Query 047304
Match_columns 139
No_of_seqs 102 out of 290
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01031 Dynamin_M: Dynamin ce 99.9 1.1E-27 2.3E-32 197.1 9.0 105 2-108 178-284 (295)
2 KOG0446 Vacuolar sorting prote 99.9 1.7E-27 3.7E-32 216.9 10.0 107 1-108 391-499 (657)
3 COG0699 Predicted GTPases (dyn 97.8 0.00029 6.3E-09 60.7 11.1 100 3-103 265-364 (546)
4 PF05278 PEARLI-4: Arabidopsis 58.8 1.1E+02 0.0024 26.1 9.2 66 40-105 93-172 (269)
5 PF11333 DUF3135: Protein of u 52.4 29 0.00063 24.4 4.0 57 42-104 6-63 (83)
6 PF09209 DUF1956: Domain of un 47.2 38 0.00082 23.5 4.1 33 15-47 1-35 (125)
7 PF02045 CBFB_NFYA: CCAAT-bind 45.3 30 0.00064 23.2 3.0 32 97-128 4-36 (58)
8 PF10965 DUF2767: Protein of u 39.3 1.3E+02 0.0027 20.7 5.7 54 38-92 7-64 (69)
9 PHA02604 rI.-1 hypothetical pr 38.4 54 0.0012 25.1 3.9 58 35-92 42-102 (126)
10 smart00521 CBF CCAAT-Binding t 36.6 40 0.00086 22.8 2.6 34 95-128 4-37 (62)
11 PRK10698 phage shock protein P 36.3 1.9E+02 0.0042 23.4 7.0 41 61-101 3-43 (222)
12 PF15011 CK2S: Casein Kinase 2 30.5 2.6E+02 0.0056 21.7 7.7 66 23-89 10-81 (168)
13 cd05089 PTKc_Tie1 Catalytic do 30.5 95 0.0021 24.4 4.3 21 88-108 272-292 (297)
14 PF05823 Gp-FAR-1: Nematode fa 29.2 73 0.0016 24.5 3.4 44 42-94 42-88 (154)
15 PF09209 DUF1956: Domain of un 26.1 2.2E+02 0.0048 19.5 6.5 49 14-76 35-83 (125)
16 PF04012 PspA_IM30: PspA/IM30 25.2 3.3E+02 0.0073 21.2 7.5 41 62-102 3-43 (221)
17 KOG2259 Uncharacterized conser 22.2 2.9E+02 0.0062 27.1 6.4 64 24-97 467-530 (823)
18 KOG1666 V-SNARE [Intracellular 21.4 4.8E+02 0.011 21.7 7.6 69 59-128 23-95 (220)
19 PF05678 VQ: VQ motif; InterP 21.0 73 0.0016 18.5 1.5 12 100-111 11-22 (31)
20 KOG0368 Acetyl-CoA carboxylase 20.5 3.8E+02 0.0083 28.9 7.2 80 15-100 783-876 (2196)
21 PF01031 Dynamin_M: Dynamin ce 20.2 4.9E+02 0.011 21.3 11.0 67 39-108 168-237 (295)
22 PLN00160 histone H3; Provision 20.0 1.4E+02 0.0029 21.7 3.1 20 9-28 17-36 (97)
No 1
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=99.95 E-value=1.1e-27 Score=197.13 Aligned_cols=105 Identities=29% Similarity=0.484 Sum_probs=92.7
Q ss_pred cccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhH
Q 047304 2 LLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFK 81 (139)
Q Consensus 2 i~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~ 81 (139)
|+|++|+.+++|+|+.+|+.||++||++|++||++||+.||++|.+++.+|+. .++.|||.|+++|.+++.++++++.
T Consensus 178 i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L~~~i~~~v~~~l~~~~ 255 (295)
T PF01031_consen 178 IRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNLKEAIKEAVQQLLEECR 255 (295)
T ss_dssp HHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999865 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHH--hhHHH
Q 047304 82 NEARKMVVALVDMERAFVPPQH--FIHLV 108 (139)
Q Consensus 82 ~pt~~~V~~LI~~E~sYINt~h--F~~~~ 108 (139)
.+|++||.+||+||++||||+| |.+..
T Consensus 256 ~~a~~~i~~li~~E~~~i~T~~~~f~~~~ 284 (295)
T PF01031_consen 256 EPAKEMIENLIDMELSYINTQHPDFLGEL 284 (295)
T ss_dssp HHHHHHHHHHHHHHTTS--TTSTT--TTS
T ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHH
Confidence 9999999999999999999986 55544
No 2
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.94 E-value=1.7e-27 Score=216.91 Aligned_cols=107 Identities=38% Similarity=0.620 Sum_probs=101.0
Q ss_pred CcccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhh
Q 047304 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGF 80 (139)
Q Consensus 1 ~i~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~ 80 (139)
+|.|++|++|+||+|+.|||.|||+||++|++||++||++||+||++++++|..++ ++.|||.|++++.+++.++++++
T Consensus 391 ~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~ 469 (657)
T KOG0446|consen 391 LVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEG 469 (657)
T ss_pred HHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999997653 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHH--hhHHH
Q 047304 81 KNEARKMVVALVDMERAFVPPQH--FIHLV 108 (139)
Q Consensus 81 ~~pt~~~V~~LI~~E~sYINt~h--F~~~~ 108 (139)
+++|+++|.++||||.+||||+| |++..
T Consensus 470 ~~~t~~~v~~~i~~e~~yinT~h~df~~~~ 499 (657)
T KOG0446|consen 470 LDETKKAVKNLIDLEQSYLNTDHPDFRSLT 499 (657)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcChhhhhhH
Confidence 99999999999999999999976 66544
No 3
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=97.80 E-value=0.00029 Score=60.71 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=90.7
Q ss_pred ccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHH
Q 047304 3 LEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKN 82 (139)
Q Consensus 3 ~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~ 82 (139)
.+..|.+|++|.+..+|..+|..++..|..++.+|+..++++|.++.-.... .....+||.+...+...+.+..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
T COG0699 265 LASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDS 343 (546)
T ss_pred HcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999998555432 366789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChHH
Q 047304 83 EARKMVVALVDMERAFVPPQH 103 (139)
Q Consensus 83 pt~~~V~~LI~~E~sYINt~h 103 (139)
++...+...++++..|||+.|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ 364 (546)
T COG0699 344 GLESGLLAIIDIEERYINTKH 364 (546)
T ss_pred hHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999655
No 4
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.82 E-value=1.1e+02 Score=26.14 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhcccccC-----CChhHHHHHHHHHHHHHHhhHH-H--------HHHHHHHHHHHhhcCCChHHhh
Q 047304 40 EVHRVLVDIVSAAANATLGLG-----RCPPFKREVAAIASPALDGFKN-E--------ARKMVVALVDMERAFVPPQHFI 105 (139)
Q Consensus 40 lV~~EL~~Iv~~~~~~t~el~-----RfP~Lr~~I~~vv~~~L~~~~~-p--------t~~~V~~LI~~E~sYINt~hF~ 105 (139)
.|..+...|++.+..+-+++. .-+.+|....+++.+.+.+.-. | .++|+..|-|+|..=|+.++-|
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 355566666666655545444 5688999999998888877643 3 4668999999999999998755
No 5
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=52.40 E-value=29 Score=24.39 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CChHHh
Q 047304 42 HRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAF-VPPQHF 104 (139)
Q Consensus 42 ~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sY-INt~hF 104 (139)
+|||+.++.+ +.+.|..||.+.++-+++.-.+-..+--.-..+=||++++= =|+.|-
T Consensus 6 FD~L~~LA~~------dPe~fe~lr~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~ 63 (83)
T PF11333_consen 6 FDELKELAQN------DPEAFEQLRQELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHR 63 (83)
T ss_pred HHHHHHHHHh------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 6889988864 68899999999888777776666666666677888888764 555553
No 6
>PF09209 DUF1956: Domain of unknown function (DUF1956); InterPro: IPR015292 This entry represents the C-terminal domain found in the hypothetical transcriptional regulator YbiH from bacteria such as Salmonella typhimurium and Escherichia coli. YbiH is a member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. The C-terminal domains of YbiH and TetR share a multi-helical, interlocking structure.; PDB: 1T33_A.
Probab=47.22 E-value=38 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHH
Q 047304 15 PEKGLRSLIKGVLELAKEP--SHLCVDEVHRVLVD 47 (139)
Q Consensus 15 PE~aFe~LVK~qI~rL~~P--slkCVdlV~~EL~~ 47 (139)
|+..++.+++..+.++.++ +-....++..|+.+
T Consensus 1 p~~~L~~~i~~~~~~l~~~~~~~~~~~l~~RE~~~ 35 (125)
T PF09209_consen 1 PEERLRAFIRALLRRLLSDPESRWWLRLIAREMLN 35 (125)
T ss_dssp -HHHHHHHHHHHHHHTTSG-GGHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcC
Confidence 7889999999999999888 88888899998843
No 7
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.33 E-value=30 Score=23.16 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=26.0
Q ss_pred cCCChHHhhHHHHHHHHHHHHHHHHhh-hhhhH
Q 047304 97 AFVPPQHFIHLVQRRMERQRREEEVKT-RSSKK 128 (139)
Q Consensus 97 sYINt~hF~~~~~~~~~~~~~~~~~~~-~~~~~ 128 (139)
-|+|+.-|.....++..++|.+.+.+- ...+|
T Consensus 4 iyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk 36 (58)
T PF02045_consen 4 IYVNAKQYHRILRRRQARAKLEAEGKLSPKKRK 36 (58)
T ss_pred eeECHHHHHHHHHHHHHHHHHHHhCCcchhhhH
Confidence 499999999888899999999998875 44443
No 8
>PF10965 DUF2767: Protein of unknown function (DUF2767); InterPro: IPR024493 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=39.29 E-value=1.3e+02 Score=20.75 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHH----HhhHHHHHHHHHHHH
Q 047304 38 VDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPAL----DGFKNEARKMVVALV 92 (139)
Q Consensus 38 VdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L----~~~~~pt~~~V~~LI 92 (139)
-+..|+|+.++|..+.-.-.+. -++.=+..|.++....| .+|.+.+.+....-|
T Consensus 7 ~~~~Y~EmCRVVGd~Vl~L~~~-G~etk~~~Ia~~LrT~l~~~~~kr~~~~~~~me~aI 64 (69)
T PF10965_consen 7 SDRLYQEMCRVVGDAVLELADL-GHETKRIVIADVLRTELANGRSKRSELQQQAMELAI 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 3678999999999875432222 44555677777777776 234444444444333
No 9
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=38.43 E-value=54 Score=25.06 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-cCC-C-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047304 35 HLCVDEVHRVLVDIVSAAANATLG-LGR-C-PPFKREVAAIASPALDGFKNEARKMVVALV 92 (139)
Q Consensus 35 lkCVdlV~~EL~~Iv~~~~~~t~e-l~R-f-P~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI 92 (139)
++.-|.+|+||.+++..-+..--. -+| | |.|+.+=.--...+|++.++.+.+.-..++
T Consensus 42 HkA~d~~y~~~~dLiD~F~E~yiG~~Gr~Y~P~l~~~s~~d~~~~l~~~l~~a~~i~~~l~ 102 (126)
T PHA02604 42 HKAYEFFYEEMPDLIDKFAEQYIGISGRKYKPSLPSASELDTIAFLDELLQEAEEIYKELP 102 (126)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHhhcccCcCcccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999765442223 336 6 888763332455566666666666555433
No 10
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=36.61 E-value=40 Score=22.84 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=26.7
Q ss_pred hhcCCChHHhhHHHHHHHHHHHHHHHHhhhhhhH
Q 047304 95 ERAFVPPQHFIHLVQRRMERQRREEEVKTRSSKK 128 (139)
Q Consensus 95 E~sYINt~hF~~~~~~~~~~~~~~~~~~~~~~~~ 128 (139)
|--|+|+.-|.+...++..++|-|++.+-...+|
T Consensus 4 ~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rk 37 (62)
T smart00521 4 EPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK 37 (62)
T ss_pred cceeEcHHHHHHHHHHHHHHHHHHHhcchhhccC
Confidence 3459999999998889999999988876554444
No 11
>PRK10698 phage shock protein PspA; Provisional
Probab=36.26 E-value=1.9e+02 Score=23.36 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=32.2
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCh
Q 047304 61 RCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPP 101 (139)
Q Consensus 61 RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sYINt 101 (139)
=|-+|++-|..-+.++|++..+|-+-.=..+-+||-.....
T Consensus 3 if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~ 43 (222)
T PRK10698 3 IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEV 43 (222)
T ss_pred HHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 36778888888899999999999755555666788777775
No 12
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=30.53 E-value=2.6e+02 Score=21.74 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHccChHHHHHHHHH------HHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 047304 23 IKGVLELAKEPSHLCVDEVH------RVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVV 89 (139)
Q Consensus 23 VK~qI~rL~~PslkCVdlV~------~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~ 89 (139)
|+.+..+-++-.-.|..++- +-|.. ++.+-.....+..||.|++++..-....++.-+.--.+.+.
T Consensus 10 ~~~~~~~W~~~~~~~~~~l~sl~nL~eqL~a-l~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~ 81 (168)
T PF15011_consen 10 VEEQMEKWDSALSRCLPLLSSLANLAEQLQA-LQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLE 81 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555554443 33322 22221111239999999999887666665554444444443
No 13
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=30.46 E-value=95 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCCChHHhhHHH
Q 047304 88 VVALVDMERAFVPPQHFIHLV 108 (139)
Q Consensus 88 V~~LI~~E~sYINt~hF~~~~ 108 (139)
..++.....+|++..+|++++
T Consensus 272 l~~~~~~~~~~~~~~~~~~~~ 292 (297)
T cd05089 272 LSRMLEARKAYVNMALFENFT 292 (297)
T ss_pred HHHHHHhhcccccchhhhhhc
Confidence 456667778999999999876
No 14
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=29.17 E-value=73 Score=24.46 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccccCCChhHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 047304 42 HRVLVDIVSAAANATLGLGRCPPFKRE---VAAIASPALDGFKNEARKMVVALVDM 94 (139)
Q Consensus 42 ~~EL~~Iv~~~~~~t~el~RfP~Lr~~---I~~vv~~~L~~~~~pt~~~V~~LI~~ 94 (139)
++|++..+.. ++|.|.+. +.+.+..-++..-++|+.+|..+++.
T Consensus 42 ~de~i~~LK~---------ksP~L~~k~~~l~~~~k~ki~~L~peak~Fv~~li~~ 88 (154)
T PF05823_consen 42 EDEMIAALKE---------KSPSLYEKAEKLRDKLKKKIDKLSPEAKAFVKELIAK 88 (154)
T ss_dssp -TTHHHHHHH---------H-HHHHHHHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 15
>PF09209 DUF1956: Domain of unknown function (DUF1956); InterPro: IPR015292 This entry represents the C-terminal domain found in the hypothetical transcriptional regulator YbiH from bacteria such as Salmonella typhimurium and Escherichia coli. YbiH is a member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. The C-terminal domains of YbiH and TetR share a multi-helical, interlocking structure.; PDB: 1T33_A.
Probab=26.12 E-value=2.2e+02 Score=19.52 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHH
Q 047304 14 SPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPA 76 (139)
Q Consensus 14 vPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~ 76 (139)
-|..+|+.++++ .+.-+++.|.+|+..+.. ....=+.++-.+..++...
T Consensus 35 ~Pt~~~~~i~~~-----------~~~P~~~~l~~ll~~~~g---~~~~~~~~~~~~~si~g~~ 83 (125)
T PF09209_consen 35 NPTPAFDRIVEE-----------LIRPKHEALARLLAEILG---EPADDPEVRLCAFSIVGQC 83 (125)
T ss_dssp S--HHHHHHHHH-----------THHHHHHHHHHHHHHHHT-----TTSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-----------HhhhHHHHHHHHHHHHhC---cCCChHHHHHHHHHHHHHH
Confidence 356666666666 455566777788877643 3345566666666655554
No 16
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.15 E-value=3.3e+02 Score=21.23 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChH
Q 047304 62 CPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQ 102 (139)
Q Consensus 62 fP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sYINt~ 102 (139)
|-+|++-|..-+..++++..+|-.-+=..+=+||..+....
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~ 43 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKAR 43 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 55677778888888888888887544455667888777654
No 17
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.18 E-value=2.9e+02 Score=27.08 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 047304 24 KGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVVALVDMERA 97 (139)
Q Consensus 24 K~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~s 97 (139)
+.-+.+.+=|-+.|++.+..+|.+ .|++||+=|++|..++...=.+...--..++..+.+...+
T Consensus 467 ~elL~~~~~~d~~~i~m~v~~lL~----------~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~kh~~ 530 (823)
T KOG2259|consen 467 RELLKNARVSDLECIDMCVAHLLK----------NLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGRFLEKHTS 530 (823)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHH----------HhhhCCCCcHHHHHHHHHHhccChhhHHHHHHHHHHhccc
Confidence 334556677888888888888866 2789999999999988877666665555666666654433
No 18
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=4.8e+02 Score=21.72 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=41.2
Q ss_pred cCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH---hhHHHHHHHHHHHH-HHHHhhhhhhH
Q 047304 59 LGRCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPPQH---FIHLVQRRMERQRR-EEEVKTRSSKK 128 (139)
Q Consensus 59 l~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sYINt~h---F~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (139)
++|-|.+...=..-...-+++..+++++++ +=+|.|..|+++++ |-+-.+.+.+.+++ +.+++..-+++
T Consensus 23 ~~~~~~~~~~ekk~~l~~i~~~leEa~ell-~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~ 95 (220)
T KOG1666|consen 23 IGRALSLPGSEKKQLLSEIDSKLEEANELL-DQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRN 95 (220)
T ss_pred HHHHhcCCchHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444444442222223344667778888887 45699999999986 33444566666665 55665544443
No 19
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=21.03 E-value=73 Score=18.49 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=9.1
Q ss_pred ChHHhhHHHHHH
Q 047304 100 PPQHFIHLVQRR 111 (139)
Q Consensus 100 Nt~hF~~~~~~~ 111 (139)
+++.||.++|++
T Consensus 11 d~~~Fr~lVQ~L 22 (31)
T PF05678_consen 11 DPSNFRALVQRL 22 (31)
T ss_pred CHHHHHHHHHHh
Confidence 466899999764
No 20
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=20.53 E-value=3.8e+02 Score=28.95 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhccccc-------------CCC-hhHHHHHHHHHHHHHHhh
Q 047304 15 PEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGL-------------GRC-PPFKREVAAIASPALDGF 80 (139)
Q Consensus 15 PE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el-------------~Rf-P~Lr~~I~~vv~~~L~~~ 80 (139)
|+.-|..++-+.-.-|.+=+. =++.++++|+++++. ++| .|. |+|.+.+...+..+....
T Consensus 783 ~~~k~~~~l~~l~nIL~Gy~~-~l~~~~~~li~~Lr~-----p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~ 856 (2196)
T KOG0368|consen 783 PHQKFHSLLNRLENILAGYDP-KLDETVQELIKVLRD-----PELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRI 856 (2196)
T ss_pred hHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHhcC-----CCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhc
Confidence 345577777777666666555 567777777777743 333 455 678888888877776666
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 047304 81 KNEARKMVVALVDMERAFVP 100 (139)
Q Consensus 81 ~~pt~~~V~~LI~~E~sYIN 100 (139)
.+---+++..++++-++-.|
T Consensus 857 t~FPakql~~il~~~~~~~~ 876 (2196)
T KOG0368|consen 857 TQFPAKQLAKILDAHLATLN 876 (2196)
T ss_pred ccCcHHHHHHHHHHHhhccc
Confidence 66666778888888775443
No 21
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=20.16 E-value=4.9e+02 Score=21.28 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCh---HHhhHHH
Q 047304 39 DEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVVALVDMERAFVPP---QHFIHLV 108 (139)
Q Consensus 39 dlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sYINt---~hF~~~~ 108 (139)
++-.+++..+++++- ..++-=|+.- ..+...+...++.|..|+.+.|...-+.=..-++. .+|..++
T Consensus 168 ~~~~~eI~~~i~~~~--G~elp~f~p~-~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp 237 (295)
T PF01031_consen 168 DLSDEEIRTAIRNSR--GRELPGFVPE-SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFP 237 (295)
T ss_dssp HHHHHHHHHHHHH----S-SSS-SCCH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSH
T ss_pred chhHHHHHHHHHhhc--ccccccchhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCch
Confidence 355777778777753 3677777554 78889999999999999999886544332222221 2666555
No 22
>PLN00160 histone H3; Provisional
Probab=20.05 E-value=1.4e+02 Score=21.75 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=15.5
Q ss_pred CCcccCchHHHHHHHHHHHH
Q 047304 9 QPYLISPEKGLRSLIKGVLE 28 (139)
Q Consensus 9 rp~LFvPE~aFe~LVK~qI~ 28 (139)
.+.|++|-..|..||+.-..
T Consensus 17 st~lLI~k~pF~RLVREI~~ 36 (97)
T PLN00160 17 STDLLIRRLPFARLVREIQM 36 (97)
T ss_pred chhhhhccccHHHHHHHHHH
Confidence 35688999999999986433
Done!