDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 129 L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
|++++|.++.+ .++.+|+.||+++|-+..
T Consensus 237 L~lrnN~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 237 LNLRNNALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence 88888877766 677788888888885553
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=2.2e-06 Score=73.43 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=74.8
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
++.++.|+++. |++.... .+..+++|++|||+.|.+..+|..-..-.+|+.|.+++|. ++++ .++.++.+|
T Consensus 186 l~ale~LnLsh--Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL-----~gie~LksL 256 (1096)
T KOG1859|consen 186 LPALESLNLSH--NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTL-----RGIENLKSL 256 (1096)
T ss_pred HHHhhhhccch--hhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhh-----hhHHhhhhh
Confidence 46778888888 6776665 5577888888888888888887543333458888888885 6655 455777888
Q ss_pred cEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 127 EELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 127 ~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
..||++.|-+.+. ..+..|..|.|.+|.+--
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888888876554 666778888888887653
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=1.3e-05 Score=63.21 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=80.7
Q ss_pred ccceecEEEEccccccccc-----ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCcc-CCC
Q 047302 46 YGTSVGTSIVGNCYKRIAN-----LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLEC-LPS 114 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~-l~~ 114 (188)
.-+.|+++..+. |.+.. +...+...+.++.+.+..|.|. .+-..+..+++|++|++.+|. ++. ...
T Consensus 155 ~~~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~ 231 (382)
T KOG1909|consen 155 SKPKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSV 231 (382)
T ss_pred CCcceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHH
Confidence 457899999888 56533 4456677788999999888873 234567889999999999987 322 222
Q ss_pred ccccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCCC
Q 047302 115 PISENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 115 ~~~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~~ 157 (188)
.+.+.+..|++|+.+++++|.++.- ...++|+.+.+.+|.++.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 2345567788899999999987665 557889999999998875
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1e-06 Score=68.25 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=56.0
Q ss_pred ceecEEEEccccccccc--ccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 48 TSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
+.|+.+|++. ..++. +-..+..+.+|+.|.+.|+++. .+-..+.+-.+|+.++++++.++++.... -.+..+.
T Consensus 185 sRlq~lDLS~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSN--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCS 260 (419)
T ss_pred hhhHHhhcch--hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--HHHHhhh
Confidence 3577777776 44422 2334455566666666666664 33444555555666665555544332111 0123334
Q ss_pred cccEEEccCCcccc------------------------------c----CCCCCCCEeccCCCCCCC
Q 047302 125 SLEELDISGTAIRQ------------------------------L----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 125 ~L~~L~l~~~~i~~------------------------------~----~~l~~L~~L~l~~~~l~~ 157 (188)
.|..|+++.|.... + .++++|..||+++|..-.
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 44444444442211 1 688889999999886554
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.9e-05 Score=64.05 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=74.0
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc--hhhhcCCCCcEEEccCCCCCccCCCccccc----
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP--LSVEYLTGLFVLNFKDWQNLECLPSPISEN---- 119 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~---- 119 (188)
.+++|..|++..+ +.+........-+..|+.|+|++|++...+ .-.+.++.|..|+++.+. +.++. .|+.
T Consensus 220 ~fPsl~~L~L~~N-~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~--~~d~~s~~ 295 (505)
T KOG3207|consen 220 TFPSLEVLYLEAN-EIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA--EPDVESLD 295 (505)
T ss_pred hCCcHHHhhhhcc-cccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc--CCCccchh
Confidence 4678888888774 333222222244568899999999887666 357888999999998876 54432 1222
Q ss_pred -cCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 120 -LGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 120 -l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
...+++|++|++..|+|+++ ..+++|+.|.+-.|.+..
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 45678999999999999887 455566666666666553
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=5.9e-05 Score=61.57 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=19.6
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCc-cCcccc
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELP 89 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp 89 (188)
+|+.|.+++| +.+..+|..+ ..+|++|.+++| .+..+|
T Consensus 73 sLtsL~Lsnc-~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENC-NNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCC-CCcccCCchh--hhhhhheEccCcccccccc
Confidence 4555555555 5555555432 235556666555 444444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=4.4e-05 Score=53.02 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=77.7
Q ss_pred eecEEEEccccccccccc---ccccCCCCccEEeecCccCcccchhhhcC-CCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 49 SVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAIRELPLSVEYL-TGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
-+..++++.| .+-.++ ..+..-.+|+..++++|.++..|+.+... +..+.++++.|. +..+ |+.+..++
T Consensus 28 E~h~ldLssc--~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdv----PeE~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSC--QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDV----PEELAAMP 100 (177)
T ss_pred Hhhhcccccc--hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhc----hHHHhhhH
Confidence 3456688886 443333 34455667888899999999888876544 588999999987 6666 55568889
Q ss_pred cccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChh
Q 047302 125 SLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRD 165 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~ 165 (188)
.|+.++++.|.+... ..+.+|..|+...|...+ +|-.
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e----id~d 141 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE----IDVD 141 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc----CcHH
Confidence 999999999987665 347777888888887665 6654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00028 Score=61.65 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=68.6
Q ss_pred ceecEEEEccccccc-ccccccc-cCCCCccEEeecCccCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 48 TSVGTSIVGNCYKRI-ANLERFW-GSMKSLTMLILDGTAIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i-~~l~~~~-~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+|+.|++++- ..+ ...|..+ ..++.|++|.+.+-.+. +.-.-..++++|..||++++. +..+ .+++.+
T Consensus 122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-----~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-----SGISRL 194 (699)
T ss_pred HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-----HHHhcc
Confidence 56778888773 222 3333322 45688888888886653 334445678888888888876 4443 456777
Q ss_pred CcccEEEccCCcccc------cCCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQ------LSRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~------~~~l~~L~~L~l~~~~l~~ 157 (188)
.+|+.|.+.+-.+.. +..|++|+.||+|......
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 888777776665543 2788899999999876554
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.18 E-value=0.00015 Score=57.33 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=54.5
Q ss_pred cceecEEEEccccccc-----ccccccccCCCCccEEeecCccCccc--------------chhhhcCCCCcEEEccCCC
Q 047302 47 GTSVGTSIVGNCYKRI-----ANLERFWGSMKSLTMLILDGTAIREL--------------PLSVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i-----~~l~~~~~~l~~L~~L~l~~~~i~~l--------------p~~~~~l~~L~~L~l~~~~ 107 (188)
++.|+++++|+ |.+ +.+.+.+.++..|++|++.+|.+... ..-...-+.|+++....|+
T Consensus 91 ~~~L~~ldLSD--NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 91 CPKLQKLDLSD--NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred CCceeEeeccc--cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 45777788777 444 22334556677777777777776311 1112344566777666665
Q ss_pred CCccCCCc-cccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCC
Q 047302 108 NLECLPSP-ISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 108 ~l~~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~ 156 (188)
+...+.. +...+...+.|..+.+..|.|... .++++|+.||+++|.++
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 3332211 112233334444444444444332 34555555555555444
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=1.4e-05 Score=61.56 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=24.4
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCC
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDW 106 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 106 (188)
+.+++.|++.+| .+..+... .+|+.|++|.|+-|.|..+. .+..++.|+.|++..|
T Consensus 18 l~~vkKLNcwg~--~L~DIsic-~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 18 LENVKKLNCWGC--GLDDISIC-EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN 73 (388)
T ss_pred HHHhhhhcccCC--CccHHHHH-HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc
Confidence 344444444443 33333322 34444444444444444443 2444444444444444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.07 E-value=0.0015 Score=53.53 Aligned_cols=91 Identities=23% Similarity=0.403 Sum_probs=61.2
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+..++.|++++| .+..+|.. ..+|+.|.+.++ .++.+|..+. .+|+.|.+++|..+..+| .
T Consensus 50 ~~~~l~~L~Is~c--~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP----------~ 112 (426)
T PRK15386 50 EARASGRLYIKDC--DIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP----------E 112 (426)
T ss_pred HhcCCCEEEeCCC--CCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc----------c
Confidence 4678888999985 67777732 346888888875 5666675442 578888888885455442 3
Q ss_pred cccEEEccCCcccccCCCC-CCCEeccCCC
Q 047302 125 SLEELDISGTAIRQLSRLC-SLTKWDLSDC 153 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~~~l~-~L~~L~l~~~ 153 (188)
+|+.|++.++....+..+| +|+.|.+.++
T Consensus 113 sLe~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred ccceEEeCCCCCcccccCcchHhheecccc
Confidence 4666667766665565665 5788877543
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00039 Score=52.96 Aligned_cols=77 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCccEEeecCc--cCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------C
Q 047302 72 MKSLTMLILDGT--AIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------S 140 (188)
Q Consensus 72 l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~ 140 (188)
+++|+.|.++.| ++. .++.....+++|+++++++|+ ++- ..++ ..+..+.+|..|++.+|....+ .
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-cccc-chhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445555555555 333 344344444555555555554 221 1111 2234445555555555554444 3
Q ss_pred CCCCCCEeccC
Q 047302 141 RLCSLTKWDLS 151 (188)
Q Consensus 141 ~l~~L~~L~l~ 151 (188)
.+++|..||-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 44555555443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00049 Score=52.44 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=63.2
Q ss_pred ccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----
Q 047302 65 LERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----- 139 (188)
Q Consensus 65 l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----- 139 (188)
+......+..++.+.+.+..+..+. .+..+++|+.|.++.|. . .....++.....+++|+++++++|.|+.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~-~-~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNY-R-RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCc-c-cccccceehhhhCCceeEEeecCCccccccccch
Confidence 3334455667777777777765443 45568899999999984 1 11222222335569999999999998876
Q ss_pred -CCCCCCCEeccCCCCCCC
Q 047302 140 -SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 140 -~~l~~L~~L~l~~~~l~~ 157 (188)
..+.+|..|++..|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 677889999999997664
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.91 E-value=0.00084 Score=51.89 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=72.0
Q ss_pred ccceecEEEEccccccc-cc----ccccccCCCCccEEeecCccCcccc--------------hhhhcCCCCcEEEccCC
Q 047302 46 YGTSVGTSIVGNCYKRI-AN----LERFWGSMKSLTMLILDGTAIRELP--------------LSVEYLTGLFVLNFKDW 106 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i-~~----l~~~~~~l~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~ 106 (188)
.|++++..++|+ |.+ .. +.+.+.+-..+.+|.+++|.+..+. ....+-+.|++.....|
T Consensus 90 kcp~l~~v~LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 90 KCPRLQKVDLSD--NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cCCcceeeeccc--cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 578899999988 555 22 2345577788999999988874321 11235678888888888
Q ss_pred CCCccCCCcc-ccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCCC
Q 047302 107 QNLECLPSPI-SENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 107 ~~l~~l~~~~-~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~~ 157 (188)
+ +...+... ...+..-..|+.+.+..|.|+.- .++.+|+.||+++|.++.
T Consensus 168 R-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 168 R-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred h-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 6 65554322 12233335777777877777654 577788888888887663
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00012 Score=57.19 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=63.0
Q ss_pred ccceecEEEEccccccccccc--ccccCCCCccEEeecCccCc-ccch-hhhc-CCCCcEEEccCCCCCccCCC-ccccc
Q 047302 46 YGTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIR-ELPL-SVEY-LTGLFVLNFKDWQNLECLPS-PISEN 119 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~-~lp~-~~~~-l~~L~~L~l~~~~~l~~l~~-~~~~~ 119 (188)
.-.+|+.++++.| +++.+.. -.+.+++.|..|+++++... +.-. .+.+ -.+|+.|+++|+. +.+.. .+..-
T Consensus 232 kN~~L~~lnlsm~-sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r--rnl~~sh~~tL 308 (419)
T KOG2120|consen 232 KNSNLVRLNLSMC-SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR--RNLQKSHLSTL 308 (419)
T ss_pred ccccceeeccccc-cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH--hhhhhhHHHHH
Confidence 3457788888888 7776543 34577778888888888653 2211 1222 2566777777764 11111 11111
Q ss_pred cCCCCcccEEEccCCc-cccc-----CCCCCCCEeccCCCCCC
Q 047302 120 LGKVDSLEELDISGTA-IRQL-----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~l~ 156 (188)
...++++..||+++|. ++.- ..++.|++|.++.|...
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 2456777777777763 2221 56677777777777543
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=8.2e-05 Score=57.47 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=66.5
Q ss_pred CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc------CCCCC
Q 047302 71 SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL------SRLCS 144 (188)
Q Consensus 71 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~------~~l~~ 144 (188)
.+.+.+.|+..|+.+.++- ....|+.|++|.++-|. +..+ ..+..|++|++|++..|.|.++ .++++
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 3567889999999998775 46789999999999997 6655 4468899999999999999887 89999
Q ss_pred CCEeccCCCCCC
Q 047302 145 LTKWDLSDCNLP 156 (188)
Q Consensus 145 L~~L~l~~~~l~ 156 (188)
|++|.|..|.=.
T Consensus 90 Lr~LWL~ENPCc 101 (388)
T KOG2123|consen 90 LRTLWLDENPCC 101 (388)
T ss_pred hhhHhhccCCcc
Confidence 999999888543
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.34 E-value=0.002 Score=30.02 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=9.8
Q ss_pred ccEEeecCccCcccchhh
Q 047302 75 LTMLILDGTAIRELPLSV 92 (188)
Q Consensus 75 L~~L~l~~~~i~~lp~~~ 92 (188)
|++|++++|+++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00082 Score=52.54 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=25.1
Q ss_pred CcccEEEccCCccccc-------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+.++.+++.+|.|+++ .++|.|++|++++|++...|+.+|..+.+++.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3444555555555554 455555555555555555555555444444443
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.0092 Score=46.86 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=21.6
Q ss_pred ccceecEEEEccccccccccc---ccccCCCCccEEeecCccC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAI 85 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i 85 (188)
..+.++.+|+.+ |.+..+. ..+.+|+.++.|+++.|++
T Consensus 69 ~~~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 69 SVTDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred Hhhhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcC
Confidence 345666666666 5554333 3445666666666666654
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0028 Score=29.48 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=14.8
Q ss_pred CCCEeccCCCCCCCCCCCCChhhHH
Q 047302 144 SLTKWDLSDCNLPVEGGEIPRDICY 168 (188)
Q Consensus 144 ~L~~L~l~~~~l~~~~~~lp~~l~~ 168 (188)
+|+.|++++|+++. +|..+++
T Consensus 1 ~L~~Ldls~n~l~~----ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS----IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE----EGTTTTT
T ss_pred CccEEECCCCcCEe----CChhhcC
Confidence 47788888887776 7766543
No 66
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.39 E-value=0.057 Score=41.95 Aligned_cols=56 Identities=34% Similarity=0.451 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc--cCcccceecEEEEcc
Q 047302 2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD--HGTYGTSVGTSIVGN 57 (188)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~ 57 (188)
|.+++++.+.+.....+...+.++|++|+||++++..++.. ....+...-+++++.
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~ 59 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK 59 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc
Confidence 67899999888887689999999999999999999877655 333455555666655
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.96 E-value=0.014 Score=25.24 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=8.0
Q ss_pred CCCCEeccCCCCCCC
Q 047302 143 CSLTKWDLSDCNLPV 157 (188)
Q Consensus 143 ~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 356777777777665
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.69 E-value=0.067 Score=25.64 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=12.8
Q ss_pred CCccEEeecCccCcccchh
Q 047302 73 KSLTMLILDGTAIRELPLS 91 (188)
Q Consensus 73 ~~L~~L~l~~~~i~~lp~~ 91 (188)
.+|++|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4567777777777776654
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.69 E-value=0.067 Score=25.64 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=12.8
Q ss_pred CCccEEeecCccCcccchh
Q 047302 73 KSLTMLILDGTAIRELPLS 91 (188)
Q Consensus 73 ~~L~~L~l~~~~i~~lp~~ 91 (188)
.+|++|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4567777777777776654
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.92 E-value=0.12 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.6
Q ss_pred CCCCCEeccCCCCCCCCCCCCChhh
Q 047302 142 LCSLTKWDLSDCNLPVEGGEIPRDI 166 (188)
Q Consensus 142 l~~L~~L~l~~~~l~~~~~~lp~~l 166 (188)
+++|++|++++|+++. +|...
T Consensus 1 L~~L~~L~L~~N~l~~----lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSS----LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc----CCHHH
Confidence 4678899999998887 77653
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.92 E-value=0.12 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.6
Q ss_pred CCCCCEeccCCCCCCCCCCCCChhh
Q 047302 142 LCSLTKWDLSDCNLPVEGGEIPRDI 166 (188)
Q Consensus 142 l~~L~~L~l~~~~l~~~~~~lp~~l 166 (188)
+++|++|++++|+++. +|...
T Consensus 1 L~~L~~L~L~~N~l~~----lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSS----LPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCc----CCHHH
Confidence 4678899999998887 77653
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.29 E-value=0.051 Score=45.11 Aligned_cols=106 Identities=22% Similarity=0.241 Sum_probs=63.3
Q ss_pred cceecEEEEccccccccc--ccccccCCCCccEEeecCc--cCccc----chhhhcCCCCcEEEccCCCCCccCCCcccc
Q 047302 47 GTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGT--AIREL----PLSVEYLTGLFVLNFKDWQNLECLPSPISE 118 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~--~i~~l----p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 118 (188)
++.|+.+.+..| ..+.. +......+++|+.|+++++ .+... ......+.+|++++++++..+... .+..
T Consensus 187 ~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~--~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGC-SKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI--GLSA 263 (482)
T ss_pred CchhhHhhhccc-ccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch--hHHH
Confidence 567777777777 66654 3344466778888888762 21111 123445677788887776532211 1111
Q ss_pred ccCCCCcccEEEccCCc-cccc------CCCCCCCEeccCCCCC
Q 047302 119 NLGKVDSLEELDISGTA-IRQL------SRLCSLTKWDLSDCNL 155 (188)
Q Consensus 119 ~l~~l~~L~~L~l~~~~-i~~~------~~l~~L~~L~l~~~~l 155 (188)
....+++|+.|.+.+|. +++. ..+++|+.|+++.|..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 11236778888777676 5554 6777788888887743
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.00 E-value=0.078 Score=43.46 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=57.4
Q ss_pred cccceecEEEEccccccccccc--ccccCCCCccEEeecCccCc---ccchhhhcCCCCcEEEccCCCCCccCC-Ccccc
Q 047302 45 TYGTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIR---ELPLSVEYLTGLFVLNFKDWQNLECLP-SPISE 118 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~ 118 (188)
.+..+|+.+.++.| ..+.... ..-.++++|+.+++.++... ++-..-.+++.|+++.++-|..++.-. ..+..
T Consensus 317 ~~~~~L~~l~l~~c-~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 317 QHCHNLQVLELSGC-QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred cCCCceEEEecccc-chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 34556666666665 4332211 11134555666665555321 122223445666666655432111100 00001
Q ss_pred ccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCC-CCCCCCCCChhhHHHhhh
Q 047302 119 NLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCN-LPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 119 ~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~-l~~~~~~lp~~l~~l~~L 172 (188)
.-..+..+..+.+.+++.... ..+++|+.+++.+|+ +++ ..+-....+++++
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk--~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK--EAISRFATHLPNI 454 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh--hhhHHHHhhCccc
Confidence 112345566677777764322 566678888887773 333 2233333444444
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.74 E-value=1.3 Score=29.68 Aligned_cols=97 Identities=13% Similarity=0.247 Sum_probs=50.8
Q ss_pred cccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 45 TYGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
+++++|+.+.+.. .++.++ ..+..+.+++.+.+..+ +..++. .+.++.+++.+.+.++ +..++. ..+..
T Consensus 9 ~~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~---~~F~~ 79 (129)
T PF13306_consen 9 YNCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGD---NAFSN 79 (129)
T ss_dssp TT-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-T---TTTTT
T ss_pred hCCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccc---ccccc
Confidence 4677888888874 345555 34577778999988875 666654 4667778889988652 444432 23456
Q ss_pred CCcccEEEccCCccccc-----CCCCCCCEeccCC
Q 047302 123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSD 152 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~ 152 (188)
+++++.+.+..+ +..+ .+. .|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 788888888654 4333 444 677776654
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.57 E-value=0.33 Score=37.99 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=61.0
Q ss_pred ccceecEEEEccccccc----ccc-------cccccCCCCccEEeecCccCc-ccchh----hhcCCCCcEEEccCCCCC
Q 047302 46 YGTSVGTSIVGNCYKRI----ANL-------ERFWGSMKSLTMLILDGTAIR-ELPLS----VEYLTGLFVLNFKDWQNL 109 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i----~~l-------~~~~~~l~~L~~L~l~~~~i~-~lp~~----~~~l~~L~~L~l~~~~~l 109 (188)
+-.+|+..++++ ... .++ -+.+.+|++++..+++.|.+. ..|+. +++-+.|.+|.+.+|. +
T Consensus 56 ~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-l 132 (388)
T COG5238 56 NVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-L 132 (388)
T ss_pred hhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-C
Confidence 345677776665 222 122 234467778888888888775 44433 5666778888887775 3
Q ss_pred ccCCC-ccc---------cccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302 110 ECLPS-PIS---------ENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 110 ~~l~~-~~~---------~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~ 156 (188)
..+.. .+. .....-+.|+......|++... .+ ..|..+.+..|.+.
T Consensus 133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIr 198 (388)
T COG5238 133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIR 198 (388)
T ss_pred CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcC
Confidence 22211 110 1122345677777766665443 22 35777778788766
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.97 E-value=0.011 Score=44.81 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=49.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+...+.+|++. +.+..+...+.-+..+.+++++.|++..+|...+....+..+++.+|. +... |.+.+..+.
T Consensus 40 ~~kr~tvld~~s--~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~----p~s~~k~~~ 112 (326)
T KOG0473|consen 40 SFKRVTVLDLSS--NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQ----PKSQKKEPH 112 (326)
T ss_pred ccceeeeehhhh--hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhC----CccccccCC
Confidence 345556666665 455444444455555666666666666666666666666666665554 4444 333366666
Q ss_pred ccEEEccCCccc
Q 047302 126 LEELDISGTAIR 137 (188)
Q Consensus 126 L~~L~l~~~~i~ 137 (188)
++.++..++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 666666666543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.94 E-value=0.0079 Score=45.64 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=72.5
Q ss_pred cccccc-ccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302 61 RIANLE-RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL 139 (188)
Q Consensus 61 ~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 139 (188)
...++| ..+...+..+.||++.|++..+-..++.++.+..|+++.|+ +..+ |++++....++.+++..|..+..
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~----~~d~~q~~e~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFL----PKDAKQQRETVNAASHKNNHSQQ 103 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhC----hhhHHHHHHHHHHHhhccchhhC
Confidence 344455 23467889999999999998888889999999999999997 6666 55568888888888888877665
Q ss_pred ----CCCCCCCEeccCCCCCC
Q 047302 140 ----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 140 ----~~l~~L~~L~l~~~~l~ 156 (188)
+..+.++.++.-.+.+.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 77788888888888765
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=0.1 Score=38.71 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=44.9
Q ss_pred CccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccC-CCCcccEEEccCCc-cccc-----CCCCCC
Q 047302 74 SLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLG-KVDSLEELDISGTA-IRQL-----SRLCSL 145 (188)
Q Consensus 74 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~-~l~~L~~L~l~~~~-i~~~-----~~l~~L 145 (188)
.++.++.+++.|. +--..+.+++.++.+.+.+|..+..+ .+ +.++ -.++|+.|++++|. |++. ..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HH-HHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3666677777664 22334666777777777776532211 11 1222 23677788888773 6654 566777
Q ss_pred CEeccCCC
Q 047302 146 TKWDLSDC 153 (188)
Q Consensus 146 ~~L~l~~~ 153 (188)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77766544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=0.13 Score=38.13 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=51.3
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccc--ccccccCCCCccEEeecCc-cCccc-chhhhcC
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGT-AIREL-PLSVEYL 95 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l 95 (188)
..+..++.+++ .+...-+... .+++.++.+.+.+| ..+.. +...-.-.++|+.|++++| +|++- -..+..+
T Consensus 101 ~~IeaVDAsds---~I~~eGle~L-~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDS---SIMYEGLEHL-RDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCc---hHHHHHHHHH-hccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 45566666642 2222222222 26788888899988 66533 2221134578999999988 77633 3467888
Q ss_pred CCCcEEEccCC
Q 047302 96 TGLFVLNFKDW 106 (188)
Q Consensus 96 ~~L~~L~l~~~ 106 (188)
++|+.|.+.+-
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 88888887664
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.35 E-value=0.88 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=6.7
Q ss_pred CCCCEeccCCCCCC
Q 047302 143 CSLTKWDLSDCNLP 156 (188)
Q Consensus 143 ~~L~~L~l~~~~l~ 156 (188)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666665544
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.68 E-value=1 Score=21.75 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.3
Q ss_pred CCCCEeccCCCCCCCCCCCCCh
Q 047302 143 CSLTKWDLSDCNLPVEGGEIPR 164 (188)
Q Consensus 143 ~~L~~L~l~~~~l~~~~~~lp~ 164 (188)
++|+.|++++|++++ +|.
T Consensus 2 ~~L~~L~vs~N~Lt~----LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS----LPE 19 (26)
T ss_pred cccceeecCCCcccc----Ccc
Confidence 468888888888887 775
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.38 E-value=0.85 Score=37.81 Aligned_cols=88 Identities=26% Similarity=0.290 Sum_probs=59.7
Q ss_pred cCCCCccEEeecCc-cCcc--cchhhhcCCCCcEEEccCC-CCCccCCCccccccCCCCcccEEEccCCc-cccc-----
Q 047302 70 GSMKSLTMLILDGT-AIRE--LPLSVEYLTGLFVLNFKDW-QNLECLPSPISENLGKVDSLEELDISGTA-IRQL----- 139 (188)
Q Consensus 70 ~~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~-~~l~~l~~~~~~~l~~l~~L~~L~l~~~~-i~~~----- 139 (188)
..++.++.+.+.++ .+.. +-+.....+.|+.++++++ ......+.........+++|+.++++.+. +++.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34678888888887 5554 4456677899999999873 21111111111234567889999999887 7665
Q ss_pred -CCCCCCCEeccCCCC-CCC
Q 047302 140 -SRLCSLTKWDLSDCN-LPV 157 (188)
Q Consensus 140 -~~l~~L~~L~l~~~~-l~~ 157 (188)
..+++|++|.+..|. +++
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~ 284 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD 284 (482)
T ss_pred HhhCCCcceEccCCCCccch
Confidence 568899999988886 554
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.45 E-value=2.3 Score=20.53 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=6.4
Q ss_pred CccEEeecCccCc
Q 047302 74 SLTMLILDGTAIR 86 (188)
Q Consensus 74 ~L~~L~l~~~~i~ 86 (188)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4455555555543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=75.16 E-value=1.7 Score=36.00 Aligned_cols=124 Identities=16% Similarity=0.211 Sum_probs=69.4
Q ss_pred eEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccc--ccccccCCCCccEEeecCccC-cc-----cchhh
Q 047302 21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGTAI-RE-----LPLSV 92 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~~i-~~-----lp~~~ 92 (188)
.|.++.+.++..++ +.-+...+.++..|+.+++..| ..+.. +...-.+++.++.+.++.+.. .+ +....
T Consensus 321 ~L~~l~l~~c~~fs--d~~ft~l~rn~~~Le~l~~e~~-~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 321 NLQVLELSGCQQFS--DRGFTMLGRNCPHLERLDLEEC-GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred ceEEEeccccchhh--hhhhhhhhcCChhhhhhccccc-ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34444445444322 2233344457788888888887 55422 333335677788888876532 22 12223
Q ss_pred hcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCc-ccc-----c-CCCCCCCEecc
Q 047302 93 EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTA-IRQ-----L-SRLCSLTKWDL 150 (188)
Q Consensus 93 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~-i~~-----~-~~l~~L~~L~l 150 (188)
-.+..|.++.++++..+.+. ..+.+..+++|+.+++.++. ++. + .++|++++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDA---TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHH---HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 44667778888877643322 12456677788777777663 222 1 67777665543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.01 E-value=9.7 Score=25.26 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=43.7
Q ss_pred cccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 45 TYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
..+++++.+.+.. + +..++. .+.++..++.+.+.. .+..++. .+..+++++.+.+..+ +..++. ..+..
T Consensus 32 ~~~~~l~~i~~~~--~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~---~~f~~ 102 (129)
T PF13306_consen 32 SNCTSLKSINFPN--N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGS---SSFSN 102 (129)
T ss_dssp TT-TT-SEEEESS--T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHT---TTTTT
T ss_pred ccccccccccccc--c-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEch---hhhcC
Confidence 3577899999876 4 556553 557777899999976 5555543 4666899999998764 344432 22455
Q ss_pred CCcccEEEccC
Q 047302 123 VDSLEELDISG 133 (188)
Q Consensus 123 l~~L~~L~l~~ 133 (188)
. +++.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 5 777777654
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.22 E-value=2.5 Score=20.58 Aligned_cols=15 Identities=40% Similarity=0.335 Sum_probs=12.4
Q ss_pred CCCCEeccCCCCCCC
Q 047302 143 CSLTKWDLSDCNLPV 157 (188)
Q Consensus 143 ~~L~~L~l~~~~l~~ 157 (188)
++|+.|+|++|.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578899999998874
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.67 E-value=3 Score=35.66 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=40.0
Q ss_pred cCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-------
Q 047302 70 GSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL------- 139 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~------- 139 (188)
.+.+.+..+.+++|++..+. .-....++|+.|+|++|....+-...+ +.++.+ .|++|-+.||++-+-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K~k~l-~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DKLKGL-PLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hhhcCC-CHHHeeecCCccccchhhhHHH
Confidence 34556666777777665443 223456777777777763111111111 111222 356666777765332
Q ss_pred -----CCCCCCCEec
Q 047302 140 -----SRLCSLTKWD 149 (188)
Q Consensus 140 -----~~l~~L~~L~ 149 (188)
..+|.|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 3666666665
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.36 E-value=4.6 Score=19.06 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=7.8
Q ss_pred ceecEEEEccccccc
Q 047302 48 TSVGTSIVGNCYKRI 62 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i 62 (188)
++|+.|++++| ..+
T Consensus 2 ~~L~~L~l~~C-~~i 15 (26)
T smart00367 2 PNLRELDLSGC-TNI 15 (26)
T ss_pred CCCCEeCCCCC-CCc
Confidence 45566666666 444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.02 E-value=6.1 Score=33.93 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=39.2
Q ss_pred hcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCC--ccccc---C--CCCCCCEeccCCCCCCC
Q 047302 93 EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGT--AIRQL---S--RLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 93 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~--~i~~~---~--~l~~L~~L~l~~~~l~~ 157 (188)
.+.+.+..+.+++|+ +..+..-. ..-...++|..|+|++| .++.. . ...-|+.|-+.+|.+.+
T Consensus 215 ~n~p~i~sl~lsnNr-L~~Ld~~s-slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR-LYHLDALS-SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccch-hhchhhhh-HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 346777788888886 55543211 11245678888888888 44333 2 22337888888888775
No 90
>PRK07667 uridine kinase; Provisional
Probab=39.29 E-value=61 Score=23.59 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 4 HLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
|++.+-+.+......-..+++-|..|.||+|++..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555444455578999999999999999876544
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=38.02 E-value=1.1 Score=37.91 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=10.5
Q ss_pred cccccCCCCccEEeecCccC
Q 047302 66 ERFWGSMKSLTMLILDGTAI 85 (188)
Q Consensus 66 ~~~~~~l~~L~~L~l~~~~i 85 (188)
...+....+++.++++.|.+
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHhcccchhHHHHHhccc
Confidence 34444455556666666554
No 92
>PRK08118 topology modulation protein; Reviewed
Probab=36.66 E-value=37 Score=24.22 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEecCCCCChhhHhhhhhhccC
Q 047302 21 MIGICDMGGIGKVALAKIVSRDHG 44 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~ 44 (188)
.+-+.|.+|.||+|++..+.+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999998876644
No 93
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=33.15 E-value=47 Score=21.66 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=18.3
Q ss_pred eEEEecCCCCChhhHhhhhhhc
Q 047302 21 MIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
++.+.|..|.||+|+++.+-..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999987654
No 94
>PRK06696 uridine kinase; Validated
Probab=31.96 E-value=1e+02 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHHHHHhC-CCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 5 LEKLTILMDK-GPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 5 ~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
+.++-..+.. ..+.-..+.+.|.+|.||+|++..+...
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555543 3456678999999999999999877654
No 95
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=31.08 E-value=63 Score=23.01 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEEEecCCCCChhhHhhhhhhccCcccceecEEE
Q 047302 21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSI 54 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 54 (188)
.+.+.|++|.||+|++..+.......-.+...||
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 5788999999999999987665332223334444
No 96
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=29.11 E-value=62 Score=23.90 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=25.1
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEE
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSI 54 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 54 (188)
..+..-|++|.||.|+|.++.......-.+...||
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 57888999999999999987665433334444444
No 97
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=27.82 E-value=94 Score=21.81 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhC-CCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDK-GPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++++...+.. ..+.-+.+-+.|..|+||+++...+...
T Consensus 7 ~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 7 EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456677766642 2244588999999999999998765443
No 98
>PRK07261 topology modulation protein; Provisional
Probab=27.61 E-value=93 Score=22.18 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=18.2
Q ss_pred eEEEecCCCCChhhHhhhhhhc
Q 047302 21 MIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
.+.+.|.+|.||+|++..+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999876544
No 99
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=26.84 E-value=64 Score=21.04 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=17.1
Q ss_pred EEEecCCCCChhhHhhhhhhc
Q 047302 22 IGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~ 42 (188)
+.+.|..|.||+|++..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999876554
No 100
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=25.86 E-value=1.5e+02 Score=22.70 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccc---cccccccCCCCccEEeecCc
Q 047302 15 GPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIA---NLERFWGSMKSLTMLILDGT 83 (188)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~---~l~~~~~~l~~L~~L~l~~~ 83 (188)
....+..+=.||-.|+||+++|..+-+..+..+ + .+++ ..++ .+...+.++..-..|.++.-
T Consensus 46 r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~---~--~~sg--~~i~k~~dl~~il~~l~~~~ILFIDEI 110 (233)
T PF05496_consen 46 RGEALDHMLFYGPPGLGKTTLARIIANELGVNF---K--ITSG--PAIEKAGDLAAILTNLKEGDILFIDEI 110 (233)
T ss_dssp TTS---EEEEESSTTSSHHHHHHHHHHHCT--E---E--EEEC--CC--SCHHHHHHHHT--TT-EEEECTC
T ss_pred cCCCcceEEEECCCccchhHHHHHHHhccCCCe---E--eccc--hhhhhHHHHHHHHHhcCCCcEEEEech
Confidence 445678889999999999999998877755433 2 2343 2232 23333345555556666543
No 101
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=24.58 E-value=1.2e+02 Score=22.91 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=23.6
Q ss_pred CceeeEEEecCCCCChhhHhhhhhhccC
Q 047302 17 NDVRMIGICDMGGIGKVALAKIVSRDHG 44 (188)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (188)
.....+++-|-++.||+|+++.+...++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999998887755
No 102
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.44 E-value=1.3e+02 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=29.0
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER 67 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~ 67 (188)
..+.++|-+||||+|+.+.+--+ .-+.=-.+.+.+ ..+..+|.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGf---e~p~~G~I~l~G--~~i~~lpp 74 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGF---EQPSSGEILLDG--EDITDVPP 74 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECC--EECCCCCh
Confidence 46889999999999998876433 233344566666 55555553
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=23.54 E-value=1.9e+02 Score=18.75 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++.+...+... .-..+-++|-.|+||++++..+...
T Consensus 5 ~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 5 EAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4455666555443 2346778999999999999887655
No 104
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=22.63 E-value=87 Score=22.71 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=19.0
Q ss_pred eEEEecCCCCChhhHhhhhhhcc
Q 047302 21 MIGICDMGGIGKVALAKIVSRDH 43 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~ 43 (188)
++++.|-+|.||+|++..+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998775543
No 105
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.42 E-value=2.1e+02 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccccc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLE 66 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~ 66 (188)
.++.+.|-+||||.|+...+--..-..++.--++++.+ ..+..+|
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~--~~l~~lP 73 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE--QRLDMLP 73 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC--eeccccc
Confidence 46889999999999886544333223455666777777 5666555
No 106
>PRK05480 uridine/cytidine kinase; Provisional
Probab=21.23 E-value=96 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.5
Q ss_pred ceeeEEEecCCCCChhhHhhhhhhcc
Q 047302 18 DVRMIGICDMGGIGKVALAKIVSRDH 43 (188)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (188)
.-..+.+.|.+|+||+|++..+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999877653
No 107
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.07 E-value=71 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=21.9
Q ss_pred EEcccccccccccc-cccCCCCccEEeecCccC
Q 047302 54 IVGNCYKRIANLER-FWGSMKSLTMLILDGTAI 85 (188)
Q Consensus 54 ~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i 85 (188)
||++ |.+..+|+ .+..+.+|+.|+|++|.+
T Consensus 1 DLSn--N~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISN--NKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCC--CcCCccChHHhccCCCceEEEeeCCcc
Confidence 3555 67777764 456778888888888876
No 108
>PRK06762 hypothetical protein; Provisional
Probab=20.49 E-value=1.1e+02 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.8
Q ss_pred eeEEEecCCCCChhhHhhhhhhc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..+.+.|..|.||+|++..+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999877654
Done!