Query 047302
Match_columns 188
No_of_seqs 112 out of 2784
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 7.9E-17 2.7E-21 127.0 8.1 133 46-187 148-304 (328)
2 4fcg_A Uncharacterized protein 99.6 2.5E-16 8.7E-21 124.1 6.3 66 46-113 102-167 (328)
3 1p9a_G Platelet glycoprotein I 99.6 9.7E-15 3.3E-19 113.2 10.4 130 46-186 53-197 (290)
4 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 101.4 11.0 129 46-184 50-189 (208)
5 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 106.0 10.2 106 46-157 59-171 (270)
6 4g8a_A TOLL-like receptor 4; l 99.5 9.6E-14 3.3E-18 117.0 10.5 116 49-172 53-175 (635)
7 1ozn_A Reticulon 4 receptor; N 99.5 8.8E-14 3E-18 107.1 9.1 106 47-157 79-191 (285)
8 1ozn_A Reticulon 4 receptor; N 99.5 6.8E-14 2.3E-18 107.7 8.2 106 46-157 54-167 (285)
9 4ezg_A Putative uncharacterize 99.5 1.6E-13 5.6E-18 100.3 9.6 103 47-157 43-151 (197)
10 3rfs_A Internalin B, repeat mo 99.5 3.3E-13 1.1E-17 103.4 11.3 126 20-157 63-195 (272)
11 3m19_A Variable lymphocyte rec 99.5 2.7E-13 9.4E-18 102.6 10.6 117 46-172 57-181 (251)
12 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.5E-18 98.2 7.7 106 46-157 47-161 (168)
13 3rfs_A Internalin B, repeat mo 99.5 4.3E-13 1.5E-17 102.8 10.8 151 20-187 41-208 (272)
14 1h6t_A Internalin B; cell adhe 99.5 2.1E-13 7.1E-18 105.7 9.0 122 20-157 46-170 (291)
15 3zyj_A Leucine-rich repeat-con 99.5 2.8E-13 9.6E-18 110.5 10.1 107 46-157 110-221 (440)
16 2je0_A Acidic leucine-rich nuc 99.5 1.8E-13 6.3E-18 95.5 7.5 105 46-157 15-127 (149)
17 1p9a_G Platelet glycoprotein I 99.4 3.8E-13 1.3E-17 104.2 9.9 117 46-172 75-197 (290)
18 3m19_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 101.7 9.8 106 46-157 81-193 (251)
19 3zyi_A Leucine-rich repeat-con 99.4 2.7E-13 9.3E-18 110.9 9.4 107 46-157 121-232 (452)
20 2o6q_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 101.7 10.5 115 48-172 37-159 (270)
21 1h6u_A Internalin H; cell adhe 99.4 4.4E-13 1.5E-17 104.6 9.6 122 20-157 41-165 (308)
22 2v9t_B SLIT homolog 2 protein 99.4 5.1E-13 1.8E-17 99.4 9.5 105 46-156 54-165 (220)
23 2v9t_B SLIT homolog 2 protein 99.4 4.8E-13 1.6E-17 99.6 9.2 115 48-172 32-154 (220)
24 2ell_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 94.7 9.3 116 46-172 22-149 (168)
25 1xeu_A Internalin C; cellular 99.4 8.2E-13 2.8E-17 100.9 10.1 120 21-157 42-164 (263)
26 2z62_A TOLL-like receptor 4, v 99.4 8.6E-13 3E-17 101.1 10.2 106 46-157 50-163 (276)
27 4b8c_D Glucose-repressible alc 99.4 3.5E-13 1.2E-17 116.5 8.9 113 46-168 222-338 (727)
28 2z66_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 104.3 8.4 104 47-156 77-188 (306)
29 1ogq_A PGIP-2, polygalacturona 99.4 5.5E-13 1.9E-17 104.2 9.2 135 46-187 123-294 (313)
30 3vq2_A TLR4, TOLL-like recepto 99.4 9.1E-13 3.1E-17 111.1 11.1 105 46-156 54-166 (606)
31 1ogq_A PGIP-2, polygalacturona 99.4 1.9E-13 6.5E-18 106.9 6.4 116 46-169 74-197 (313)
32 3rgz_A Protein brassinosteroid 99.4 5.2E-13 1.8E-17 116.0 9.7 61 46-107 488-549 (768)
33 2v70_A SLIT-2, SLIT homolog 2 99.4 9.6E-13 3.3E-17 98.0 9.7 105 46-156 55-166 (220)
34 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 97.4 10.8 116 47-172 39-161 (229)
35 4g8a_A TOLL-like receptor 4; l 99.4 7.4E-13 2.5E-17 111.6 10.0 138 22-172 54-199 (635)
36 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.7E-17 102.4 10.2 122 20-157 63-187 (308)
37 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6E-17 97.1 10.7 125 22-157 42-173 (229)
38 4eco_A Uncharacterized protein 99.4 2.4E-13 8.3E-18 115.8 6.7 115 64-187 197-356 (636)
39 2z66_A Variable lymphocyte rec 99.4 1.4E-13 4.9E-18 106.8 4.5 135 46-187 50-202 (306)
40 2z81_A CD282 antigen, TOLL-lik 99.4 1.4E-12 4.7E-17 108.7 10.5 103 46-157 359-465 (549)
41 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.9E-17 94.8 9.6 105 47-157 30-140 (193)
42 3o53_A Protein LRIM1, AGAP0063 99.4 3.8E-13 1.3E-17 105.3 6.2 88 92-187 140-240 (317)
43 2v70_A SLIT-2, SLIT homolog 2 99.4 2.1E-12 7.3E-17 96.1 9.9 116 47-172 31-155 (220)
44 3oja_A Leucine-rich immune mol 99.4 8.3E-13 2.8E-17 109.3 8.4 105 75-187 122-240 (487)
45 3g39_A Variable lymphocyte rec 99.4 4.7E-12 1.6E-16 90.6 11.1 112 49-172 10-127 (170)
46 1a9n_A U2A', U2A'; complex (nu 99.4 7.8E-13 2.7E-17 95.0 6.9 100 49-154 43-151 (176)
47 2o6s_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 94.0 10.0 116 47-172 27-150 (208)
48 2r9u_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 90.4 11.2 110 51-172 15-130 (174)
49 2wfh_A SLIT homolog 2 protein 99.4 3.6E-12 1.2E-16 93.0 10.1 110 51-172 13-128 (193)
50 4ezg_A Putative uncharacterize 99.4 1.9E-12 6.5E-17 94.6 8.4 115 46-172 64-183 (197)
51 3o6n_A APL1; leucine-rich repe 99.4 4.1E-12 1.4E-16 101.9 11.1 60 46-107 115-176 (390)
52 3rgz_A Protein brassinosteroid 99.4 2.3E-12 7.8E-17 112.0 10.3 118 47-172 393-516 (768)
53 3o6n_A APL1; leucine-rich repe 99.4 1.2E-12 4.1E-17 105.0 7.8 59 47-107 92-152 (390)
54 1w8a_A SLIT protein; signaling 99.4 3.3E-12 1.1E-16 93.1 9.5 104 48-157 29-140 (192)
55 3vq2_A TLR4, TOLL-like recepto 99.4 2.2E-12 7.5E-17 108.8 9.7 133 47-187 31-180 (606)
56 2z7x_B TOLL-like receptor 1, v 99.4 3.2E-12 1.1E-16 106.0 10.6 132 46-187 322-471 (520)
57 1m9s_A Internalin B; cell inva 99.4 2.2E-12 7.6E-17 109.4 9.6 102 46-157 63-167 (605)
58 2id5_A Lingo-1, leucine rich r 99.4 1.8E-12 6E-17 106.5 8.6 117 46-172 54-178 (477)
59 2z80_A TOLL-like receptor 2, v 99.4 5.2E-13 1.8E-17 105.8 5.2 86 47-137 99-187 (353)
60 4ecn_A Leucine-rich repeat pro 99.4 3.5E-13 1.2E-17 118.4 4.6 116 46-171 489-619 (876)
61 1h6t_A Internalin B; cell adhe 99.4 3E-12 1E-16 99.2 9.3 112 46-172 44-158 (291)
62 2z62_A TOLL-like receptor 4, v 99.4 2.9E-12 9.9E-17 98.1 9.2 116 49-172 29-151 (276)
63 3oja_B Anopheles plasmodium-re 99.3 4.9E-12 1.7E-16 107.0 11.1 85 17-107 96-182 (597)
64 2ft3_A Biglycan; proteoglycan, 99.3 3.5E-12 1.2E-16 100.2 9.5 57 47-107 101-158 (332)
65 2xwt_C Thyrotropin receptor; s 99.3 5.2E-13 1.8E-17 100.3 4.5 107 46-157 78-194 (239)
66 3oja_B Anopheles plasmodium-re 99.3 1.6E-12 5.5E-17 109.9 7.9 60 46-107 97-158 (597)
67 1wwl_A Monocyte differentiatio 99.3 6E-13 2E-17 103.9 4.8 60 46-107 119-184 (312)
68 4eco_A Uncharacterized protein 99.3 1.6E-13 5.6E-18 116.9 1.6 116 46-171 247-377 (636)
69 1xeu_A Internalin C; cellular 99.3 4.2E-12 1.4E-16 97.0 9.3 111 46-172 39-152 (263)
70 2xot_A Amphoterin-induced prot 99.3 3.8E-12 1.3E-16 101.3 9.3 106 46-157 62-177 (361)
71 3zyj_A Leucine-rich repeat-con 99.3 4.7E-12 1.6E-16 103.2 9.9 105 47-157 159-269 (440)
72 1w8a_A SLIT protein; signaling 99.3 3.9E-12 1.3E-16 92.7 8.4 112 50-172 10-128 (192)
73 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 88.5 10.9 115 47-171 27-148 (177)
74 1dce_A Protein (RAB geranylger 99.3 5.5E-12 1.9E-16 106.2 10.1 106 49-167 442-553 (567)
75 2z63_A TOLL-like receptor 4, v 99.3 6.4E-12 2.2E-16 105.0 10.3 106 46-157 50-163 (570)
76 1xku_A Decorin; proteoglycan, 99.3 8.5E-12 2.9E-16 97.9 9.7 62 17-86 73-134 (330)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 8.4E-12 2.9E-16 104.6 9.9 132 46-187 351-500 (562)
78 3zyi_A Leucine-rich repeat-con 99.3 8.6E-12 3E-16 102.0 9.6 83 70-157 193-280 (452)
79 2xot_A Amphoterin-induced prot 99.3 1E-11 3.4E-16 98.9 9.7 116 47-172 38-165 (361)
80 1xku_A Decorin; proteoglycan, 99.3 8.6E-12 3E-16 97.8 9.2 48 120-171 212-264 (330)
81 4fmz_A Internalin; leucine ric 99.3 9.7E-12 3.3E-16 98.0 9.1 80 70-156 218-300 (347)
82 2ft3_A Biglycan; proteoglycan, 99.3 1E-11 3.4E-16 97.6 9.0 87 48-137 54-160 (332)
83 2je0_A Acidic leucine-rich nuc 99.3 5.4E-12 1.8E-16 88.0 6.6 122 20-152 17-149 (149)
84 4ecn_A Leucine-rich repeat pro 99.3 2.6E-12 8.8E-17 112.9 5.9 135 46-187 446-622 (876)
85 1wwl_A Monocyte differentiatio 99.3 1.3E-11 4.5E-16 96.2 9.2 106 46-157 93-215 (312)
86 1a9n_A U2A', U2A'; complex (nu 99.3 9.7E-12 3.3E-16 89.2 7.6 116 46-172 17-142 (176)
87 2z80_A TOLL-like receptor 2, v 99.3 5.2E-12 1.8E-16 100.0 6.6 105 47-156 75-187 (353)
88 4fmz_A Internalin; leucine ric 99.3 2.7E-11 9.2E-16 95.4 10.6 107 46-157 64-191 (347)
89 2z81_A CD282 antigen, TOLL-lik 99.3 9.8E-12 3.4E-16 103.6 8.1 116 46-172 332-456 (549)
90 3v47_A TOLL-like receptor 5B a 99.3 2.7E-11 9.1E-16 98.7 10.4 106 46-157 297-409 (455)
91 2id5_A Lingo-1, leucine rich r 99.3 7.7E-12 2.6E-16 102.7 7.3 131 17-157 53-190 (477)
92 1ziw_A TOLL-like receptor 3; i 99.3 3E-11 1E-15 103.2 11.1 106 46-157 47-159 (680)
93 3t6q_A CD180 antigen; protein- 99.2 1.3E-11 4.5E-16 104.1 8.3 106 46-157 55-167 (606)
94 3t6q_A CD180 antigen; protein- 99.2 3.3E-11 1.1E-15 101.6 10.6 127 21-156 255-389 (606)
95 2xwt_C Thyrotropin receptor; s 99.2 4.9E-12 1.7E-16 94.9 4.8 109 46-165 53-174 (239)
96 1m9s_A Internalin B; cell inva 99.2 1.3E-11 4.6E-16 104.6 7.9 112 46-172 41-155 (605)
97 3v47_A TOLL-like receptor 5B a 99.2 3E-11 1E-15 98.4 9.6 115 48-172 275-397 (455)
98 2z63_A TOLL-like receptor 4, v 99.2 3E-11 1E-15 100.9 9.8 117 48-172 28-151 (570)
99 3o53_A Protein LRIM1, AGAP0063 99.2 1.4E-11 4.8E-16 96.3 7.1 117 46-172 142-264 (317)
100 3j0a_A TOLL-like receptor 5; m 99.2 2.3E-11 7.8E-16 106.7 8.3 117 46-169 46-171 (844)
101 1ziw_A TOLL-like receptor 3; i 99.2 5.6E-11 1.9E-15 101.5 10.3 37 121-157 533-574 (680)
102 4glp_A Monocyte differentiatio 99.2 1.8E-11 6E-16 95.4 6.6 129 19-157 144-286 (310)
103 4b8c_D Glucose-repressible alc 99.2 1.3E-11 4.6E-16 106.6 6.2 104 60-172 211-318 (727)
104 2z7x_B TOLL-like receptor 1, v 99.2 6.7E-11 2.3E-15 98.0 10.0 101 48-157 21-129 (520)
105 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 83.8 9.7 112 49-172 8-126 (177)
106 1dce_A Protein (RAB geranylger 99.2 3.7E-11 1.3E-15 101.2 8.4 117 22-150 443-567 (567)
107 1o6v_A Internalin A; bacterial 99.2 7.2E-11 2.5E-15 96.8 9.7 37 121-157 328-367 (466)
108 3j0a_A TOLL-like receptor 5; m 99.2 5.3E-11 1.8E-15 104.4 9.3 118 47-172 23-150 (844)
109 3oja_A Leucine-rich immune mol 99.2 3.4E-11 1.2E-15 99.6 6.7 80 71-156 167-250 (487)
110 4glp_A Monocyte differentiatio 99.2 6.2E-11 2.1E-15 92.3 7.8 106 47-157 90-211 (310)
111 1o6v_A Internalin A; bacterial 99.2 1.2E-10 4.1E-15 95.6 9.8 102 46-157 241-345 (466)
112 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.6E-10 5.4E-15 96.9 10.3 101 48-157 52-160 (562)
113 3bz5_A Internalin-J, INLJ; leu 99.2 1.1E-10 3.9E-15 95.7 9.2 118 20-156 42-161 (457)
114 3g06_A SSPH2 (leucine-rich rep 99.1 8.7E-11 3E-15 99.9 8.5 56 48-112 61-116 (622)
115 3bz5_A Internalin-J, INLJ; leu 99.1 1.2E-10 4.3E-15 95.5 8.8 99 46-157 83-184 (457)
116 2ast_B S-phase kinase-associat 99.1 1.3E-11 4.5E-16 96.7 2.3 121 46-172 116-249 (336)
117 1ds9_A Outer arm dynein; leuci 99.1 9.7E-13 3.3E-17 96.2 -5.0 103 46-157 46-154 (198)
118 1jl5_A Outer protein YOPM; leu 99.1 2.9E-10 9.9E-15 93.3 9.0 96 49-156 132-228 (454)
119 3cvr_A Invasion plasmid antige 99.1 2.7E-10 9.2E-15 95.9 8.8 73 74-157 121-194 (571)
120 1jl5_A Outer protein YOPM; leu 99.1 2.8E-10 9.5E-15 93.4 8.7 104 46-157 151-271 (454)
121 3g06_A SSPH2 (leucine-rich rep 99.1 5.2E-10 1.8E-14 95.1 9.5 77 46-138 79-155 (622)
122 2ast_B S-phase kinase-associat 99.1 1.2E-10 4E-15 91.3 5.1 106 46-154 140-258 (336)
123 1ds9_A Outer arm dynein; leuci 99.0 1.6E-12 5.6E-17 95.0 -5.6 114 49-172 24-142 (198)
124 2ifg_A High affinity nerve gro 99.0 7E-10 2.4E-14 87.5 9.0 98 53-157 13-117 (347)
125 2r9u_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 79.1 8.2 86 47-138 32-119 (174)
126 3g39_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 78.3 8.2 85 47-137 29-115 (170)
127 2ca6_A RAN GTPase-activating p 99.0 2.3E-11 7.9E-16 97.4 -0.9 106 46-156 92-229 (386)
128 3cvr_A Invasion plasmid antige 99.0 3.9E-10 1.3E-14 95.0 6.4 104 49-172 121-232 (571)
129 4ay9_X Follicle-stimulating ho 99.0 5.2E-10 1.8E-14 88.6 5.9 42 140-186 199-248 (350)
130 2ca6_A RAN GTPase-activating p 99.0 5.9E-10 2E-14 89.2 6.1 89 68-157 211-317 (386)
131 4ay9_X Follicle-stimulating ho 98.9 9.2E-10 3.1E-14 87.1 5.5 64 46-112 52-119 (350)
132 1z7x_W Ribonuclease inhibitor; 98.8 1.1E-09 3.6E-14 89.3 2.2 37 120-156 337-383 (461)
133 3goz_A Leucine-rich repeat-con 98.8 1.2E-08 4.1E-13 81.0 7.5 109 46-157 48-181 (362)
134 3goz_A Leucine-rich repeat-con 98.7 2.8E-08 9.6E-13 78.9 7.9 109 46-157 20-152 (362)
135 1z7x_W Ribonuclease inhibitor; 98.7 9.7E-09 3.3E-13 83.6 4.4 107 47-156 27-155 (461)
136 2ifg_A High affinity nerve gro 98.7 4.7E-08 1.6E-12 76.9 7.6 81 76-165 11-98 (347)
137 3un9_A NLR family member X1; l 98.6 2.7E-08 9.3E-13 79.5 4.0 108 47-157 125-253 (372)
138 1io0_A Tropomodulin; LRR prote 98.4 9.7E-08 3.3E-12 68.9 3.0 110 46-157 34-165 (185)
139 3ogk_B Coronatine-insensitive 98.3 1.3E-07 4.4E-12 79.3 2.0 60 46-106 162-230 (592)
140 3un9_A NLR family member X1; l 98.3 2.4E-07 8.2E-12 74.0 3.3 109 46-157 99-225 (372)
141 2p1m_B Transport inhibitor res 98.3 1.3E-07 4.4E-12 79.3 0.2 106 46-153 103-221 (594)
142 3ogk_B Coronatine-insensitive 98.2 1.9E-06 6.5E-11 72.2 6.1 101 49-151 139-251 (592)
143 2p1m_B Transport inhibitor res 98.2 9.4E-08 3.2E-12 80.1 -2.6 57 46-103 182-242 (594)
144 3sb4_A Hypothetical leucine ri 98.1 1.1E-05 3.8E-10 62.9 7.9 80 72-157 225-311 (329)
145 3sb4_A Hypothetical leucine ri 98.0 1.4E-05 4.7E-10 62.4 6.3 95 47-149 225-327 (329)
146 3rw6_A Nuclear RNA export fact 97.9 1.2E-05 4.2E-10 61.3 5.8 62 93-156 167-233 (267)
147 2ra8_A Uncharacterized protein 97.9 1.4E-05 4.7E-10 63.6 5.6 108 46-157 170-293 (362)
148 3e4g_A ATP synthase subunit S, 97.9 8.3E-06 2.8E-10 58.3 3.5 78 74-154 62-150 (176)
149 1io0_A Tropomodulin; LRR prote 97.9 4.6E-06 1.6E-10 60.0 2.1 94 63-157 26-137 (185)
150 3e4g_A ATP synthase subunit S, 97.7 3E-05 1E-09 55.4 4.2 88 47-139 60-155 (176)
151 3rw6_A Nuclear RNA export fact 97.7 2.7E-05 9.3E-10 59.3 3.6 76 70-149 167-257 (267)
152 2ra8_A Uncharacterized protein 97.6 2.9E-05 1E-09 61.7 2.9 115 47-171 192-329 (362)
153 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00053 1.8E-08 49.8 4.4 108 46-155 39-169 (197)
154 4fdw_A Leucine rich hypothetic 96.8 0.0048 1.6E-07 49.5 8.5 57 46-105 178-235 (401)
155 4fdw_A Leucine rich hypothetic 96.4 0.019 6.6E-07 46.0 9.0 83 68-157 266-359 (401)
156 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0021 7E-08 46.6 2.8 89 65-154 33-137 (197)
157 3rfe_A Platelet glycoprotein I 96.2 0.0087 3E-07 40.2 5.2 52 52-107 12-66 (130)
158 3rfe_A Platelet glycoprotein I 96.1 0.012 4.1E-07 39.5 5.5 56 76-137 11-68 (130)
159 4gt6_A Cell surface protein; l 95.4 0.084 2.9E-06 41.8 9.0 98 46-153 263-367 (394)
160 4gt6_A Cell surface protein; l 95.0 0.088 3E-06 41.7 7.7 102 45-155 285-390 (394)
161 4h09_A Hypothetical leucine ri 94.2 0.32 1.1E-05 38.1 9.2 75 70-150 260-340 (379)
162 4fs7_A Uncharacterized protein 92.7 0.42 1.4E-05 37.7 7.7 56 92-153 293-353 (394)
163 2a5y_B CED-4; apoptosis; HET: 92.5 0.18 6.1E-06 42.0 5.4 56 2-57 134-194 (549)
164 4h09_A Hypothetical leucine ri 91.9 0.35 1.2E-05 37.8 6.3 80 46-133 261-342 (379)
165 4fs7_A Uncharacterized protein 90.0 0.63 2.2E-05 36.7 6.1 96 46-152 274-375 (394)
166 3sfz_A APAF-1, apoptotic pepti 85.3 0.98 3.4E-05 40.8 5.0 41 2-42 130-170 (1249)
167 1z6t_A APAF-1, apoptotic prote 83.1 1.5 5.3E-05 36.4 5.0 40 2-41 130-169 (591)
168 1vt4_I APAF-1 related killer D 66.4 5.5 0.00019 36.3 4.1 38 3-41 135-172 (1221)
169 1jbk_A CLPB protein; beta barr 26.6 1E+02 0.0034 20.3 4.6 38 3-42 29-66 (195)
170 2v1u_A Cell division control p 24.8 61 0.0021 24.6 3.5 40 3-42 26-67 (387)
171 2qen_A Walker-type ATPase; unk 24.0 83 0.0028 23.4 4.1 36 3-42 19-54 (350)
172 3lw7_A Adenylate kinase relate 23.9 51 0.0017 21.6 2.6 21 21-42 3-23 (179)
173 2qby_A CDC6 homolog 1, cell di 23.8 60 0.0021 24.6 3.3 40 3-42 27-68 (386)
174 2qby_B CDC6 homolog 3, cell di 23.1 1E+02 0.0035 23.4 4.5 40 3-42 27-68 (384)
175 1odf_A YGR205W, hypothetical 3 23.0 1.1E+02 0.0037 22.9 4.4 28 15-42 27-54 (290)
176 1qhx_A CPT, protein (chloramph 20.5 66 0.0022 21.4 2.6 22 21-42 5-26 (178)
177 2chg_A Replication factor C sm 20.4 1.6E+02 0.0056 19.7 4.8 38 3-42 24-61 (226)
178 1zp6_A Hypothetical protein AT 20.3 69 0.0024 21.6 2.7 22 20-41 10-31 (191)
179 3vaa_A Shikimate kinase, SK; s 20.1 69 0.0024 22.0 2.7 23 20-42 26-48 (199)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=7.9e-17 Score=127.04 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=91.1
Q ss_pred ccceecEEEEccccccccccccccc---------CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWG---------SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI 116 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~---------~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~ 116 (188)
.+++|++|++++| +....+|..+. .+++|++|++++|++..+|..++.+++|++|++++|. +..+
T Consensus 148 ~l~~L~~L~L~~n-~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l---- 221 (328)
T 4fcg_A 148 SLNRLRELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSAL---- 221 (328)
T ss_dssp GCTTCCEEEEEEE-TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCC----
T ss_pred cCcCCCEEECCCC-CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcC----
Confidence 4667777777776 66666665443 3777777777777777777777777788888887776 5544
Q ss_pred ccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh----------hhcCCCCch
Q 047302 117 SENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL----------FKDEPESNS 181 (188)
Q Consensus 117 ~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L----------~~~lp~~~~ 181 (188)
|..++.+++|+.|++++|.+.+. ..+++|+.|++++|++. +.+|..+..+++| .+.+|+++.
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL---LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC---CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch---hhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 34457777788888877765443 56777788888777655 3466666666655 456777777
Q ss_pred hhhccc
Q 047302 182 QIRRNV 187 (188)
Q Consensus 182 ~l~~L~ 187 (188)
++++|+
T Consensus 299 ~L~~L~ 304 (328)
T 4fcg_A 299 QLPANC 304 (328)
T ss_dssp GSCTTC
T ss_pred hccCce
Confidence 776664
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=2.5e-16 Score=124.13 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=51.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLP 113 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~ 113 (188)
.+++|++|++++ +.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|..+..+|
T Consensus 102 ~l~~L~~L~L~~--n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 102 RLSHLQHMTIDA--AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp GGTTCSEEEEES--SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred hCCCCCEEECCC--CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence 477888888888 566678877788888888888888888888788888888888888765444444
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=9.7e-15 Score=113.20 Aligned_cols=130 Identities=24% Similarity=0.256 Sum_probs=83.4
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|++|++++ +.+..++.. ..+++|++|++++|++..+|..+..+++|++|++++|. +..++ |..+..+++
T Consensus 53 ~l~~L~~L~L~~--n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~---~~~~~~l~~ 125 (290)
T 1p9a_G 53 PYTRLTQLNLDR--AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLP---LGALRGLGE 125 (290)
T ss_dssp TCTTCCEEECTT--SCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCC---SSTTTTCTT
T ss_pred cCCCCCEEECCC--CccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccC---HHHHcCCCC
Confidence 467777777777 566666554 66677777777777777777666777777777777775 55553 233566677
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh-HHHhhh---------hhcCCCCchhhhcc
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI-CYLCLL---------FKDEPESNSQIRRN 186 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l-~~l~~L---------~~~lp~~~~~l~~L 186 (188)
|+.|++++|.++.+ ..+++|+.|++++|+++. +|... ..+++| +..+|.++..+.+|
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L 197 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc----cCHHHhcCcCCCCEEECCCCcCCccChhhcccccC
Confidence 77777777776655 456667777777777765 55532 334443 55566665554443
No 4
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.3e-13 Score=101.43 Aligned_cols=129 Identities=25% Similarity=0.295 Sum_probs=96.4
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.++.++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++ +..+..+
T Consensus 50 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l 123 (208)
T 2o6s_A 50 ELTSLTQLYLGG--NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLP---DGVFDKL 123 (208)
T ss_dssp TCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred ccccCcEEECCC--CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccC---HhHhccC
Confidence 578899999998 67777664 457888999999999998877654 6788999999999986 66654 2335788
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh----hhcCCCCchhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL----FKDEPESNSQIR 184 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L----~~~lp~~~~~l~ 184 (188)
++|+.|++++|.+++. ..+++|+.|++++|.+.. -...+..+..- .+.+|++++.+.
T Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 8999999999988776 567889999999998774 23344444322 456777666554
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=106.02 Aligned_cols=106 Identities=21% Similarity=0.336 Sum_probs=59.2
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++. .+..+++|++|++++|.+..+|+. +..+++|++|++++|. +..++ +..+..+
T Consensus 59 ~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l 132 (270)
T 2o6q_A 59 RLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLP---PRVFDSL 132 (270)
T ss_dssp SCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred CCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeC---HHHhCcC
Confidence 456666666666 45555543 235566666666666666655432 4556666666666664 44443 2234555
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.++.. ..+++|+.|++++|.++.
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 5666666666655544 345556666666655554
No 6
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=9.6e-14 Score=117.02 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=72.2
Q ss_pred eecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 49 SVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
++++|++++ |.++.++ ..+.++++|++|++++|+|+.+|+ .+..+++|++|++++|. ++.++ +..+..+++|
T Consensus 53 ~~~~LdLs~--N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~---~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---GGGGTTCTTC
T ss_pred CCCEEEeeC--CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC---HHHhcCCCCC
Confidence 566777776 5666665 345666777777777777766654 36667777777777765 55554 2335666667
Q ss_pred cEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 127 EELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
++|++++|.++.+ +.+++|++|++++|.++. ..+|..+..++.|
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L 175 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL 175 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCcccc--CCCchhhccchhh
Confidence 7777777666554 456666777777666654 3345555555444
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=8.8e-14 Score=107.10 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=49.2
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
+++|++|++++| ..+..+ +..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++ +..++.++
T Consensus 79 l~~L~~L~l~~n-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~ 153 (285)
T 1ozn_A 79 LALLEQLDLSDN-AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALP---DDTFRDLG 153 (285)
T ss_dssp CTTCCEEECCSC-TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred ccCCCEEeCCCC-CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccC---HhHhccCC
Confidence 444444555442 223333 23334444555555555544433 2234445555555555543 33332 12234555
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+|+.|++++|.+++. ..+++|+.|++++|.+..
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 555555555555443 344555555555555553
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=6.8e-14 Score=107.74 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=60.7
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCcc-Cccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTA-IREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.+++|++|++++ +.+..+ +..+..+++|++|++++|. +..+ |..+..+++|++|++++|. +..++ |..+..
T Consensus 54 ~~~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~ 127 (285)
T 1ozn_A 54 ACRNLTILWLHS--NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELG---PGLFRG 127 (285)
T ss_dssp TCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCC---TTTTTT
T ss_pred cCCCCCEEECCC--CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEEC---HhHhhC
Confidence 456666666666 344444 4445566666666666664 5544 4445566666666666665 44332 233455
Q ss_pred CCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+++|++|++++|.++.. ..+++|+.|++++|.++.
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 66666666666665544 345566666666666554
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.6e-13 Score=100.30 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=53.2
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
+++|+.+++++ +.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|. +... .|..+..+++|
T Consensus 43 l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~---~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSD---KIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGG---GSCCCTTCTTC
T ss_pred cCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcc---cChhhcCCCCC
Confidence 44555555555 3455555 3455555555555555554443 45555555555555554 3221 12334555555
Q ss_pred cEEEccCCccccc-----CCCCCCCEeccCCCC-CCC
Q 047302 127 EELDISGTAIRQL-----SRLCSLTKWDLSDCN-LPV 157 (188)
Q Consensus 127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~-l~~ 157 (188)
++|++++|.+++. ..+++|+.|++++|. +.+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc
Confidence 5555555555542 455555555555554 443
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=3.3e-13 Score=103.41 Aligned_cols=126 Identities=24% Similarity=0.330 Sum_probs=72.0
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCC
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTG 97 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 97 (188)
..+..++++++.-..+. .+ ..+++|++|++++ +.+..++. .+..+++|++|++++|++..+|+. +..+++
T Consensus 63 ~~L~~L~l~~n~l~~~~-----~l-~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-----AL-KELTNLTYLILTG--NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTCCEEECTTSCCCCCG-----GG-TTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCCch-----hh-cCCCCCCEEECCC--CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 44555566554432221 11 2566777777777 45555443 346677777777777777655543 566777
Q ss_pred CcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 98 LFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 98 L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
|++|++++|. +..++ +..++.+++|+.|++++|.+++. ..+++|+.|++++|.++.
T Consensus 135 L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 135 LTYLNLAHNQ-LQSLP---KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CCEEECCSSC-CCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCc-cCccC---HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 7777777765 55443 22235556666666666655544 345556666666665553
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=2.7e-13 Score=102.64 Aligned_cols=117 Identities=24% Similarity=0.311 Sum_probs=80.7
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++ ..+..+++|++|++++|++..+|+ .+..+++|++|++++|. +..++ +..+..+
T Consensus 57 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l 130 (251)
T 3m19_A 57 GLTKLTWLNLDY--NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLP---SGVFDRL 130 (251)
T ss_dssp TCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred CcccCCEEECCC--CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcC---hhHhccC
Confidence 577788888887 5665544 345777788888888888876654 35777888888888876 66554 2234677
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L 172 (188)
++|+.|++++|.++.+ ..+++|++|++++|.++. +|. .+..+++|
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 181 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS----VPHGAFDRLGKL 181 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc----cCHHHHhCCCCC
Confidence 7888888888877665 466778888888887775 444 34444444
No 12
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=98.15 Aligned_cols=106 Identities=23% Similarity=0.163 Sum_probs=59.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++|++|++++ +.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++|. +..++. +..+..++
T Consensus 47 ~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLIN--VGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDIST--LEPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEES--SCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGG--GGGGSSCS
T ss_pred hCCCCCEEeCcC--CCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchh--HHHHhcCC
Confidence 455666666666 345444 344556666666666666654 45445556666666666664 444321 13345566
Q ss_pred cccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302 125 SLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~ 157 (188)
+|+.|++++|.+++. ..+++|+.|++++|.+.+
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 666666666655443 345666666666665554
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=4.3e-13 Score=102.76 Aligned_cols=151 Identities=24% Similarity=0.330 Sum_probs=112.0
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchh-hhcCCCC
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGL 98 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 98 (188)
..+..+.+.+.+-..+.. + ..+++|++|++++ +.+..++ .+..+++|++|++++|.+..+++. +..+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~-----l-~~l~~L~~L~l~~--n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-----I-QYLPNVRYLALGG--NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECTT--SCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cceeeeeeCCCCcccccc-----c-ccCCCCcEEECCC--CCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 445555666544332221 1 2589999999999 5777665 568899999999999999987654 6899999
Q ss_pred cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
++|++++|. +..++ +..++.+++|++|++++|.+++. ..+++|+.|++++|.++. +|.. +..+++|
T Consensus 112 ~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L 183 (272)
T 3rfs_A 112 KELVLVENQ-LQSLP---DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGVFDKLTQL 183 (272)
T ss_dssp CEEECTTSC-CCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred CEEECCCCc-CCccC---HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc----cCHHHhcCCccC
Confidence 999999997 66654 33468899999999999998876 578899999999999986 5553 4555555
Q ss_pred ---------hhcCCC-Cchhhhccc
Q 047302 173 ---------FKDEPE-SNSQIRRNV 187 (188)
Q Consensus 173 ---------~~~lp~-~~~~l~~L~ 187 (188)
+..+|. .+..+++|+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCCcCCccCHHHHhCCcCCC
Confidence 444444 355666554
No 14
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.1e-13 Score=105.70 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=76.9
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF 99 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 99 (188)
..+..+.+.+++-..+.. + ..+++|++|++++ +.+..++. +..+++|++|++++|.+..+| .+..+++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~~-----~-~~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-----I-QYLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLK 115 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCC
T ss_pred CcccEEEccCCCcccChh-----H-hcCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCC
Confidence 345555666544333321 1 1467777888877 56666655 577777777777777777665 367777777
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
+|++++|. +..+ ..+..+++|+.|++++|.++++ ..+++|+.|++++|.+..
T Consensus 116 ~L~L~~n~-i~~~-----~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 116 SLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EEECTTSC-CCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred EEECCCCc-CCCC-----hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc
Confidence 77777775 4443 2345666677777776666554 556666666666666665
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=110.48 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=58.8
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++. .+..+++|++|++++|++..+|. .+..+++|+.|++++|..+..++ +..+..+
T Consensus 110 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l 184 (440)
T 3zyj_A 110 GLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---EGAFEGL 184 (440)
T ss_dssp TCSSCCEEECCS--SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTC
T ss_pred CCccCCEEECCC--CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---cchhhcc
Confidence 355666666665 45544443 34555666666666666655443 34555555555555543333332 1234556
Q ss_pred CcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|.++++ ..+++|+.|++++|.++.
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred cccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 6666666666666554 455566666666666554
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.8e-13 Score=95.50 Aligned_cols=105 Identities=22% Similarity=0.308 Sum_probs=86.7
Q ss_pred ccceecEEEEcccccccc--cccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
..++++.+++++| .+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|. +... +|..++.+
T Consensus 15 ~~~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~---~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGG---LEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSC---THHHHHHC
T ss_pred CCccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccch---HHHHhhhC
Confidence 4678999999994 665 7887778899999999999999877 578889999999999987 5542 25555678
Q ss_pred CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.+++. ..+++|++|++++|.++.
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 8999999999988764 778899999999998886
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=3.8e-13 Score=104.24 Aligned_cols=117 Identities=24% Similarity=0.276 Sum_probs=97.8
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++|++|++++ +.+..+|..+..+++|++|++++|++..+| ..+..+++|+.|++++|. +..++ +..+..++
T Consensus 75 ~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l~ 148 (290)
T 1p9a_G 75 TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP---PGLLTPTP 148 (290)
T ss_dssp CCTTCCEEECCS--SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCC---TTTTTTCT
T ss_pred CCCcCCEEECCC--CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccC---hhhccccc
Confidence 678999999999 788889988888999999999999999886 458889999999999997 77664 23457889
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+|+.|++++|.++.+ ..+++|+.|++++|.++. +|..+..+..+
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~----ip~~~~~~~~L 197 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT----IPKGFFGSHLL 197 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCCC
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc----cChhhcccccC
Confidence 999999999998876 567889999999999887 88776655444
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=4e-13 Score=101.71 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=65.0
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++ ..+..+++|++|++++|++..+|+. +..+++|+.|++++|. +..++ +..++.+
T Consensus 81 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l 154 (251)
T 3m19_A 81 DLTELGTLGLAN--NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIP---AGAFDKL 154 (251)
T ss_dssp TCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred cCCcCCEEECCC--CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccC---HHHcCcC
Confidence 456667777766 4555544 3445666677777777766666543 4566667777776665 55443 2234566
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|.++.. ..+++|+.|++++|.+..
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6677777777666554 455666677777666654
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=2.7e-13 Score=110.92 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=54.6
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++. .+..+++|++|++++|++..+|. .+..+++|+.|++++|..+..++ +..+..+
T Consensus 121 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l 195 (452)
T 3zyi_A 121 GLASLNTLELFD--NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---EGAFEGL 195 (452)
T ss_dssp TCTTCCEEECCS--SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTC
T ss_pred CcccCCEEECCC--CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC---hhhccCC
Confidence 345555555555 34444432 23445555555555555554433 34445555555555433333332 1224556
Q ss_pred CcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|.++++ ..+++|+.|++++|.++.
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence 6666666666666554 455556666666666554
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=6.4e-13 Score=101.65 Aligned_cols=115 Identities=22% Similarity=0.331 Sum_probs=95.1
Q ss_pred ceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
++++.|++++ +.+..++. .+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..++ +..+..+++
T Consensus 37 ~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQS--NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP---IGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCS--SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC---TTTTTTCSS
T ss_pred CCCCEEECcC--CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC---HhHcccccC
Confidence 5799999999 67777764 678999999999999999988765 4789999999999997 77665 234678999
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
|+.|++++|.++.. ..+++|++|++++|.++. +|.. +..+++|
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 159 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS----LPKGVFDKLTSL 159 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc----cCHhHccCCccc
Confidence 99999999998776 678999999999999887 6654 4555554
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=4.4e-13 Score=104.65 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=67.4
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF 99 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 99 (188)
..+..+.+.+++-..+.. + ..+++|++|++++ +.+..++. +..+++|++|++++|++..++ .+..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~~-----~-~~l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG-----V-QYLNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred CCcCEEEeeCCCccCchh-----h-hccCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 445555565544333321 1 1466777777777 45655555 566777777777777766655 466666667
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
+|++++|. +..++ .+..+++|+.|++++|.+++. ..+++|+.|++++|.++.
T Consensus 111 ~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 111 TLDLTSTQ-ITDVT-----PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp EEECTTSC-CCCCG-----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCC-CCCch-----hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC
Confidence 77666665 44432 134555555555555554443 344444444444444443
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=5.1e-13 Score=99.44 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=57.5
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+..+++|++|++++|++..+|+. +..+++|+.|++++|. +..++ |..+..+
T Consensus 54 ~l~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~---~~~~~~l 127 (220)
T 2v9t_B 54 PYKKLRRIDLSN--NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLR---VDAFQDL 127 (220)
T ss_dssp TCTTCCEEECCS--SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred CCCCCCEEECCC--CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeC---HHHcCCC
Confidence 355566666665 444443 34455556666666666666555543 3455666666666654 44332 2334555
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~ 156 (188)
++|+.|++++|.++.+ ..+++|+.|++++|.+.
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666666666655544 34555666666666554
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=4.8e-13 Score=99.60 Aligned_cols=115 Identities=22% Similarity=0.229 Sum_probs=96.2
Q ss_pred ceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
++++.|++++ +.+..++. .+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++. ..+..+++
T Consensus 32 ~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~---~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPK---SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCT---TTTTTCTT
T ss_pred cCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCH---hHccCCCC
Confidence 6899999999 78877764 678899999999999999976 6679999999999999997 777752 33578999
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
|+.|++++|.++.. ..+++|+.|++++|.++. ++.. +..+++|
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 154 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT----IAKGTFSPLRAI 154 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE----ECHHHHhCCCCC
Confidence 99999999999876 678899999999999987 5543 4544444
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=6.1e-13 Score=94.67 Aligned_cols=116 Identities=19% Similarity=0.282 Sum_probs=97.2
Q ss_pred ccceecEEEEcccccccc--cccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
..++|+.|++++| .+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|. +... +|..+..+
T Consensus 22 ~~~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGG---LDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSC---CCHHHHHC
T ss_pred CcccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchH---HHHHHhhC
Confidence 5689999999994 676 8888888999999999999999877 678899999999999997 5552 24555679
Q ss_pred CcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCCh----hhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPR----DICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~----~l~~l~~L 172 (188)
++|+.|++++|.++++ ..+++|+.|++++|.++. +|. .+..+++|
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN----LNDYRESVFKLLPQL 149 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT----STTHHHHHHTTCSSC
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc----hHHHHHHHHHhCccC
Confidence 9999999999998774 688999999999999987 666 45555555
No 25
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.2e-13 Score=100.94 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=80.9
Q ss_pred eEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcE
Q 047302 21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFV 100 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 100 (188)
.+..+++.+++-..+.. + ..+++|+.|++++ +.+..++. +..+++|+.|++++|++..+|.. .. ++|++
T Consensus 42 ~L~~L~l~~n~i~~l~~-----l-~~l~~L~~L~L~~--N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAG-----M-QFFTNLKELHLSH--NQISDLSP-LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSR 110 (263)
T ss_dssp TCSEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCE
T ss_pred cCcEEECcCCCcccchH-----H-hhCCCCCEEECCC--CccCCChh-hccCCCCCEEECCCCccCCcCcc-cc-CcccE
Confidence 34555555544333321 1 2467777888877 56666665 57777788888888877776643 22 77788
Q ss_pred EEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 101 LNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 101 L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
|++++|. +..+ +.+..+++|+.|++++|.+++. ..+++|+.|++++|.++.
T Consensus 111 L~L~~N~-l~~~-----~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 111 LFLDNNE-LRDT-----DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECCSSC-CSBS-----GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred EEccCCc-cCCC-----hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence 8887776 5544 2357778888888888877765 677788888888888776
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=8.6e-13 Score=101.06 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=74.1
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++ +..++.+
T Consensus 50 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l 123 (276)
T 2z62_A 50 SFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLE---NFPIGHL 123 (276)
T ss_dssp TCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCST---TCCCTTC
T ss_pred cccCCcEEECCC--CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccC---chhcccC
Confidence 567778888877 46655543 5577777888888888777554 456777788888887776 55443 2235677
Q ss_pred CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|.+++. ..+++|++|++++|.++.
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 7888888888877652 567778888888887775
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=3.5e-13 Score=116.49 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=98.9
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.+|+.|++++ +.+..+|..+..+++|++|+|++|.+..+|..+..+++|++|++++|. +..+ |..++.+++
T Consensus 222 ~l~~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----p~~~~~l~~ 294 (727)
T 4b8c_D 222 DDQLWHALDLSN--LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSL----PAELGSCFQ 294 (727)
T ss_dssp CCCCCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSC----CSSGGGGTT
T ss_pred cCCCCcEEECCC--CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCcc----ChhhcCCCC
Confidence 688999999999 678889887789999999999999999999999999999999999997 7766 555689999
Q ss_pred ccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHH
Q 047302 126 LEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICY 168 (188)
Q Consensus 126 L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~ 168 (188)
|++|++++|.++.+ +.+++|+.|+|++|.++. .+|..+..
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---~~p~~~~~ 338 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK---QFLKILTE 338 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS---HHHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC---CChHHHhh
Confidence 99999999998876 788999999999999984 35555544
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=4.1e-13 Score=104.26 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=55.3
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch--hhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL--SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
+++|++|++++ +.+..+|..+..+++|++|++++|++..++. .+..+++|++|++++|. +.... +..+..++
T Consensus 77 ~~~L~~L~Ls~--n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~ 150 (306)
T 2z66_A 77 TTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF---NGIFNGLS 150 (306)
T ss_dssp CSCCCEEECCS--CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECS---TTTTTTCT
T ss_pred ccccCEEECCC--CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccc---hhhcccCc
Confidence 56666666666 4555566555666666666666666665543 45566666666666664 33221 22234444
Q ss_pred cccEEEccCCcccc--c----CCCCCCCEeccCCCCCC
Q 047302 125 SLEELDISGTAIRQ--L----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 125 ~L~~L~l~~~~i~~--~----~~l~~L~~L~l~~~~l~ 156 (188)
+|+.|++++|.+++ . ..+++|+.|++++|.++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 55555555554433 1 33444444444444443
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=5.5e-13 Score=104.25 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=86.7
Q ss_pred ccceecEEEEcccccccc-cccccccCCCCccEEeecCccCc-ccchhhhcCC-CCcEEEccCCCCCc-cCCCc------
Q 047302 46 YGTSVGTSIVGNCYKRIA-NLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLT-GLFVLNFKDWQNLE-CLPSP------ 115 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~l~-~l~~~------ 115 (188)
.+++|++|++++ +.+. .+|..+..+++|++|++++|++. .+|..+..++ .|+.|++++|. +. ..|..
T Consensus 123 ~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L 199 (313)
T 1ogq_A 123 QIKTLVTLDFSY--NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNL 199 (313)
T ss_dssp GCTTCCEEECCS--SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCC
T ss_pred CCCCCCEEeCCC--CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcc
Confidence 466677777766 3443 55666666666777777766665 5666666665 66666666664 32 12111
Q ss_pred -------------cccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh------
Q 047302 116 -------------ISENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL------ 172 (188)
Q Consensus 116 -------------~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L------ 172 (188)
.|..+..+++|+.|++++|.++.. ..+++|++|++++|.++ +.+|..+..++.|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECC
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc---CcCChHHhcCcCCCEEECc
Confidence 145567777888888888877643 56778888889888887 2378877777766
Q ss_pred ---h-hcCCCCchhhhccc
Q 047302 173 ---F-KDEPESNSQIRRNV 187 (188)
Q Consensus 173 ---~-~~lp~~~~~l~~L~ 187 (188)
+ +.+|.. .++++|+
T Consensus 277 ~N~l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFD 294 (313)
T ss_dssp SSEEEEECCCS-TTGGGSC
T ss_pred CCcccccCCCC-ccccccC
Confidence 3 356664 5555553
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=9.1e-13 Score=111.13 Aligned_cols=105 Identities=26% Similarity=0.311 Sum_probs=49.7
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+.++++|++|++++|.+..+ |..++.+++|++|++++|. +..++ +..++.+
T Consensus 54 ~l~~L~~L~Ls~--n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l 127 (606)
T 3vq2_A 54 NFSELQWLDLSR--CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLE---SFPIGQL 127 (606)
T ss_dssp TCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSS---SSCCTTC
T ss_pred CCccCcEEeCCC--CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-ccccc---ccccCCC
Confidence 345555555555 233333 23344555555555555555443 3344555555555555554 33332 1223455
Q ss_pred CcccEEEccCCccccc------CCCCCCCEeccCCCCCC
Q 047302 124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~ 156 (188)
++|++|++++|.+.+. +.+++|++|++++|.++
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 5555555555554421 44555555555555544
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=1.9e-13 Score=106.91 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=79.5
Q ss_pred ccceecEEEEccccccc-ccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRI-ANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i-~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|+++++ +.+ ..+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|. +.. .+|..+..+
T Consensus 74 ~l~~L~~L~L~~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~---~~p~~~~~l 148 (313)
T 1ogq_A 74 NLPYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSG---TLPPSISSL 148 (313)
T ss_dssp GCTTCSEEEEEEE-TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EES---CCCGGGGGC
T ss_pred CCCCCCeeeCCCC-CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCC---cCChHHhcC
Confidence 5778888888743 344 467777777888888888888876 677777888888888888876 441 124555777
Q ss_pred CcccEEEccCCccccc-----CCCC-CCCEeccCCCCCCCCCCCCChhhHHH
Q 047302 124 DSLEELDISGTAIRQL-----SRLC-SLTKWDLSDCNLPVEGGEIPRDICYL 169 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~-~L~~L~l~~~~l~~~~~~lp~~l~~l 169 (188)
++|++|++++|.+++. ..++ +|+.|++++|.+. +.+|..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l 197 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANL 197 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCC
Confidence 7788888887777632 4555 6777777777766 2255555444
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=5.2e-13 Score=115.99 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=37.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~ 107 (188)
.+++|++|++++| .....+|..+..+++|++|++++|++. .+|..+..+++|+.+++++|.
T Consensus 488 ~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 488 NCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 4556666666663 222355655566666666666666665 556666666666666666664
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=9.6e-13 Score=97.95 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=65.7
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++. .+..+++|++|++++|.+..+++. +..+++|++|++++|. +..++ |..+..+
T Consensus 55 ~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l 128 (220)
T 2v70_A 55 KLPQLRKINFSN--NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVG---NDSFIGL 128 (220)
T ss_dssp GCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBC---TTSSTTC
T ss_pred cCCCCCEEECCC--CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeEC---HhHcCCC
Confidence 466677777766 45555543 456666777777777766655443 5666777777777665 44442 3344666
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~ 156 (188)
++|+.|++++|.++.. ..+++|+.|++++|.+.
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6677777777766554 45666777777777665
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.5e-12 Score=97.45 Aligned_cols=116 Identities=28% Similarity=0.383 Sum_probs=95.5
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.++|++|++++ +.+..+ |..+..+++|++|++++|++..+|.. +..+++|++|++++|. +..++ +..+..++
T Consensus 39 ~~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~---~~~~~~l~ 112 (229)
T 3e6j_A 39 PTNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLP---SAVFDRLV 112 (229)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred CCCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccC---hhHhCcch
Confidence 47899999999 577665 56678999999999999999988754 6889999999999997 77664 23357899
Q ss_pred cccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302 125 SLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL 172 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L 172 (188)
+|+.|++++|.++.+ ..+++|++|++++|.++. +|. .+..+++|
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 161 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS----IPHGAFDRLSSL 161 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc----cCHHHHhCCCCC
Confidence 999999999999877 688899999999999987 664 35555555
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=7.4e-13 Score=111.60 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=107.3
Q ss_pred EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCc
Q 047302 22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLF 99 (188)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 99 (188)
+..+++++..-..+.... +..+++|++|++++ +.++.+++ .+.++++|++|++++|+++.+|+. +..+++|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~--N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp CCEEECTTSCCCEECTTT----TTTCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCC--CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 555666654433332221 23689999999999 68888765 578999999999999999988764 78999999
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+|++++|. +..++ +..++.+++|++|++++|.++.. ..+++|++|++++|+++. -.|..+..+..+
T Consensus 128 ~L~Ls~N~-l~~l~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~l 199 (635)
T 4g8a_A 128 KLVAVETN-LASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQM 199 (635)
T ss_dssp EEECTTSC-CCCST---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE---ECGGGGHHHHTC
T ss_pred EEECCCCc-CCCCC---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc---cccccccchhhh
Confidence 99999997 77765 23468999999999999998754 678999999999999986 234456666554
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=1.1e-12 Score=102.38 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=72.0
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF 99 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 99 (188)
..+..++++++.-..+.. + ..+++|++|++++ +.+..++. +..+++|++|++++|++..++. +..+++|+
T Consensus 63 ~~L~~L~L~~n~i~~~~~-----~-~~l~~L~~L~L~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-----L-KNLTKITELELSG--NPLKNVSA-IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-----G-TTCCSCCEEECCS--CCCSCCGG-GTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred CCCCEEEccCCcCCCChh-----H-ccCCCCCEEEccC--CcCCCchh-hcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 445555555544333322 1 2567777777777 45655553 4667777777777777766653 66677777
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
+|++++|. +..++ . +..+++|+.|++++|.+++. ..+++|+.|++++|.++.
T Consensus 133 ~L~l~~n~-l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 133 VLYLDLNQ-ITNIS----P-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EEECCSSC-CCCCG----G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCc-cCcCc----c-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc
Confidence 77777765 44332 1 45556666666666665554 455556666666665554
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.8e-12 Score=97.07 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=99.7
Q ss_pred EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCc
Q 047302 22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLF 99 (188)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~ 99 (188)
+..+++.+..-..+... . ...+++|++|++++ +.+..++. .+..+++|++|++++|++..+|+. +..+++|+
T Consensus 42 L~~L~Ls~n~i~~~~~~---~-~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPG---V-FDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CSEEECCSSCCCCCCTT---T-TTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEcCCCccCccCHH---H-hhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 45555555443333211 1 12689999999999 68888774 458899999999999999988765 68899999
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+|++++|. +..+ |..+..+++|+.|++++|.++.+ ..+++|+.|++++|.+..
T Consensus 116 ~L~Ls~N~-l~~l----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 116 ELFMCCNK-LTEL----PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp EEECCSSC-CCSC----CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred eEeccCCc-cccc----CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999997 7766 45568999999999999998876 678899999999999885
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=2.4e-13 Score=115.84 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=88.4
Q ss_pred cccccccCCCCccEEeecCccCcc------------------cchhhh--cCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 64 NLERFWGSMKSLTMLILDGTAIRE------------------LPLSVE--YLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 64 ~l~~~~~~l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+|..+.++++|++|++++|.+.. +|..++ .+++|++|++++|.-...+ |..++.+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l 272 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL----PTFLKAL 272 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC----CTTTTTC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC----hHHHhcC
Confidence 367778889999999999999886 888888 8999999999998733333 5667889
Q ss_pred CcccEEEccCCc-ccc--c----CCC------CCCCEeccCCCCCCCCCCCCCh--hhHHHhhh---------hh-cCCC
Q 047302 124 DSLEELDISGTA-IRQ--L----SRL------CSLTKWDLSDCNLPVEGGEIPR--DICYLCLL---------FK-DEPE 178 (188)
Q Consensus 124 ~~L~~L~l~~~~-i~~--~----~~l------~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L---------~~-~lp~ 178 (188)
++|++|++++|. +++ + +.+ ++|++|++++|+++. +|. .++.+++| +. .+|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~----ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT----FPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS----CCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc----cCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999997 765 2 333 889999999998887 887 77777666 33 677
Q ss_pred Cchhhhccc
Q 047302 179 SNSQIRRNV 187 (188)
Q Consensus 179 ~~~~l~~L~ 187 (188)
.+..+++|+
T Consensus 348 ~~~~l~~L~ 356 (636)
T 4eco_A 348 AFGSEIKLA 356 (636)
T ss_dssp CCEEEEEES
T ss_pred hhCCCCCCC
Confidence 566655554
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=1.4e-13 Score=106.84 Aligned_cols=135 Identities=18% Similarity=0.092 Sum_probs=93.6
Q ss_pred ccceecEEEEcccccccccc---cccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL---ERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l---~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.+++|++|++++ +.+..+ +..+..+++|++|++++|.+..+|..+..+++|++|++++|. +..++. +..+..
T Consensus 50 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~ 124 (306)
T 2z66_A 50 KLTQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE--FSVFLS 124 (306)
T ss_dssp TCTTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTT--TTTTTT
T ss_pred ccccCCEEECCC--CccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-cccccc--chhhhh
Confidence 577888888887 565443 445566788888888888888887778888888888888886 555532 124577
Q ss_pred CCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcC-CCCchhhhccc
Q 047302 123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDE-PESNSQIRRNV 187 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~l-p~~~~~l~~L~ 187 (188)
+++|++|++++|.+... ..+++|++|++++|.+.. ..+|..+..+++| +..+ |.++..+++|+
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 88888888888887654 567888999998887763 2345555555544 3333 55555555553
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=1.4e-12 Score=108.74 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=57.3
Q ss_pred ccceecEEEEccccccccccc---ccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.+++|++|++++ +.++.++ ..+..+++|++|++++|++..+|..+..+++|++|++++|. +..++..+
T Consensus 359 ~l~~L~~L~Ls~--N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~------ 429 (549)
T 2z81_A 359 AWPSLQTLVLSQ--NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI------ 429 (549)
T ss_dssp SSTTCCEEECTT--SCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS------
T ss_pred ccccCcEEEccC--CcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchh------
Confidence 455666666665 3444443 23455666666666666666666555556666666666665 44443222
Q ss_pred CCcccEEEccCCccccc-CCCCCCCEeccCCCCCCC
Q 047302 123 VDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~ 157 (188)
.++|+.|++++|.+++. ..+++|+.|++++|+++.
T Consensus 430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ 465 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT 465 (549)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred cCCceEEECCCCChhhhcccCChhcEEECCCCccCc
Confidence 13445555555554444 456667777777776665
No 41
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=94.76 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=90.3
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
..++++|++++ +.+..+|..+..+++|++|++++|.+..+++ .+..+++|++|++++|. +..++ |..+..+++
T Consensus 30 ~~~l~~L~L~~--n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~---~~~f~~l~~ 103 (193)
T 2wfh_A 30 PRDVTELYLDG--NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIP---PRTFDGLKS 103 (193)
T ss_dssp CTTCCEEECCS--SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC---TTTTTTCTT
T ss_pred CCCCCEEECCC--CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeC---HHHhCCCCC
Confidence 35799999999 7888898888999999999999999997764 58899999999999997 77665 345688999
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.++.+ ..+++|+.|++++|.+.-
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999998876 578899999999998764
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=3.8e-13 Score=105.25 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=54.4
Q ss_pred hhcCCCCcEEEccCCCCCccCCCcccccc-CCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhH
Q 047302 92 VEYLTGLFVLNFKDWQNLECLPSPISENL-GKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDIC 167 (188)
Q Consensus 92 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~ 167 (188)
+..+++|++|++++|. +...+ +..+ ..+++|++|++++|.+++. ..+++|+.|++++|.++. +|..+.
T Consensus 140 ~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~ 211 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNE-IDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----MGPEFQ 211 (317)
T ss_dssp TGGGSSEEEEECTTSC-CCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----ECGGGG
T ss_pred hhccCCCCEEECCCCC-CCccc---HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc----chhhhc
Confidence 4445555555555554 33221 2222 3466777777777776665 456778888888888876 777776
Q ss_pred HHhhh---------hhcCCCCchhhhccc
Q 047302 168 YLCLL---------FKDEPESNSQIRRNV 187 (188)
Q Consensus 168 ~l~~L---------~~~lp~~~~~l~~L~ 187 (188)
.+++| +..+|..+..+++|+
T Consensus 212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (317)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred ccCcccEEECcCCcccchhhHhhcCCCCC
Confidence 66666 556777666666554
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=2.1e-12 Score=96.05 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=96.3
Q ss_pred cceecEEEEccccccccccc--ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
...+++|++++ +.+..++ ..+..+++|++|++++|++..+++ .+..+++|++|++++|. +..++ +..+..+
T Consensus 31 ~~~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l 104 (220)
T 2v70_A 31 PQYTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQ---HKMFKGL 104 (220)
T ss_dssp CTTCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC---GGGGTTC
T ss_pred CCCCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccC---HhHhcCC
Confidence 34678999999 6887774 346899999999999999998765 68999999999999997 76664 3457889
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCC-ChhhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEI-PRDICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~l-p~~l~~l~~L 172 (188)
++|+.|++++|.++.. ..+++|+.|++++|.++. + |..+..+++|
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 155 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----VAPGAFDTLHSL 155 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----BCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE----ECHHHhcCCCCC
Confidence 9999999999998876 678899999999999986 5 5566666555
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=8.3e-13 Score=109.28 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=63.5
Q ss_pred ccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccC-CCCcccEEEccCCccccc---CCCCCCCEec
Q 047302 75 LTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLG-KVDSLEELDISGTAIRQL---SRLCSLTKWD 149 (188)
Q Consensus 75 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~-~l~~L~~L~l~~~~i~~~---~~l~~L~~L~ 149 (188)
|+.|++++|.+..+ |..++.+++|++|++++|. +...+ |..+. .+++|+.|++++|.+++. ..+++|+.|+
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 197 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcC---hHHHhhhCCcccEEecCCCccccccccccCCCCCEEE
Confidence 33334444444322 2234555666666666654 33221 33333 567777777777777665 4577888888
Q ss_pred cCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhccc
Q 047302 150 LSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRNV 187 (188)
Q Consensus 150 l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L~ 187 (188)
+++|.++. +|+.+..++.| +..+|.++..+++|+
T Consensus 198 Ls~N~l~~----~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 198 LSSNKLAF----MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp CCSSCCCE----ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred CCCCCCCC----CCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 88888887 77777776666 556777776666553
No 45
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=4.7e-12 Score=90.57 Aligned_cols=112 Identities=26% Similarity=0.274 Sum_probs=90.7
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
+.+.+++++ +.++.+|..+ .+++++|++++|++..+ |..+..+++|++|++++|. +..++ +..+..+++|+
T Consensus 10 ~~~~l~~s~--n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~---~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSG--KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP---AGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTT--SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---TTTTTTCTTCC
T ss_pred CCCEEEeCC--CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccC---hhhccCCCCCC
Confidence 457889998 7888888754 37899999999999977 5568899999999999997 77765 23457899999
Q ss_pred EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
.|++++|.++.+ ..+++|+.|++++|.+.- .+..+.++...
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c----~c~~l~~l~~~ 127 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC----ACSDILYLSRW 127 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT----TBGGGHHHHHH
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC----CchhHHHHHHH
Confidence 999999998876 578899999999999886 45545554443
No 46
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7.8e-13 Score=94.97 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=48.4
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhh-hcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
+|++|++++ +.+..+ ..+..+++|++|++++|.+..+|+.+ ..+++|++|++++|. +..++. ...+..+++|+
T Consensus 43 ~L~~L~Ls~--N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSD--NEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGD--LDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCS--SCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGG--GGGGGGCTTCC
T ss_pred CCCEEECCC--CCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchh--hHhhhcCCCCC
Confidence 555555555 344444 23345555555555555555544332 455555555555554 333321 01334455555
Q ss_pred EEEccCCccccc--------CCCCCCCEeccCCCC
Q 047302 128 ELDISGTAIRQL--------SRLCSLTKWDLSDCN 154 (188)
Q Consensus 128 ~L~l~~~~i~~~--------~~l~~L~~L~l~~~~ 154 (188)
.|++++|.+... ..+++|+.|+++.|.
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555554433 344555555555554
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.2e-12 Score=93.98 Aligned_cols=116 Identities=26% Similarity=0.376 Sum_probs=95.5
Q ss_pred cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++++|++++ +.+..++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++ +..+..++
T Consensus 27 ~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~---~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP---NGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred CCCCcEEEcCC--CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccC---HhHhcCcc
Confidence 56899999999 67777664 468899999999999999988765 6889999999999997 77664 23468899
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
+|++|++++|.++.+ ..+++|++|++++|.++. +|.. +..+++|
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L 150 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----VPDGVFDRLTSL 150 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----eCHHHhccCCCc
Confidence 999999999998876 578899999999999986 6654 4555555
No 48
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=6.1e-12 Score=90.36 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=91.0
Q ss_pred cEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEE
Q 047302 51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129 (188)
Q Consensus 51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L 129 (188)
+.+++++ +.++.+|..+. .++++|++++|++..+ |..+..+++|++|++++|. +..++. ..+..+++|+.|
T Consensus 15 ~~l~~~~--n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~---~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQN--IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPT---GVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCS--SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEE
T ss_pred cEEEeCC--CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccCh---hHhCCcchhhEE
Confidence 5788888 78888887543 7899999999999977 5568899999999999997 777652 235789999999
Q ss_pred EccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 130 DISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 130 ~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
++++|.++.+ ..+++|+.|++++|.+.. .+..+.++...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c----~~~~~~~l~~~ 130 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC----ECRDIMYLRNW 130 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT----TBGGGHHHHHH
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccc----ccccHHHHHHH
Confidence 9999998876 578899999999999987 67666666655
No 49
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.6e-12 Score=93.04 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=92.4
Q ss_pred cEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302 51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130 (188)
Q Consensus 51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~ 130 (188)
+.+++++ +.++.+|..+ ..++++|++++|++..+|..+..+++|+.|++++|. +..++ +..+..+++|+.|+
T Consensus 13 ~~l~~~~--~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~---~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSN--KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLS---NQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTT--SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCC---TTTTTTCTTCCEEE
T ss_pred CEEEcCC--CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeC---HhHccCCCCCCEEE
Confidence 5678888 7888888654 368999999999999999899999999999999997 77664 34578999999999
Q ss_pred ccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 131 ISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 131 l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
+++|.++.+ ..+++|+.|++++|.++. +|.. +..+++|
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 128 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFNDLSAL 128 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTTTCTTC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCe----eChhhhhcCccc
Confidence 999999887 678999999999999997 6664 4555544
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.9e-12 Score=94.57 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=92.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++|++|++++ +.+..++ .+..+++|++|++++|++.. .|..+..+++|++|++++|. +.. ..|..++.++
T Consensus 64 ~l~~L~~L~l~~--n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~---~~~~~l~~l~ 136 (197)
T 4ezg_A 64 YAHNIKDLTINN--IHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDD---SILTKINTLP 136 (197)
T ss_dssp GCTTCSEEEEES--CCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBG---GGHHHHTTCS
T ss_pred cCCCCCEEEccC--CCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCc---HhHHHHhhCC
Confidence 588999999999 5666665 45889999999999999984 67788999999999999987 443 1256678899
Q ss_pred cccEEEccCCc-cccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 125 SLEELDISGTA-IRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 125 ~L~~L~l~~~~-i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+|+.|++++|. ++++ ..+++|+.|++++|.+++ ++ .+..+++|
T Consensus 137 ~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~----~~-~l~~l~~L 183 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD----YR-GIEDFPKL 183 (197)
T ss_dssp SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC----CT-TGGGCSSC
T ss_pred CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC----hH-HhccCCCC
Confidence 99999999997 7766 788899999999999887 55 55554444
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=4.1e-12 Score=101.86 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred ccceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 107 (188)
.+++|++|++++ +.+..+|.. +..+++|++|++++|++..+++ .+..+++|++|++++|.
T Consensus 115 ~l~~L~~L~L~~--n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 115 NVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCC--CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 455666666666 455555543 3555666666666666554432 35555555555555553
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=2.3e-12 Score=111.97 Aligned_cols=118 Identities=25% Similarity=0.186 Sum_probs=55.5
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
+++|++|++++| .....+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|. +. ..+|..++.+++
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~---~~~p~~~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LE---GEIPQELMYVKT 467 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CC---SCCCGGGGGCTT
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-cc---CcCCHHHcCCCC
Confidence 344555555553 222244444555555555555555554 445555555555555555554 22 111333344555
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|+.|++++|.+++. ..+++|+.|++++|.+. +.+|..++.+++|
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L 516 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT---GEIPKWIGRLENL 516 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC---SCCCGGGGGCTTC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC---CcCChHHhcCCCC
Confidence 55555555544422 34444555555555444 2244444444433
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=1.2e-12 Score=105.00 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=27.0
Q ss_pred cceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 107 (188)
+++|++|++++ +.+..++ ..+..+++|++|++++|++..+|.. +..+++|++|++++|.
T Consensus 92 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 92 AHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp CTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCEEECCC--CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 44455555554 2333332 2334445555555555555444433 2444555555555443
No 54
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=3.3e-12 Score=93.05 Aligned_cols=104 Identities=14% Similarity=0.262 Sum_probs=89.9
Q ss_pred ceecEEEEcccccccccccc--cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 48 TSVGTSIVGNCYKRIANLER--FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.++++|++++ +.+..++. .+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++ +..+..++
T Consensus 29 ~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEIS---NKMFLGLH 102 (192)
T ss_dssp TTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEEC---SSSSTTCT
T ss_pred CCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccC---HHHhcCCC
Confidence 3899999999 68877775 378999999999999999976 6679999999999999997 76664 34468899
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+|+.|++++|.++.. ..+++|+.|++++|.+.-
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999998876 678899999999999884
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=2.2e-12 Score=108.81 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=106.7
Q ss_pred cceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++++|++++ +.+..++. .+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++ |..++.++
T Consensus 31 ~~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~---p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSF--NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFS---PGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCC---TTSSTTCT
T ss_pred CCCcCEEECCC--CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccC---hhhcCCcc
Confidence 36899999999 67766654 778999999999999999877 5568899999999999997 66553 45678999
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhc-CCCCchhhhccc
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKD-EPESNSQIRRNV 187 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~-lp~~~~~l~~L~ 187 (188)
+|++|++++|.+++. +.+++|++|++++|.+.. ..+|..++++++| +.. .|..+..+.+|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC--CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc--eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 999999999988765 788899999999999885 4588888888777 333 355677776654
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=3.2e-12 Score=105.97 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=103.6
Q ss_pred ccceecEEEEccccccccc-ccccccCCCCccEEeecCccCcc---cchhhhcCCCCcEEEccCCCCCcc-CCCcccccc
Q 047302 46 YGTSVGTSIVGNCYKRIAN-LERFWGSMKSLTMLILDGTAIRE---LPLSVEYLTGLFVLNFKDWQNLEC-LPSPISENL 120 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l 120 (188)
.+++|++|++++ +.+.. .|..+..+++|++|++++|++.. +|..+..+++|++|++++|. +.. +|. ..+
T Consensus 322 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~---~~~ 395 (520)
T 2z7x_B 322 KISPFLHLDFSN--NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK---GDC 395 (520)
T ss_dssp SCCCCCEEECCS--SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG---CSC
T ss_pred hCCcccEEEeEC--CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCccccc---chh
Confidence 678999999999 45544 67777899999999999999985 45668899999999999997 554 431 235
Q ss_pred CCCCcccEEEccCCccccc--CCC-CCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC-chhhhccc
Q 047302 121 GKVDSLEELDISGTAIRQL--SRL-CSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES-NSQIRRNV 187 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~--~~l-~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~-~~~l~~L~ 187 (188)
..+++|+.|++++|.+++. ..+ ++|+.|++++|+++. +|..+..+++| +..+|.. +..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~----ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS----IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc----cchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 7788999999999988654 344 689999999999887 88887777776 6677876 66666654
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.2e-12 Score=109.37 Aligned_cols=102 Identities=24% Similarity=0.372 Sum_probs=55.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|+.|++++ +.+..++. +..+++|+.|++++|.+..+| .+..+++|+.|++++|. +..+ +.+..+++
T Consensus 63 ~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~ 132 (605)
T 1m9s_A 63 YLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQ 132 (605)
T ss_dssp GCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCC-----GGGGGCTT
T ss_pred cCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCC-----ccccCCCc
Confidence 456666666666 35555444 455666666666666665554 45556666666666654 3332 12344555
Q ss_pred ccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.++++ ..+++|+.|+|++|.+..
T Consensus 133 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred cCEEECCCCccCCchhhcccCCCCEEECcCCcCCC
Confidence 55555555554443 444455555555555443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=106.54 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=84.2
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+.++++|++|++++|++..+|.. +..+++|++|++++|. +..++ |..+..+
T Consensus 54 ~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~---~~~~~~l 127 (477)
T 2id5_A 54 SFPHLEELELNE--NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILL---DYMFQDL 127 (477)
T ss_dssp TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEEC---TTTTTTC
T ss_pred CCCCCCEEECCC--CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCC---hhHcccc
Confidence 578888888888 566554 56677888888888888888877654 5778888888888886 54442 3445777
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
++|+.|++++|.+... ..+++|+.|++++|.++. +|.. +..+++|
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L 178 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS----IPTEALSHLHGL 178 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS----CCHHHHTTCTTC
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc----cChhHhcccCCC
Confidence 8888888888877654 567778888888887776 5543 4444444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=5.2e-13 Score=105.82 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=36.8
Q ss_pred cceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch--hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL--SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
+++|++|++++ +.+..++.. +..+++|++|++++|++..+|. .+..+++|++|++++|..+..++ +..+..+
T Consensus 99 l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l 173 (353)
T 2z80_A 99 LGSLEHLDLSY--NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---RKDFAGL 173 (353)
T ss_dssp CTTCCEEECCS--SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTC
T ss_pred CCCCCEEECCC--CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC---HHHccCC
Confidence 44444444444 334333322 3444444444444444444443 34444444444444442122221 1223444
Q ss_pred CcccEEEccCCccc
Q 047302 124 DSLEELDISGTAIR 137 (188)
Q Consensus 124 ~~L~~L~l~~~~i~ 137 (188)
++|+.|++++|.++
T Consensus 174 ~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 174 TFLEELEIDASDLQ 187 (353)
T ss_dssp CEEEEEEEEETTCC
T ss_pred CCCCEEECCCCCcC
Confidence 45555555554443
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=3.5e-13 Score=118.37 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=81.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCcc-Cc--ccchhhhcCC-------CCcEEEccCCCCCccCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTA-IR--ELPLSVEYLT-------GLFVLNFKDWQNLECLPSP 115 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l~-------~L~~L~l~~~~~l~~l~~~ 115 (188)
.+++|+.|++++| .....+|..+.++++|+.|++++|+ +. .+|..++.+. +|+.|++++|. +..+
T Consensus 489 ~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i--- 563 (876)
T 4ecn_A 489 NLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF--- 563 (876)
T ss_dssp GCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC---
T ss_pred cCCCCCEEECcCC-CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc---
Confidence 5777888888875 5567777777778888888888886 65 3676666555 78888887776 5544
Q ss_pred ccc--ccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302 116 ISE--NLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL 171 (188)
Q Consensus 116 ~~~--~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~ 171 (188)
|. .++.+++|+.|++++|.++.+ +.+++|+.|++++|.+.. +|..+..++.
T Consensus 564 -p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~----lp~~l~~l~~ 619 (876)
T 4ecn_A 564 -PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE----IPEDFCAFTD 619 (876)
T ss_dssp -CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSC----CCTTSCEECT
T ss_pred -CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcccc----chHHHhhccc
Confidence 44 457777777777777776654 566677777777777765 6666555554
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=3e-12 Score=99.18 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=95.4
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|+.+++++ +.+..++. +..+++|++|++++|++..+++ +..+++|++|++++|. +..+ ..+..+++
T Consensus 44 ~l~~L~~L~l~~--~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~ 113 (291)
T 1h6t_A 44 ELNSIDQIIANN--SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDL-----SSLKDLKK 113 (291)
T ss_dssp HHHTCCEEECTT--SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCG-----GGGTTCTT
T ss_pred hcCcccEEEccC--CCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCC-----hhhccCCC
Confidence 578899999999 57777765 5889999999999999998886 9999999999999997 6654 34689999
Q ss_pred ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|+.|++++|.++++ ..+++|+.|++++|.++. + ..+..+++|
T Consensus 114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L 158 (291)
T 1h6t_A 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKL 158 (291)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC----C-GGGGGCTTC
T ss_pred CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCc----c-hhhccCCCC
Confidence 99999999998876 788999999999999987 4 455555555
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.35 E-value=2.9e-12 Score=98.11 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=56.2
Q ss_pred eecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302 49 SVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L 126 (188)
++++|++++ +.+..++. .+.++++|++|++++|++..+++ .+..+++|++|++++|. +..++ +..+..+++|
T Consensus 29 ~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---TTTTTTCTTC
T ss_pred CccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccC---hhhhcCCccc
Confidence 455555555 34444432 34455555555555555554432 34555555555555554 33332 2233455555
Q ss_pred cEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 127 EELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
+.|++++|.+... ..+++|++|++++|.++. ..+|..+..+++|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L 151 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL 151 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCC
Confidence 5555555554443 344555555555555543 2344444444444
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=4.9e-12 Score=106.96 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=47.3
Q ss_pred CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch-hhhc
Q 047302 17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL-SVEY 94 (188)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~ 94 (188)
.+...|..++++++.-..+.... ...+++|++|++++ +.+..+|.. +..+++|++|++++|.+..+++ .+..
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~--n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeC--CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 34445555566554433332211 12466677777776 455555543 3666667777777776665433 4566
Q ss_pred CCCCcEEEccCCC
Q 047302 95 LTGLFVLNFKDWQ 107 (188)
Q Consensus 95 l~~L~~L~l~~~~ 107 (188)
+++|++|++++|.
T Consensus 170 l~~L~~L~L~~N~ 182 (597)
T 3oja_B 170 TTSLQNLQLSSNR 182 (597)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCcCcEEECcCCC
Confidence 6666666666654
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=3.5e-12 Score=100.22 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=25.4
Q ss_pred cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 107 (188)
+++|++|++++ +.+..+|..+. ++|++|++++|++..+|+ .+..+++|+.|++++|.
T Consensus 101 l~~L~~L~L~~--n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 101 LRKLQKLYISK--NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CTTCCEEECCS--SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cCCCCEEECCC--CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 44444444444 33333333211 344444444444444432 24555555555555554
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=5.2e-13 Score=100.26 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=59.9
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchhhhcCCCCc---EEEccCCCCCccCCCccccccC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF---VLNFKDWQNLECLPSPISENLG 121 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~l~~l~~~~~~~l~ 121 (188)
.+++|++|++++| +.++.++ ..+..+++|++|++++|++..+|. +..+++|+ ++++++|..+..++ +..+.
T Consensus 78 ~l~~L~~L~l~~~-n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~---~~~~~ 152 (239)
T 2xwt_C 78 NLSKVTHIEIRNT-RNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP---VNAFQ 152 (239)
T ss_dssp SCTTCCEEEEEEE-TTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC---TTTTT
T ss_pred CCcCCcEEECCCC-CCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC---ccccc
Confidence 4556666666654 4555544 234555666666666666655553 55555555 66666652244443 12245
Q ss_pred CCCccc-EEEccCCccccc----CCCCCCCEeccCCCC-CCC
Q 047302 122 KVDSLE-ELDISGTAIRQL----SRLCSLTKWDLSDCN-LPV 157 (188)
Q Consensus 122 ~l~~L~-~L~l~~~~i~~~----~~l~~L~~L~l~~~~-l~~ 157 (188)
.+++|+ .+++++|.++.+ ...++|+.|++++|. ++.
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE
T ss_pred chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc
Confidence 666777 777777766654 122567777777773 664
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1.6e-12 Score=109.94 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=33.7
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 107 (188)
.+++|++|++++ +.+..++ ..+..+++|++|++++|.+..+|+. ++.+++|++|++++|.
T Consensus 97 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 97 YAHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCC--CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 455666666665 3444443 3345566666666666666655544 3556666666666654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.34 E-value=6e-13 Score=103.91 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=28.8
Q ss_pred ccceecEEEEcccccccccccccccCC-----CCccEEeecCccCcccc-hhhhcCCCCcEEEccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSM-----KSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~ 107 (188)
.+++|++|++++ +.+..+|..+..+ ++|++|++++|++..++ ..++.+++|++|++++|.
T Consensus 119 ~l~~L~~L~Ls~--N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 119 TGPDLNILNLRN--VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CSCCCSEEEEES--CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cCCCccEEEccC--CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 345555555555 3443334333333 45555555555554433 344455555555555543
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.34 E-value=1.6e-13 Score=116.90 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=73.8
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCcc-Cc--ccchhhhcC------CCCcEEEccCCCCCccCCCcc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTA-IR--ELPLSVEYL------TGLFVLNFKDWQNLECLPSPI 116 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~l~~l~~~~ 116 (188)
.+++|++|++++| .....+|..+.++++|++|++++|+ +. .+|..++.+ ++|++|++++|. +..+
T Consensus 247 ~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i---- 320 (636)
T 4eco_A 247 NLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF---- 320 (636)
T ss_dssp GCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC----
T ss_pred ccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc----
Confidence 4677778888775 4456677777777778888887776 65 367666665 777777777776 5544
Q ss_pred cc--ccCCCCcccEEEccCCccc-cc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302 117 SE--NLGKVDSLEELDISGTAIR-QL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL 171 (188)
Q Consensus 117 ~~--~l~~l~~L~~L~l~~~~i~-~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~ 171 (188)
|. .++.+++|+.|++++|.++ .+ ..+++|+.|++++|.++. +|..+..++.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~ 377 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE----IPANFCGFTE 377 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEE----CCTTSEEECT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccc----ccHhhhhhcc
Confidence 34 4567777777777777666 22 344455555555555444 4444444333
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=4.2e-12 Score=96.96 Aligned_cols=111 Identities=22% Similarity=0.184 Sum_probs=87.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|++|++++ +.+..++ .+..+++|++|++++|++..+++ +..+++|++|++++|. +..++. +.. ++
T Consensus 39 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-----~~~-~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-----IPS-AC 107 (263)
T ss_dssp HHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-----CCC-SS
T ss_pred hcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-----ccc-Cc
Confidence 477888999988 5777777 45788899999999999888876 8888999999999887 666532 123 88
Q ss_pred ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|+.|++++|.+++. ..+++|+.|++++|.++. ++ .+..+++|
T Consensus 108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~----~~-~l~~l~~L 152 (263)
T 1xeu_A 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS----IV-MLGFLSKL 152 (263)
T ss_dssp CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB----CG-GGGGCTTC
T ss_pred ccEEEccCCccCCChhhcCcccccEEECCCCcCCC----Ch-HHccCCCC
Confidence 89999999988776 778889999999998887 54 55555555
No 70
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=3.8e-12 Score=101.34 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|+.|++++ +.+..++ ..+..+++|++|++++|++..+++ .+..+++|+.|++++|. +..++ |..+..+
T Consensus 62 ~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~---~~~~~~l 135 (361)
T 2xot_A 62 RLTNLHSLLLSH--NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVD---RNAFEDM 135 (361)
T ss_dssp CCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred cccccCEEECCC--CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEEC---HHHhCCc
Confidence 577888888887 5676665 456777888888888888876654 46778888888888876 55543 3445778
Q ss_pred CcccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~ 157 (188)
++|+.|++++|.++.+ ..+++|+.|++++|.++.
T Consensus 136 ~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8888888888887765 246788888888888876
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=4.7e-12 Score=103.22 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=58.8
Q ss_pred cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
+++|+.|++++| +.+..++. .+.++++|++|++++|++..+| .+..+++|+.|++++|. +..++ |..+..+++
T Consensus 159 l~~L~~L~l~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~ 232 (440)
T 3zyj_A 159 IPSLRRLDLGEL-KRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIR---PGSFQGLMH 232 (440)
T ss_dssp CTTCCEEECCCC-TTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSC-CCEEC---TTTTTTCTT
T ss_pred CcccCEeCCCCC-CCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCc-cCccC---hhhhccCcc
Confidence 444444444444 44444332 3455555666666666655555 35555666666666664 44332 334466666
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.++.. ..+++|+.|++++|+++.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 66666666666554 456667777777776665
No 72
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=3.9e-12 Score=92.67 Aligned_cols=112 Identities=19% Similarity=0.231 Sum_probs=91.3
Q ss_pred ecEEEEcccccccccccccccCCCCccEEeecCccCcccchh--hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS--VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
-+.+++++ +.++.+|..+. .++++|++++|++..+++. +..+++|++|++++|. +..++ |..+..+++|+
T Consensus 10 ~~~l~~s~--~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTG--RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE---PNAFEGASHIQ 81 (192)
T ss_dssp TTEEECTT--SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC---TTTTTTCTTCC
T ss_pred CCEEEcCC--CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcC---HhHcCCcccCC
Confidence 36889998 78888987543 3899999999999988764 8999999999999997 66553 45678999999
Q ss_pred EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
.|++++|.++.. ..+++|++|++++|+++. ..|..+..+++|
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L 128 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC---VMPGSFEHLNSL 128 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE---ECTTSSTTCTTC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe---eCHHHhhcCCCC
Confidence 999999999886 678999999999999985 235555555544
No 73
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.3e-11 Score=88.47 Aligned_cols=115 Identities=25% Similarity=0.343 Sum_probs=93.6
Q ss_pred cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.++|+.|++++ +.+..++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++ +..+..++
T Consensus 27 ~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~---~~~~~~l~ 100 (177)
T 2o6r_A 27 PSSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLP---NGVFDKLT 100 (177)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred CCCCcEEEeCC--CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccC---HHHhhCCc
Confidence 46899999999 67777764 458899999999999999988765 6889999999999997 77664 23467899
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL 171 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~ 171 (188)
+|+.|++++|.++.+ ..+++|+.|++++|.+.. .+..+..+..
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~l~~ 148 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC----SCPRIDYLSR 148 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----CHHHHHHHHH
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec----cCccHHHHHH
Confidence 999999999998876 568899999999999885 4444444443
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=5.5e-12 Score=106.20 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=87.9
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
.|+.|++++ +.+..+|. +..+++|+.|++++|.+..+|..++.+++|+.|++++|. +..+ | .++.+++|+.
T Consensus 442 ~L~~L~Ls~--n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----p-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAH--KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV----D-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTT--SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----G-GGTTCSSCCE
T ss_pred CceEEEecC--CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----c-ccCCCCCCcE
Confidence 578899998 68888887 788999999999999999899889999999999999987 6655 4 5688899999
Q ss_pred EEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhH
Q 047302 129 LDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDIC 167 (188)
Q Consensus 129 L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~ 167 (188)
|++++|.+++. ..+++|+.|++++|.++. +|+...
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~----~~~~~~ 553 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ----EEGIQE 553 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG----SSSCTT
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC----CccHHH
Confidence 99999987654 578889999999998887 555433
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=6.4e-12 Score=104.99 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=63.8
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..++ ..+.++++|++|++++|.+..+| ..+..+++|++|++++|. +..++. ..++.+
T Consensus 50 ~l~~L~~L~Ls~--n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~---~~~~~l 123 (570)
T 2z63_A 50 SFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLEN---FPIGHL 123 (570)
T ss_dssp TCSSCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTT---CSCTTC
T ss_pred CCCCceEEECCC--CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCC---cccccc
Confidence 466666666666 3454443 34566666666666666666554 346666666666666665 444431 124666
Q ss_pred CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.++.. ..+++|++|++++|.++.
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 6667777766665541 456667777777666664
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.31 E-value=8.5e-12 Score=97.87 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=27.5
Q ss_pred CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCc
Q 047302 17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR 86 (188)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~ 86 (188)
.++..+..+++.++.-..+.. ..+ ..+++|++|++++ +.++.+|..+. ++|++|++++|.+.
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~---~~~-~~l~~L~~L~Ls~--n~l~~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISP---GAF-APLVKLERLYLSK--NQLKELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCT---TTT-TTCTTCCEEECCS--SCCSBCCSSCC--TTCCEEECCSSCCC
T ss_pred ccCCCCCEEECCCCcCCeeCH---HHh-cCCCCCCEEECCC--CcCCccChhhc--ccccEEECCCCccc
Confidence 344455555555543332211 111 1456666666666 44544443221 34444444444443
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.30 E-value=8.4e-12 Score=104.64 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=101.5
Q ss_pred ccceecEEEEccccccccc-ccccccCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCcc-CCCcccccc
Q 047302 46 YGTSVGTSIVGNCYKRIAN-LERFWGSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLEC-LPSPISENL 120 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l 120 (188)
.+++|++|++++ +.+.. .|..+..+++|++|++++|++..++ ..+..+++|+.|++++|. +.. ++. ..+
T Consensus 351 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQ--NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD---RTC 424 (562)
T ss_dssp SCCCCCEEECCS--SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS---CCC
T ss_pred CCCCceEEECCC--CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh---hhh
Confidence 578999999998 45544 6777788999999999999988654 457889999999999997 554 532 235
Q ss_pred CCCCcccEEEccCCccccc--CCC-CCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC-chhhhccc
Q 047302 121 GKVDSLEELDISGTAIRQL--SRL-CSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES-NSQIRRNV 187 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~--~~l-~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~-~~~l~~L~ 187 (188)
..+++|+.|++++|.+++. ..+ ++|+.|++++|.++. +|..+..+++| +..+|.. +..+++|+
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~----ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS----IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC----CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc----cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence 6788899999999988654 455 589999999998887 88877666665 6677776 66666654
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=8.6e-12 Score=101.98 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=43.8
Q ss_pred cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCC
Q 047302 70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCS 144 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~ 144 (188)
..+++|++|++++|++..+| .+..+++|+.|++++|. +..++ |..+..+++|+.|++++|.++.. ..+++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIR---PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEEC---GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-CcccC---cccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 44455555555555554444 34445555555555554 33322 33445556666666666655544 45556
Q ss_pred CCEeccCCCCCCC
Q 047302 145 LTKWDLSDCNLPV 157 (188)
Q Consensus 145 L~~L~l~~~~l~~ 157 (188)
|+.|++++|+++.
T Consensus 268 L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 268 LVELNLAHNNLSS 280 (452)
T ss_dssp CCEEECCSSCCSC
T ss_pred CCEEECCCCcCCc
Confidence 6666666666554
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1e-11 Score=98.93 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=95.1
Q ss_pred cceecEEEEcccccccccccc-ccc-CCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWG-SMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
...++.|++++ +.+..++. .+. .+.+|++|++++|++..+++ .+..+++|++|++++|. +..++ +..+..+
T Consensus 38 ~~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l 111 (361)
T 2xot_A 38 PSYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLD---EFLFSDL 111 (361)
T ss_dssp CTTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred CCCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCC---HHHhCCC
Confidence 34689999999 78877765 344 89999999999999998864 58999999999999997 77664 3346889
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh----HHHhhh
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI----CYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l----~~l~~L 172 (188)
++|+.|++++|.++.. ..+++|+.|++++|.++. +|..+ ..+++|
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR----FPVELIKDGNKLPKL 165 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS----CCGGGTC----CTTC
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe----eCHHHhcCcccCCcC
Confidence 9999999999998876 688999999999999998 77764 345554
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=8.6e-12 Score=97.82 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=22.9
Q ss_pred cCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302 120 LGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL 171 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~ 171 (188)
+..+++|+.|++++|.+++. ..+++|+.|++++|.++. +|..+..++.
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~ 264 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKY 264 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----CCTTTTTCSS
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----CChhhccCCC
Confidence 44455555555555544433 344455555555555544 4444443333
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.29 E-value=9.7e-12 Score=97.98 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=43.7
Q ss_pred cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCC
Q 047302 70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLT 146 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~ 146 (188)
..+++|++|++++|++..+++ +..+++|++|++++|. +..+ +.+..+++|+.|++++|.+++. ..+++|+
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDI-----NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCC-----hhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence 445555555555555555443 5555555555555554 3332 2245556666666666655554 4555666
Q ss_pred EeccCCCCCC
Q 047302 147 KWDLSDCNLP 156 (188)
Q Consensus 147 ~L~l~~~~l~ 156 (188)
.|++++|.+.
T Consensus 291 ~L~L~~n~l~ 300 (347)
T 4fmz_A 291 SLFLNNNQLG 300 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEECcCCcCC
Confidence 6666666655
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=1e-11 Score=97.59 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=45.7
Q ss_pred ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCcc---------
Q 047302 48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPI--------- 116 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~--------- 116 (188)
+++++|++++ +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +..+|..+
T Consensus 54 ~~l~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQN--NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI 130 (332)
T ss_dssp TTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred CCCeEEECCC--CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence 3555555555 3444432 3445555555555555555543 3345555555555555554 44333221
Q ss_pred ---------ccccCCCCcccEEEccCCccc
Q 047302 117 ---------SENLGKVDSLEELDISGTAIR 137 (188)
Q Consensus 117 ---------~~~l~~l~~L~~L~l~~~~i~ 137 (188)
+..+..+++|+.|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 223566777777777777664
No 83
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=5.4e-12 Score=87.97 Aligned_cols=122 Identities=19% Similarity=0.121 Sum_probs=94.3
Q ss_pred eeEEEecCCCCChh--hHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCC
Q 047302 20 RMIGICDMGGIGKV--ALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLT 96 (188)
Q Consensus 20 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~ 96 (188)
..+..+++.+++-. .++ ..+ ..+++|++|++++ +.+..+ ..+..+++|++|++++|.+.. +|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~----~~~-~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE----GLT-DEFEELEFLSTIN--VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC----SCC-TTCTTCCEEECTT--SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHH----HHH-hhcCCCcEEECcC--CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 45566666665433 222 111 3689999999999 577766 566889999999999999986 787778899
Q ss_pred CCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEeccCC
Q 047302 97 GLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSD 152 (188)
Q Consensus 97 ~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~ 152 (188)
+|++|++++|. +..++ .+..++.+++|+.|++++|.+++. ..+++|+.|++++
T Consensus 89 ~L~~L~ls~N~-i~~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLS--TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSC-CCSHH--HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCc-CCChH--HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999997 65542 125678899999999999998765 5688999998864
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2.6e-12 Score=112.91 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=105.5
Q ss_pred ccceecEEEEccccccccc------------------cccccc--CCCCccEEeecCccCc-ccchhhhcCCCCcEEEcc
Q 047302 46 YGTSVGTSIVGNCYKRIAN------------------LERFWG--SMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFK 104 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~------------------l~~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~ 104 (188)
.+++|+.|++++ +.+.. +|..+. ++++|++|++++|.+. .+|..++.+++|+.|+++
T Consensus 446 ~L~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 446 RLTKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred cCCCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 689999999999 56755 888777 9999999999999865 889899999999999999
Q ss_pred CCCCCc--cCCCccc---cccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh-
Q 047302 105 DWQNLE--CLPSPIS---ENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL- 172 (188)
Q Consensus 105 ~~~~l~--~l~~~~~---~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L- 172 (188)
+|..+. .+|..+. ..+..+++|+.|++++|.++.+ ..+++|+.|++++|.+.. +| .++.+++|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~----lp-~~~~L~~L~ 598 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----LE-AFGTNVKLT 598 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB----CC-CCCTTSEES
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc----ch-hhcCCCcce
Confidence 985233 2322210 1223455999999999988754 578899999999999987 77 66666666
Q ss_pred --------hhcCCCCchhhhc-cc
Q 047302 173 --------FKDEPESNSQIRR-NV 187 (188)
Q Consensus 173 --------~~~lp~~~~~l~~-L~ 187 (188)
+..+|+++..+.+ |+
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCC
T ss_pred EEECcCCccccchHHHhhccccCC
Confidence 5678888877776 64
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=1.3e-11 Score=96.24 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=82.4
Q ss_pred ccceecEEEEcccccccc-cccccc--cCCCCccEEeecCccCcccchhhhcC-----CCCcEEEccCCCCCccCCCccc
Q 047302 46 YGTSVGTSIVGNCYKRIA-NLERFW--GSMKSLTMLILDGTAIRELPLSVEYL-----TGLFVLNFKDWQNLECLPSPIS 117 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~-~l~~~~--~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~l~~~~~ 117 (188)
.+++|++|++++ +.+. .+|..+ ..+++|++|++++|++..+|..+..+ ++|++|++++|. +..++ |
T Consensus 93 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~---~ 166 (312)
T 1wwl_A 93 GISGLQELTLEN--LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS---C 166 (312)
T ss_dssp TTSCCCEEEEEE--EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC---T
T ss_pred CcCCccEEEccC--CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch---H
Confidence 478999999999 4664 677655 88999999999999999778777777 999999999997 66654 3
Q ss_pred cccCCCCcccEEEccCCcccc-------c--CCCCCCCEeccCCCCCCC
Q 047302 118 ENLGKVDSLEELDISGTAIRQ-------L--SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 118 ~~l~~l~~L~~L~l~~~~i~~-------~--~~l~~L~~L~l~~~~l~~ 157 (188)
..++.+++|++|++++|.+.+ . ..+++|+.|++++|.++.
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 456777888888888887432 1 566677777777776663
No 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=9.7e-12 Score=89.19 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=95.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.+|+.|++++ +.+..++......++|++|++++|.+..+ ..+..+++|++|++++|. +..++. ..+..+++
T Consensus 17 ~~~~L~~L~l~~--n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE---GLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECS---CHHHHCTT
T ss_pred CcCCceEEEeeC--CCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCc---chhhcCCC
Confidence 688999999999 67877876434344999999999999987 478899999999999997 766642 22478899
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChh----hHHHhhh
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRD----ICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~----l~~l~~L 172 (188)
|+.|++++|.++++ ..+++|+.|++++|.+.. +|.. +..++.|
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~----~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN----KKHYRLYVIYKVPQV 142 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG----STTHHHHHHHHCTTC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC----cHhHHHHHHHHCCcc
Confidence 99999999988765 578899999999999987 7775 6666665
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.27 E-value=5.2e-12 Score=100.03 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=46.7
Q ss_pred cceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
+++|++|++++ +.+..++ ..+.++++|++|++++|++..+|.. +..+++|++|++++|. +..++. ...+..++
T Consensus 75 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~--~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTS--NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGE--TSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCS--SCSCTTCT
T ss_pred CCCCCEEECCC--CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCc--hhhhccCC
Confidence 44455555554 3333332 2344445555555555555444433 4445555555555543 333321 01234445
Q ss_pred cccEEEccCCc-cccc-----CCCCCCCEeccCCCCCC
Q 047302 125 SLEELDISGTA-IRQL-----SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 125 ~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~l~ 156 (188)
+|+.|++++|. +... ..+++|+.|++++|.+.
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 55555555442 2222 34444555555555444
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=2.7e-11 Score=95.44 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=55.7
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCC-----------
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPS----------- 114 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~----------- 114 (188)
.+++|++|++++ +.+..++. +..+++|++|++++|.+..+| .+..+++|++|++++|. +..++.
T Consensus 64 ~~~~L~~L~l~~--n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 64 YLTNLEYLNLNG--NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLN 138 (347)
T ss_dssp GCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEE
T ss_pred hcCCccEEEccC--Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEE
Confidence 355666666666 34544444 455566666666666555554 45555556666655554 333211
Q ss_pred -------ccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 115 -------PISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 115 -------~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
..+..+..+++|+.|++++|.+.+. ..+++|+.|++++|.+..
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc
Confidence 0012234455555555555554443 455556666666665554
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=9.8e-12 Score=103.58 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=90.5
Q ss_pred ccceecEEEEcccccccc-ccc---ccccCCCCccEEeecCccCcccch---hhhcCCCCcEEEccCCCCCccCCCcccc
Q 047302 46 YGTSVGTSIVGNCYKRIA-NLE---RFWGSMKSLTMLILDGTAIRELPL---SVEYLTGLFVLNFKDWQNLECLPSPISE 118 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~-~l~---~~~~~l~~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 118 (188)
.+++|++|++++| .+. .+| ..+..+++|++|++++|++..++. .+..+++|++|++++|. +..+ |.
T Consensus 332 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l----p~ 404 (549)
T 2z81_A 332 HLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPM----PD 404 (549)
T ss_dssp HCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCC----CS
T ss_pred cCccccEEEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccC----Ch
Confidence 4789999999994 553 333 235788999999999999987763 47889999999999997 7766 45
Q ss_pred ccCCCCcccEEEccCCccccc-CC-CCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 119 NLGKVDSLEELDISGTAIRQL-SR-LCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 119 ~l~~l~~L~~L~l~~~~i~~~-~~-l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
.++.+++|++|++++|.++.+ .. .++|++|++++|+++. ++..+..|..|
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~----~~~~l~~L~~L 456 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS----FSLFLPRLQEL 456 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC----CCCCCTTCCEE
T ss_pred hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh----hcccCChhcEE
Confidence 568889999999999999877 22 3589999999999886 44444444444
No 90
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.26 E-value=2.7e-11 Score=98.73 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=63.0
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++ |..+..+
T Consensus 297 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l 370 (455)
T 3v47_A 297 HFTDLEQLTLAQ--NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG---DQSFLGL 370 (455)
T ss_dssp TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred cCCCCCEEECCC--CcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccC---hhhcccc
Confidence 456666666666 344433 34555666666666666666644 3445666666666666665 43332 3344666
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.++++ ..+++|+.|++++|+++.
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 6666666666666554 455666667777666663
No 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.26 E-value=7.7e-12 Score=102.70 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=90.4
Q ss_pred CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhc
Q 047302 17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEY 94 (188)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~ 94 (188)
.++..+..+++.+..-..+.. .. ...+++|++|++++ +.+..+|. .+.++++|++|++++|.+..+ |..+..
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~---~~-~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEP---GA-FNNLFNLRTLGLRS--NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECT---TT-TTTCTTCCEEECCS--SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cCCCCCCEEECCCCccCEeCh---hh-hhCCccCCEEECCC--CcCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence 334445555555543322211 11 12688999999998 57777764 457888999999999988755 556788
Q ss_pred CCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 95 LTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 95 l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+++|++|++++|. +..++ +..+..+++|+.|++++|.+++. ..+++|+.|++++|.+..
T Consensus 127 l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 127 LYNLKSLEVGDND-LVYIS---HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTCCEEEECCTT-CCEEC---TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred cccCCEEECCCCc-cceeC---hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 8899999998886 55443 34457778888888888877665 567777777777776664
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=3e-11 Score=103.22 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=80.3
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+.++++|++|++++|.+..+|+ .+..+++|++|++++|. +..++ |..++.+
T Consensus 47 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l 120 (680)
T 1ziw_A 47 RYSQLTSLDVGF--NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIK---NNPFVKQ 120 (680)
T ss_dssp GGTTCSEEECCS--SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---SCTTTTC
T ss_pred CCCcCcEEECCC--CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccC---hhHcccc
Confidence 577888888888 455444 5566778888888888888887776 47888888888888886 55553 3446788
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.++.. ..+++|++|++++|.++.
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 8888888888877654 567788888888888775
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=1.3e-11 Score=104.06 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=69.5
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ |..+.++++|++|++++|++..+ |..++.+++|++|++++|. +..++ |..++.+
T Consensus 55 ~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~---~~~~~~l 128 (606)
T 3t6q_A 55 RLINLTFLDLTR--CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSID---FIPLHNQ 128 (606)
T ss_dssp TCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGG---GSCCTTC
T ss_pred cCccceEEECCC--CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCC---cchhccC
Confidence 567777777777 344443 45567777777777777777644 5566777777777777775 44432 2335677
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
++|++|++++|.+++. ..+++|++|++++|.++.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 7777777777776653 346677777777777764
No 94
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=3.3e-11 Score=101.57 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=76.9
Q ss_pred eEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCc
Q 047302 21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLF 99 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~ 99 (188)
.+..+++.+..-..+.... ...+++|++|++++ +.+..+|..+..+++|++|++++|.+..+ |..+..+++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~--n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNT----FHCFSGLQELDLTA--THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTCCCSSCCTTT----TTTCTTCSEEECTT--SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred ceeEEEeecCccCccCHHH----hccccCCCEEeccC--CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 4555555554433332211 12578888999988 57778888778888889999988888765 44677888888
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-------CCCCCCCEeccCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~ 156 (188)
+|++++|.....++. ..+..+++|+.|++++|.+.+. ..+++|++|++++|.+.
T Consensus 329 ~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 329 HLSIKGNTKRLELGT---GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp EEECCSCSSCCBCCS---STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred EEECCCCCcccccch---hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 888888752213321 1234555555555555544332 34444444444444433
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.24 E-value=4.9e-12 Score=94.91 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred ccceecEEEEcccccccccccc-cccCCCCccEEeecC-ccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDG-TAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.+++|+++++++| ..++.++. .+.++++|++|++++ |++..+|+ .+..+++|++|++++|. +..+| . +..
T Consensus 53 ~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp----~-~~~ 125 (239)
T 2xwt_C 53 NLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFP----D-LTK 125 (239)
T ss_dssp TCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCC----C-CTT
T ss_pred CCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccc----c-ccc
Confidence 6889999999994 33777764 668899999999998 89988764 57889999999999987 66664 3 567
Q ss_pred CCccc---EEEccCC-ccccc-----CCCCCCC-EeccCCCCCCCCCCCCChh
Q 047302 123 VDSLE---ELDISGT-AIRQL-----SRLCSLT-KWDLSDCNLPVEGGEIPRD 165 (188)
Q Consensus 123 l~~L~---~L~l~~~-~i~~~-----~~l~~L~-~L~l~~~~l~~~~~~lp~~ 165 (188)
+++|+ .|++++| .++.+ ..+++|+ .|++++|.++. +|..
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----i~~~ 174 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----VQGY 174 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE----ECTT
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc----cCHh
Confidence 77777 9999999 88765 6788899 99999999886 6654
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.3e-11 Score=104.57 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=95.1
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+.+|+.|++++ +.+..++. +..+++|+.|++++|++..+++ +..+++|+.|++++|. +..+ ..+..+++
T Consensus 41 ~L~~L~~L~l~~--n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANN--SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDL-----SSLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTT--CCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCC-----TTSTTCTT
T ss_pred cCCCCCEEECcC--CCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCC-----hhhccCCC
Confidence 578899999999 57877774 5889999999999999998886 8999999999999997 6654 24688999
Q ss_pred ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|+.|++++|.++++ ..+++|+.|++++|.+.. + ..+..++.|
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L 155 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKL 155 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC----C-GGGGSCTTC
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCccCC----c-hhhcccCCC
Confidence 99999999998876 788999999999999987 4 455555555
No 97
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=3e-11 Score=98.39 Aligned_cols=115 Identities=28% Similarity=0.312 Sum_probs=93.0
Q ss_pred ceecEEEEccccccc-ccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRI-ANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i-~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
++|+.+++++| .+ ...|..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++ |..++.+++
T Consensus 275 ~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKS--KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSID---SRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---GGGGTTCTT
T ss_pred cCceEEEecCc--cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcC---hhHhcCccc
Confidence 57889999984 55 44566778899999999999999866 5578899999999999997 65553 456788999
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
|+.|++++|.+++. ..+++|++|++++|+++. +|.. +..+++|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L 397 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS----VPDGIFDRLTSL 397 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCcccc----CCHhHhccCCcc
Confidence 99999999998776 678899999999999987 6654 3555555
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=100.89 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=90.4
Q ss_pred ceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
++++.|++++ +.++.++ ..+.++++|++|++++|++..++ ..+..+++|++|++++|. +..++ |..++.+++
T Consensus 28 ~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCS--CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---TTTTTTCTT
T ss_pred ccccEEEccC--CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccC---HhhhcCccc
Confidence 4688889988 5676654 46688888999999998888764 457888899999998886 65554 345688888
Q ss_pred ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|++|++++|.++.+ +.+++|++|++++|.+.. ..+|..++++++|
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L 151 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL 151 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred cccccccccccccCCCccccccccccEEecCCCccce--ecChhhhcccCCC
Confidence 99999988887765 677888999999888875 3467777777766
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=1.4e-11 Score=96.33 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=71.8
Q ss_pred ccceecEEEEcccccccccc-cccc-cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFW-GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++|++|++++ +.+..+ +..+ ..+++|++|++++|.+..+|. ...+++|+.|++++|. +..+ |..+..+
T Consensus 142 ~l~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l----~~~~~~l 213 (317)
T 3o53_A 142 CRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFM----GPEFQSA 213 (317)
T ss_dssp GGSSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEE----CGGGGGG
T ss_pred ccCCCCEEECCC--CCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCc-CCcc----hhhhccc
Confidence 456677777776 455443 2222 356677777777777766642 3346777777777775 5544 3335667
Q ss_pred CcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
++|+.|++++|.++.+ ..+++|+.|++++|.+.. +.+|..+..++.+
T Consensus 214 ~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~--~~~~~~~~~~~~L 264 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRV 264 (317)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH--HHHHHHHHTCHHH
T ss_pred CcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC--cCHHHHHhccccc
Confidence 7777777777777665 566677777777777763 2245554444433
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=106.69 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=83.9
Q ss_pred ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCcc-CCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLEC-LPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l~~ 122 (188)
.+++|++|++++| ..+..+ |..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +.. .+.. ..++.
T Consensus 46 ~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~~~ 121 (844)
T 3j0a_A 46 FLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKD--GYFRN 121 (844)
T ss_dssp SCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTT--CCCSS
T ss_pred ccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccC--ccccc
Confidence 6788888888885 556666 56678888888888888888755 6678888888888888886 443 2111 12577
Q ss_pred CCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHH
Q 047302 123 VDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYL 169 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l 169 (188)
+++|++|++++|.+++. +.+++|++|++++|.++. ..|..+..+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~---~~~~~l~~l 171 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL---VCEHELEPL 171 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC---CCSGGGHHH
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe---eCHHHcccc
Confidence 88888888888877554 677888888888887763 345555554
No 101
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=5.6e-11 Score=101.53 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 121 GKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
..+++|+.|++++|.++.+ ..+++|+.|++++|+++.
T Consensus 533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 4444445555555444433 344445555555555444
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=95.41 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=88.7
Q ss_pred eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccc---cc--ccccCCCCccEEeecCccCcccchh--
Q 047302 19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIAN---LE--RFWGSMKSLTMLILDGTAIRELPLS-- 91 (188)
Q Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~---l~--~~~~~l~~L~~L~l~~~~i~~lp~~-- 91 (188)
...+..++++++.-..+... . ...+++|++|++++| .+.. ++ ..+..+++|++|++++|++..++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~---~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCE---Q-VRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTT---S-CCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHH---H-hccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 34455555555443333211 1 126889999999994 4422 32 2336788999999999999766653
Q ss_pred --hhcCCCCcEEEccCCCCCccCCCccccccCCC---CcccEEEccCCccccc--CCCCCCCEeccCCCCCCC
Q 047302 92 --VEYLTGLFVLNFKDWQNLECLPSPISENLGKV---DSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 92 --~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l---~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~~ 157 (188)
++.+++|++|++++|. +.... |..+..+ ++|+.|++++|.++.+ .-.++|+.|++++|+++.
T Consensus 218 ~l~~~l~~L~~L~Ls~N~-l~~~~---p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS-LRATV---NPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHTCCCSSEECTTSC-CCCCC---CSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred HHHhcCCCCCEEECCCCC-CCccc---hhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence 5778999999999997 55441 3333444 6899999999998876 334689999999999886
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.3e-11 Score=106.64 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=84.0
Q ss_pred cccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302 60 KRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL 139 (188)
Q Consensus 60 ~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~ 139 (188)
+.+...+..+..+..|+.|++++|.+..+|..+..+++|++|++++|. +..+ |..++.+++|+.|++++|.++.+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l----p~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL----PAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC----CGGGGGGTTCCEEECTTSCCSSC
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc----ChhhhCCCCCCEEeCcCCcCCcc
Confidence 344455667788999999999999999999999999999999999997 7666 55669999999999999999876
Q ss_pred ----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 140 ----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 140 ----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
..+++|+.|+|++|.+.. +|..++.+++|
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~----lp~~~~~l~~L 318 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTT----LPWEFGNLCNL 318 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCC----CCSSTTSCTTC
T ss_pred ChhhcCCCCCCEEECCCCCCCc----cChhhhcCCCc
Confidence 788999999999999987 89888877777
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.20 E-value=6.7e-11 Score=98.02 Aligned_cols=101 Identities=22% Similarity=0.187 Sum_probs=86.3
Q ss_pred ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
++|++|++++ +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +..+ |.. .+++
T Consensus 21 ~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l----p~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQ--NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKI----SCH--PTVN 91 (520)
T ss_dssp TTCSEEECCS--SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEE----ECC--CCCC
T ss_pred ccccEEECCC--CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeec----Ccc--ccCC
Confidence 7899999999 5776665 5778999999999999999876 6689999999999999997 6665 444 7899
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
|++|++++|.++.. +.+++|++|++++|.+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 99999999988753 788999999999999874
No 105
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1e-10 Score=83.79 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=90.2
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~ 127 (188)
+.+.+++++ +.+..+|..+ .+++++|++++|++..+|+. +..+++|++|++++|. +..++ +..+..+++|+
T Consensus 8 ~~~~l~~~~--~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNS--KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLP---DGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCS--SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---TTTTTTCTTCC
T ss_pred CCCEEEecC--CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeC---hhHccCCCccC
Confidence 356788888 6888888533 46899999999999988754 6889999999999997 77664 23468899999
Q ss_pred EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302 128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL 172 (188)
Q Consensus 128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L 172 (188)
.|++++|.++.. ..+++|++|++++|.++. +|.. +..+++|
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L 126 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS----VPDGIFDRLTSL 126 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceE----eCHHHhcCCccc
Confidence 999999999876 578899999999999987 7765 3555555
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3.7e-11 Score=101.19 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=95.5
Q ss_pred EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEE
Q 047302 22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVL 101 (188)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 101 (188)
+..++++++.-..++. + ..+++|+.|++++ |.+..+|..+..+++|+.|++++|++..+| .++.+++|+.|
T Consensus 443 L~~L~Ls~n~l~~lp~-----~-~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-----L-EQLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQEL 513 (567)
T ss_dssp CSEEECTTSCCSSCCC-----G-GGGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred ceEEEecCCCCCCCcC-----c-cccccCcEeecCc--ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence 5567777665444432 2 2689999999999 688899999999999999999999999998 89999999999
Q ss_pred EccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEecc
Q 047302 102 NFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDL 150 (188)
Q Consensus 102 ~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l 150 (188)
++++|. +..++ .|..++.+++|+.|++++|.+++. ..+++|+.|++
T Consensus 514 ~Ls~N~-l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNNR-LQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSSC-CCSSS--TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCCC-CCCCC--CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999997 66551 045668999999999999999876 34788888864
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=7.2e-11 Score=96.84 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=18.5
Q ss_pred CCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 121 GKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
..+++|+.|++++|.+++. ..+++|+.|++++|++..
T Consensus 328 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc
Confidence 3444455555555544433 445555555555555553
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=5.3e-11 Score=104.39 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=97.1
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCcc-Cccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTA-IREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
.+++++|++++ +.++.+ +..+.++++|++|++++|. +..+ |..+.++++|++|++++|. +..+. |..++.+
T Consensus 23 p~~l~~LdLs~--N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~---p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSF--NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLH---PDAFQGL 96 (844)
T ss_dssp CTTCCEEEEES--CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEEC---TTSSCSC
T ss_pred CCCcCEEECCC--CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccC---HhHccCC
Confidence 57899999999 677665 5678999999999999994 4577 6679999999999999997 65543 5667999
Q ss_pred CcccEEEccCCccccc-------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 124 DSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
++|++|++++|.+++. ..+++|++|++++|.+.. ...+..++++++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~L~~L 150 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSL 150 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGTCSSC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhHhhCCCC
Confidence 9999999999998762 688999999999999986 3334567777766
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=3.4e-11 Score=99.61 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCCC
Q 047302 71 SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSLT 146 (188)
Q Consensus 71 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~ 146 (188)
.+++|+.|++++|.+..+|. ...+++|+.|++++|. +..+ |..+..+++|+.|++++|.++.+ ..+++|+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~----~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFM----GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEE----CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred hCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCC----CHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 34445555555554444432 2234455555555544 3333 22234455555555555555443 3444555
Q ss_pred EeccCCCCCC
Q 047302 147 KWDLSDCNLP 156 (188)
Q Consensus 147 ~L~l~~~~l~ 156 (188)
.|++++|.+.
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 5555555544
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.2e-11 Score=92.30 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=64.3
Q ss_pred cceecEEEEcccccccccccccc--cCCCCccEEeecCccCcc-cc----hhhhcCCCCcEEEccCCCCCccCCCccccc
Q 047302 47 GTSVGTSIVGNCYKRIANLERFW--GSMKSLTMLILDGTAIRE-LP----LSVEYLTGLFVLNFKDWQNLECLPSPISEN 119 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~~~--~~l~~L~~L~l~~~~i~~-lp----~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 119 (188)
+++|++|++++| ......|..+ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|. +...+ |..
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~---~~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFS---CEQ 164 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCC---TTS
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhh---HHH
Confidence 455777777774 3223455544 667777777777777653 22 223456777777777776 44443 334
Q ss_pred cCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302 120 LGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~ 157 (188)
++.+++|++|++++|.+... ..+++|++|++++|.++.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 56667777777777764321 456666666776666654
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=1.2e-10 Score=95.55 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=71.4
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|+.|++++ +.+..++. +..+++|+.|++++|.+..+++ +..+++|+.|++++|. +..++ . +..+++
T Consensus 241 ~l~~L~~L~l~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~----~-~~~l~~ 310 (466)
T 1o6v_A 241 SLTNLTDLDLAN--NQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDIS----P-ISNLKN 310 (466)
T ss_dssp GCTTCSEEECCS--SCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCG----G-GGGCTT
T ss_pred cCCCCCEEECCC--Cccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCch----h-hcCCCC
Confidence 467778888877 45555554 5677777888887777776664 6777777777777775 54432 1 466777
Q ss_pred ccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.+++. ..+++|+.|++++|.++.
T Consensus 311 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCEEECcCCcCCCchhhccCccCCEeECCCCccCC
Confidence 77777777777665 567777777777777765
No 112
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=1.6e-10 Score=96.89 Aligned_cols=101 Identities=22% Similarity=0.193 Sum_probs=68.4
Q ss_pred ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
+++++|++++ +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +.++| .. .+++
T Consensus 52 ~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp----~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQ--NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNIS----CC--PMAS 122 (562)
T ss_dssp TTCCEEECCS--SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEEC----SC--CCTT
T ss_pred CCcCEEECCC--CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccC----cc--cccc
Confidence 5677777777 4565554 4567777777777777777755 4456777777777777776 55553 32 5677
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
|++|++++|.++++ ..+++|++|++++|.+..
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 77777777776553 566777777777777664
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.16 E-value=1.1e-10 Score=95.72 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=85.4
Q ss_pred eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF 99 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 99 (188)
..+..+++++..-..++ .+ ..+++|++|++++ +.+..+| +..+++|++|++++|++..+| ++.+++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~-----~l-~~l~~L~~L~Ls~--n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-----GI-EKLTGLTKLICTS--NNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCCT-----TG-GGCTTCSEEECCS--SCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEccCCCcccCh-----hh-cccCCCCEEEccC--CcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 44566666654433331 11 2578888888888 5676665 577888888888888888775 77888888
Q ss_pred EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--CCCCCCCEeccCCCCCC
Q 047302 100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~ 156 (188)
+|++++|. +..++ ++.+++|++|++++|.++++ ..+++|+.|++++|...
T Consensus 110 ~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD------VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp EEECCSSC-CSCCC------CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred EEECCCCc-CCeec------CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence 88888886 55542 47788888888888888776 77888888888888544
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.15 E-value=8.7e-11 Score=99.86 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=32.5
Q ss_pred ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccC
Q 047302 48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECL 112 (188)
Q Consensus 48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l 112 (188)
++|+.|++++ +.++.+|. .+++|++|++++|++..+|. .+++|++|++++|. +..+
T Consensus 61 ~~L~~L~L~~--N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l 116 (622)
T 3g06_A 61 AHITTLVIPD--NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHL 116 (622)
T ss_dssp TTCSEEEECS--CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCC
T ss_pred CCCcEEEecC--CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCC
Confidence 4566666666 45555554 35566666666666666654 45566666666654 4443
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=1.2e-10 Score=95.51 Aligned_cols=99 Identities=23% Similarity=0.204 Sum_probs=55.4
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|++|++++ +.+..++ +..+++|++|++++|++..+| ++.+++|++|++++|. +..++ ++.+++
T Consensus 83 ~l~~L~~L~Ls~--N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~ 149 (457)
T 3bz5_A 83 QNTNLTYLACDS--NKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID------VSHNTQ 149 (457)
T ss_dssp TCTTCSEEECCS--SCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC------CTTCTT
T ss_pred cCCCCCEEECcC--CCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec------cccCCc
Confidence 455666666666 3454443 455666666666666665554 5556666666666654 44331 355566
Q ss_pred ccEEEccCCc-cccc--CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTA-IRQL--SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~-i~~~--~~l~~L~~L~l~~~~l~~ 157 (188)
|++|++++|. +... ..+++|+.|++++|+++.
T Consensus 150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 6666666662 3222 555566666666666554
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.13 E-value=1.3e-11 Score=96.74 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=77.2
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.+++|++|++++| ..-...+..+..+++|++|++++| .+. .++..+..+++|++|++++|..+... .++..+..
T Consensus 116 ~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~ 192 (336)
T 2ast_B 116 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAH 192 (336)
T ss_dssp TBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHH
T ss_pred hCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHh
Confidence 4677777777774 322345555666777888888777 565 35656777777888888777223321 12344566
Q ss_pred CC-cccEEEccCCc--ccc--c----CCCCCCCEeccCCCC-CCCCCCCCChhhHHHhhh
Q 047302 123 VD-SLEELDISGTA--IRQ--L----SRLCSLTKWDLSDCN-LPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 123 l~-~L~~L~l~~~~--i~~--~----~~l~~L~~L~l~~~~-l~~~~~~lp~~l~~l~~L 172 (188)
++ +|+.|++++|. +++ + ..+++|+.|++++|. ++. ..+..+..+++|
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L 249 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYL 249 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTC
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCC
Confidence 77 88888888883 432 1 567888888888887 442 245555555555
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=9.7e-13 Score=96.22 Aligned_cols=103 Identities=19% Similarity=0.135 Sum_probs=89.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|++|++++ +.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|. +..+ | .+..+++
T Consensus 46 ~l~~L~~L~ls~--n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l----~-~~~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALST--NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL----S-GIEKLVN 116 (198)
T ss_dssp HTTTCSEEECSE--EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCH----H-HHHHHHH
T ss_pred cCCCCCEEECCC--CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcC----C-ccccCCC
Confidence 588999999999 6787788 6788999999999999999999888888999999999997 6654 3 4678899
Q ss_pred ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302 126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~ 157 (188)
|+.|++++|.++++ ..+++|+.|++++|.+..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 99999999988764 788999999999998865
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=2.9e-10 Score=93.26 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=41.0
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
+|++|++++ +.+..+|. +..+++|++|++++|++..+|.. ..+|++|++++|. +..+ | .++.+++|+.
T Consensus 132 ~L~~L~L~~--n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l----~-~~~~l~~L~~ 199 (454)
T 1jl5_A 132 LLEYLGVSN--NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEEL----P-ELQNLPFLTA 199 (454)
T ss_dssp TCCEEECCS--SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSC----C-CCTTCTTCCE
T ss_pred CCCEEECcC--CCCCCCcc-cCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcC----c-cccCCCCCCE
Confidence 344444444 23333332 34444444444444444443321 1244444444443 3322 2 2355555566
Q ss_pred EEccCCccccc-CCCCCCCEeccCCCCCC
Q 047302 129 LDISGTAIRQL-SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 129 L~l~~~~i~~~-~~l~~L~~L~l~~~~l~ 156 (188)
|++++|.++++ ...++|+.|++++|.++
T Consensus 200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 200 IYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred EECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 66655555443 12224444444444444
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=2.7e-10 Score=95.95 Aligned_cols=73 Identities=33% Similarity=0.313 Sum_probs=33.0
Q ss_pred CccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcccccCCC-CCCCEeccCC
Q 047302 74 SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRL-CSLTKWDLSD 152 (188)
Q Consensus 74 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~l-~~L~~L~l~~ 152 (188)
+|++|++++|.+..+|. .+++|+.|++++|. +..+| . .+++|+.|++++|.++.+..+ ++|+.|++++
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp----~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~ 189 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLP----E---LPTSLEVLSVRNNQLTFLPELPESLEALDVST 189 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCC----C---cCCCcCEEECCCCCCCCcchhhCCCCEEECcC
Confidence 44444444444444443 34444444444443 33322 1 234455555555554443111 3455556665
Q ss_pred CCCCC
Q 047302 153 CNLPV 157 (188)
Q Consensus 153 ~~l~~ 157 (188)
|.++.
T Consensus 190 N~L~~ 194 (571)
T 3cvr_A 190 NLLES 194 (571)
T ss_dssp SCCSS
T ss_pred CCCCc
Confidence 55554
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=2.8e-10 Score=93.36 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCc----------
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP---------- 115 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~---------- 115 (188)
.+++|+++++++ +.+..+|.. ..+|++|++++|++..+| .++.+++|++|++++|. +..+|..
T Consensus 151 ~l~~L~~L~l~~--N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 151 NSSFLKIIDVDN--NSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAG 223 (454)
T ss_dssp TCTTCCEEECCS--SCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred CCCCCCEEECCC--CcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECc
Confidence 577888888888 566666643 347788888888777776 57777777777777775 4443211
Q ss_pred ------cccccCCCCcccEEEccCCccccc-CCCCCCCEeccCCCCCCC
Q 047302 116 ------ISENLGKVDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 116 ------~~~~l~~l~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~ 157 (188)
+| .++.+++|+.|++++|.++.+ ..+++|+.|++++|.++.
T Consensus 224 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 224 NNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC
T ss_pred CCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc
Confidence 12 134555555555555555544 333455666666655554
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.06 E-value=5.2e-10 Score=95.10 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=50.9
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~ 125 (188)
.+++|++|++++ +.+..+|. .+++|++|++++|.+..+|. .+.+|+.|++++|. +..+|. .+++
T Consensus 79 ~l~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~ 142 (622)
T 3g06_A 79 LPPELRTLEVSG--NQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPG 142 (622)
T ss_dssp CCTTCCEEEECS--CCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTT
T ss_pred cCCCCCEEEcCC--CcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCC-------CCCC
Confidence 467888889988 56777775 56788888888888877765 45667777776665 554432 1245
Q ss_pred ccEEEccCCcccc
Q 047302 126 LEELDISGTAIRQ 138 (188)
Q Consensus 126 L~~L~l~~~~i~~ 138 (188)
|++|++++|.++.
T Consensus 143 L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 143 LQELSVSDNQLAS 155 (622)
T ss_dssp CCEEECCSSCCSC
T ss_pred CCEEECcCCcCCC
Confidence 5555555555444
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.06 E-value=1.2e-10 Score=91.30 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=68.6
Q ss_pred ccceecEEEEcccccccc--cccccccCCCCccEEeecCc-cCcc--cchhhhcCC-CCcEEEccCCC-CCccCCCcccc
Q 047302 46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGT-AIRE--LPLSVEYLT-GLFVLNFKDWQ-NLECLPSPISE 118 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~~~-~l~~l~~~~~~ 118 (188)
.+++|++|++++| ..+. .++..+..+++|++|++++| .+.. ++..+..++ +|++|++++|. .+.. ..+|.
T Consensus 140 ~~~~L~~L~L~~~-~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--~~l~~ 216 (336)
T 2ast_B 140 KNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLST 216 (336)
T ss_dssp TCTTCSEEECTTC-BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHH
T ss_pred cCCCCCEEECCCC-CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--HHHHH
Confidence 4677777777775 4554 35555667777777777777 7753 566667777 77777777773 1210 12234
Q ss_pred ccCCCCcccEEEccCCc-cccc-----CCCCCCCEeccCCCC
Q 047302 119 NLGKVDSLEELDISGTA-IRQL-----SRLCSLTKWDLSDCN 154 (188)
Q Consensus 119 ~l~~l~~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~ 154 (188)
.+..+++|+.|++++|. +++. ..+++|++|++++|.
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 45567777777777776 4432 566777777777774
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.6e-12 Score=94.99 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=90.3
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
.++...+.++.+.++.+|..+..+++|++|++++|++..+| .+..+++|++|++++|. +..+ |..+..+++|+.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l----~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKI----ENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSC----SSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccc----cchhhcCCcCCE
Confidence 45555555421245666767889999999999999999998 89999999999999997 6666 444566789999
Q ss_pred EEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCCh--hhHHHhhh
Q 047302 129 LDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPR--DICYLCLL 172 (188)
Q Consensus 129 L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L 172 (188)
|++++|.++++ ..+++|+.|++++|.++. +|. .+..+++|
T Consensus 98 L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~----~~~~~~l~~l~~L 142 (198)
T 1ds9_A 98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITN----WGEIDKLAALDKL 142 (198)
T ss_dssp EEEEEEECCCHHHHHHHHHSSEEEESEEECCC----HHHHHHHTTTTTC
T ss_pred EECcCCcCCcCCccccCCCCCEEECCCCcCCc----hhHHHHHhcCCCC
Confidence 99999998876 678899999999999986 554 45555555
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=7e-10 Score=87.47 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=56.8
Q ss_pred EEEcccccccccccccccCCCCccEEeecC-ccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302 53 SIVGNCYKRIANLERFWGSMKSLTMLILDG-TAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130 (188)
Q Consensus 53 L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~ 130 (188)
++.++. +.+..+|. +..+.+|+.|+|++ |.+..+|+ .+..+++|+.|++++|. +..++ |..+..+++|+.|+
T Consensus 13 v~~~~~-n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~---~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRD-GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA---PDAFHFTPRLSRLN 86 (347)
T ss_dssp EECCSS-CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC---TTGGGSCSCCCEEE
T ss_pred EEcCCC-CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeC---HHHhcCCcCCCEEe
Confidence 345541 25666666 56666666666664 66665543 45666666666666665 54443 23345666666666
Q ss_pred ccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302 131 ISGTAIRQL-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 131 l~~~~i~~~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+++|.++.+ ..++ |+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 666666555 2222 6666666666653
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=8.5e-10 Score=79.07 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=73.5
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.++|++|++++ +.+..+ |..+.++++|++|++++|++..+|+. +..+++|++|++++|. +..++. ..+..++
T Consensus 32 ~~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~---~~~~~l~ 105 (174)
T 2r9u_A 32 PTDKQRLWLNN--NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPR---GAFDNLK 105 (174)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCT
T ss_pred CCCCcEEEeCC--CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCH---HHhcccc
Confidence 37899999999 688776 56778999999999999999999876 5889999999999997 777652 2368899
Q ss_pred cccEEEccCCcccc
Q 047302 125 SLEELDISGTAIRQ 138 (188)
Q Consensus 125 ~L~~L~l~~~~i~~ 138 (188)
+|+.|++++|.+..
T Consensus 106 ~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 106 SLTHIYLYNNPWDC 119 (174)
T ss_dssp TCSEEECCSSCBCT
T ss_pred CCCEEEeCCCCccc
Confidence 99999999998763
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1e-09 Score=78.26 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=72.9
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+++++|++++ +.+..+ |..+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++. ..+..++
T Consensus 29 ~~~l~~L~L~~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~ 102 (170)
T 3g39_A 29 PTTTQVLYLYD--NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPR---GAFDNLK 102 (170)
T ss_dssp CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCT
T ss_pred CCCCcEEEcCC--CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCH---HHhcCCC
Confidence 47899999999 788777 56678999999999999999988765 5899999999999997 777652 3468899
Q ss_pred cccEEEccCCccc
Q 047302 125 SLEELDISGTAIR 137 (188)
Q Consensus 125 ~L~~L~l~~~~i~ 137 (188)
+|+.|++++|.+.
T Consensus 103 ~L~~L~L~~N~~~ 115 (170)
T 3g39_A 103 SLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEeCCCCCC
Confidence 9999999999775
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=2.3e-11 Score=97.40 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=54.3
Q ss_pred ccceecEEEEccccccccc-----ccccccCCCCccEEeecCccCcc-----cchhhhcC---------CCCcEEEccCC
Q 047302 46 YGTSVGTSIVGNCYKRIAN-----LERFWGSMKSLTMLILDGTAIRE-----LPLSVEYL---------TGLFVLNFKDW 106 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~ 106 (188)
.+++|++|++++ +.+.. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 92 KCPKLHTVRLSD--NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TCTTCCEEECCS--CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hCCcccEEECCC--CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 345555555555 23322 44444555556666666555531 12222222 55666666655
Q ss_pred CCCccCCCccc---cccCCCCcccEEEccCCcccc----------cCCCCCCCEeccCCCCCC
Q 047302 107 QNLECLPSPIS---ENLGKVDSLEELDISGTAIRQ----------LSRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 107 ~~l~~l~~~~~---~~l~~l~~L~~L~l~~~~i~~----------~~~l~~L~~L~l~~~~l~ 156 (188)
. +.. ..++ ..+..+++|+.|++++|.+++ +..+++|+.|++++|.++
T Consensus 170 ~-l~~--~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 170 R-LEN--GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp C-CTG--GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred C-CCc--HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 4 321 1111 234456666777777766652 145666777777777663
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.01 E-value=3.9e-10 Score=94.97 Aligned_cols=104 Identities=28% Similarity=0.305 Sum_probs=62.8
Q ss_pred eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302 49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE 128 (188)
Q Consensus 49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~ 128 (188)
+|+.|++++ |.+..+|. .+++|+.|++++|.+..+|. .+++|+.|++++|. +..+| . +. ++|+.
T Consensus 121 ~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp----~-l~--~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDN--NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLP----E-LP--ESLEA 184 (571)
T ss_dssp TCCEEECCS--SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----C-CC--TTCCE
T ss_pred CCCEEECCC--CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcc----h-hh--CCCCE
Confidence 556666665 45555554 46677777777777777664 45677777777775 55543 2 23 66667
Q ss_pred EEccCCcccccCCCC-CC-------CEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302 129 LDISGTAIRQLSRLC-SL-------TKWDLSDCNLPVEGGEIPRDICYLCLL 172 (188)
Q Consensus 129 L~l~~~~i~~~~~l~-~L-------~~L~l~~~~l~~~~~~lp~~l~~l~~L 172 (188)
|++++|.++.+..++ +| +.|++++|.++. +|..+..+++|
T Consensus 185 L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~----lp~~l~~l~~L 232 (571)
T 3cvr_A 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH----IPENILSLDPT 232 (571)
T ss_dssp EECCSSCCSSCCCCC--------CCEEEECCSSCCCC----CCGGGGGSCTT
T ss_pred EECcCCCCCchhhHHHhhhcccccceEEecCCCccee----cCHHHhcCCCC
Confidence 777777666541122 45 666666666665 66665555555
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.98 E-value=5.2e-10 Score=88.55 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh-------hhcCCCCchhhhcc
Q 047302 140 SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL-------FKDEPESNSQIRRN 186 (188)
Q Consensus 140 ~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L-------~~~lp~~~~~l~~L 186 (188)
..+++|+.|++++|+++. +|.. +..++.| ...+|. +.++.+|
T Consensus 199 ~~l~~L~~LdLs~N~l~~----lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHS----LPSYGLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp TTEECCSEEECTTSCCCC----CCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred ccCcccchhhcCCCCcCc----cChhhhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 456778888888888877 6653 4445544 455663 4444444
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=5.9e-10 Score=89.19 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred cccCCCCccEEeecCccC-----cccchhhhcCCCCcEEEccCCCCCccCC-Ccccccc--CCCCcccEEEccCCcccc-
Q 047302 68 FWGSMKSLTMLILDGTAI-----RELPLSVEYLTGLFVLNFKDWQNLECLP-SPISENL--GKVDSLEELDISGTAIRQ- 138 (188)
Q Consensus 68 ~~~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~l--~~l~~L~~L~l~~~~i~~- 138 (188)
.+..+++|++|++++|.+ ..+|..+..+++|++|++++|. +.... ..+|..+ +.+++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 344555555555555555 3345455555555555555554 22110 0012333 225556666666665555
Q ss_pred ----c-----CCCCCCCEeccCCCCCCC
Q 047302 139 ----L-----SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 139 ----~-----~~l~~L~~L~l~~~~l~~ 157 (188)
+ ..+++|++|++++|.++.
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 2 234566666666665554
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.93 E-value=9.2e-10 Score=87.14 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=35.1
Q ss_pred ccceecEEEEccccccc-ccccc-cccCCCCccE-EeecCccCcccc-hhhhcCCCCcEEEccCCCCCccC
Q 047302 46 YGTSVGTSIVGNCYKRI-ANLER-FWGSMKSLTM-LILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECL 112 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i-~~l~~-~~~~l~~L~~-L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l 112 (188)
++++|++|++++ +.+ +.+|. .+.+++++.. +.+.+|++..++ ..+..+++|+++++++|. +..+
T Consensus 52 ~l~~L~~L~Ls~--N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~ 119 (350)
T 4ay9_X 52 GFGDLEKIEISQ--NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHL 119 (350)
T ss_dssp TCTTCCEEEEEC--CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSC
T ss_pred CCCCCCEEECcC--CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccC
Confidence 466666666666 333 43442 3355555443 344455666553 335666777777776664 4443
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.81 E-value=1.1e-09 Score=89.31 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=21.4
Q ss_pred cCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302 120 LGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~ 156 (188)
+..+++|+.|++++|.+++. ...++|++|++++|.++
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 34456666666666665543 12456666666666665
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=1.2e-08 Score=81.01 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred ccc-eecEEEEcccccccccc-cccccCC-----CCccEEeecCccCcccc-hh----hhcC-CCCcEEEccCCCCCccC
Q 047302 46 YGT-SVGTSIVGNCYKRIANL-ERFWGSM-----KSLTMLILDGTAIRELP-LS----VEYL-TGLFVLNFKDWQNLECL 112 (188)
Q Consensus 46 ~l~-~L~~L~l~~~~~~i~~l-~~~~~~l-----~~L~~L~l~~~~i~~lp-~~----~~~l-~~L~~L~l~~~~~l~~l 112 (188)
.++ +|++|++++ +.+... +..+..+ ++|++|++++|.+...+ .. +..+ ++|++|++++|. +...
T Consensus 48 ~~~~~L~~L~Ls~--N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNLSG--NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp TCCTTCCEEECCS--SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred hCCCceeEEECcC--CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 355 788888887 455432 3333332 77888888888876443 22 3444 778888888876 5444
Q ss_pred CCc-cccccCC-CCcccEEEccCCccccc---------CCCC-CCCEeccCCCCCCC
Q 047302 113 PSP-ISENLGK-VDSLEELDISGTAIRQL---------SRLC-SLTKWDLSDCNLPV 157 (188)
Q Consensus 113 ~~~-~~~~l~~-l~~L~~L~l~~~~i~~~---------~~l~-~L~~L~l~~~~l~~ 157 (188)
+.. +...+.. ..+|++|++++|.+++. ..++ +|++|++++|.++.
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 311 1112333 35777888888777643 2343 77777777777764
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.73 E-value=2.8e-08 Score=78.85 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=82.6
Q ss_pred ccceecEEEEccccccccccc-----ccccCCC-CccEEeecCccCccc-chhhhcC-----CCCcEEEccCCCCCccCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-----RFWGSMK-SLTMLILDGTAIREL-PLSVEYL-----TGLFVLNFKDWQNLECLP 113 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-----~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~~l~~l~ 113 (188)
...+|++|++++ +.+...+ +.+..++ +|++|++++|.+... +..+..+ ++|++|++++|. +....
T Consensus 20 ~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 20 IPHGVTSLDLSL--NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp SCTTCCEEECTT--SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCCCceEEEccC--CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence 456699999999 4675554 5667787 899999999999854 5455554 999999999997 55432
Q ss_pred C-ccccccCCC-CcccEEEccCCccccc---------CC-CCCCCEeccCCCCCCC
Q 047302 114 S-PISENLGKV-DSLEELDISGTAIRQL---------SR-LCSLTKWDLSDCNLPV 157 (188)
Q Consensus 114 ~-~~~~~l~~l-~~L~~L~l~~~~i~~~---------~~-l~~L~~L~l~~~~l~~ 157 (188)
. .+...+..+ ++|+.|++++|.+++. .. .++|++|++++|.+.+
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 1 111224555 8999999999999876 23 3689999999999884
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.70 E-value=9.7e-09 Score=83.59 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=51.0
Q ss_pred cceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc-cchhh-hcCC----CCcEEEccCCCCCccCC-C
Q 047302 47 GTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE-LPLSV-EYLT----GLFVLNFKDWQNLECLP-S 114 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~-~~l~----~L~~L~l~~~~~l~~l~-~ 114 (188)
+++|+++++++| .+. .++..+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|. +.... .
T Consensus 27 ~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~ 103 (461)
T 1z7x_W 27 LQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 103 (461)
T ss_dssp HTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred cCCccEEEccCC--CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence 555666666653 332 334444555566666666665542 12222 2233 46666666654 33110 1
Q ss_pred ccccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302 115 PISENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP 156 (188)
Q Consensus 115 ~~~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~ 156 (188)
.++..+..+++|+.|++++|.+.+. ...++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 1233445555566666665555432 12334555555555544
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=4.7e-08 Score=76.91 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=69.6
Q ss_pred cEEeecCc-cCcccchhhhcCCCCcEEEccC-CCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEe
Q 047302 76 TMLILDGT-AIRELPLSVEYLTGLFVLNFKD-WQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKW 148 (188)
Q Consensus 76 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L 148 (188)
..++.+++ ++..+|. +..+++|+.|++++ |. +..++ +..++.+++|+.|++++|.++.+ ..+++|+.|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLE---LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEEC---GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcC---hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 45688887 8999998 99999999999997 76 77765 34578999999999999999876 679999999
Q ss_pred ccCCCCCCCCCCCCChh
Q 047302 149 DLSDCNLPVEGGEIPRD 165 (188)
Q Consensus 149 ~l~~~~l~~~~~~lp~~ 165 (188)
+|++|+++. +|..
T Consensus 86 ~l~~N~l~~----~~~~ 98 (347)
T 2ifg_A 86 NLSFNALES----LSWK 98 (347)
T ss_dssp ECCSSCCSC----CCST
T ss_pred eCCCCccce----eCHH
Confidence 999999997 6654
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=79.54 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=60.8
Q ss_pred cceecEEEEccccccccc-----ccccc-cCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccCC-C
Q 047302 47 GTSVGTSIVGNCYKRIAN-----LERFW-GSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECLP-S 114 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~-----l~~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l~-~ 114 (188)
+.+|+.|++++ +.+.. +...+ ...++|++|++++|.+.. ++..+...++|++|++++|. +.... .
T Consensus 125 L~~L~~L~Ls~--n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~ 201 (372)
T 3un9_A 125 FLRARKLGLQL--NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE 201 (372)
T ss_dssp HHTEEEEECCS--SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH
T ss_pred HHhccHhhcCC--CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH
Confidence 44566666666 34422 12222 234567777777776632 33445666777777777775 33211 0
Q ss_pred ccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302 115 PISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 115 ~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~ 157 (188)
.+++.+...++|+.|++++|.+++. ...++|++|++++|.+.+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1123345556777777777777653 345677777777777663
No 138
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=9.7e-08 Score=68.92 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=83.7
Q ss_pred ccceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccC-CC
Q 047302 46 YGTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECL-PS 114 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l-~~ 114 (188)
..++|++|++++| ..+. .+.+.+...++|++|++++|.+.. +...+...++|++|++++|. +..- ..
T Consensus 34 ~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred cCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 5789999999984 2663 355666778899999999999852 44556777899999999997 4321 01
Q ss_pred ccccccCCCCcccEEEc--cCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302 115 PISENLGKVDSLEELDI--SGTAIRQL---------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 115 ~~~~~l~~l~~L~~L~l--~~~~i~~~---------~~l~~L~~L~l~~~~l~~ 157 (188)
.+.+.+...++|+.|++ ++|.+.+. ...++|+.|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 12355677789999999 88988775 556889999999998764
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.34 E-value=1.3e-07 Score=79.28 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=29.2
Q ss_pred ccceecEEEEccccccccc----ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCC
Q 047302 46 YGTSVGTSIVGNCYKRIAN----LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDW 106 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~----l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~ 106 (188)
.+++|++|++++| ..... ++.....+++|++|++++|.+. .++..+..+++|+.|++++|
T Consensus 162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 3566777777664 21111 2223344555555555555543 22333444555555555554
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=2.4e-07 Score=74.04 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=78.3
Q ss_pred ccceecEEEEccccccccc--ccccccCCCCccEEeecCccCccc-chh----h-hcCCCCcEEEccCCCCCccCC-Ccc
Q 047302 46 YGTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGTAIREL-PLS----V-EYLTGLFVLNFKDWQNLECLP-SPI 116 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~~i~~l-p~~----~-~~l~~L~~L~l~~~~~l~~l~-~~~ 116 (188)
...+|+.|++++| .+.. +......+++++.|++++|.+... ... + ...+.|+.|++++|. +.... ..+
T Consensus 99 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l 175 (372)
T 3un9_A 99 GRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVL 175 (372)
T ss_dssp CSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHH
T ss_pred CCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHH
Confidence 3478999999994 5532 223334566899999999998633 222 2 246889999999997 54321 112
Q ss_pred ccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302 117 SENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 117 ~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~ 157 (188)
+..+...++|++|++++|.+++. ...++|++|++++|.+++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 34457788999999999998764 566789999999999885
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.25 E-value=1.3e-07 Score=79.27 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=69.4
Q ss_pred ccceecEEEEcccccccccccccc-cCCCCccEEeecCc-cCcc--cchhhhcCCCCcEEEccCCCCCccCCC-cccccc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFW-GSMKSLTMLILDGT-AIRE--LPLSVEYLTGLFVLNFKDWQNLECLPS-PISENL 120 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~-~~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~l 120 (188)
.+++|+.|++++| ..-...+..+ ..+++|++|++++| .+.. ++.....+++|++|++++|. +..... .++...
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4678888888885 3222223333 25788999999888 5553 55555678899999998886 433221 122223
Q ss_pred CCCCcccEEEccCCc--cccc------CCCCCCCEeccCCC
Q 047302 121 GKVDSLEELDISGTA--IRQL------SRLCSLTKWDLSDC 153 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~--i~~~------~~l~~L~~L~l~~~ 153 (188)
..+++|+.|++++|. +... ..+++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 467788888888886 2221 45688888888887
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.20 E-value=1.9e-06 Score=72.17 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=62.1
Q ss_pred eecEEEEccccccc--ccccccccCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccCC-Ccccccc
Q 047302 49 SVGTSIVGNCYKRI--ANLERFWGSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECLP-SPISENL 120 (188)
Q Consensus 49 ~L~~L~l~~~~~~i--~~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~l 120 (188)
+|++|++++| ..+ ..++.....+++|++|++++|.+.. ++.....+++|+.|++++|. +.... ..++..+
T Consensus 139 ~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKC-SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESC-EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHH
T ss_pred cCcEEECcCC-CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHH
Confidence 4888888887 533 2233444567888888888887642 34445677888888888776 33221 1223334
Q ss_pred CCCCcccEEEccCCccccc----CCCCCCCEeccC
Q 047302 121 GKVDSLEELDISGTAIRQL----SRLCSLTKWDLS 151 (188)
Q Consensus 121 ~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~ 151 (188)
..+++|+.|++.+|.+.++ ..+++|+.|+++
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 5677788888877766553 344445555444
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.16 E-value=9.4e-08 Score=80.09 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=28.8
Q ss_pred ccceecEEEEccccc-cc--ccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEc
Q 047302 46 YGTSVGTSIVGNCYK-RI--ANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNF 103 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~-~i--~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l 103 (188)
.+++|+.|++++| . .+ ..++.....+++|++|++++| .+..+|..+..+++|+.+++
T Consensus 182 ~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 182 TYTSLVSLNISCL-ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp TCCCCCEEECTTC-CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred cCCcCcEEEeccc-CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 4556666666664 2 11 112222234566666666665 33344444555555555543
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=1.1e-05 Score=62.93 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=42.9
Q ss_pred CCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc-EEEccCCccccc-----CCCCC
Q 047302 72 MKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE-ELDISGTAIRQL-----SRLCS 144 (188)
Q Consensus 72 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~-~L~l~~~~i~~~-----~~l~~ 144 (188)
+.+|+.+++++|++..+|.. +..+.+|+.+++..| ++.++. ..+..+.+|+ .+++.+ .++.+ ..+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~---~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ---RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH---HHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 45566666666666555443 555566666666554 344431 2245555665 666555 33333 45556
Q ss_pred CCEeccCCCCCCC
Q 047302 145 LTKWDLSDCNLPV 157 (188)
Q Consensus 145 L~~L~l~~~~l~~ 157 (188)
|+.++++.|+++.
T Consensus 299 L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 299 LRYVLATGDKITT 311 (329)
T ss_dssp EEEEEECSSCCCE
T ss_pred CCEEEeCCCccCc
Confidence 6666665555554
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=1.4e-05 Score=62.42 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=75.7
Q ss_pred cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCc-EEEccCCCCCccCCCccccccCCC
Q 047302 47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLF-VLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
+++|+.+++++ +.++.+++ .+.++.+|+.+++..| ++.++. .+..+.+|+ .+.+.. . ++.++ +..+..+
T Consensus 225 ~~~L~~l~L~~--n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~---~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISK--TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIE---FGAFMGC 296 (329)
T ss_dssp CTTCCEEECTT--BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEEC---TTTTTTC
T ss_pred cCCCeEEECCC--CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEc---hhhhhCC
Confidence 78899999998 67888875 5688999999999987 777765 478899999 999987 3 66664 2346889
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEec
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWD 149 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~ 149 (188)
++|+.+++.++.++.+ ..+++|+.+.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9999999988888776 5677787765
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=1.2e-05 Score=61.27 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=32.7
Q ss_pred hcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCC--CCCEeccCCCCCC
Q 047302 93 EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLC--SLTKWDLSDCNLP 156 (188)
Q Consensus 93 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~--~L~~L~l~~~~l~ 156 (188)
..+++|+.|++++|. +..++ .+|..+..+++|+.|++++|.++++ ..+. +|+.|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~-~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLD-DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCG-GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCC-CCCCc-cchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 345566666666664 43331 1122234556666666666665544 2222 5666666666665
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=1.4e-05 Score=63.62 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=62.2
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhh--cCCCCcEEEccCCCC--CccC-CCccccc
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVE--YLTGLFVLNFKDWQN--LECL-PSPISEN 119 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~--~l~~L~~L~l~~~~~--l~~l-~~~~~~~ 119 (188)
.+++|+.|.+++| ..+ .++. + .+++|+.|++..+.+. .....+. .+++|++|+++.+.. .... ...+...
T Consensus 170 ~~P~L~~L~L~g~-~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGT-NNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECC-BTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCC-CCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3566777777664 222 2332 2 2567777777766654 2222232 678888888753110 0000 0000111
Q ss_pred c--CCCCcccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302 120 L--GKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 120 l--~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~ 157 (188)
+ ..+++|+.|++.+|.+.+. ..+++|++|++++|.+.+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 1 3478899999988887653 467889999998888775
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=8.3e-06 Score=58.29 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=42.8
Q ss_pred CccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCC----CcccEEEccCCc-cccc-----CCC
Q 047302 74 SLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV----DSLEELDISGTA-IRQL-----SRL 142 (188)
Q Consensus 74 ~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l----~~L~~L~l~~~~-i~~~-----~~l 142 (188)
.|+.|+++++.+.. --..+..+++|++|++++|..++.. . -..+..+ ++|+.|++++|. |++. ..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--C-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--H-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--H-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46666666666542 1224556666666666666433211 0 0122332 356677776663 5553 566
Q ss_pred CCCCEeccCCCC
Q 047302 143 CSLTKWDLSDCN 154 (188)
Q Consensus 143 ~~L~~L~l~~~~ 154 (188)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 777777777774
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=4.6e-06 Score=60.03 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=70.7
Q ss_pred ccccccccCCCCccEEeecCc-cCc-----ccchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCc
Q 047302 63 ANLERFWGSMKSLTMLILDGT-AIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTA 135 (188)
Q Consensus 63 ~~l~~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~ 135 (188)
+.+...+...++|++|++++| .+. .+...+...++|++|++++|. +..- ...+.+.+...++|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 334556677899999999999 884 344567778999999999997 4321 11123445566889999999999
Q ss_pred cccc---------CCCCCCCEecc--CCCCCCC
Q 047302 136 IRQL---------SRLCSLTKWDL--SDCNLPV 157 (188)
Q Consensus 136 i~~~---------~~l~~L~~L~l--~~~~l~~ 157 (188)
|.+. ...++|++|++ ++|.+.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 8774 56678999999 8898885
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=3e-05 Score=55.37 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=62.2
Q ss_pred cceecEEEEcccccccccc-cccccCCCCccEEeecCc-cCcc-cchhhhcC----CCCcEEEccCCCCCccCCCccccc
Q 047302 47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGT-AIRE-LPLSVEYL----TGLFVLNFKDWQNLECLPSPISEN 119 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~-~i~~-lp~~~~~l----~~L~~L~l~~~~~l~~l~~~~~~~ 119 (188)
-..|+.+|+++| . +... -..+.++++|+.|++++| .+.+ --..+..+ ++|++|++++|..++.. . -..
T Consensus 60 ~~~L~~LDLs~~-~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--G-l~~ 134 (176)
T 3e4g_A 60 KYKIQAIDATDS-C-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--G-IIA 134 (176)
T ss_dssp CCCEEEEEEESC-C-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--H-HHH
T ss_pred CceEeEEeCcCC-C-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--H-HHH
Confidence 347999999998 5 5332 134478999999999999 4652 22345543 47999999999755432 1 134
Q ss_pred cCCCCcccEEEccCCc-cccc
Q 047302 120 LGKVDSLEELDISGTA-IRQL 139 (188)
Q Consensus 120 l~~l~~L~~L~l~~~~-i~~~ 139 (188)
+..+++|+.|++++|. +++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH
T ss_pred HhcCCCCCEEECCCCCCCCch
Confidence 5778999999999985 6553
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=2.7e-05 Score=59.34 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=56.0
Q ss_pred cCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcccc--------
Q 047302 70 GSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQ-------- 138 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~-------- 138 (188)
.++++|+.|++++|++..++ ..+..+++|+.|++++|. +..+. .+ ..+..+ +|++|++.+|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-EL-DKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GG-GGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hh-hhcccC-CcceEEccCCcCccccCcchhH
Confidence 46788999999999887654 456788999999999987 55441 11 223334 88999999998874
Q ss_pred ----cCCCCCCCEec
Q 047302 139 ----LSRLCSLTKWD 149 (188)
Q Consensus 139 ----~~~l~~L~~L~ 149 (188)
+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 16788888886
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.59 E-value=2.9e-05 Score=61.74 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=75.2
Q ss_pred cceecEEEEccccccccc-ccccc--cCCCCccEEeecCc--c------Ccccchhh--hcCCCCcEEEccCCCCCcc-C
Q 047302 47 GTSVGTSIVGNCYKRIAN-LERFW--GSMKSLTMLILDGT--A------IRELPLSV--EYLTGLFVLNFKDWQNLEC-L 112 (188)
Q Consensus 47 l~~L~~L~l~~~~~~i~~-l~~~~--~~l~~L~~L~l~~~--~------i~~lp~~~--~~l~~L~~L~l~~~~~l~~-l 112 (188)
+++|+.|++..| .+.. ....+ ..+++|++|+++.+ . +..+.+.+ ..+++|++|++.+|. +.. .
T Consensus 192 ~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~ 268 (362)
T 2ra8_A 192 RPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVV 268 (362)
T ss_dssp CTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHH
T ss_pred CCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHH
Confidence 678999999875 4422 11222 36889999998631 1 22332222 357999999999886 321 1
Q ss_pred CCccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302 113 PSPISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL 171 (188)
Q Consensus 113 ~~~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~ 171 (188)
...+ .....+++|+.|+++.|.+.+. ..+++|+.|++++|.+.+ ..+..+..
T Consensus 269 ~~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d------~~~~~l~~ 329 (362)
T 2ra8_A 269 VEMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD------EMKKELQK 329 (362)
T ss_dssp HHHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH------HHHHHHHH
T ss_pred HHHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH------HHHHHHHH
Confidence 1111 1113578999999999988773 457899999999998774 44555554
No 153
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00053 Score=49.76 Aligned_cols=108 Identities=20% Similarity=0.123 Sum_probs=71.6
Q ss_pred ccceecEEEEcccccccc-----cccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCccC-CC
Q 047302 46 YGTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PS 114 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~ 114 (188)
.-+.|+.|+++++ +.+. .+.+.+..-++|+.|+|++|++. .+-..+..-+.|++|++++|. +..- ..
T Consensus 39 ~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred cCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 4568888999873 3552 35556666678999999999884 344556777889999999887 3211 11
Q ss_pred ccccccCCCCcccEEEccCCc---cccc---------CCCCCCCEeccCCCCC
Q 047302 115 PISENLGKVDSLEELDISGTA---IRQL---------SRLCSLTKWDLSDCNL 155 (188)
Q Consensus 115 ~~~~~l~~l~~L~~L~l~~~~---i~~~---------~~l~~L~~L~l~~~~l 155 (188)
.+.+.+..-+.|+.|+++++. +.+. ..-++|+.|+++.+.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 123445666778999997653 3322 4446788888876653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.84 E-value=0.0048 Score=49.53 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=25.3
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKD 105 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~ 105 (188)
++.+|+.++++. +.+..++...-...+|+.+.+..+ +..++. .+..+.+|+.+.+..
T Consensus 178 ~c~~L~~l~l~~--n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 178 YCYNLKKADLSK--TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCEEECTT--SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CcccCCeeecCC--CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 455566666655 344444432222344444444422 333322 244445555555443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.37 E-value=0.019 Score=46.01 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred cccCCCCccEEeecCccCc-----ccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--
Q 047302 68 FWGSMKSLTMLILDGTAIR-----ELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-- 139 (188)
Q Consensus 68 ~~~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-- 139 (188)
.+.++.+|+.+.+.++.+. .++ ..+..+.+|+.+.+..+ +..+.. ..+..+.+|+.+.+..+ ++.+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~---~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ---GLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT---TTTTTCCSCCEEEECTT-CCEECT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh---hhhcCCCCccEEEECcc-ccEEcH
Confidence 4466677777777666543 343 24666777777777642 444432 23566778888887544 4433
Q ss_pred ---CCCCCCCEeccCCCCCCC
Q 047302 140 ---SRLCSLTKWDLSDCNLPV 157 (188)
Q Consensus 140 ---~~l~~L~~L~l~~~~l~~ 157 (188)
..+ +|+.+++..|.+..
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCB
T ss_pred HhCCCC-CCCEEEEcCCCCcc
Confidence 455 78888888876554
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.33 E-value=0.0021 Score=46.65 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=65.0
Q ss_pred ccccccCCCCccEEeecCc-cCc-----ccchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCccc
Q 047302 65 LERFWGSMKSLTMLILDGT-AIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTAIR 137 (188)
Q Consensus 65 l~~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~i~ 137 (188)
+...+..-+.|++|+++++ +|. .+-..+..-+.|+.|++++|. +... ...+.+.+..-+.|+.|++.+|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4444466678999999986 774 344567778999999999997 4321 1223445556688999999999998
Q ss_pred cc---------CCCCCCCEeccCCCC
Q 047302 138 QL---------SRLCSLTKWDLSDCN 154 (188)
Q Consensus 138 ~~---------~~l~~L~~L~l~~~~ 154 (188)
+. ..-++|+.|+|++|.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCc
Confidence 76 455679999998763
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.18 E-value=0.0087 Score=40.23 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=36.1
Q ss_pred EEEEcccccccc--cccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302 52 TSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ 107 (188)
Q Consensus 52 ~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 107 (188)
.++.++ +.++ .+|..+ ..+++.|+|++|+|..+|.. +..+++|+.+++.+|.
T Consensus 12 ~v~Cs~--~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR--RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS--SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC--CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 456666 5666 677432 23688888888888877654 5667888888888875
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.10 E-value=0.012 Score=39.55 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=34.5
Q ss_pred cEEeecCccCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccc
Q 047302 76 TMLILDGTAIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIR 137 (188)
Q Consensus 76 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~ 137 (188)
..++-++++++ .+|..+. .+++.|++++|. +..++. ..+..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~---~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPP---GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCT---TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccCh---hhhhhccccCEEEecCCCee
Confidence 35566666666 6664322 457777777776 666652 23456667777777777553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.44 E-value=0.084 Score=41.82 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=51.0
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
++..|+.+.+.. .. ..+. ..+.++..|+.+.+. +.+..++. .+..+.+|+.+.+..+ ++++.. ..+..+
T Consensus 263 ~c~~L~~i~lp~--~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---~aF~~C 333 (394)
T 4gt6_A 263 SCAYLASVKMPD--SV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD---DAFAGC 333 (394)
T ss_dssp TCSSCCEEECCT--TC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTC
T ss_pred ecccccEEeccc--cc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH---hHhhCC
Confidence 455566666543 22 2222 233556666666664 33444543 3555667777766543 344431 224566
Q ss_pred CcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302 124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDC 153 (188)
Q Consensus 124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~ 153 (188)
.+|+.+.+..+ ++.+ ..+++|+.+++.++
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 66776666433 3332 56666766666544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.97 E-value=0.088 Score=41.70 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=67.1
Q ss_pred cccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302 45 TYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122 (188)
Q Consensus 45 ~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~ 122 (188)
.++..|+.+.+.. .+..+++ .+.++.+|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ ++++.. ..+..
T Consensus 285 ~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~---~aF~~ 355 (394)
T 4gt6_A 285 MNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE---SAFSN 355 (394)
T ss_dssp TTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG---GGGTT
T ss_pred ccccccccccCCC---cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH---hHhhC
Confidence 3678899998864 5666663 5678899999999864 666643 5788999999999764 555542 34688
Q ss_pred CCcccEEEccCCcccc--cCCCCCCCEeccCCCCC
Q 047302 123 VDSLEELDISGTAIRQ--LSRLCSLTKWDLSDCNL 155 (188)
Q Consensus 123 l~~L~~L~l~~~~i~~--~~~l~~L~~L~l~~~~l 155 (188)
+.+|+.+++.++.... ......|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 9999999998875432 25556787777665543
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.17 E-value=0.32 Score=38.08 Aligned_cols=75 Identities=11% Similarity=0.169 Sum_probs=35.9
Q ss_pred cCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCC
Q 047302 70 GSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLC 143 (188)
Q Consensus 70 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~ 143 (188)
.++..++.+.+..+ +..++. .+..+.+|+.+.+.++. ++.+.. ..+..+.+|+.+.+..+ ++.+ .+++
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEP---RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECT---TTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccc-cceehh---hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 44455555555432 333332 24555666666665543 444431 22455666666666432 2222 4445
Q ss_pred CCCEecc
Q 047302 144 SLTKWDL 150 (188)
Q Consensus 144 ~L~~L~l 150 (188)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 5555544
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.73 E-value=0.42 Score=37.73 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=28.1
Q ss_pred hhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302 92 VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDC 153 (188)
Q Consensus 92 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~ 153 (188)
+..+.+|+.+.+..+ ++.+.. ..+..+.+|+.+++..+ ++.+ ..+++|+.+++..+
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGE---EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc--cceech---hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 334555555555442 333321 22455666666666432 3333 45566666666544
No 163
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.50 E-value=0.18 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhCC-CCceeeEEEecCCCCChhhHhhhhhh----ccCcccceecEEEEcc
Q 047302 2 DSHLEKLTILMDKG-PNDVRMIGICDMGGIGKVALAKIVSR----DHGTYGTSVGTSIVGN 57 (188)
Q Consensus 2 ~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~ 57 (188)
+..++++..++... ..+..++.++||+|+||+++|..+++ .....+...-+++++.
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~ 194 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence 45677888776554 34679999999999999999999885 3333455555566665
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.93 E-value=0.35 Score=37.80 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.6
Q ss_pred ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l 123 (188)
++.+|+.+.+.. .+..++ ..+.++.+|+.+.+.++.++.++. .+.++.+|+.+.+..+ ++.+.. ..+..+
T Consensus 261 ~~~~l~~i~l~~---~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~---~aF~~C 332 (379)
T 4h09_A 261 NCTALKTLNFYA---KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV---YAFKNC 332 (379)
T ss_dssp TCTTCCEEEECC---CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTC
T ss_pred eeehhccccccc---cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH---HHhhCC
Confidence 455566666643 344444 355788999999999998988864 5788999999999764 555542 235778
Q ss_pred CcccEEEccC
Q 047302 124 DSLEELDISG 133 (188)
Q Consensus 124 ~~L~~L~l~~ 133 (188)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 8898887743
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.01 E-value=0.63 Score=36.68 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=59.5
Q ss_pred ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302 46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD 124 (188)
Q Consensus 46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~ 124 (188)
.+..++...... ..+. ...+..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+..+ ++++.. ..+..+.
T Consensus 274 ~~~~l~~~~~~~--~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---~aF~~c~ 343 (394)
T 4fs7_A 274 NCSGLKKVIYGS--VIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK---RSFRGCT 343 (394)
T ss_dssp TCTTCCEEEECS--SEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT---TTTTTCT
T ss_pred cccccceeccCc--eeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH---HhccCCC
Confidence 455666666554 2221 123466778888888654 555543 4677888888888653 455532 2356788
Q ss_pred cccEEEccCCccccc-----CCCCCCCEeccCC
Q 047302 125 SLEELDISGTAIRQL-----SRLCSLTKWDLSD 152 (188)
Q Consensus 125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~ 152 (188)
+|+.+++..+ ++.+ ..+++|+.+++..
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 8888888655 4433 6677788877643
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.26 E-value=0.98 Score=40.76 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
+..++++..++....+..+.+.++||+|+||++++..++..
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 46788888888766678899999999999999999876654
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=83.07 E-value=1.5 Score=36.40 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhh
Q 047302 2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSR 41 (188)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (188)
+..+.++...+....++.+.+.++|++|+||++++..++.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4567778877776556678999999999999999987654
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=66.45 E-value=5.5 Score=36.34 Aligned_cols=38 Identities=21% Similarity=0.032 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhh
Q 047302 3 SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSR 41 (188)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (188)
..++++..++... ...+++.++||+|+||++++..+++
T Consensus 135 ~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 135 QPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp HHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 4567777666542 2468999999999999999987764
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=26.58 E-value=1e+02 Score=20.28 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++++...+.... -..+-+.|-.|+||++++..+...
T Consensus 29 ~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 29 EEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 34556665555432 245678999999999998876544
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=24.81 E-value=61 Score=24.57 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhCC--CCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKG--PNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++++..++... .+.-..+-++|..|+||++++..+...
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4566666665432 234467889999999999999876654
No 171
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.97 E-value=83 Score=23.40 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++++...+... ..+-+.|..|+||+++.......
T Consensus 19 ~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 19 EESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH
Confidence 4567777766542 67889999999999998776544
No 172
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=23.91 E-value=51 Score=21.61 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.1
Q ss_pred eEEEecCCCCChhhHhhhhhhc
Q 047302 21 MIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
.+.+.|+.|.||+|+++.+ ..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 5778999999999999987 44
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.81 E-value=60 Score=24.58 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCC--CCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKG--PNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++.+..++... ...-..+-++|..|+||++++..+...
T Consensus 27 ~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556666655532 233457889999999999999876554
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.09 E-value=1e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhC--CCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDK--GPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++++..++.. ..+.-..+-++|..|+||++++..+.+.
T Consensus 27 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 27 DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 345566655433 1223357889999999999999877654
No 175
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=22.96 E-value=1.1e+02 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 15 GPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..+.-..+.+.|-+|.||+|++..+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445568999999999999999866443
No 176
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=20.49 E-value=66 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.5
Q ss_pred eEEEecCCCCChhhHhhhhhhc
Q 047302 21 MIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
.+-+.|+.|.||+|+++.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999987654
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.36 E-value=1.6e+02 Score=19.74 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302 3 SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..++.+..++.... ...+-+.|-.|+||++++..+...
T Consensus 24 ~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34566776666542 233788999999999998876543
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=20.32 E-value=69 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.7
Q ss_pred eeEEEecCCCCChhhHhhhhhh
Q 047302 20 RMIGICDMGGIGKVALAKIVSR 41 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~ 41 (188)
..+.+.|..|.||+|+++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999987653
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=20.12 E-value=69 Score=22.02 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=19.6
Q ss_pred eeEEEecCCCCChhhHhhhhhhc
Q 047302 20 RMIGICDMGGIGKVALAKIVSRD 42 (188)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~ 42 (188)
..+.+.|+.|+||+|++..+-..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999877544
Done!