BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047304
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
Length = 920
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/139 (86%), Positives = 129/139 (92%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
I+LEADGYQPYLISPEKGLRSLIK VLELAK+P+ LCVDEVHRVLVDIVSA+ANAT GLG
Sbjct: 392 IVLEADGYQPYLISPEKGLRSLIKTVLELAKDPARLCVDEVHRVLVDIVSASANATPGLG 451
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQRRMERQRREEE 120
R PPFKREV AIAS ALDGFKNEA+KMVVALVDMERAFVPPQHFI LVQRRMERQRREEE
Sbjct: 452 RYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEE 511
Query: 121 VKTRSSKKANEAEQAILNR 139
+K RSSKK +AEQ++LNR
Sbjct: 512 LKGRSSKKGQDAEQSLLNR 530
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2
Length = 914
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/139 (84%), Positives = 129/139 (92%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++LEADGYQPYLISPEKGLRSLIK VLELAK+P+ LCVDEVHRVLVDIVSA+ANAT GLG
Sbjct: 392 VVLEADGYQPYLISPEKGLRSLIKIVLELAKDPARLCVDEVHRVLVDIVSASANATPGLG 451
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQRRMERQRREEE 120
R PPFKREV AIAS ALDGFKNEA+KMVVALVDMERAFVPPQHFI LVQRRMERQRREEE
Sbjct: 452 RYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEE 511
Query: 121 VKTRSSKKANEAEQAILNR 139
+K RSSKK +AEQ++L+R
Sbjct: 512 LKGRSSKKGQDAEQSLLSR 530
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1
SV=1
Length = 624
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
I+ EADGYQP+LI+PE+G R LI+G L + P+ VD VH VL ++V + + T L
Sbjct: 395 IVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHYVLKELVRKSISETEELK 454
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQRRMERQRREEE 120
R P + E+AA A+ +L+ F+ E++K V+ LVDME A++ + F L Q +ER +
Sbjct: 455 RFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQ-EIERPVTNSK 513
Query: 121 VKTRSSKKAN 130
+T S A
Sbjct: 514 NQTASPSSAT 523
>sp|Q8LF21|DRP1C_ARATH Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1
SV=2
Length = 614
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++ EADGYQP+LI+PE+G R LI G + K P+ VD VH VL ++V + + T L
Sbjct: 390 VVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEATVDAVHFVLKELVRKSISETEELK 449
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHF--IHL 107
R P ++AA A+ AL+ F++E+RK V+ LVDME +++ + F +HL
Sbjct: 450 RFPTLASDIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHL 498
>sp|Q84XF3|DRP1B_ARATH Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2
SV=1
Length = 610
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++ EADGYQP+LI+PE+G R LI+ L + P+ VD VH +L D++ + T L
Sbjct: 389 LITEADGYQPHLIAPEQGYRRLIESCLVSIRGPAEAAVDAVHSILKDLIHKSMGETSELK 448
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQ 109
+ P + EV+ A +LD ++E+RK + LVDME ++ + F L Q
Sbjct: 449 QYPTLRVEVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQ 497
>sp|Q39828|SDL5A_SOYBN Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
Length = 610
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++ EADGYQP+LI+PE+G R LI+ L + P+ VD VH +L D+V A + TL L
Sbjct: 389 LITEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVHSLLKDLVHKAISETLDLK 448
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQ 109
+ P + EV A A +L+ ++E+++ + LVDME ++ F L Q
Sbjct: 449 QYPGLRVEVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQ 497
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2
SV=2
Length = 612
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
I+ E+DGYQP+LI+PE G R LI+G L + P+ V+ +H +L ++V A T L
Sbjct: 390 IVSESDGYQPHLIAPELGYRRLIEGSLNHFRGPAEASVNAIHLILKELVRKAIAETEELK 449
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHF--IHLVQRRM 112
R P + E+ A A+ +LD F+ E+ K V+ LVDME +++ F +H+ + M
Sbjct: 450 RFPSLQIELVAAANSSLDKFREESMKSVLRLVDMESSYLTVDFFRKLHVESQNM 503
>sp|Q39821|SDLCA_SOYBN Dynamin-related protein 12A OS=Glycine max PE=1 SV=1
Length = 610
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++ EADGYQP+LI+PE+G R LI+ L + P+ VD VH +L D+V A + TL L
Sbjct: 389 LITEADGYQPHLIAPEQGYRRLIESSLITIRGPAESAVDAVHSLLKDLVHKAMSETLDLK 448
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQ 109
+ P + EV A + +L+ ++E+++ + LVDME ++ F L Q
Sbjct: 449 QYPGLRVEVGAASVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQ 497
>sp|P42697|DRP1A_ARATH Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1
SV=3
Length = 610
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLG 60
++ EADGYQP+LI+PE+G R LI+ + + P+ VD VH +L D+V + N T+ L
Sbjct: 389 LVTEADGYQPHLIAPEQGYRRLIESSIVSIRGPAEASVDTVHAILKDLVHKSVNETVELK 448
Query: 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQ 109
+ P + EV A +LD + ++K + LVDME +++ F L Q
Sbjct: 449 QYPALRVEVTNAAIESLDKMREGSKKATLQLVDMECSYLTVDFFRKLPQ 497
>sp|P54861|DNM1_YEAST Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DNM1 PE=1 SV=1
Length = 757
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPP 64
+ G +P L PE L+K ++L EPS CV+ V+ L+ I +A L R P
Sbjct: 434 STGPRPTLFVPELAFDLLVKPQIKLLLEPSQRCVELVYEELMKICHKCGSAE--LARYPK 491
Query: 65 FKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQ-----RRMERQRR 117
K + + S L R V +L+D+ RA++ H F+ + + R+R
Sbjct: 492 LKSMLIEVISELLRERLQPTRSYVESLIDIHRAYINTNHPNFLSATEAMDDIMKTRRKRN 551
Query: 118 EEEVKTRSSKKANEAEQAI 136
+E +K++ S++ N I
Sbjct: 552 QELLKSKLSQQENGQTNGI 570
>sp|Q05193|DYN1_HUMAN Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2
Length = 864
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K ++ +EP CVD V+ +++S T L + P +
Sbjct: 397 GIRTGLFTPDMAFETIVKKQVKKIREPCLKCVD---MVISELISTVRQCTKKLQQYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQRREEEVKTR 124
E+ I + + + ++ V+ L+D+E A++ H FI +QR + K +
Sbjct: 454 EEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFAN---AQQRSNQMNKKK 510
Query: 125 SSKKANE 131
+S +E
Sbjct: 511 TSGNQDE 517
>sp|Q7SXN5|DNM1L_DANRE Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1
Length = 691
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAAN-ATLGLGRCP 63
A G +P L PE L+K ++ +EPS CV+ VH + I+ +N +T L R P
Sbjct: 398 ATGPRPALFVPEVSFELLVKRQVKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFP 457
Query: 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH-----FIHLVQRRMERQRR 117
+ + + L +MV LV +E A++ +H L+ +E QRR
Sbjct: 458 KLHDAIVEVVTSLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRR 516
>sp|P39053|DYN1_MOUSE Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2
Length = 867
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K ++ +EP CVD V+ +++S T L + P +
Sbjct: 397 GIRTGLFTPDMAFETIVKKQVKKIREPCLKCVD---MVISELISTVRQCTKKLQQYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQRREEEVKTR 124
E+ I + + + ++ V+ L+D+E A++ H FI +QR + K +
Sbjct: 454 EEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFAN---AQQRSNQMNKKK 510
Query: 125 SSKKANE 131
+S +E
Sbjct: 511 TSGNQDE 517
>sp|O00429|DNM1L_HUMAN Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2
Length = 736
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAAN-ATLGLGRCP 63
A G +P L PE L+K ++ +EPS CV+ VH + I+ +N +T L R P
Sbjct: 399 ATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFP 458
Query: 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH-----FIHLVQRRMERQRR 117
+ + + L +MV LV +E A++ +H L+ +E QRR
Sbjct: 459 KLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRR 517
>sp|Q8K1M6|DNM1L_MOUSE Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2
Length = 742
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAAN-ATLGLGRCP 63
A G +P L PE L+K ++ +EPS CV+ VH + I+ +N +T L R P
Sbjct: 405 ATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFP 464
Query: 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH-----FIHLVQRRMERQRR 117
+ + + L +MV LV +E A++ +H L+ +E QRR
Sbjct: 465 KLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRR 523
>sp|O35303|DNM1L_RAT Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1
Length = 755
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAAN-ATLGLGRCP 63
A G +P L PE L+K ++ +EPS CV+ VH + I+ +N +T L R P
Sbjct: 412 ATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFP 471
Query: 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH-----FIHLVQRRMERQRR 117
+ + + L +MV LV +E A++ +H L+ +E QRR
Sbjct: 472 KLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRR 530
>sp|Q2KIA5|DNM1L_BOVIN Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1
Length = 749
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAAN-ATLGLGRCP 63
A G +P L PE L+K ++ +EPS CV+ VH + I+ +N +T L R P
Sbjct: 412 ATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFP 471
Query: 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH-----FIHLVQRRMERQRR 117
+ + + L +MV LV +E A++ +H L+ +E QRR
Sbjct: 472 KLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRR 530
>sp|P21575|DYN1_RAT Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2
Length = 864
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ + +K ++ KEPS CVD V+ ++ S + L + P +
Sbjct: 397 GIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVD---MVVSELTSTIRKCSEKLQQYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQRREEEVKTR 124
E+ I + + + ++ V+ L+D+E A++ H FI +QR + K +
Sbjct: 454 EEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFAN---AQQRSNQMNKKK 510
Query: 125 SSKKANE 131
+S +E
Sbjct: 511 TSGNQDE 517
>sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1
Length = 870
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K + KEP CVD V+ +++S T L P +
Sbjct: 397 GVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVD---LVIQELISTVRQCTSKLSSYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH 103
E I + + + + ++ L+D+E++++ H
Sbjct: 454 EETERIVTTYIREREGRTKDQILLLIDIEQSYINTNH 490
>sp|P39054|DYN2_MOUSE Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2
Length = 870
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K + KEP CVD V+ +++S T L P +
Sbjct: 397 GVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVD---LVIQELISTVRQCTSKLSSYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH 103
E I + + + + ++ L+D+E++++ H
Sbjct: 454 EETERIVTTYIREREGRTKDQILLLIDIEQSYINTNH 490
>sp|P39055|DYN1_CAEEL Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3
Length = 830
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 12 LISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAA 71
L +P+ ++ K + KEPS CVD V L +++ A+ + R P + E+
Sbjct: 405 LFTPDMAFEAIAKKQITRLKEPSLKCVDLVVNELANVIRQCADT---MARYPRLRDELER 461
Query: 72 IASPALDGFKNEARKMVVALVDMERAFVPPQH 103
I + + A++ + +VD E A++ H
Sbjct: 462 IVVSHMREREQIAKQQIGLIVDYELAYMNTNH 493
>sp|Q08DF4|DYN1_BOVIN Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1
Length = 856
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ + +K ++ KEPS CVD V+ ++ + + L + P +
Sbjct: 397 GIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVD---MVVSELTATIRKCSEKLQQYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQRREEEVKTR 124
E+ I + + + ++ V+ L+D+E A++ H FI +QR + K +
Sbjct: 454 EEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFAN---AQQRSNQMNKKK 510
Query: 125 SSKKANE 131
+S +E
Sbjct: 511 ASGNQDE 517
>sp|P27619|DYN_DROME Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2
Length = 877
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K + L KEP CVD V + L +V T + R P +
Sbjct: 393 GIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRM---CTAKMSRYPRLR 449
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQRREEEVKTR 124
E I + + ++ ++ ++ L+D E A++ H FI + + E KT
Sbjct: 450 EETERIITTHVRQREHSCKEQILLLIDFELAYMNTNHEDFIGFAN---AQNKSENANKTG 506
Query: 125 SSKKANE 131
+ + N+
Sbjct: 507 TRQLGNQ 513
>sp|Q94464|DYNA_DICDI Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2
Length = 853
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 5 ADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPP 64
A G + L PE L+K + +EPS CV+ V+ L IVS L R
Sbjct: 397 ATGPRAALFIPEISFELLVKKQVVRLEEPSAQCVEYVYDELQRIVSQLEAKE--LSRFIN 454
Query: 65 FKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH 103
K V + + L K + M+ L+ +E AF+ H
Sbjct: 455 LKARVIEVVNNLLQKHKVPTKTMIEHLIKIETAFINTSH 493
>sp|P50570|DYN2_HUMAN Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2
Length = 870
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K + KEP CVD V + L++ V T L P +
Sbjct: 397 GVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELINTVR---QCTSKLSSYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH 103
E I + + + + ++ L+D+E++++ H
Sbjct: 454 EETERIVTTYIREREGRTKDQILLLIDIEQSYINTNH 490
>sp|A6H7I5|DYN2_BOVIN Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1
Length = 866
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 7 GYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFK 66
G + L +P+ +++K + KEP CVD V + L++ V T L P +
Sbjct: 397 GVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELINTVR---QCTSKLSSYPRLR 453
Query: 67 REVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH 103
E I + + + + ++ L+D+E++++ H
Sbjct: 454 EETERIVTTYIREREGRTKDQILLLIDIEQSYINTNH 490
>sp|Q9BQG0|MBB1A_HUMAN Myb-binding protein 1A OS=Homo sapiens GN=MYBBP1A PE=1 SV=2
Length = 1328
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 37 CVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVV-----AL 91
C D+ R L +V+ ++ GL P F R V ++ PAL G+ R M + +L
Sbjct: 363 CQDDPERQLAVLVAFSSVTNQGLPVTPTFWRVVRFLSPPALQGYVAWLRAMFLQPDLDSL 422
Query: 92 VDM 94
VD
Sbjct: 423 VDF 425
>sp|Q17QB3|ASAH1_BOVIN Acid ceramidase OS=Bos taurus GN=ASAH1 PE=2 SV=3
Length = 395
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 63 PPFKR--EVAAIASPALDGFKNEARKMVVALVDMERAFVPPQHFIHLVQRRM 112
PP+KR E+ + +PAL N + +V AFVP IHLV +++
Sbjct: 57 PPYKRWHELMVVKAPALKVIVNSMKNIV-------NAFVPSGKIIHLVDQKL 101
>sp|Q8K012|FBP1L_MOUSE Formin-binding protein 1-like OS=Mus musculus GN=Fnbp1l PE=1 SV=2
Length = 605
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 39/110 (35%)
Query: 27 LELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPF---KREVAAIASPALDGFKNE 83
L L+ EP H C++E+ G R P F KR V+ I PAL+ F +
Sbjct: 353 LTLSIEPVHYCMNEI--------------KTGKPRIPSFRSLKRGVSLIMGPALEDFSH- 397
Query: 84 ARKMVVALVDMERAFVPPQHFIHLVQRRMERQRREEEVKTRSSKKANEAE 133
+PP+ QRR + Q+R +E+ K+A++ E
Sbjct: 398 ---------------LPPE------QRRKKLQQRIDELNRGLQKEADQKE 426
>sp|A6TB69|DCYD_KLEP7 D-cysteine desulfhydrase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=dcyD PE=3 SV=1
Length = 328
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 3 LEADGYQPYLISPEKGLRSL-IKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGL 59
+EA GY+PY+I P G +L G +E A E S C D V V + S +A GL
Sbjct: 146 IEAQGYRPYVI-PVGGSNALGALGYVESALEISQQCEDAVAISSVVVASGSAGTHAGL 202
>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Sus scrofa GN=OXCT1 PE=1 SV=2
Length = 520
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 101 PQHFIHLV------QRRMERQ--RREEEVKTRSSKKANEAEQAILNR 139
P+ ++H + ++R+ER R+EE+VKTRS K + + I+ R
Sbjct: 262 PKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKR 308
>sp|Q48EF0|RSMH_PSE14 Ribosomal RNA small subunit methyltransferase H OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rsmH PE=3 SV=1
Length = 313
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLC----------VDEVHRVLVD--- 47
ILL+ P L PE+G + G L++ +P+ +E+ RV +
Sbjct: 100 ILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGE 159
Query: 48 --IVSAAANATLGLGRCPPFKR-----EVAAIASPALDGFKNEARKMVVAL 91
ANA + PF+R EV +A+PA + KN A + L
Sbjct: 160 ERFAKRMANAVVARREVQPFERTADLAEVLKVANPAWEKGKNPATRAFQGL 210
>sp|Q4ZNY2|RSMH_PSEU2 Ribosomal RNA small subunit methyltransferase H OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rsmH PE=3 SV=1
Length = 313
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLC----------VDEVHRVLVD--- 47
ILL+ P L PE+G + G L++ +P+ +E+ RV +
Sbjct: 100 ILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPARGISAAEFIATAPAEEIARVFKEYGE 159
Query: 48 --IVSAAANATLGLGRCPPFKR-----EVAAIASPALDGFKNEARKMVVAL 91
ANA + PF+R EV +A+PA + KN A + L
Sbjct: 160 ERFAKRMANAVVARREVQPFERTADLAEVLKVANPAWEKGKNPATRAFQGL 210
>sp|O25687|RIMP_HELPY Ribosome maturation factor RimP OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rimP PE=3 SV=1
Length = 146
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 NATLGLGRCPPFKREVAAIASPALD--GFKNEARKMVVALVDMERAFVPPQHFIHLVQRR 111
N + L C ++V+ I SP LD F +A + V+ + +ER P+HF + +
Sbjct: 42 NGAVSLDIC----QQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEK 97
Query: 112 MERQRREEEVKTRSSKKANE 131
+E + +E K AN+
Sbjct: 98 VEVKLTNKESFQAVLKDAND 117
>sp|B2USN6|RIMP_HELPS Ribosome maturation factor RimP OS=Helicobacter pylori (strain
Shi470) GN=rimP PE=3 SV=1
Length = 146
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 NATLGLGRCPPFKREVAAIASPALD--GFKNEARKMVVALVDMERAFVPPQHFIHLVQRR 111
N + L C ++V+ I SP LD F +A + V+ + +ER P+HF + +
Sbjct: 42 NGAVSLDIC----QQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEK 97
Query: 112 MERQRREEEVKTRSSKKANE 131
+E + +E K AN+
Sbjct: 98 VEVKLTNKESFQAVLKDAND 117
>sp|B5Z6E8|RIMP_HELPG Ribosome maturation factor RimP OS=Helicobacter pylori (strain G27)
GN=rimP PE=3 SV=2
Length = 146
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 54 NATLGLGRCPPFKREVAAIASPALD--GFKNEARKMVVALVDMERAFVPPQHFIHLVQRR 111
N + L C ++V+ I SP LD F +A + V+ + +ER P+HF + +
Sbjct: 42 NGAVSLDIC----QQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEK 97
Query: 112 MERQRREEEVKTRSSKKANE 131
+E + +E K AN+
Sbjct: 98 VEVKLTNKESFQAVLKDAND 117
>sp|Q9ZM44|RIMP_HELPJ Ribosome maturation factor RimP OS=Helicobacter pylori (strain J99)
GN=rimP PE=3 SV=1
Length = 146
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 54 NATLGLGRCPPFKREVAAIASPALD--GFKNEARKMVVALVDMERAFVPPQHF 104
N + L C ++V+ I SP LD F +A + V+ + +ER P+HF
Sbjct: 42 NGAVSLDIC----QQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHF 90
>sp|Q87WX7|RSMH_PSESM Ribosomal RNA small subunit methyltransferase H OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rsmH PE=3 SV=1
Length = 313
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLC----------VDEVHRVLVD--- 47
ILL+ P L PE+G + G L++ +P+ +E+ RV +
Sbjct: 100 ILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGE 159
Query: 48 --IVSAAANATLGLGRCPPFKR-----EVAAIASPALDGFKNEARKMVVAL 91
ANA + PF+R EV +A+PA + KN A + L
Sbjct: 160 ERFAKRMANAVVQRREIQPFERTADLAEVLKVANPAWEKGKNPATRAFQGL 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,347,470
Number of Sequences: 539616
Number of extensions: 1706070
Number of successful extensions: 6244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 6212
Number of HSP's gapped (non-prelim): 71
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)