Query 047304
Match_columns 139
No_of_seqs 102 out of 290
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.1E-33 3.7E-38 259.6 8.2 111 1-115 411-523 (772)
2 3ljb_A Interferon-induced GTP- 99.9 1.5E-23 5.3E-28 172.9 10.4 98 3-103 73-170 (271)
3 3szr_A Interferon-induced GTP- 99.9 1.1E-21 3.9E-26 174.2 10.5 100 2-103 412-511 (608)
4 3szr_A Interferon-induced GTP- 71.3 42 0.0014 29.4 11.0 76 37-116 400-478 (608)
5 3ljb_A Interferon-induced GTP- 59.7 67 0.0023 25.8 10.5 91 23-117 46-139 (271)
6 4g92_A HAPB protein; transcrip 36.0 28 0.00096 22.7 2.8 27 97-123 5-31 (64)
7 4e97_A Lysozyme; hydrolase, al 27.3 1.8E+02 0.0061 21.4 6.4 52 39-92 116-173 (187)
8 1hlm_A Hemoglobin (cyano Met); 26.7 1.6E+02 0.0055 20.4 6.0 90 20-116 18-127 (159)
9 2a7o_A Huntingtin interacting 22.1 84 0.0029 22.5 3.5 42 64-114 21-63 (112)
10 3hiu_A Uncharacterized protein 21.7 89 0.0031 23.3 3.7 26 59-92 32-57 (166)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.1e-33 Score=259.58 Aligned_cols=111 Identities=23% Similarity=0.401 Sum_probs=95.0
Q ss_pred CcccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhh
Q 047304 1 ILLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGF 80 (139)
Q Consensus 1 ~i~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~ 80 (139)
+|+|++|++|+||+|+.|||.|||+||++|++||++|||+||+||.+++++| ++++.|||+|+++|.+++.++|+++
T Consensus 411 ~i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~---~~~l~RfP~Lr~ei~~iv~~~Lre~ 487 (772)
T 3zvr_A 411 AIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKC---SEKLQQYPRLREEMERIVTTHIRER 487 (772)
T ss_dssp HHHHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH---GGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999998 3689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHH--hhHHHHHHHHHH
Q 047304 81 KNEARKMVVALVDMERAFVPPQH--FIHLVQRRMERQ 115 (139)
Q Consensus 81 ~~pt~~~V~~LI~~E~sYINt~h--F~~~~~~~~~~~ 115 (139)
+.||++||.+|||||++||||+| |.|+. +++++.
T Consensus 488 ~~~t~~~V~~LId~E~ayintnHpdf~~~~-~~~~~~ 523 (772)
T 3zvr_A 488 EGRTKEQVMLLIDIELAYMNTNHEDFIGFA-NAQQRS 523 (772)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTCTTCCCC--------
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChhhhchH-HHHHHH
Confidence 99999999999999999999999 99877 555443
No 2
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=172.91 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=83.6
Q ss_pred ccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHH
Q 047304 3 LEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKN 82 (139)
Q Consensus 3 ~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~ 82 (139)
++..|...++|+|..+||.|||+||++|++||++|++.||++|.+++.+++. +.+.|||+|++++.+++.+.++++..
T Consensus 73 ~~~rGrELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~ 150 (271)
T 3ljb_A 73 NQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQER 150 (271)
T ss_dssp C---------CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999875 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChHH
Q 047304 83 EARKMVVALVDMERAFVPPQH 103 (139)
Q Consensus 83 pt~~~V~~LI~~E~sYINt~h 103 (139)
||++||.++++||+ ||.|.|
T Consensus 151 ~Ae~~I~~~~~mE~-~vytqD 170 (271)
T 3ljb_A 151 EGEKLIRLHFQMEQ-IVYCQD 170 (271)
T ss_dssp HHHHHHHHHHHHHT-SCC---
T ss_pred HHHHHHHHHHHHhc-ccccCC
Confidence 99999999999999 788876
No 3
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.86 E-value=1.1e-21 Score=174.17 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=93.9
Q ss_pred cccCCCCCCcccCchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhH
Q 047304 2 LLEADGYQPYLISPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFK 81 (139)
Q Consensus 2 i~Na~G~rp~LFvPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~ 81 (139)
++|+.|..+++|+|+.+||.|||+||++|++|+++||+.||+++.+++.+++. ..+.|||+|++++.+++.++++++.
T Consensus 412 ~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~ 489 (608)
T 3szr_A 412 ENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQE 489 (608)
T ss_dssp HHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999998754 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHH
Q 047304 82 NEARKMVVALVDMERAFVPPQH 103 (139)
Q Consensus 82 ~pt~~~V~~LI~~E~sYINt~h 103 (139)
.||++||.++|+||+.|++-++
T Consensus 490 ~~a~~~i~~li~mE~~~~~~d~ 511 (608)
T 3szr_A 490 REGEKLIRLHFQMEQIVYGAFQ 511 (608)
T ss_dssp HHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHhhccccCCc
Confidence 9999999999999999987654
No 4
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=71.34 E-value=42 Score=29.35 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhhcCCChHHhhHHHHHHHH
Q 047304 37 CVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVVALVD---MERAFVPPQHFIHLVQRRME 113 (139)
Q Consensus 37 CVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~---~E~sYINt~hF~~~~~~~~~ 113 (139)
.-+.+.+|+....+++ ...++.-|.. -.....++...++.|.+|+.++|....+ .+..-+-..||..++ .+.+
T Consensus 400 ~~~~~~~~i~~~~~~~--~g~~~~~f~~-~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp-~L~~ 475 (608)
T 3szr_A 400 GHKILSRKIQKFENQA--AAAELPGFVN-YRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFF-NLHR 475 (608)
T ss_dssp HHHHHHHHHHHHHHHC--CSCSSSCSSC-THHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHH
T ss_pred cchhHHHHHHHHHHHc--cCCCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH
Confidence 4456677777766663 3467777765 4678889999999999999999854443 333333456888777 4544
Q ss_pred HHH
Q 047304 114 RQR 116 (139)
Q Consensus 114 ~~~ 116 (139)
..+
T Consensus 476 ~~~ 478 (608)
T 3szr_A 476 TAK 478 (608)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=59.70 E-value=67 Score=25.82 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh---hcCC
Q 047304 23 IKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPALDGFKNEARKMVVALVDME---RAFV 99 (139)
Q Consensus 23 VK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E---~sYI 99 (139)
-.++...|..-+.+-.+.+++|..+-.++- .+.++--|++-+ ....+|...++.+.+|+.+++...-++= ..-|
T Consensus 46 F~~w~~~l~~~~~~~~~~i~~ev~~~e~~~--rGrELPgFv~y~-aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i 122 (271)
T 3ljb_A 46 FHKWSTIIENNFQEGHKILSRKIQKFENQY--RGRELPGFVNYR-TFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDV 122 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CTTHH-HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHc--cCcccCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666667778887777553 347888887754 6788999999999999999987774442 2223
Q ss_pred ChHHhhHHHHHHHHHHHH
Q 047304 100 PPQHFIHLVQRRMERQRR 117 (139)
Q Consensus 100 Nt~hF~~~~~~~~~~~~~ 117 (139)
-..||.+++ .+.+.++.
T Consensus 123 ~~~~F~rFp-nL~~~i~~ 139 (271)
T 3ljb_A 123 SIKNFEEFF-NLHRTAKS 139 (271)
T ss_dssp HHHHHTTSH-HHHHHHHH
T ss_pred HHHHHhhhH-HHHHHHHH
Confidence 346899888 56666554
No 6
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=36.01 E-value=28 Score=22.73 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=23.6
Q ss_pred cCCChHHhhHHHHHHHHHHHHHHHHhh
Q 047304 97 AFVPPQHFIHLVQRRMERQRREEEVKT 123 (139)
Q Consensus 97 sYINt~hF~~~~~~~~~~~~~~~~~~~ 123 (139)
-|+|+.-|.+...++..++|.+++.+-
T Consensus 5 iyVNaKQy~~IlrRR~~Rakle~~~kl 31 (64)
T 4g92_A 5 LYVNAKQFHRILKRRVARQKLEEQLRL 31 (64)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHHTTC
T ss_pred eeECHHHHHHHHHHHHHHHHHHHhCCc
Confidence 599999999888899999999988764
No 7
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=27.29 E-value=1.8e+02 Score=21.35 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCCChhHHHHHH-----HHHHHHHH-hhHHHHHHHHHHHH
Q 047304 39 DEVHRVLVDIVSAAANATLGLGRCPPFKREVA-----AIASPALD-GFKNEARKMVVALV 92 (139)
Q Consensus 39 dlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~-----~vv~~~L~-~~~~pt~~~V~~LI 92 (139)
+.+++-|++++=++.. ..+.+|+++..+|. .++.++++ .|-..|..=+..|+
T Consensus 116 ~~~~~ALvsm~FNlG~--~~l~kf~~ml~~ln~gd~~~Aa~Em~dSrW~kQt~~Ra~rl~ 173 (187)
T 4e97_A 116 AVRRCAAINHVFQMGV--TGVAGFTNVLRMLQQKRWDEAAVNLAKSRWYNQCPDRAKRVI 173 (187)
T ss_dssp HHHHHHHHHHHHHHCH--HHHHTCHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHH
T ss_pred HHHHHHheeeeeccCC--cchhhCHHHHHHHHcCCHHHHHHHHHhchhhccCcHHHHHHH
Confidence 4456667777766543 56788888877774 35566654 45554444444444
No 8
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=26.66 E-value=1.6e+02 Score=20.39 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCC-hh--------------HHH---HHHHHHHHHHHhhH
Q 047304 20 RSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRC-PP--------------FKR---EVAAIASPALDGFK 81 (139)
Q Consensus 20 e~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~Rf-P~--------------Lr~---~I~~vv~~~L~~~~ 81 (139)
..+|+..-..+++-...+...+|.-|... .|++.+| |. ++. ++...+..++...-
T Consensus 18 ~~~i~~sw~~v~~~~~~~g~~~y~rlf~~-------~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 90 (159)
T 1hlm_A 18 KDLIRSTWDQLMTHRTGFVADVFIRIFHN-------DPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMD 90 (159)
T ss_dssp HHHHHHHHHHHTSCTHHHHHHHHHHHTTT-------CSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHH-------CHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 35789999999877777777777666541 2555543 44 333 45555555444322
Q ss_pred -HHHHHHHHHHHHHhhcC-CChHHhhHHHHHHHHHHH
Q 047304 82 -NEARKMVVALVDMERAF-VPPQHFIHLVQRRMERQR 116 (139)
Q Consensus 82 -~pt~~~V~~LI~~E~sY-INt~hF~~~~~~~~~~~~ 116 (139)
..-...+..|-.....| |++.||.-+....+.-++
T Consensus 91 ~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~ 127 (159)
T 1hlm_A 91 TEVLPELLATLTRTHDKNHVGKKNYDLFGKVLMEAIK 127 (159)
T ss_dssp STTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 23456667777777664 888999977755555443
No 9
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=22.05 E-value=84 Score=22.51 Aligned_cols=42 Identities=17% Similarity=0.401 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-hHHhhHHHHHHHHH
Q 047304 64 PFKREVAAIASPALDGFKNEARKMVVALVDMERAFVP-PQHFIHLVQRRMER 114 (139)
Q Consensus 64 ~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI~~E~sYIN-t~hF~~~~~~~~~~ 114 (139)
.||.+|...|.++|+-++.| ++-.+.|+ +.+|-.|+..+...
T Consensus 21 ~Fr~eis~~Vv~~L~pYRk~---------~Ck~GRITs~EDFK~LaRKLTh~ 63 (112)
T 2a7o_A 21 VFRKEMSQFIVQCLNPYRKP---------DCKVGRITTTEDFKHLARKLTHG 63 (112)
T ss_dssp HHHHHHHHHHHHHHTTTSST---------TCSSSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccC---------ccccCccccHHHHHHHHHHHHHH
Confidence 68899999999999999988 45567776 55677666444333
No 10
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=21.69 E-value=89 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=18.1
Q ss_pred cCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047304 59 LGRCPPFKREVAAIASPALDGFKNEARKMVVALV 92 (139)
Q Consensus 59 l~RfP~Lr~~I~~vv~~~L~~~~~pt~~~V~~LI 92 (139)
...||.|+.++.. .+..|+.+|..|=
T Consensus 32 ~a~~peLk~a~e~--------Hl~eT~~qi~rLe 57 (166)
T 3hiu_A 32 IEHYPELKRRIEQ--------HVEETQQQSAGVQ 57 (166)
T ss_dssp CSSCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 5679999887654 5666777776653
Done!