Query 047304
Match_columns 139
No_of_seqs 102 out of 290
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 17:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047304.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047304hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 48.3 3.2 0.00024 24.8 1.2 12 60-71 33-44 (57)
2 d1swya_ d.2.1.3 (A:) Phage T4 47.2 35 0.0026 22.7 7.1 56 13-70 57-122 (164)
3 d1oe8a1 a.45.1.1 (A:85-207) Cl 43.1 19 0.0014 22.6 4.8 52 30-82 67-120 (123)
4 d1ls1a1 a.24.13.1 (A:1-88) Sig 35.5 12 0.00089 23.7 2.7 19 31-49 68-86 (88)
5 d1tzyc_ a.22.1.1 (C:) Histone 32.6 17 0.0013 23.4 3.1 19 9-27 17-35 (95)
6 d1j8yf1 a.24.13.1 (F:3-86) Sig 30.8 14 0.001 23.1 2.3 18 32-49 65-82 (84)
7 d2r7da1 b.40.4.5 (A:404-461) R 24.1 1.9 0.00014 26.0 -2.8 19 3-21 9-27 (58)
8 d1wgwa_ a.24.13.1 (A:) Signal 19.8 24 0.0017 22.6 1.9 18 33-50 75-92 (99)
9 d1t33a2 a.121.1.1 (A:89-220) P 16.5 1.4E+02 0.01 19.4 6.7 50 14-77 40-89 (132)
10 d1k28a3 d.2.1.3 (A:130-345) Ta 16.3 1.7E+02 0.012 20.4 7.8 56 13-70 106-171 (216)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.31 E-value=3.2 Score=24.81 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.5
Q ss_pred CCChhHHHHHHH
Q 047304 60 GRCPPFKREVAA 71 (139)
Q Consensus 60 ~RfP~Lr~~I~~ 71 (139)
.|||.||+.|..
T Consensus 33 ~ryp~lre~im~ 44 (57)
T d1x3zb1 33 ARYPQLREHIMA 44 (57)
T ss_dssp TTCHHHHHHHHT
T ss_pred HhhHHHHHHHHh
Confidence 599999999874
No 2
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=47.17 E-value=35 Score=22.69 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=32.0
Q ss_pred cCchHHHHHHHHHHHHHccChHHHHH----------HHHHHHHHHHHHHHhhcccccCCChhHHHHHH
Q 047304 13 ISPEKGLRSLIKGVLELAKEPSHLCV----------DEVHRVLVDIVSAAANATLGLGRCPPFKREVA 70 (139)
Q Consensus 13 FvPE~aFe~LVK~qI~rL~~PslkCV----------dlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~ 70 (139)
-+++.--+.|.++-|.....-..+|+ +.+++-|+.++=++.. ..+.+||++...|.
T Consensus 57 ~it~~~a~~ll~~dl~~~~~~~~~~~~~~~~~~~l~~~~~~alvs~~fNlG~--~~~~~f~~~~~~l~ 122 (164)
T d1swya_ 57 VITKDEAEKLFNQDVAAAVRGILRNAKLKPVYDSLDAVRECALINMVFQMGE--TGVAGFTNSLRMLQ 122 (164)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCH--HHHHTCHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHeechhhcCC--chhccChHHHHHHH
Confidence 33444444555544544444333332 4566677777777633 46778888888774
No 3
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=43.11 E-value=19 Score=22.61 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=37.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHH--HHHHhhHH
Q 047304 30 AKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIAS--PALDGFKN 82 (139)
Q Consensus 30 L~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~--~~L~~~~~ 82 (139)
|-+.++-.+|++.-+++..+..+.. ..-+..||+|+.-...+.. .-|.+|+.
T Consensus 67 ~vG~~lT~aD~~~~~~l~~~~~~~~-~~~~~~~P~L~~~~~~v~~~~P~I~~yl~ 120 (123)
T d1oe8a1 67 AVGDKVTLADLVLIAVIDHVTDLDK-EFLTGKYPEIHKHRENLLASSPRLAKYLS 120 (123)
T ss_dssp SSTTSCCHHHHHHHHHHHHHHHHCT-TTTTTSCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHHHHHHHHhCc-ccccccCcHHHHHHHHHHHcChHHHHHHH
Confidence 5567889999999999988876532 1234789999998877644 35666653
No 4
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=35.55 E-value=12 Score=23.70 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.5
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 047304 31 KEPSHLCVDEVHRVLVDIV 49 (139)
Q Consensus 31 ~~PslkCVdlV~~EL~~Iv 49 (139)
-.|.-+-+..||+||+++.
T Consensus 68 ~~p~~~iikiV~dELv~lL 86 (88)
T d1ls1a1 68 LTPAEVILATVYEALKEAL 86 (88)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4688899999999999975
No 5
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=32.63 E-value=17 Score=23.42 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.7
Q ss_pred CCcccCchHHHHHHHHHHH
Q 047304 9 QPYLISPEKGLRSLIKGVL 27 (139)
Q Consensus 9 rp~LFvPE~aFe~LVK~qI 27 (139)
.+.|++|-..|..||+.-.
T Consensus 17 st~lLIpk~pF~RLVRei~ 35 (95)
T d1tzyc_ 17 STELLIRKLPFQRLVREIA 35 (95)
T ss_dssp CCSCCSCHHHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHH
Confidence 4678999999999999833
No 6
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=30.75 E-value=14 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 047304 32 EPSHLCVDEVHRVLVDIV 49 (139)
Q Consensus 32 ~PslkCVdlV~~EL~~Iv 49 (139)
.|.-.-+..||+||++++
T Consensus 65 ~~~~~i~kiV~~eLv~lL 82 (84)
T d1j8yf1 65 ERREWFIKIVYDELSNLF 82 (84)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 477889999999999975
No 7
>d2r7da1 b.40.4.5 (A:404-461) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]}
Probab=24.06 E-value=1.9 Score=25.99 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.6
Q ss_pred ccCCCCCCcccCchHHHHH
Q 047304 3 LEADGYQPYLISPEKGLRS 21 (139)
Q Consensus 3 ~Na~G~rp~LFvPE~aFe~ 21 (139)
-+-.|++..|..||.||+.
T Consensus 9 vdrrg~qatllipelafdl 27 (58)
T d2r7da1 9 VDRRGAQATLLIPDLAFDV 27 (58)
T ss_dssp EEEETTEEEEEEGGGTEEE
T ss_pred EeccCCceEEEcchheecc
Confidence 3456999999999999863
No 8
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.79 E-value=24 Score=22.60 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047304 33 PSHLCVDEVHRVLVDIVS 50 (139)
Q Consensus 33 PslkCVdlV~~EL~~Iv~ 50 (139)
|.-.-+..||+||++|..
T Consensus 75 ~~q~i~kiV~dELv~ll~ 92 (99)
T d1wgwa_ 75 KRKMIQHAVFKELVKVKV 92 (99)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 567788999999999764
No 9
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=16.45 E-value=1.4e+02 Score=19.43 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHHHHHH
Q 047304 14 SPEKGLRSLIKGVLELAKEPSHLCVDEVHRVLVDIVSAAANATLGLGRCPPFKREVAAIASPAL 77 (139)
Q Consensus 14 vPE~aFe~LVK~qI~rL~~PslkCVdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~~vv~~~L 77 (139)
-|..+|+.++++ .+.=.++.|..++....+ .-.-=|.++.....++...|
T Consensus 40 ~PT~a~~~l~~~-----------~i~P~~~~l~~ll~~~~G---~~~~d~~~~~~~~sivGq~l 89 (132)
T d1t33a2 40 SPTSAYQLVHEQ-----------VIDPLHTHLTRLVAAYTG---CDANDTRMILHTHALLGEVL 89 (132)
T ss_dssp SCCHHHHHHHHH-----------THHHHHHHHHHHHHHHHT---CCTTSHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-----------HhhhHHHHHHHHHHHHHC---cCCCCHHHHHHHHHHHHHHH
Confidence 477777777777 445567778888877643 22233555555555555443
No 10
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=16.29 E-value=1.7e+02 Score=20.43 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=35.5
Q ss_pred cCchHHHHHHHHHHHHHccChHHHH----------HHHHHHHHHHHHHHHhhcccccCCChhHHHHHH
Q 047304 13 ISPEKGLRSLIKGVLELAKEPSHLC----------VDEVHRVLVDIVSAAANATLGLGRCPPFKREVA 70 (139)
Q Consensus 13 FvPE~aFe~LVK~qI~rL~~PslkC----------VdlV~~EL~~Iv~~~~~~t~el~RfP~Lr~~I~ 70 (139)
-+++.--+.|..+-|...+....+| =+.+++-|++++=++.. ..+..|+++..+|.
T Consensus 106 ~it~~ea~~Ll~~Dl~~a~~~~~~~~~~~~~~~~L~~~~q~ALvsm~FNlG~--~~l~kF~~~~~al~ 171 (216)
T d1k28a3 106 SITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGV--GGVAKFNTMLTAML 171 (216)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHSCHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCHHHHHHHhcceeccCC--chhcccHHHHHHHH
Confidence 3555555556555555554333322 24577888888877654 57888999888874
Done!