BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047305
         (767 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 38.1 bits (87), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 110 KVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL---------FLLALAVYYEMV 160
           K GD  +AL  + + +    Q   Y YN +L +    +                ++ +M+
Sbjct: 38  KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97

Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
               +PN  TF+            E+A  M+ +M   GI P   +Y   + G C+   AD
Sbjct: 98  VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157

Query: 221 EAYRLFLKM 229
           +AY +   M
Sbjct: 158 KAYEVDAHM 166



 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 17/127 (13%)

Query: 319 SEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLL------DQARSLQVEIWKR 372
           S+ G V +A++L  + R  G+    Y YN L+   C L         +   S   +I+K+
Sbjct: 37  SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQ 95

Query: 373 ----DSLPNTHTFTILICGMCRNGMVDDAQKLFN---KMEKAGCFPSVGMFNALIDGLCK 425
                 +PN  TFT    G       DD +  F+   +M+  G  P +  +   + G C+
Sbjct: 96  MIVDKVVPNEATFT---NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152

Query: 426 AGELEKA 432
            G+ +KA
Sbjct: 153 KGDADKA 159


>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
          Length = 723

 Score = 32.7 bits (73), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 392 GMVDDAQKLFNKMEKAGCFPSVGMFNA-LIDGLCKAGELEKANLLFYKMEIGKNPTLFLR 450
           G +++A +L+ K  +   FP     ++ L   L + G+L++A L+ YK  I  +PT    
Sbjct: 23  GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA-LMHYKEAIRISPTFADA 79

Query: 451 LSQGGNRVHDKASLQTMVEQYCTAGLIHKAY-----KILMQLAESGNLPDIIT 498
            S  GN + +   +Q  ++ Y  A  I+ A+      +     +SGN+P+ I 
Sbjct: 80  YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 31.6 bits (70), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 82  YWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFD 128
           Y+Q   EL   N S     ++ L + YYK GD +KA+E + K  E D
Sbjct: 31  YYQKALELDPNNASA----WYNLGNAYYKQGDYQKAIEYYQKALELD 73


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 30.4 bits (67), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 82  YWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLN 141
           Y+Q   EL   N    ++ ++ L + YYK GD ++A+E + K  E D       YN  L 
Sbjct: 31  YYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN--LG 84

Query: 142 IAFRKQ 147
            A+ KQ
Sbjct: 85  NAYYKQ 90


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 110 KVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL---------FLLALAVYYEMV 160
           K GD  +AL  + + +    Q   Y YN +L +    +                ++ + +
Sbjct: 38  KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97

Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
               +PN  TF+            E A   + +    GI P   +Y   + G C+   AD
Sbjct: 98  VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDAD 157

Query: 221 EAYRL 225
           +AY +
Sbjct: 158 KAYEV 162


>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
           Sulfhydrylase
 pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
           Sulfhydrylase Complexed With 4-Methylvalerate
 pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
           Sulfhydrylase Complexed With 3-Hydroxylactate
 pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
           Sulfhydrylase Complexed With 4-Acetylbutyric Acid
 pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
           Sulfhydrylase Complexed With 4-Acetylbutyric Acid
          Length = 304

 Score = 29.6 bits (65), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 304 IEPDVVLYGVMIRGLSEAGKVKD--AMKLLSDMRERGIV 340
           +EPD+    V + GL+  G +KD  A  ++ D  ERGI+
Sbjct: 19  VEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGIL 57


>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
 pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
           Cereus. Northeast Structural Genomics Consortium Target
           Id Bcr251
          Length = 353

 Score = 28.9 bits (63), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 505 GFCKVGNINGALKLFKELQLKGLRPD-----SVTYGTLINGLQRVDREEDAFRIFGQMPQ 559
           G  K  N NG    + E Q+K    D        Y T++NG  ++ ++E+A      +  
Sbjct: 278 GIAKYRNANGD---WIEKQIKTPLGDYGRFYDAAYDTIVNGAPKLVKDEEAVTNIEILEN 334

Query: 560 NGCTPSPAVYK 570
               PSP+VYK
Sbjct: 335 GFAAPSPSVYK 345


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,235,146
Number of Sequences: 62578
Number of extensions: 927248
Number of successful extensions: 2021
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1998
Number of HSP's gapped (non-prelim): 30
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)