Query 047305
Match_columns 767
No_of_seqs 645 out of 4809
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 09:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.4E-75 5.2E-80 658.6 64.1 666 39-743 97-774 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.6E-73 1E-77 640.1 74.5 669 33-743 56-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1E-65 2.2E-70 565.6 69.9 546 96-743 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 4E-69 555.7 68.0 516 61-595 368-909 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.3E-60 9.3E-65 521.6 52.9 478 96-671 85-564 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.7E-59 1.4E-63 512.1 55.3 516 130-743 84-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-41 5.1E-46 394.3 85.0 668 34-736 199-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.1E-41 2E-45 389.4 86.3 664 36-734 235-898 (899)
9 PRK11447 cellulose synthase su 100.0 4.1E-31 8.9E-36 305.9 78.0 650 70-742 35-747 (1157)
10 PRK11447 cellulose synthase su 100.0 2.8E-31 6.2E-36 307.3 74.3 632 36-698 36-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 6.5E-27 1.4E-31 257.4 70.8 646 42-734 58-738 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.1E-25 2.4E-30 247.8 70.2 617 32-706 82-745 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 7.2E-27 1.6E-31 226.3 37.6 447 241-716 51-501 (966)
14 KOG2002 TPR-containing nuclear 100.0 7.6E-23 1.6E-27 209.6 62.9 614 75-707 106-751 (1018)
15 KOG2002 TPR-containing nuclear 100.0 1.5E-22 3.2E-27 207.5 59.9 624 76-739 143-801 (1018)
16 KOG4626 O-linked N-acetylgluco 100.0 1.2E-25 2.5E-30 218.0 34.2 452 276-758 51-508 (966)
17 KOG2076 RNA polymerase III tra 99.9 7.8E-19 1.7E-23 179.4 58.6 658 68-733 144-892 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-20 3.3E-25 204.8 49.1 432 240-700 129-572 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 2E-20 4.2E-25 204.0 49.6 433 204-665 128-572 (615)
20 PRK15174 Vi polysaccharide exp 99.9 1.7E-20 3.8E-25 203.0 43.2 328 350-698 49-380 (656)
21 PRK15174 Vi polysaccharide exp 99.9 1.4E-20 2.9E-25 203.9 39.8 333 381-736 45-381 (656)
22 PRK10049 pgaA outer membrane p 99.9 1.4E-19 3E-24 200.6 48.1 416 242-712 19-467 (765)
23 PRK11788 tetratricopeptide rep 99.9 4E-21 8.6E-26 199.3 33.8 320 420-760 42-371 (389)
24 KOG0495 HAT repeat protein [RN 99.9 3.8E-16 8.2E-21 153.6 62.6 605 78-735 266-879 (913)
25 PRK10049 pgaA outer membrane p 99.9 8.5E-19 1.8E-23 194.4 48.8 416 272-745 14-463 (765)
26 KOG0495 HAT repeat protein [RN 99.9 8E-16 1.7E-20 151.4 61.7 611 43-705 266-884 (913)
27 KOG2076 RNA polymerase III tra 99.9 3.8E-16 8.3E-21 160.0 60.5 617 107-736 148-849 (895)
28 PRK14574 hmsH outer membrane p 99.9 1.8E-17 3.9E-22 179.5 51.4 448 178-670 44-518 (822)
29 PRK11788 tetratricopeptide rep 99.9 4.9E-19 1.1E-23 183.7 35.7 301 107-414 44-354 (389)
30 PRK14574 hmsH outer membrane p 99.9 3.6E-17 7.8E-22 177.2 50.6 450 212-710 43-522 (822)
31 KOG2003 TPR repeat-containing 99.8 2E-15 4.3E-20 142.1 39.1 489 168-693 201-716 (840)
32 KOG4422 Uncharacterized conser 99.8 9.4E-15 2E-19 136.8 40.8 465 73-587 125-617 (625)
33 KOG2003 TPR repeat-containing 99.8 1.7E-16 3.7E-21 149.2 29.6 483 97-615 200-709 (840)
34 KOG4422 Uncharacterized conser 99.8 4.7E-14 1E-18 132.2 44.9 445 100-596 118-591 (625)
35 PF13429 TPR_15: Tetratricopep 99.8 2.4E-18 5.2E-23 168.2 12.9 262 418-698 13-276 (280)
36 KOG1173 Anaphase-promoting com 99.8 2.1E-14 4.6E-19 139.7 38.8 284 412-716 243-533 (611)
37 KOG1915 Cell cycle control pro 99.8 6.5E-13 1.4E-17 126.3 46.1 479 167-698 72-584 (677)
38 KOG0547 Translocase of outer m 99.7 1.7E-14 3.8E-19 137.5 34.6 421 244-698 121-565 (606)
39 KOG1126 DNA-binding cell divis 99.7 3.6E-16 7.8E-21 155.3 23.0 291 427-742 333-626 (638)
40 KOG1155 Anaphase-promoting com 99.7 8.9E-14 1.9E-18 131.9 36.3 363 340-732 161-532 (559)
41 KOG0547 Translocase of outer m 99.7 6.3E-14 1.4E-18 133.7 35.1 221 506-734 336-564 (606)
42 TIGR00540 hemY_coli hemY prote 99.7 1.4E-14 2.9E-19 149.1 32.5 290 390-698 96-398 (409)
43 KOG1155 Anaphase-promoting com 99.7 4.8E-13 1E-17 127.0 38.5 386 303-735 159-552 (559)
44 TIGR00540 hemY_coli hemY prote 99.7 4.6E-14 1E-18 145.2 33.4 291 424-734 95-397 (409)
45 KOG1126 DNA-binding cell divis 99.7 4.1E-15 8.8E-20 147.9 23.8 283 393-700 334-621 (638)
46 KOG1915 Cell cycle control pro 99.7 1.7E-11 3.7E-16 116.8 46.7 441 145-609 85-549 (677)
47 KOG2047 mRNA splicing factor [ 99.7 9.5E-10 2.1E-14 109.2 59.1 574 95-731 78-718 (835)
48 PRK10747 putative protoheme IX 99.7 1.2E-13 2.7E-18 141.2 33.0 284 391-699 97-390 (398)
49 PF13429 TPR_15: Tetratricopep 99.7 2.1E-16 4.6E-21 154.5 12.0 258 466-734 13-275 (280)
50 KOG1173 Anaphase-promoting com 99.7 2.2E-12 4.7E-17 125.9 38.9 280 459-748 242-528 (611)
51 PRK10747 putative protoheme IX 99.7 1.3E-13 2.8E-18 141.0 32.3 283 426-735 97-389 (398)
52 KOG4162 Predicted calmodulin-b 99.7 3.8E-11 8.2E-16 121.8 48.1 512 111-664 240-783 (799)
53 KOG4162 Predicted calmodulin-b 99.7 4E-11 8.7E-16 121.7 45.6 512 146-700 240-784 (799)
54 KOG4318 Bicoid mRNA stability 99.6 2.7E-11 5.9E-16 124.3 44.2 243 60-323 22-286 (1088)
55 KOG3785 Uncharacterized conser 99.6 9.1E-11 2E-15 107.7 42.1 509 142-734 31-547 (557)
56 COG2956 Predicted N-acetylgluc 99.6 2.2E-12 4.8E-17 116.9 29.4 287 426-736 48-347 (389)
57 KOG2047 mRNA splicing factor [ 99.6 2.4E-09 5.2E-14 106.4 52.4 545 65-650 104-709 (835)
58 PRK12370 invasion protein regu 99.6 5.6E-13 1.2E-17 142.6 27.0 253 475-738 275-537 (553)
59 KOG4318 Bicoid mRNA stability 99.6 5.2E-11 1.1E-15 122.3 38.3 130 607-741 466-599 (1088)
60 KOG1174 Anaphase-promoting com 99.6 2E-10 4.3E-15 107.8 37.8 295 389-705 207-504 (564)
61 COG3071 HemY Uncharacterized e 99.6 2.4E-11 5.1E-16 114.1 31.9 292 391-704 97-395 (400)
62 TIGR02521 type_IV_pilW type IV 99.5 2.1E-12 4.5E-17 123.8 23.6 198 532-734 32-230 (234)
63 KOG1156 N-terminal acetyltrans 99.5 6.1E-10 1.3E-14 111.0 40.4 434 242-700 12-469 (700)
64 KOG1156 N-terminal acetyltrans 99.5 1E-09 2.2E-14 109.4 41.7 263 100-371 10-282 (700)
65 COG3071 HemY Uncharacterized e 99.5 7.7E-11 1.7E-15 110.7 31.5 293 320-669 96-395 (400)
66 KOG1174 Anaphase-promoting com 99.5 3.3E-10 7.2E-15 106.4 35.5 277 374-672 228-507 (564)
67 KOG3785 Uncharacterized conser 99.5 2.5E-09 5.5E-14 98.4 40.2 450 70-599 29-494 (557)
68 COG3063 PilF Tfp pilus assembl 99.5 8.1E-12 1.8E-16 108.2 22.8 206 533-745 37-243 (250)
69 PRK12370 invasion protein regu 99.5 2.5E-12 5.5E-17 137.6 24.7 216 511-735 276-501 (553)
70 COG2956 Predicted N-acetylgluc 99.5 9.1E-11 2E-15 106.6 29.9 273 111-390 48-327 (389)
71 KOG0985 Vesicle coat protein c 99.5 1.6E-08 3.5E-13 105.5 49.5 369 313-734 843-1221(1666)
72 KOG1127 TPR repeat-containing 99.5 1.1E-08 2.4E-13 107.0 47.1 183 77-266 472-658 (1238)
73 KOG0985 Vesicle coat protein c 99.5 1.9E-08 4.2E-13 105.0 48.3 315 342-716 983-1323(1666)
74 KOG1129 TPR repeat-containing 99.5 4.8E-12 1E-16 114.7 19.7 231 499-736 226-458 (478)
75 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.8E-16 117.4 24.4 199 496-698 31-231 (234)
76 KOG0548 Molecular co-chaperone 99.5 4.1E-10 9E-15 110.0 33.0 418 246-695 10-485 (539)
77 PF12569 NARP1: NMDA receptor- 99.5 7.6E-09 1.6E-13 106.7 43.0 292 380-695 196-516 (517)
78 KOG3616 Selective LIM binding 99.4 3.1E-08 6.8E-13 100.0 45.1 191 107-331 741-931 (1636)
79 KOG3616 Selective LIM binding 99.4 8.6E-08 1.9E-12 96.9 47.8 434 208-732 620-1059(1636)
80 KOG1129 TPR repeat-containing 99.4 5.6E-12 1.2E-16 114.3 16.7 243 460-710 222-467 (478)
81 KOG1127 TPR repeat-containing 99.4 5E-08 1.1E-12 102.3 46.8 623 63-712 492-1187(1238)
82 KOG2376 Signal recognition par 99.4 3.3E-08 7.1E-13 97.9 41.0 151 511-693 356-514 (652)
83 PF12569 NARP1: NMDA receptor- 99.4 2.3E-08 5E-13 103.1 41.9 130 275-406 196-333 (517)
84 PRK11189 lipoprotein NlpI; Pro 99.4 2.4E-10 5.2E-15 111.7 26.3 217 475-700 40-266 (296)
85 KOG2376 Signal recognition par 99.4 1.1E-07 2.4E-12 94.3 42.6 455 103-623 17-514 (652)
86 PRK11189 lipoprotein NlpI; Pro 99.4 4E-10 8.6E-15 110.2 26.0 227 427-671 40-271 (296)
87 KOG1840 Kinesin light chain [C 99.4 6.6E-10 1.4E-14 112.8 27.2 175 497-698 284-478 (508)
88 KOG0624 dsRNA-activated protei 99.4 1.7E-08 3.8E-13 92.7 33.1 315 313-670 43-375 (504)
89 KOG0548 Molecular co-chaperone 99.3 7.5E-09 1.6E-13 101.4 32.6 414 280-715 9-470 (539)
90 COG3063 PilF Tfp pilus assembl 99.3 9.4E-10 2E-14 95.6 23.0 161 463-625 37-198 (250)
91 KOG1840 Kinesin light chain [C 99.3 6.4E-10 1.4E-14 112.9 24.8 247 460-734 198-477 (508)
92 KOG3617 WD40 and TPR repeat-co 99.3 9.1E-07 2E-11 91.0 45.0 169 239-439 913-1106(1416)
93 KOG0624 dsRNA-activated protei 99.2 6E-08 1.3E-12 89.3 30.0 233 468-706 113-375 (504)
94 KOG1125 TPR repeat-containing 99.2 4.5E-09 9.8E-14 103.8 21.4 223 420-664 292-527 (579)
95 PLN02789 farnesyltranstransfer 99.2 1.9E-08 4E-13 98.0 25.5 212 466-682 42-267 (320)
96 cd05804 StaR_like StaR_like; a 99.1 1.9E-07 4.2E-12 95.5 33.3 201 498-699 116-336 (355)
97 KOG1125 TPR repeat-containing 99.1 4.8E-09 1E-13 103.6 19.6 226 467-699 291-527 (579)
98 KOG4340 Uncharacterized conser 99.1 2.9E-08 6.3E-13 89.4 22.7 84 471-556 251-335 (459)
99 PF13041 PPR_2: PPR repeat fam 99.1 1.6E-10 3.5E-15 77.9 6.4 49 201-249 1-49 (50)
100 KOG1128 Uncharacterized conser 99.1 3.4E-09 7.5E-14 107.3 17.8 223 456-699 393-616 (777)
101 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 4.9E-15 77.2 6.5 49 166-214 1-49 (50)
102 KOG4340 Uncharacterized conser 99.1 3.1E-07 6.8E-12 83.0 27.8 349 66-439 13-372 (459)
103 TIGR03302 OM_YfiO outer membra 99.1 1.4E-08 3.1E-13 96.6 19.7 185 495-699 32-232 (235)
104 PLN02789 farnesyltranstransfer 99.1 6.6E-08 1.4E-12 94.1 24.3 211 500-716 41-266 (320)
105 cd05804 StaR_like StaR_like; a 99.1 6E-07 1.3E-11 91.9 32.9 307 413-737 6-337 (355)
106 PRK10370 formate-dependent nit 99.1 1.6E-08 3.5E-13 91.6 18.0 119 579-699 52-173 (198)
107 KOG3617 WD40 and TPR repeat-co 99.0 1E-05 2.2E-10 83.6 39.0 336 109-515 811-1190(1416)
108 COG5010 TadD Flp pilus assembl 99.0 3.3E-08 7.1E-13 88.4 19.0 158 535-696 70-228 (257)
109 PRK15179 Vi polysaccharide bio 99.0 2.6E-08 5.6E-13 107.0 21.5 143 562-707 82-224 (694)
110 PRK15359 type III secretion sy 99.0 5.7E-09 1.2E-13 89.4 13.2 115 587-708 14-128 (144)
111 KOG3060 Uncharacterized conser 99.0 1.1E-07 2.5E-12 84.0 21.1 187 475-665 26-221 (289)
112 COG5010 TadD Flp pilus assembl 99.0 4.6E-08 1E-12 87.4 18.4 165 565-735 66-230 (257)
113 PF04733 Coatomer_E: Coatomer 99.0 6.4E-09 1.4E-13 99.9 14.1 129 568-698 133-264 (290)
114 TIGR03302 OM_YfiO outer membra 99.0 4.2E-08 9E-13 93.4 19.5 184 531-736 33-232 (235)
115 PRK15359 type III secretion sy 99.0 8.4E-09 1.8E-13 88.3 13.2 125 551-681 13-137 (144)
116 KOG3060 Uncharacterized conser 99.0 1.9E-07 4E-12 82.7 21.1 190 508-700 24-221 (289)
117 PRK10370 formate-dependent nit 99.0 4.6E-08 9.9E-13 88.7 18.1 154 503-671 23-179 (198)
118 KOG2053 Mitochondrial inherita 99.0 9.5E-05 2.1E-09 77.9 47.0 160 570-734 440-606 (932)
119 PF04733 Coatomer_E: Coatomer 99.0 1.3E-08 2.8E-13 97.8 15.0 261 470-747 10-274 (290)
120 TIGR02552 LcrH_SycD type III s 98.9 1.3E-08 2.9E-13 87.2 12.6 120 587-710 4-123 (135)
121 PRK04841 transcriptional regul 98.9 6.2E-06 1.3E-10 96.0 37.7 376 312-700 345-761 (903)
122 PRK04841 transcriptional regul 98.9 6.6E-06 1.4E-10 95.8 37.3 341 317-665 383-761 (903)
123 KOG1128 Uncharacterized conser 98.9 8.2E-07 1.8E-11 90.6 24.2 238 411-681 396-634 (777)
124 KOG3081 Vesicle coat complex C 98.9 1.5E-06 3.2E-11 77.7 22.4 174 468-662 115-292 (299)
125 PRK14720 transcript cleavage f 98.9 1.5E-06 3.2E-11 94.3 26.7 253 376-698 29-282 (906)
126 PRK15179 Vi polysaccharide bio 98.8 7.1E-07 1.5E-11 96.1 22.7 200 458-673 25-225 (694)
127 KOG2053 Mitochondrial inherita 98.8 0.0004 8.7E-09 73.4 49.2 219 43-268 24-256 (932)
128 COG4783 Putative Zn-dependent 98.8 8.2E-07 1.8E-11 86.7 20.0 142 538-699 313-454 (484)
129 KOG1070 rRNA processing protei 98.8 2.3E-06 4.9E-11 93.4 25.1 211 494-707 1456-1671(1710)
130 COG4783 Putative Zn-dependent 98.8 2.1E-06 4.6E-11 83.9 22.6 154 498-674 308-463 (484)
131 PRK14720 transcript cleavage f 98.8 2.4E-06 5.2E-11 92.7 24.7 234 448-721 18-273 (906)
132 KOG0553 TPR repeat-containing 98.7 1.3E-07 2.9E-12 86.3 12.1 132 574-707 89-223 (304)
133 KOG1914 mRNA cleavage and poly 98.7 0.00039 8.5E-09 69.1 39.8 213 477-691 309-531 (656)
134 PF09976 TPR_21: Tetratricopep 98.7 4E-07 8.7E-12 78.5 13.0 125 568-696 14-144 (145)
135 TIGR02552 LcrH_SycD type III s 98.7 4E-07 8.6E-12 78.0 12.9 115 553-670 5-119 (135)
136 PRK15363 pathogenicity island 98.6 3.1E-07 6.8E-12 76.6 10.4 102 597-700 32-133 (157)
137 KOG1070 rRNA processing protei 98.6 2.1E-05 4.6E-10 86.2 24.8 208 457-668 1454-1667(1710)
138 PF09976 TPR_21: Tetratricopep 98.5 3E-06 6.5E-11 73.1 13.7 125 534-662 15-145 (145)
139 PRK15363 pathogenicity island 98.5 2.5E-06 5.5E-11 71.3 11.1 99 566-665 35-133 (157)
140 KOG1914 mRNA cleavage and poly 98.4 0.0027 5.9E-08 63.4 40.9 75 62-140 19-93 (656)
141 PF12854 PPR_1: PPR repeat 98.4 3.4E-07 7.5E-12 55.0 3.8 27 201-227 5-31 (34)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.4E-06 1.2E-10 82.4 14.3 122 571-697 174-295 (395)
143 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 9.9E-12 54.5 3.9 32 163-194 2-33 (34)
144 KOG0550 Molecular chaperone (D 98.4 3.4E-05 7.5E-10 73.7 18.2 168 494-665 166-351 (486)
145 PLN03088 SGT1, suppressor of 98.4 3.9E-06 8.5E-11 84.2 13.0 107 573-681 9-115 (356)
146 KOG3081 Vesicle coat complex C 98.4 0.0003 6.6E-09 63.4 23.0 106 248-358 147-256 (299)
147 KOG0553 TPR repeat-containing 98.4 3.3E-06 7.2E-11 77.4 11.0 105 607-715 88-192 (304)
148 KOG0550 Molecular chaperone (D 98.4 0.0001 2.2E-09 70.5 21.0 164 468-634 176-356 (486)
149 PRK10153 DNA-binding transcrip 98.4 1.2E-05 2.6E-10 84.2 16.3 150 562-716 333-496 (517)
150 TIGR02795 tol_pal_ybgF tol-pal 98.4 8E-06 1.7E-10 68.1 12.5 61 638-699 42-105 (119)
151 PF12895 Apc3: Anaphase-promot 98.3 5.6E-07 1.2E-11 69.0 4.6 56 638-695 28-83 (84)
152 COG4235 Cytochrome c biogenesi 98.3 1.3E-05 2.7E-10 74.3 14.0 114 585-700 141-257 (287)
153 COG4700 Uncharacterized protei 98.3 0.00011 2.5E-09 62.0 17.7 135 562-698 85-221 (251)
154 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.1E-05 2.3E-10 67.3 12.0 105 567-673 3-113 (119)
155 PF13432 TPR_16: Tetratricopep 98.3 2.9E-06 6.3E-11 61.3 6.9 63 640-705 2-64 (65)
156 PLN03088 SGT1, suppressor of 98.3 1.1E-05 2.4E-10 81.0 13.3 106 605-714 7-112 (356)
157 PF12895 Apc3: Anaphase-promot 98.2 1.6E-06 3.5E-11 66.5 4.9 81 579-661 2-84 (84)
158 PF13414 TPR_11: TPR repeat; P 98.2 3.5E-06 7.6E-11 61.8 5.9 65 634-699 2-67 (69)
159 cd00189 TPR Tetratricopeptide 98.2 1.7E-05 3.6E-10 63.2 9.6 92 605-698 5-96 (100)
160 KOG1130 Predicted G-alpha GTPa 98.1 1.7E-05 3.7E-10 75.4 10.1 132 568-699 197-344 (639)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.5E-05 1.6E-09 74.4 15.3 121 500-625 173-293 (395)
162 PF14559 TPR_19: Tetratricopep 98.1 9.8E-06 2.1E-10 59.2 6.5 65 646-713 2-66 (68)
163 cd00189 TPR Tetratricopeptide 98.1 2.2E-05 4.7E-10 62.4 9.2 96 569-665 3-98 (100)
164 COG4235 Cytochrome c biogenesi 98.1 6.2E-05 1.3E-09 69.8 12.8 105 563-669 153-260 (287)
165 CHL00033 ycf3 photosystem I as 98.1 4.9E-05 1.1E-09 67.7 11.4 43 638-681 75-117 (168)
166 CHL00033 ycf3 photosystem I as 98.0 4.5E-05 9.8E-10 67.9 11.0 99 547-646 15-117 (168)
167 PRK15331 chaperone protein Sic 98.0 6.9E-05 1.5E-09 63.1 10.3 95 602-698 39-133 (165)
168 PRK10803 tol-pal system protei 98.0 6.9E-05 1.5E-09 70.8 11.8 100 566-665 143-247 (263)
169 PRK02603 photosystem I assembl 98.0 9.6E-05 2.1E-09 66.0 12.0 61 637-698 74-148 (172)
170 PRK02603 photosystem I assembl 98.0 0.00013 2.7E-09 65.2 12.7 113 532-665 36-150 (172)
171 PF13371 TPR_9: Tetratricopept 98.0 3.7E-05 8.1E-10 57.1 7.9 67 642-711 2-68 (73)
172 PF13432 TPR_16: Tetratricopep 98.0 2.3E-05 5E-10 56.5 6.4 59 606-665 3-61 (65)
173 PF14938 SNAP: Soluble NSF att 98.0 0.00055 1.2E-08 66.7 17.7 131 539-699 43-184 (282)
174 PF12688 TPR_5: Tetratrico pep 97.9 0.00019 4.1E-09 58.2 11.6 89 537-625 7-100 (120)
175 COG3898 Uncharacterized membra 97.9 0.022 4.8E-07 54.7 30.6 218 473-699 166-392 (531)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.00028 6E-09 57.2 12.3 61 638-698 4-66 (120)
177 KOG0543 FKBP-type peptidyl-pro 97.9 0.00035 7.5E-09 67.5 14.7 141 573-736 215-355 (397)
178 PF14559 TPR_19: Tetratricopep 97.9 2E-05 4.4E-10 57.5 4.9 58 578-636 3-60 (68)
179 PRK10866 outer membrane biogen 97.9 0.0033 7.1E-08 59.2 20.6 95 583-696 141-238 (243)
180 PF14938 SNAP: Soluble NSF att 97.9 0.0013 2.8E-08 64.1 18.0 61 638-698 158-224 (282)
181 PRK11906 transcriptional regul 97.8 0.00064 1.4E-08 67.5 15.6 144 582-732 274-432 (458)
182 COG4700 Uncharacterized protei 97.8 0.0016 3.4E-08 55.4 15.0 127 603-733 92-219 (251)
183 PRK10866 outer membrane biogen 97.8 0.0035 7.5E-08 59.1 19.4 176 534-734 35-239 (243)
184 KOG1130 Predicted G-alpha GTPa 97.8 0.00034 7.3E-09 66.9 12.1 48 317-365 26-77 (639)
185 COG1729 Uncharacterized protei 97.7 0.00058 1.3E-08 62.7 12.3 102 568-671 144-250 (262)
186 PRK10803 tol-pal system protei 97.7 0.00061 1.3E-08 64.5 13.0 101 602-706 144-251 (263)
187 PF13414 TPR_11: TPR repeat; P 97.7 0.0001 2.2E-09 54.0 6.1 60 603-664 6-67 (69)
188 PRK15331 chaperone protein Sic 97.7 0.0024 5.1E-08 54.1 14.7 88 576-664 47-134 (165)
189 TIGR00756 PPR pentatricopeptid 97.7 6.7E-05 1.5E-09 46.0 4.3 33 205-237 2-34 (35)
190 PF10037 MRP-S27: Mitochondria 97.7 0.0011 2.3E-08 66.7 14.4 124 233-356 61-186 (429)
191 TIGR00756 PPR pentatricopeptid 97.7 9.2E-05 2E-09 45.3 4.5 33 310-342 2-34 (35)
192 PF13812 PPR_3: Pentatricopept 97.6 9E-05 2E-09 45.0 4.2 31 205-235 3-33 (34)
193 PRK10153 DNA-binding transcrip 97.6 0.0017 3.8E-08 68.2 16.1 83 584-670 402-487 (517)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00019 4.1E-09 71.0 8.2 67 631-698 71-140 (453)
195 PF10037 MRP-S27: Mitochondria 97.6 0.00086 1.9E-08 67.3 12.6 78 172-249 107-184 (429)
196 PF13812 PPR_3: Pentatricopept 97.6 0.00012 2.6E-09 44.4 4.2 32 310-341 3-34 (34)
197 KOG2041 WD40 repeat protein [G 97.6 0.061 1.3E-06 55.8 25.2 205 305-557 689-904 (1189)
198 PF13525 YfiO: Outer membrane 97.6 0.0094 2E-07 54.7 18.2 92 580-690 104-198 (203)
199 KOG2796 Uncharacterized conser 97.6 0.016 3.4E-07 52.5 18.3 130 498-627 179-313 (366)
200 COG0457 NrfG FOG: TPR repeat [ 97.5 0.089 1.9E-06 50.2 27.5 199 497-698 60-264 (291)
201 KOG2041 WD40 repeat protein [G 97.5 0.16 3.4E-06 52.9 27.8 204 61-298 690-903 (1189)
202 PF13424 TPR_12: Tetratricopep 97.5 6.4E-05 1.4E-09 56.7 2.8 64 635-698 5-74 (78)
203 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.2E-08 63.3 12.8 131 533-664 3-136 (280)
204 PF13525 YfiO: Outer membrane 97.5 0.021 4.6E-07 52.4 19.7 176 414-619 6-197 (203)
205 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.4E-08 50.6 9.8 69 181-249 38-115 (120)
206 KOG4555 TPR repeat-containing 97.5 0.0016 3.5E-08 51.6 10.0 90 575-665 52-145 (175)
207 PF08579 RPM2: Mitochondrial r 97.5 0.0022 4.8E-08 49.8 10.6 76 103-178 30-114 (120)
208 COG0457 NrfG FOG: TPR repeat [ 97.5 0.06 1.3E-06 51.5 24.4 221 510-736 37-265 (291)
209 COG3898 Uncharacterized membra 97.5 0.11 2.4E-06 50.2 30.1 290 416-734 85-390 (531)
210 PRK11906 transcriptional regul 97.5 0.0039 8.4E-08 62.2 14.9 147 547-696 274-433 (458)
211 PF04840 Vps16_C: Vps16, C-ter 97.4 0.068 1.5E-06 52.4 22.4 107 205-331 179-285 (319)
212 PF13371 TPR_9: Tetratricopept 97.4 0.00066 1.4E-08 50.3 6.7 34 632-665 26-59 (73)
213 PF03704 BTAD: Bacterial trans 97.3 0.012 2.6E-07 50.9 14.8 118 576-707 16-138 (146)
214 KOG0543 FKBP-type peptidyl-pro 97.3 0.0037 8E-08 60.6 11.7 104 539-643 216-333 (397)
215 PF01535 PPR: PPR repeat; Int 97.3 0.00041 9E-09 40.9 3.5 26 206-231 3-28 (31)
216 PF01535 PPR: PPR repeat; Int 97.3 0.00036 7.8E-09 41.2 3.2 29 170-198 2-30 (31)
217 COG1729 Uncharacterized protei 97.2 0.0053 1.2E-07 56.6 11.9 102 603-706 144-249 (262)
218 PF13281 DUF4071: Domain of un 97.2 0.072 1.6E-06 52.6 20.3 116 499-615 144-274 (374)
219 PF13424 TPR_12: Tetratricopep 97.2 0.00069 1.5E-08 51.0 5.1 69 567-663 6-74 (78)
220 KOG2796 Uncharacterized conser 97.2 0.17 3.8E-06 46.1 23.4 145 534-710 180-324 (366)
221 PF05843 Suf: Suppressor of fo 97.2 0.0041 8.8E-08 60.3 11.3 131 567-699 2-136 (280)
222 COG4105 ComL DNA uptake lipopr 97.2 0.15 3.3E-06 46.8 20.1 202 531-756 35-251 (254)
223 COG3118 Thioredoxin domain-con 97.1 0.045 9.9E-07 51.0 16.8 120 504-625 142-261 (304)
224 KOG4555 TPR repeat-containing 97.1 0.0069 1.5E-07 48.2 9.8 92 607-700 50-145 (175)
225 PF13428 TPR_14: Tetratricopep 97.1 0.001 2.2E-08 43.1 4.4 41 637-678 3-43 (44)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0029 6.3E-08 62.9 9.6 61 565-625 74-137 (453)
227 PF13512 TPR_18: Tetratricopep 97.1 0.0096 2.1E-07 49.3 10.7 28 638-665 50-77 (142)
228 PF10300 DUF3808: Protein of u 97.0 0.022 4.7E-07 59.7 15.8 119 579-698 246-375 (468)
229 KOG2610 Uncharacterized conser 97.0 0.017 3.6E-07 54.3 13.0 161 508-670 115-283 (491)
230 KOG2610 Uncharacterized conser 97.0 0.048 1E-06 51.4 15.4 117 578-695 115-234 (491)
231 PF06239 ECSIT: Evolutionarily 96.9 0.026 5.6E-07 50.1 12.8 104 96-218 45-153 (228)
232 COG3118 Thioredoxin domain-con 96.9 0.071 1.5E-06 49.8 16.1 123 576-700 144-266 (304)
233 PF13428 TPR_14: Tetratricopep 96.9 0.0013 2.9E-08 42.5 3.8 42 567-608 2-43 (44)
234 KOG1941 Acetylcholine receptor 96.9 0.042 9.1E-07 52.3 14.1 228 471-698 16-274 (518)
235 COG4785 NlpI Lipoprotein NlpI, 96.8 0.052 1.1E-06 47.8 13.6 92 507-601 76-168 (297)
236 KOG2471 TPR repeat-containing 96.8 0.05 1.1E-06 54.0 15.1 144 572-716 212-380 (696)
237 PF07079 DUF1347: Protein of u 96.8 0.6 1.3E-05 46.4 46.1 120 477-603 396-528 (549)
238 KOG4234 TPR repeat-containing 96.8 0.033 7.2E-07 48.2 12.3 94 576-700 105-198 (271)
239 PF06239 ECSIT: Evolutionarily 96.8 0.03 6.5E-07 49.7 12.3 34 219-252 119-152 (228)
240 PF13431 TPR_17: Tetratricopep 96.8 0.0011 2.4E-08 39.7 2.3 32 589-620 2-33 (34)
241 KOG1538 Uncharacterized conser 96.8 0.28 6.1E-06 50.7 20.1 80 497-589 748-827 (1081)
242 KOG1585 Protein required for f 96.7 0.091 2E-06 47.3 14.6 47 477-524 9-59 (308)
243 COG2976 Uncharacterized protei 96.7 0.034 7.4E-07 48.3 11.6 110 586-700 72-189 (207)
244 KOG1941 Acetylcholine receptor 96.7 0.053 1.2E-06 51.6 13.7 226 507-733 17-272 (518)
245 PF13281 DUF4071: Domain of un 96.7 0.34 7.3E-06 48.1 19.7 173 413-597 141-336 (374)
246 PF13512 TPR_18: Tetratricopep 96.7 0.058 1.3E-06 44.8 12.3 60 542-601 21-82 (142)
247 KOG1538 Uncharacterized conser 96.6 0.55 1.2E-05 48.7 21.0 81 602-695 749-829 (1081)
248 KOG1586 Protein required for f 96.6 0.22 4.8E-06 44.6 15.7 150 506-700 24-184 (288)
249 COG4105 ComL DNA uptake lipopr 96.5 0.69 1.5E-05 42.7 19.7 58 422-490 43-100 (254)
250 KOG2114 Vacuolar assembly/sort 96.5 1.7 3.6E-05 47.0 24.4 177 65-264 336-516 (933)
251 KOG1258 mRNA processing protei 96.4 1.5 3.2E-05 45.6 36.4 186 495-684 296-489 (577)
252 PF13431 TPR_17: Tetratricopep 96.4 0.0032 6.9E-08 37.8 2.6 32 658-690 2-33 (34)
253 PF07079 DUF1347: Protein of u 96.4 1.2 2.7E-05 44.3 43.7 346 36-407 14-409 (549)
254 KOG1585 Protein required for f 96.3 0.48 1E-05 42.9 16.2 207 463-694 33-251 (308)
255 PF10300 DUF3808: Protein of u 96.3 0.16 3.6E-06 53.2 16.0 120 613-735 246-375 (468)
256 PF04840 Vps16_C: Vps16, C-ter 96.2 1.4 3E-05 43.4 28.9 107 275-401 179-285 (319)
257 PF04184 ST7: ST7 protein; In 96.2 0.28 6.1E-06 49.5 16.0 75 564-638 257-333 (539)
258 PF06552 TOM20_plant: Plant sp 96.2 0.022 4.8E-07 48.9 7.2 32 582-613 7-38 (186)
259 PF09205 DUF1955: Domain of un 95.9 0.68 1.5E-05 37.5 13.8 63 639-702 90-152 (161)
260 PRK15180 Vi polysaccharide bio 95.9 0.062 1.3E-06 53.2 9.8 120 578-699 301-420 (831)
261 KOG4648 Uncharacterized conser 95.8 0.052 1.1E-06 51.2 8.5 113 572-690 103-215 (536)
262 PF03704 BTAD: Bacterial trans 95.7 0.11 2.3E-06 44.9 9.9 56 138-194 67-122 (146)
263 KOG1258 mRNA processing protei 95.7 3.2 7E-05 43.3 38.8 224 509-738 268-509 (577)
264 COG4649 Uncharacterized protei 95.6 0.53 1.1E-05 40.1 12.7 130 533-663 61-195 (221)
265 KOG2114 Vacuolar assembly/sort 95.6 4.5 9.7E-05 44.0 29.8 140 281-439 376-516 (933)
266 COG4649 Uncharacterized protei 95.5 1.3 2.9E-05 37.8 16.0 138 565-703 58-200 (221)
267 COG4785 NlpI Lipoprotein NlpI, 95.5 1.4 3E-05 39.2 15.5 60 566-625 99-158 (297)
268 KOG1920 IkappaB kinase complex 95.5 3.8 8.3E-05 46.3 22.4 24 382-405 794-819 (1265)
269 PF08631 SPO22: Meiosis protei 95.5 2.6 5.7E-05 40.9 24.1 152 472-625 4-182 (278)
270 KOG4648 Uncharacterized conser 95.5 0.048 1E-06 51.5 7.0 150 537-696 103-260 (536)
271 COG2976 Uncharacterized protei 95.4 0.66 1.4E-05 40.6 13.0 129 533-665 56-189 (207)
272 PF04184 ST7: ST7 protein; In 95.3 1.8 3.8E-05 44.1 17.3 151 508-674 180-334 (539)
273 KOG4234 TPR repeat-containing 95.2 0.16 3.5E-06 44.2 8.8 88 539-627 103-195 (271)
274 PF08631 SPO22: Meiosis protei 95.1 3.5 7.5E-05 40.1 23.7 163 507-671 4-193 (278)
275 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.2 9E-05 40.7 36.4 81 95-178 39-119 (660)
276 PF13176 TPR_7: Tetratricopept 95.1 0.04 8.6E-07 33.6 3.6 25 638-662 2-26 (36)
277 PF07719 TPR_2: Tetratricopept 95.0 0.036 7.8E-07 33.2 3.4 27 638-664 4-30 (34)
278 KOG4642 Chaperone-dependent E3 95.0 0.25 5.4E-06 44.5 9.5 82 542-625 21-103 (284)
279 KOG2280 Vacuolar assembly/sort 94.9 6.5 0.00014 42.2 28.0 111 309-438 685-795 (829)
280 COG3629 DnrI DNA-binding trans 94.9 0.14 3E-06 48.4 8.5 61 64-125 154-214 (280)
281 PF12921 ATP13: Mitochondrial 94.8 0.58 1.3E-05 38.6 10.9 52 373-424 47-99 (126)
282 PF07719 TPR_2: Tetratricopept 94.7 0.08 1.7E-06 31.6 4.4 33 567-599 2-34 (34)
283 KOG1586 Protein required for f 94.7 3.3 7.1E-05 37.6 19.8 94 508-601 85-189 (288)
284 smart00299 CLH Clathrin heavy 94.7 2.2 4.7E-05 36.3 14.8 82 350-439 14-95 (140)
285 PF13176 TPR_7: Tetratricopept 94.6 0.072 1.6E-06 32.4 3.9 27 672-698 1-27 (36)
286 PF12921 ATP13: Mitochondrial 94.5 0.64 1.4E-05 38.4 10.3 98 238-355 2-100 (126)
287 PF00515 TPR_1: Tetratricopept 94.5 0.094 2E-06 31.4 4.2 27 638-664 4-30 (34)
288 PF02259 FAT: FAT domain; Int 94.4 6.5 0.00014 40.0 21.6 65 460-524 145-212 (352)
289 PF00515 TPR_1: Tetratricopept 94.4 0.078 1.7E-06 31.7 3.7 32 567-598 2-33 (34)
290 smart00299 CLH Clathrin heavy 94.3 3 6.5E-05 35.5 15.2 83 69-159 13-95 (140)
291 PF04053 Coatomer_WDAD: Coatom 94.2 3.2 7E-05 43.1 17.1 130 534-695 298-427 (443)
292 PF04053 Coatomer_WDAD: Coatom 94.1 1.4 3E-05 45.7 14.3 108 413-560 295-402 (443)
293 KOG1550 Extracellular protein 94.0 3.9 8.5E-05 44.3 18.2 96 599-700 287-394 (552)
294 PF09205 DUF1955: Domain of un 94.0 2.8 6.1E-05 34.1 13.6 59 468-527 93-151 (161)
295 KOG1920 IkappaB kinase complex 93.6 16 0.00036 41.7 26.2 258 235-558 788-1053(1265)
296 KOG0376 Serine-threonine phosp 93.6 0.26 5.6E-06 49.5 7.5 101 573-675 11-111 (476)
297 PF09613 HrpB1_HrpK: Bacterial 93.4 2.5 5.3E-05 36.2 12.0 76 608-685 18-93 (160)
298 KOG1550 Extracellular protein 93.4 13 0.00028 40.3 20.7 116 474-596 262-394 (552)
299 KOG2280 Vacuolar assembly/sort 93.3 14 0.0003 39.9 33.9 101 575-693 693-793 (829)
300 COG0790 FOG: TPR repeat, SEL1 93.1 9.4 0.0002 37.6 18.1 150 507-665 52-221 (292)
301 PF13170 DUF4003: Protein of u 93.0 6.3 0.00014 38.4 15.9 128 114-243 78-222 (297)
302 PF09613 HrpB1_HrpK: Bacterial 93.0 2.9 6.3E-05 35.7 11.8 80 638-720 13-92 (160)
303 COG2909 MalT ATP-dependent tra 92.9 18 0.00039 40.1 27.2 225 507-732 426-684 (894)
304 PF02259 FAT: FAT domain; Int 92.8 12 0.00027 37.9 26.0 146 530-682 145-304 (352)
305 KOG1308 Hsp70-interacting prot 92.8 0.15 3.3E-06 48.5 4.4 119 578-699 126-244 (377)
306 PF08424 NRDE-2: NRDE-2, neces 92.5 4.2 9.1E-05 40.5 14.5 109 631-742 61-190 (321)
307 COG5107 RNA14 Pre-mRNA 3'-end 92.4 13 0.00029 37.4 39.5 134 531-665 397-532 (660)
308 PF13174 TPR_6: Tetratricopept 92.2 0.19 4.1E-06 29.7 3.0 27 638-664 3-29 (33)
309 PF13170 DUF4003: Protein of u 92.1 13 0.00028 36.4 19.8 83 187-271 81-176 (297)
310 PF13181 TPR_8: Tetratricopept 92.0 0.33 7.2E-06 28.9 3.9 30 568-597 3-32 (34)
311 KOG0545 Aryl-hydrocarbon recep 91.9 4.2 9E-05 37.1 11.9 105 568-700 180-294 (329)
312 KOG3941 Intermediate in Toll s 91.8 1.5 3.3E-05 40.7 9.3 104 96-219 65-174 (406)
313 COG1747 Uncharacterized N-term 91.7 17 0.00038 37.3 22.8 51 649-699 183-234 (711)
314 PF13174 TPR_6: Tetratricopept 91.7 0.3 6.4E-06 28.8 3.5 28 571-598 5-32 (33)
315 PF10345 Cohesin_load: Cohesin 91.6 25 0.00055 38.9 40.0 83 357-439 153-251 (608)
316 KOG2396 HAT (Half-A-TPR) repea 91.6 18 0.00039 37.1 39.6 96 528-625 456-555 (568)
317 KOG3941 Intermediate in Toll s 91.5 1.8 3.8E-05 40.3 9.3 32 221-252 141-172 (406)
318 PF14561 TPR_20: Tetratricopep 91.4 1.3 2.9E-05 33.9 7.5 39 588-626 10-48 (90)
319 COG2909 MalT ATP-dependent tra 91.4 27 0.00058 38.8 27.3 228 468-695 422-684 (894)
320 PF08424 NRDE-2: NRDE-2, neces 91.3 4.5 9.8E-05 40.2 13.2 29 638-666 157-185 (321)
321 KOG4642 Chaperone-dependent E3 91.1 1 2.2E-05 40.7 7.4 106 607-714 17-126 (284)
322 KOG3364 Membrane protein invol 91.1 2.7 5.8E-05 34.4 8.9 70 636-707 33-106 (149)
323 PF10602 RPN7: 26S proteasome 91.0 5.5 0.00012 35.4 12.1 64 99-162 37-102 (177)
324 TIGR02561 HrpB1_HrpK type III 91.0 2.9 6.3E-05 35.0 9.3 71 613-685 23-93 (153)
325 COG3629 DnrI DNA-binding trans 90.6 2.5 5.4E-05 40.2 9.9 59 638-697 156-214 (280)
326 PF10345 Cohesin_load: Cohesin 90.5 32 0.00069 38.1 40.7 49 319-367 372-428 (608)
327 TIGR02561 HrpB1_HrpK type III 90.5 9.6 0.00021 32.1 11.9 25 638-662 96-120 (153)
328 PF06552 TOM20_plant: Plant sp 90.5 1.5 3.2E-05 38.1 7.5 33 582-614 51-83 (186)
329 PF13181 TPR_8: Tetratricopept 90.3 0.7 1.5E-05 27.4 4.1 29 671-699 2-30 (34)
330 PF13374 TPR_10: Tetratricopep 90.2 0.49 1.1E-05 29.8 3.6 27 637-663 4-30 (42)
331 KOG0890 Protein kinase of the 90.2 59 0.0013 40.7 37.7 151 278-436 1388-1541(2382)
332 PF07035 Mic1: Colon cancer-as 89.9 13 0.00027 32.5 15.1 57 206-266 92-148 (167)
333 PF11207 DUF2989: Protein of u 89.7 3 6.5E-05 37.2 9.0 73 617-690 123-198 (203)
334 KOG4507 Uncharacterized conser 89.7 2.7 6E-05 43.4 9.9 104 507-611 618-721 (886)
335 COG3947 Response regulator con 89.7 19 0.00041 34.2 18.6 60 638-698 282-341 (361)
336 PRK10941 hypothetical protein; 89.3 3 6.6E-05 39.8 9.5 67 638-707 184-250 (269)
337 PF04910 Tcf25: Transcriptiona 89.2 27 0.00059 35.3 21.2 103 574-680 111-234 (360)
338 PF10602 RPN7: 26S proteasome 89.1 6.6 0.00014 34.9 11.0 63 497-559 37-101 (177)
339 PF13374 TPR_10: Tetratricopep 88.7 0.91 2E-05 28.5 4.1 28 671-698 3-30 (42)
340 PF07035 Mic1: Colon cancer-as 88.6 16 0.00034 31.9 15.5 135 83-231 14-148 (167)
341 PF14853 Fis1_TPR_C: Fis1 C-te 88.4 2.2 4.8E-05 28.6 5.7 39 672-712 3-41 (53)
342 COG3947 Response regulator con 87.8 25 0.00055 33.3 14.8 55 606-661 285-339 (361)
343 TIGR03504 FimV_Cterm FimV C-te 87.7 1.2 2.6E-05 28.4 3.9 25 675-699 4-28 (44)
344 PF04097 Nic96: Nup93/Nic96; 87.5 51 0.0011 36.4 25.5 28 497-524 325-355 (613)
345 PF07721 TPR_4: Tetratricopept 87.4 0.74 1.6E-05 25.4 2.6 20 639-658 5-24 (26)
346 PF09986 DUF2225: Uncharacteri 87.0 7.4 0.00016 35.8 10.2 92 646-738 88-196 (214)
347 KOG4507 Uncharacterized conser 86.9 2.8 6E-05 43.4 7.9 129 549-681 591-721 (886)
348 PF04910 Tcf25: Transcriptiona 86.7 39 0.00084 34.3 16.0 32 457-488 36-67 (360)
349 PF07721 TPR_4: Tetratricopept 86.2 1.1 2.4E-05 24.7 2.8 24 671-694 2-25 (26)
350 PRK09687 putative lyase; Provi 86.1 35 0.00075 33.2 27.6 186 495-698 67-262 (280)
351 COG0790 FOG: TPR repeat, SEL1 85.8 37 0.00081 33.3 20.1 181 473-665 53-267 (292)
352 PF09986 DUF2225: Uncharacteri 85.3 8.7 0.00019 35.4 9.8 65 638-702 121-197 (214)
353 smart00028 TPR Tetratricopepti 85.0 1.5 3.3E-05 25.0 3.5 26 638-663 4-29 (34)
354 KOG0530 Protein farnesyltransf 84.1 36 0.00078 31.8 12.7 187 541-733 53-250 (318)
355 KOG0890 Protein kinase of the 84.1 1.3E+02 0.0028 38.0 38.0 61 532-595 1671-1731(2382)
356 PF11207 DUF2989: Protein of u 84.1 6.9 0.00015 34.9 8.1 41 545-585 154-197 (203)
357 KOG0276 Vesicle coat complex C 84.0 18 0.00039 38.0 11.9 102 71-193 645-746 (794)
358 smart00028 TPR Tetratricopepti 83.2 2.1 4.5E-05 24.4 3.5 29 569-597 4-32 (34)
359 KOG2471 TPR repeat-containing 83.0 60 0.0013 33.4 26.6 111 421-543 248-381 (696)
360 KOG0276 Vesicle coat complex C 82.9 21 0.00045 37.6 11.9 131 534-696 617-747 (794)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 82.4 8.8 0.00019 29.4 6.8 60 514-574 25-84 (103)
362 KOG0376 Serine-threonine phosp 82.3 3.6 7.8E-05 41.7 6.3 96 607-706 11-106 (476)
363 KOG3364 Membrane protein invol 82.2 17 0.00037 30.0 8.8 76 528-603 29-108 (149)
364 KOG2396 HAT (Half-A-TPR) repea 81.5 70 0.0015 33.1 42.4 239 481-734 302-557 (568)
365 KOG0551 Hsp90 co-chaperone CNS 81.3 18 0.00039 35.0 10.0 96 567-663 82-181 (390)
366 PF04097 Nic96: Nup93/Nic96; 81.1 95 0.0021 34.3 25.5 223 170-408 113-357 (613)
367 COG4455 ImpE Protein of avirul 80.9 14 0.00029 33.4 8.6 60 604-665 5-65 (273)
368 PRK11619 lytic murein transgly 80.9 97 0.0021 34.4 41.0 209 473-696 253-465 (644)
369 KOG4570 Uncharacterized conser 80.9 10 0.00022 36.1 8.3 49 113-161 115-163 (418)
370 PRK10941 hypothetical protein; 80.8 6.8 0.00015 37.4 7.5 51 575-625 190-240 (269)
371 cd00923 Cyt_c_Oxidase_Va Cytoc 80.3 13 0.00027 28.6 7.0 41 189-229 28-68 (103)
372 PF02284 COX5A: Cytochrome c o 80.3 14 0.00031 28.7 7.4 31 164-194 41-71 (108)
373 KOG0545 Aryl-hydrocarbon recep 80.2 18 0.0004 33.2 9.3 57 569-625 233-289 (329)
374 KOG1308 Hsp70-interacting prot 80.0 1.6 3.4E-05 42.0 2.9 94 610-705 124-217 (377)
375 KOG1464 COP9 signalosome, subu 80.0 53 0.0011 30.8 18.3 196 392-595 41-260 (440)
376 COG5159 RPN6 26S proteasome re 80.0 55 0.0012 31.0 20.8 165 500-664 129-314 (421)
377 TIGR02508 type_III_yscG type I 79.6 26 0.00057 27.1 9.0 51 470-526 48-98 (115)
378 PF14561 TPR_20: Tetratricopep 79.5 15 0.00033 28.2 7.7 35 631-665 18-52 (90)
379 KOG4570 Uncharacterized conser 79.5 46 0.00099 32.1 11.9 99 272-372 63-164 (418)
380 PF02284 COX5A: Cytochrome c o 78.9 12 0.00025 29.1 6.5 47 186-232 28-74 (108)
381 PF14853 Fis1_TPR_C: Fis1 C-te 78.4 4 8.6E-05 27.4 3.6 32 572-603 7-38 (53)
382 KOG2066 Vacuolar assembly/sort 78.1 1.2E+02 0.0025 33.6 28.1 102 105-215 363-467 (846)
383 COG1747 Uncharacterized N-term 77.9 92 0.002 32.4 25.5 64 511-575 184-248 (711)
384 TIGR03504 FimV_Cterm FimV C-te 77.3 4 8.6E-05 26.1 3.3 27 639-665 3-29 (44)
385 PF10579 Rapsyn_N: Rapsyn N-te 75.8 8.7 0.00019 28.2 4.9 47 578-624 18-67 (80)
386 PF00637 Clathrin: Region in C 75.6 1.3 2.9E-05 37.8 1.1 83 69-158 13-95 (143)
387 smart00386 HAT HAT (Half-A-TPR 74.8 5.2 0.00011 23.1 3.3 28 580-607 1-28 (33)
388 PF12862 Apc5: Anaphase-promot 74.7 12 0.00026 29.0 6.1 53 647-699 10-70 (94)
389 PF13929 mRNA_stabil: mRNA sta 74.5 84 0.0018 30.2 15.9 115 289-403 144-263 (292)
390 PRK12798 chemotaxis protein; R 74.1 1.1E+02 0.0023 31.2 18.7 192 508-704 124-329 (421)
391 COG4455 ImpE Protein of avirul 72.5 77 0.0017 28.9 11.5 58 569-626 4-61 (273)
392 KOG2062 26S proteasome regulat 72.4 1.6E+02 0.0034 32.4 39.3 122 575-698 510-634 (929)
393 PRK09687 putative lyase; Provi 71.8 1E+02 0.0022 30.0 27.4 135 272-422 141-276 (280)
394 KOG0687 26S proteasome regulat 71.0 1E+02 0.0022 30.0 12.0 26 640-665 149-174 (393)
395 PF10579 Rapsyn_N: Rapsyn N-te 70.8 12 0.00027 27.4 4.7 48 645-693 16-66 (80)
396 COG3914 Spy Predicted O-linked 70.7 1.2E+02 0.0025 32.4 13.3 108 576-684 77-190 (620)
397 PRK12798 chemotaxis protein; R 68.5 1.4E+02 0.0031 30.4 20.7 223 508-737 93-325 (421)
398 KOG4814 Uncharacterized conser 68.2 49 0.0011 35.3 10.1 86 578-664 366-457 (872)
399 PF08311 Mad3_BUB1_I: Mad3/BUB 67.0 53 0.0011 27.2 8.6 44 653-696 81-125 (126)
400 KOG2422 Uncharacterized conser 66.8 1.8E+02 0.0039 30.9 16.4 171 425-597 250-450 (665)
401 PF00637 Clathrin: Region in C 66.3 3.3 7.3E-05 35.3 1.5 45 216-260 20-64 (143)
402 COG5191 Uncharacterized conser 65.7 23 0.00049 33.9 6.6 76 530-606 106-182 (435)
403 KOG4279 Serine/threonine prote 65.3 1.2E+02 0.0026 33.2 12.4 182 480-665 182-396 (1226)
404 KOG0551 Hsp90 co-chaperone CNS 65.0 35 0.00076 33.1 7.8 94 533-626 83-179 (390)
405 cd02679 MIT_spastin MIT: domai 64.3 25 0.00053 26.1 5.4 62 649-735 3-67 (79)
406 KOG2063 Vacuolar assembly/sort 63.9 2.7E+02 0.0059 31.9 25.2 61 66-126 310-374 (877)
407 PRK15180 Vi polysaccharide bio 63.5 1.9E+02 0.004 29.9 31.1 86 179-266 334-419 (831)
408 PF12862 Apc5: Anaphase-promot 63.3 31 0.00066 26.7 6.2 26 638-663 44-69 (94)
409 KOG3824 Huntingtin interacting 62.5 13 0.00029 35.2 4.6 61 543-604 128-188 (472)
410 COG4976 Predicted methyltransf 62.3 16 0.00035 33.3 4.8 60 609-670 4-63 (287)
411 KOG2422 Uncharacterized conser 62.1 2.2E+02 0.0048 30.3 17.0 35 576-610 352-387 (665)
412 PF07575 Nucleopor_Nup85: Nup8 61.8 2.5E+02 0.0054 30.8 15.8 23 510-532 509-531 (566)
413 KOG0530 Protein farnesyltransf 61.1 1.5E+02 0.0033 28.0 19.6 204 473-680 55-269 (318)
414 KOG2758 Translation initiation 60.8 1.7E+02 0.0037 28.5 13.3 65 670-735 129-195 (432)
415 KOG4077 Cytochrome c oxidase, 60.0 54 0.0012 26.8 6.8 58 515-573 68-125 (149)
416 PF10255 Paf67: RNA polymerase 59.5 18 0.00039 36.8 5.3 28 634-661 163-190 (404)
417 PF10255 Paf67: RNA polymerase 59.3 16 0.00034 37.1 4.9 60 639-698 126-192 (404)
418 PF13929 mRNA_stabil: mRNA sta 58.1 1.8E+02 0.0039 28.0 17.6 61 165-225 199-260 (292)
419 PF04190 DUF410: Protein of un 58.0 1.8E+02 0.0039 27.9 18.7 79 564-664 88-170 (260)
420 PHA02875 ankyrin repeat protei 56.9 2.5E+02 0.0054 29.2 15.6 17 175-191 72-88 (413)
421 PF07163 Pex26: Pex26 protein; 56.4 1.7E+02 0.0036 28.1 10.4 87 315-401 90-181 (309)
422 COG2912 Uncharacterized conser 56.3 61 0.0013 30.8 7.8 70 638-710 184-253 (269)
423 COG5159 RPN6 26S proteasome re 56.3 1.9E+02 0.0041 27.7 17.5 128 466-593 8-152 (421)
424 KOG4814 Uncharacterized conser 56.2 76 0.0017 34.0 9.0 94 602-698 356-456 (872)
425 PF07163 Pex26: Pex26 protein; 56.1 1.2E+02 0.0026 29.0 9.4 57 210-266 90-146 (309)
426 PF07720 TPR_3: Tetratricopept 56.0 24 0.00053 21.4 3.5 24 671-694 2-25 (36)
427 PF04781 DUF627: Protein of un 54.4 1.1E+02 0.0024 24.5 9.0 26 576-601 6-31 (111)
428 PF04090 RNA_pol_I_TF: RNA pol 53.9 1.7E+02 0.0037 26.5 10.1 26 499-524 44-69 (199)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 53.7 1E+02 0.0022 25.5 8.1 44 549-592 81-125 (126)
430 PF09670 Cas_Cas02710: CRISPR- 53.4 2.2E+02 0.0047 29.3 12.0 16 648-663 254-269 (379)
431 PF00244 14-3-3: 14-3-3 protei 53.3 1.5E+02 0.0033 27.9 10.1 47 652-698 143-197 (236)
432 PF10516 SHNi-TPR: SHNi-TPR; 53.3 30 0.00065 21.3 3.6 28 671-698 2-29 (38)
433 COG5191 Uncharacterized conser 53.0 37 0.0008 32.5 5.8 80 562-643 103-184 (435)
434 PF12968 DUF3856: Domain of Un 52.9 45 0.00098 26.9 5.3 61 638-698 58-128 (144)
435 PF13762 MNE1: Mitochondrial s 52.1 1.5E+02 0.0032 25.2 10.4 82 135-216 41-128 (145)
436 PF14689 SPOB_a: Sensor_kinase 50.4 49 0.0011 23.2 4.8 46 651-698 6-51 (62)
437 KOG1839 Uncharacterized protei 50.4 71 0.0015 37.5 8.5 156 540-695 941-1124(1236)
438 TIGR02508 type_III_yscG type I 49.2 1.3E+02 0.0028 23.6 7.8 51 107-163 48-98 (115)
439 KOG1464 COP9 signalosome, subu 49.0 2.4E+02 0.0052 26.7 23.2 248 182-439 41-329 (440)
440 COG4259 Uncharacterized protei 48.5 1.3E+02 0.0028 23.4 7.0 52 656-709 58-109 (121)
441 PF10516 SHNi-TPR: SHNi-TPR; 48.3 40 0.00086 20.8 3.6 27 637-663 3-29 (38)
442 PF11817 Foie-gras_1: Foie gra 48.0 63 0.0014 30.7 6.9 58 638-695 181-243 (247)
443 KOG2063 Vacuolar assembly/sort 47.8 4.9E+02 0.011 30.0 27.8 40 386-425 599-638 (877)
444 PF11846 DUF3366: Domain of un 47.7 78 0.0017 28.7 7.2 36 562-597 140-175 (193)
445 PF15297 CKAP2_C: Cytoskeleton 47.6 90 0.0019 30.8 7.6 65 650-716 118-186 (353)
446 PF13934 ELYS: Nuclear pore co 47.3 90 0.002 29.1 7.6 84 31-120 111-198 (226)
447 KOG4521 Nuclear pore complex, 47.3 5.5E+02 0.012 30.4 14.8 183 418-625 925-1127(1480)
448 KOG1310 WD40 repeat protein [G 46.3 43 0.00092 34.8 5.4 85 580-664 388-474 (758)
449 KOG3824 Huntingtin interacting 45.9 42 0.00091 32.1 5.0 53 506-559 126-178 (472)
450 PRK11619 lytic murein transgly 45.8 4.7E+02 0.01 29.2 41.6 119 425-558 253-373 (644)
451 KOG3807 Predicted membrane pro 45.5 1.1E+02 0.0024 29.7 7.7 120 512-642 232-353 (556)
452 PF14689 SPOB_a: Sensor_kinase 45.2 52 0.0011 23.1 4.3 23 536-558 28-50 (62)
453 cd08819 CARD_MDA5_2 Caspase ac 44.8 1.4E+02 0.003 22.7 7.4 14 357-370 50-63 (88)
454 PF04762 IKI3: IKI3 family; I 44.8 5.9E+02 0.013 30.0 15.6 30 308-337 812-843 (928)
455 COG0735 Fur Fe2+/Zn2+ uptake r 44.7 82 0.0018 26.9 6.3 48 65-112 22-69 (145)
456 COG4976 Predicted methyltransf 44.5 59 0.0013 29.8 5.5 61 575-636 4-64 (287)
457 PF10366 Vps39_1: Vacuolar sor 44.1 1.1E+02 0.0024 24.5 6.6 26 638-663 42-67 (108)
458 cd00280 TRFH Telomeric Repeat 43.8 1.6E+02 0.0034 26.2 7.6 21 574-594 119-139 (200)
459 KOG0292 Vesicle coat complex C 43.5 2.8E+02 0.0061 31.3 11.1 157 383-594 625-781 (1202)
460 PF13762 MNE1: Mitochondrial s 43.2 2.1E+02 0.0045 24.4 9.2 81 66-146 42-128 (145)
461 smart00777 Mad3_BUB1_I Mad3/BU 43.0 85 0.0018 25.9 5.8 43 652-694 80-123 (125)
462 PF12753 Nro1: Nuclear pore co 42.8 63 0.0014 32.5 5.9 47 650-699 333-391 (404)
463 PF11846 DUF3366: Domain of un 42.2 69 0.0015 29.0 6.0 47 651-699 127-173 (193)
464 PHA02875 ankyrin repeat protei 42.1 4.2E+02 0.0091 27.5 15.3 114 174-296 38-155 (413)
465 KOG4077 Cytochrome c oxidase, 41.7 1.2E+02 0.0027 24.8 6.2 53 549-601 67-119 (149)
466 PF07575 Nucleopor_Nup85: Nup8 40.9 1.6E+02 0.0034 32.4 9.4 95 203-301 372-466 (566)
467 COG0735 Fur Fe2+/Zn2+ uptake r 40.5 1.7E+02 0.0038 24.9 7.7 62 85-147 8-69 (145)
468 KOG0687 26S proteasome regulat 40.5 3.7E+02 0.008 26.5 15.1 100 497-598 105-213 (393)
469 PF09477 Type_III_YscG: Bacter 39.6 1.9E+02 0.0042 23.0 8.5 31 165-197 68-98 (116)
470 COG2912 Uncharacterized conser 39.3 95 0.0021 29.5 6.3 50 576-625 191-240 (269)
471 COG3914 Spy Predicted O-linked 39.1 5.1E+02 0.011 27.9 11.8 114 585-699 50-171 (620)
472 KOG0128 RNA-binding protein SA 38.8 6.3E+02 0.014 28.6 32.7 78 548-625 443-522 (881)
473 cd00280 TRFH Telomeric Repeat 38.5 2.4E+02 0.0051 25.1 7.9 39 384-425 117-155 (200)
474 cd02680 MIT_calpain7_2 MIT: do 38.0 66 0.0014 23.6 4.0 33 651-699 3-35 (75)
475 PF09670 Cas_Cas02710: CRISPR- 37.8 4.7E+02 0.01 26.9 13.1 57 468-525 138-198 (379)
476 PF10366 Vps39_1: Vacuolar sor 37.6 2E+02 0.0043 23.0 7.1 27 380-406 41-67 (108)
477 KOG0292 Vesicle coat complex C 37.4 3.4E+02 0.0075 30.7 10.6 129 576-735 653-781 (1202)
478 smart00777 Mad3_BUB1_I Mad3/BU 36.9 2.1E+02 0.0045 23.7 7.2 45 687-732 80-124 (125)
479 KOG2758 Translation initiation 36.2 4.3E+02 0.0093 25.9 19.8 78 551-628 112-195 (432)
480 PF12968 DUF3856: Domain of Un 35.9 2.4E+02 0.0053 23.0 10.6 24 639-662 104-127 (144)
481 PF09797 NatB_MDM20: N-acetylt 35.6 5E+02 0.011 26.5 23.0 50 580-629 197-246 (365)
482 KOG2066 Vacuolar assembly/sort 35.2 6.9E+02 0.015 28.1 28.7 73 246-324 364-439 (846)
483 PF11848 DUF3368: Domain of un 34.2 1.4E+02 0.003 19.6 5.2 33 319-351 13-45 (48)
484 KOG2908 26S proteasome regulat 34.1 4.8E+02 0.01 25.9 13.1 83 644-727 84-177 (380)
485 PF11663 Toxin_YhaV: Toxin wit 33.7 38 0.00082 28.0 2.4 31 473-505 107-137 (140)
486 PRK10564 maltose regulon perip 32.9 89 0.0019 30.2 5.1 36 311-346 260-295 (303)
487 PF11817 Foie-gras_1: Foie gra 32.0 3E+02 0.0065 26.1 8.7 23 465-487 182-204 (247)
488 PF04190 DUF410: Protein of un 31.8 4.7E+02 0.01 25.1 20.2 27 376-402 88-114 (260)
489 COG4941 Predicted RNA polymera 30.9 5.4E+02 0.012 25.5 12.8 123 475-601 270-400 (415)
490 PF04762 IKI3: IKI3 family; I 30.8 3.5E+02 0.0076 31.8 10.4 24 604-627 816-841 (928)
491 KOG2297 Predicted translation 30.7 5.2E+02 0.011 25.2 19.8 20 344-363 322-341 (412)
492 cd02683 MIT_1 MIT: domain cont 30.6 2.2E+02 0.0049 21.0 6.6 15 683-697 19-33 (77)
493 COG5187 RPN7 26S proteasome re 30.5 5.1E+02 0.011 25.1 12.3 108 495-604 114-230 (412)
494 PF10475 DUF2450: Protein of u 30.4 4.2E+02 0.009 26.0 9.6 52 279-336 104-155 (291)
495 KOG2034 Vacuolar sorting prote 30.2 8.8E+02 0.019 27.8 27.2 46 385-439 511-556 (911)
496 KOG0128 RNA-binding protein SA 29.6 8.8E+02 0.019 27.6 31.5 65 638-703 464-530 (881)
497 KOG2659 LisH motif-containing 29.0 4.8E+02 0.01 24.3 10.7 97 527-625 22-128 (228)
498 KOG4567 GTPase-activating prot 28.6 3.1E+02 0.0066 26.8 7.6 71 188-263 263-343 (370)
499 PF04781 DUF627: Protein of un 28.1 3.2E+02 0.0069 22.0 8.0 21 505-525 5-25 (111)
500 PF05944 Phage_term_smal: Phag 28.1 3.6E+02 0.0078 22.6 7.3 112 71-187 21-132 (132)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-75 Score=658.60 Aligned_cols=666 Identities=18% Similarity=0.203 Sum_probs=603.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 047305 39 MKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKAL 118 (767)
Q Consensus 39 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 118 (767)
.+.+....|.++|..+.+.....+..+++.++..+++.|+++.|+++|++|.. ++..+|+.++.+|.+.|++++|+
T Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~ 172 (857)
T PLN03077 97 EWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEAL 172 (857)
T ss_pred hhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHH
Confidence 33445556666666655554444667788899999999999999999999974 56789999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 119 ESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
++|++|...|+.||..+|+.++++|++.+++..+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|..
T Consensus 173 ~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-- 250 (857)
T PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-- 250 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 047305 199 ILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSC 278 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (767)
||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.
T Consensus 251 --~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 251 --RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred --CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGL 358 (767)
Q Consensus 279 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (767)
|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 9999999999999999999996 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 359 LDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
++.|.+++..+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|+.+|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6888999999999999999999999999
Q ss_pred hhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047305 439 MEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518 (767)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 518 (767)
|. ....|+..++..++.++++.|+++.+.+++..+.+.|..++..+++.|+.+|++.|+.++|..+
T Consensus 481 m~--------------~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 481 ML--------------LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HH--------------hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 96 3466889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--
Q 047305 519 FKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI-- 596 (767)
Q Consensus 519 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 596 (767)
|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|.+..
T Consensus 547 f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 547 FNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9987 579999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.++...+..++..+.+.|+.++|.+.+.++.. .|+ +..|..|+.+|...|+.+.|....+++.+.. |.++..|..+
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~--~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll 697 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPI--TPD-PAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILL 697 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHH
Confidence 44556888999999999999999999998853 355 4559999999999999999999999999886 7888999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhh------cCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY----LLRSLLF------SKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~l~~------~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+++|...|+|++|.++.+.|.+.|+++++...-. -...+.. ...+.+.....+.++|++.||.||..
T Consensus 698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999999988753211 0111110 01122345566788899999999864
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-73 Score=640.06 Aligned_cols=669 Identities=16% Similarity=0.163 Sum_probs=472.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 047305 33 TVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVG 112 (767)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (767)
.+...+-+.+++..|+.+|+.+....-.++..+|..++..+.+.+.++.+.+++..+.+.+..++..+++.++..|.+.|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 34444555566777777777665544334556666777777777777777777777777666666677777777777777
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047305 113 DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLD 192 (767)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 192 (767)
+.+.|.++|++|. +||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++++|++.+++..+.+++.
T Consensus 136 ~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 136 ELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred ChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 7777777777775 366777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 193 EMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPR 272 (767)
Q Consensus 193 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (767)
.+.+.|+.||..+++.++.+|++.|++++|..+|++|. .||..+|++++.+|++.|+.++|.++|++|.+.|+.||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777765 25667777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 273 LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKG 352 (767)
Q Consensus 273 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (767)
..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777643 466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047305 353 FCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKA 432 (767)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 432 (767)
|.+.|++++|.++|++|.+.+..||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 047305 433 NLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNI 512 (767)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 512 (767)
.++|++|. .++..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.++.+|++.|+.
T Consensus 444 ~~vf~~m~-----------------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 444 LEVFHNIP-----------------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHhCC-----------------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 77777663 13455677777777777777777777777754 3667777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
+.+.+++..+.+.|+.++..+++.++..|.+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777665 466777777777777777777777777777
Q ss_pred Hhc-cCCCccchHHHHHHHHhcCCHHHHHHHHHHhh-h-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 593 LRD-ISGRDDESMKSIEEFLQKGEVENAIQGLLEMD-F-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 593 ~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
.+. ..++..++..++.++.+.|..++|.+.+.++. . +..|+ ...|..++.+|++.|++++|.+++++|- ++||
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd 656 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD 656 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC
Confidence 643 34455666666777777777777777777654 2 22333 3447777777777777777777777762 4677
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
..+|..|..+|...|+.+.|+...+++++ +.|+......++...+...|+ |++|.++.+.|++.|+.++.+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~-~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK-WDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC-hHHHHHHHHHHHHcCCCCCCC
Confidence 77777777777777777777777766665 346665555555555547777 888888888888888887764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-65 Score=565.56 Aligned_cols=546 Identities=18% Similarity=0.243 Sum_probs=389.7
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 96 VVSDVFFVLISGYYKVGDCEKALESFGKMKEFDC-QPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
.+...|..++..+.+.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..+.|..+++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3445566666666666666666666666666553 34555556666666666666666666666643 666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRV 254 (767)
Q Consensus 175 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (767)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFE--EKIEPDVVLYGVMIRGLSEAGKVKDAMKLLS 332 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (767)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 3556666666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 333 DMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
+|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
..+|+.++.+|++.|++++|.++|++| .+.+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM------------------------------------------------~~~g~ 715 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDI------------------------------------------------KSIKL 715 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH------------------------------------------------HHcCC
Confidence 666666666666666665555555554 57778
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 493 LPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
.|+..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.+++..|.+.|+.|+..+|+++
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..|. +++++|..+.+.++. +. ...+. ...+..+
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~----------------------------f~----~g~~~------------~~n~w~~ 829 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVS----------------------------FD----SGRPQ------------IENKWTS 829 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhh----------------------------hh----ccccc------------cccchHH
Confidence 87654 245555554332221 00 00011 1123346
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|+.+|++|++.|+.||..+|..++.++.+.+..+.+..+++.+...+..|+..+++.++..+. +..++|..++++
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~----~~~~~A~~l~~e 905 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG----EYDPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc----cChHHHHHHHHH
Confidence 7999999999999999999999999888888889999999888877777777888888888763 213679999999
Q ss_pred HHHcCCCCCCc
Q 047305 733 MKSVGYDLDAC 743 (767)
Q Consensus 733 ~~~~~~~~~~~ 743 (767)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=555.72 Aligned_cols=516 Identities=18% Similarity=0.232 Sum_probs=475.5
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNV-SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV 139 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 139 (767)
++...|..++..+++.|+++.|+++|++|...|+ +++..++..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4677888899999999999999999999999986 45667778899999999999999999999974 999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 047305 140 LNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA 219 (767)
Q Consensus 140 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 219 (767)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047305 220 DEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK--DGFVPRLGSYSCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 297 (767)
++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
+|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 378 THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-------------~Gi 750 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-------------LGL 750 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------cCC
Confidence 9999999999999999999999999999999999999999999999999999999999999952 456
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----c-------------------CCHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----V-------------------GNING 514 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 514 (767)
.|+..+|..++.+|++.|+++.|.+++.+|.+.|..||..+|+.++..|.+ . +..+.
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 789999999999999999999999999999999999999999999865432 1 12356
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 515 ALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 515 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|...+..|+..+|+.+++++.+. .++|..+|++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 77888888888888888888888877777777777777887777666777788888888876322 3578888888874
Q ss_pred c
Q 047305 595 D 595 (767)
Q Consensus 595 ~ 595 (767)
.
T Consensus 909 ~ 909 (1060)
T PLN03218 909 L 909 (1060)
T ss_pred c
Confidence 3
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-60 Score=521.58 Aligned_cols=478 Identities=20% Similarity=0.287 Sum_probs=439.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 96 VVSDVFFVLISGYYKVGDCEKALESFGKMKEF-DCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
.+...|+.++..|.+.|++++|+++|+.|... ++.|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999875 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRV 254 (767)
Q Consensus 175 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (767)
+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDM 334 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (767)
+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 459999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047305 335 RERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG 414 (767)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 414 (767)
.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..|+..+++.|+++|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864 6888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP 494 (767)
Q Consensus 415 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (767)
+|+.++.+|++.|+.++|.++|++| .+.|..|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M------------------------------------------------~~~g~~P 424 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERM------------------------------------------------IAEGVAP 424 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHH------------------------------------------------HHhCCCC
Confidence 9999999998888888877777776 3677889
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQL-KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
|..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|. +.|+..+|..++
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll 501 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALL 501 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHH
Confidence 999999999999999999999999999986 5899999999999999999999999999988764 789999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.+|...|+++.|..+++++++. .|++...|..|+++|++.|++++
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~-----------------------------------~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGM-----------------------------------GPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCC-----------------------------------CCCCCcchHHHHHHHHhCCCHHH
Confidence 9999999999988887666533 36666668888888888888888
Q ss_pred HHHHHHHHHHcCCCCChH
Q 047305 654 ALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~ 671 (767)
|.+++++|.+.|+++.+.
T Consensus 547 A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHHHHHHcCCccCCC
Confidence 888888888888766554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-59 Score=512.13 Aligned_cols=516 Identities=16% Similarity=0.208 Sum_probs=442.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 130 QPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN-CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTI 208 (767)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 208 (767)
..+..+|+.++..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+..++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566688888999999999999999999888764 678888999999999988888889999999988888889999999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 047305 209 VISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKR 288 (767)
Q Consensus 209 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 288 (767)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999988863 68888999999998889999999999998888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 289 YDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVE 368 (767)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (767)
.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888854 4788888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhh
Q 047305 369 IWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLF 448 (767)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 448 (767)
|.+.|..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-------- 387 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-------- 387 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------
Confidence 888888888888888888888888888888888888888888888888888888888888888888887763
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 449 LRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLR 528 (767)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 528 (767)
.||..+|+.||.+|++.|+.++|+++|++|...|+.
T Consensus 388 --------------------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 388 --------------------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred --------------------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 529 PDSVTYGTLINGLQRVDREEDAFRIFGQMPQ-NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 529 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|..++++|++.|++++|.++++++ |
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~---------- 489 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----P---------- 489 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----C----------
Confidence 9999999999999999999999999999976 689999999999999999999999998876543 1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 687 (767)
..|+. .+|+.|+.+|...|+++.|..+++++.+.+ |.+..+|..++++|.+.|+++
T Consensus 490 ----------------------~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 490 ----------------------FKPTV-NMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred ----------------------CCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHH
Confidence 12443 449999999999999999999999998876 667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHH-HHHHH---HHHh-h-----cCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 688 LAMDVFLYTLKNGFILRPRV-CNYLL---RSLL-F-----SKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 688 ~A~~~~~~~~~~~~~~~~~~-~~~l~---~~l~-~-----~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+|.+++++|.+.|+.+.+.. |..+. ..+. . ...+.++....+.++|.+.||.||..
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999998765542 11100 0000 0 11122567778889999999999965
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-41 Score=394.34 Aligned_cols=668 Identities=14% Similarity=0.044 Sum_probs=372.8
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 047305 34 VTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGD 113 (767)
Q Consensus 34 ~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (767)
...++...+++..|...|+.+....+ .+..++..++.++...|+++.|...++.+.+.. +.++..+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcC
Confidence 34555667788999999988877654 466778888888888899999998888887765 3344444455555667788
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047305 114 CEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDE 193 (767)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 193 (767)
+++|+..|+++.+.+ +.+...+..+..++...|+++.|...+.++.+.. +.+...+..+...+.+.|++++|...++.
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777644 2223344455556667777777777777776653 34455666666677777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047305 194 MTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRL 273 (767)
Q Consensus 194 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (767)
+..... .+...+..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.... ..
T Consensus 355 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 431 (899)
T TIGR02917 355 ALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LG 431 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-ch
Confidence 665532 255666667777777777777777777766542 224445556666666666777676666666554321 22
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 274 GSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 274 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
.....++..+.+.|++++|..+++++....+ .+..++..+...+...|++++|...|+++.+.... +...+..+...+
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 509 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARID 509 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Confidence 3444455566666666666666666655432 24455566666666666666666666665554322 344455555556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047305 354 CDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKAN 433 (767)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 433 (767)
...|++++|...++.+....+ .+..++..+...+.+.|++++|..+++++...+. .+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666655443 3445555555555566666666666665554432 23444555555555566666666
Q ss_pred HHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 434 LLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
.+++++. ...+.+...+..++..+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 588 ~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 588 AILNEAA--------------DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHH--------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 6555553 1122334445555555555555555555555554432 123344444555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+|...++++.... +.+..++..++..+...|++++|..+++.+.+.. +.+...+..++.++.+.|++++|...|++++
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554432 1123444445555555555555555555554432 3334444444444555555555555555555
Q ss_pred hccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 594 RDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
+..|.+ ..+..++.++...|++++|.+.+.+... ..|+++.++..++.+|...|++++|+.+|+++++.+ |+++.++
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK-THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 444444 3334445555555555555544444221 134444445555555555555555555555555444 4444455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 674 VKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 674 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
..+++++...|+ ++|+.++++++.. .|+.......+...+...|+ +++|..+++++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 555555555555 4455555555442 23333222222222224444 55555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.1e-41 Score=389.41 Aligned_cols=664 Identities=14% Similarity=0.042 Sum_probs=445.5
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChh
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCE 115 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (767)
.++...++.+.|...|+.+.+..+. +...+.....+....|+++.|...++++.+.+ +.....+..+...+...|+++
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHH
Confidence 3344456677777777766655442 33333334445556677777777777776654 223344445566666777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047305 116 KALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMT 195 (767)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 195 (767)
+|...|+++.+.. +.+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.
T Consensus 313 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 313 QAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777776543 4455566666777777777777777777776654 4456667777777777777777777777776
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 047305 196 QRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGS 275 (767)
Q Consensus 196 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (767)
+.... +...+..+...+...|++++|.+.|+.+.+.... .......++..+.+.|++++|..+++++.... +.+..+
T Consensus 391 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 391 ELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred hcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 65322 4556666667777777777777777777665322 23344556666777777777777777776543 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
+..+...+...|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+.... +..++..+...+..
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 777777777777777777777777665433 4555666677777777777777777777665433 56667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLL 435 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 435 (767)
.|+.++|...+..+...++ .+...+..++..|...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766553 445566667777777777777777777776543 23566777777777777777777777
Q ss_pred HHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047305 436 FYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (767)
|+++. ...+.+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 624 ~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 624 FKKLL--------------ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHH--------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77764 1223455666677777777777777777777776653 23456677777777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 516 LKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 516 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
..+++.+...+ ..+...+..+...+...|++++|...++.+.+. .|+..++..++.++.+.|++++|.+.++++++.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777654 234556666677777777777777777777664 344456666677777777777777777777777
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|+++.++..++..|...|++++|++.+.++.. ..|+++.++..+++++...|+ .+|+.+++++.+.. |.++..+..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK-KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHH
Confidence 777777777777777777777777777777432 246666677777777777777 66777777777665 666667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
++.++...|++++|..+|+++++.+.. ++.++..+...+. ..|+ +++|.+++++|.
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL-ATGR-KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH-HcCC-HHHHHHHHHHHh
Confidence 777777777777777777777765522 4555555555555 6666 777777777764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.1e-31 Score=305.94 Aligned_cols=650 Identities=13% Similarity=0.011 Sum_probs=429.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-------------
Q 047305 70 ISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIY------------- 136 (767)
Q Consensus 70 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------- 136 (767)
+++....++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.+++..+.. +.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 334444555555555555555443 3345555555555555555555555555555433 2222111
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 137 ---NAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIV-TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISG 212 (767)
Q Consensus 137 ---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 212 (767)
..+...+.+.|++++|.+.|+++.+.+ +++.. ............|+.++|...++++.+.... +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 112233455555666665555555433 22221 1111111112235555566666555554211 34445555555
Q ss_pred HHccCCHhHHHHHHHHHHHCC------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047305 213 LCQINRADEAYRLFLKMKDSG------------------CSPD-FVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRL 273 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (767)
+...|+.++|+..++++.... ..+. ...+...+..+-.......|...+.........|..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 555555555665555554321 0110 011111122222222344555666555443222322
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH------
Q 047305 274 GSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCY------ 346 (767)
Q Consensus 274 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------ 346 (767)
........+...|++++|+..|++.++..+. +...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 271 -~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 -RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1223456778899999999999999987544 778889999999999999999999999887643321 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047305 347 ------NALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALI 420 (767)
Q Consensus 347 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 420 (767)
......+.+.|++++|...++++++..+ .+...+..+...+...|++++|+..|+++.+.... +...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 2234567789999999999999999865 46677888899999999999999999999886532 456677777
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN 500 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (767)
..|. .+++++|...++.+.... +...... ........+..++..+...|++++|...|+++.+..+. +...+.
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~-~~~~~~~----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQ-RRSIDDI----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHH-HHHHHHH----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 7664 467899999887763211 0000000 00111234566788889999999999999999887433 567778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---------hhHHH
Q 047305 501 SLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSP---------AVYKS 571 (767)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~ 571 (767)
.+...|.+.|++++|...++++...... +...+..+...+...++.++|+..++.+......+.. ..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8899999999999999999999876322 3444555555677889999999999987643222222 12234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
.+..+...|++++|+.+++ ..|.++..+..++..+.+.|++++|+..+.+... ..|+++.++..++.+|...|++
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-REPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCH
Confidence 5667889999999999876 5799999999999999999999999999998432 3699999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCccHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP----RVCNYLLRSLLFSKDNKKVHAY 727 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~a~ 727 (767)
++|++.++++.+.. +.++.++..++.++...|++++|.+++++++.......+ ......+..++...|+ +++|.
T Consensus 654 ~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~-~~~A~ 731 (1157)
T PRK11447 654 AAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ-PQQAL 731 (1157)
T ss_pred HHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC-HHHHH
Confidence 99999999998876 677888899999999999999999999999875321111 1222233455558888 99999
Q ss_pred HHHHHHH-HcCCCCCC
Q 047305 728 HLLCRMK-SVGYDLDA 742 (767)
Q Consensus 728 ~~~~~~~-~~~~~~~~ 742 (767)
..+++.. ..|+.|+.
T Consensus 732 ~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 732 ETYKDAMVASGITPTR 747 (1157)
T ss_pred HHHHHHHhhcCCCCCC
Confidence 9999976 34555553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-31 Score=307.25 Aligned_cols=632 Identities=14% Similarity=0.046 Sum_probs=479.2
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHH--------------
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVF-------------- 101 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-------------- 101 (767)
++-...++++.|.+.+.-+....+ .+..++..++.++.+.|+.++|.+.++++.+.. |.++...
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence 344556789999999988777654 578899999999999999999999999999886 3444332
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 102 --FVLISGYYKVGDCEKALESFGKMKEFDCQPDVY-IYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGL 178 (767)
Q Consensus 102 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (767)
..+.+.+...|++++|++.|+.+.... +|+.. ............|+.++|...++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334457888999999999999998754 44432 21111222234599999999999999875 55677888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--hhh-----------------HHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHH
Q 047305 179 SKSGKTEVAIKMLDEMTQRGILPN--KFT-----------------YTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV 239 (767)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~-----------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 239 (767)
...|+.++|+..++++........ ... +...+..+-.......|...+.+.......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999999876421100 001 1111111222223445555565554432233322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH-------
Q 047305 240 AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLY------- 311 (767)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~------- 311 (767)
. ......+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..+... ...|
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 2345667789999999999999988642 3678889999999999999999999999988754322 1112
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 312 -----GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 312 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
......+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.++++++..+ .+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 12345677899999999999999987543 667788899999999999999999999998765 45566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc
Q 047305 387 GMCRNGMVDDAQKLFNKMEKAGCF--------PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458 (767)
Q Consensus 387 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (767)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|+..|++.. ...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al--------------~~~P 492 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL--------------ALDP 492 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HhCC
Confidence 774 46789999988775432100 012245567778889999999999999986 3345
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS------- 531 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------- 531 (767)
.++..+..++..+...|++++|...++++.+..+ .+...+..+...+...++.++|+..++.+......++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 5677888999999999999999999999987643 24555555556677899999999999887543222221
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 532 --VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 532 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+..++..+...|+.++|+.+++. .+.+...+..+..++.+.|++++|+..|+++++..|+++.++..++.+
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~ 646 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV 646 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1234556778899999999999872 355667778899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh------HhHHHHHHHHHhc
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP------PSCVKLIHGLCKR 683 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 683 (767)
|...|++++|++.+..+. ...|+++..+..++.++...|++++|++++++++... ++++ .++..++.++...
T Consensus 647 ~~~~g~~~eA~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-~~~~~~~~~a~~~~~~a~~~~~~ 724 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-KSQPPSMESALVLRDAARFEAQT 724 (1157)
T ss_pred HHHCCCHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-ccCCcchhhHHHHHHHHHHHHHc
Confidence 999999999999998753 3468888889999999999999999999999998764 3222 4666789999999
Q ss_pred CChhHHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTLK 698 (767)
Q Consensus 684 g~~~~A~~~~~~~~~ 698 (767)
|+.++|+..|++++.
T Consensus 725 G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 725 GQPQQALETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999975
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=6.5e-27 Score=257.42 Aligned_cols=646 Identities=14% Similarity=0.033 Sum_probs=432.5
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 047305 42 KNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESF 121 (767)
Q Consensus 42 ~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 121 (767)
+++..|+..|+.+.+..| .+..++..+...+.+.|++++|...+++..+.+ |.+...+..+ ..+ +++.+|+.+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 677788888888877765 357777888888888888888888888887765 2333333333 222 7788888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHH
Q 047305 122 GKMKEFDCQPDVYIYNAVLNI--------AFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL-INGLSKSGKTEVAIKMLD 192 (767)
Q Consensus 122 ~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~ 192 (767)
+++.... +-+...+..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|+++.|+..+.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 8887654 3444455444444 4433 44555554 3222223344444444 778888888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHc-cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 047305 193 EMTQRGILPNKFTYTIVISGLCQ-INRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV- 270 (767)
Q Consensus 193 ~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 270 (767)
++.+.+.. +......+..+|.. .++ +++..+++. .++-+......++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 88887543 44446666667776 355 666666443 22346777778888888888888888888876543222
Q ss_pred CCcccHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 271 PRLGSYSCLIDGLFRAKRYD-EAYAWYRKMFEEKIEPDV-VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNA 348 (767)
Q Consensus 271 ~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (767)
|...++.-+ +.+.+... .|..-|.+ . ..++. ...-.++..+.+.++++.+.++.. +.|.... .
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~ 345 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--L 345 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--H
Confidence 333333333 33333321 11111111 0 01111 112234677778888886665522 2333332 2
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 047305 349 LIKGFC--DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA--GCFPSVGMFNALIDGLC 424 (767)
Q Consensus 349 l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 424 (767)
.++... ..+...++...+..+.+..+ -+......+.-...+.|+.++|..+++..... +..++......++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 333222 34667777777777776633 35555556666677899999999999988762 12234555668888888
Q ss_pred HcCC---HHHHHHHHHHhhc-----------CCCc--hhhhhhccCCCCcc--hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 425 KAGE---LEKANLLFYKMEI-----------GKNP--TLFLRLSQGGNRVH--DKASLQTMVEQYCTAGLIHKAYKILMQ 486 (767)
Q Consensus 425 ~~~~---~~~A~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (767)
+.+. ..++..+-..+.. +..+ ..+.... ...+. +...+..+..++.. ++.++|...+.+
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 8877 4444444221110 0000 0111111 22334 77788888888887 899999998888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 047305 487 LAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSP 566 (767)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 566 (767)
.... .|+......+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|..++++.++.+ +...
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 8776 355444444455567899999999999998665 4555567777888999999999999999998764 3333
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+.....+.|++++|...|+++++..|+ +..+..++.++.+.|++++|+..+.+.. ...|+++.++..++.++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL-ELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 44444444455669999999999999999996 8889999999999999999999998843 246999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
..|++++|++.++++++.. |.++.++..++.++...|++++|+..|+++++. .|+...+..-...+.....+ ++.|
T Consensus 655 ~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~-~~~a 730 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFN-FRRL 730 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHH-HHHH
Confidence 9999999999999999987 889999999999999999999999999999874 47765555444433324444 7777
Q ss_pred HHHHHHHH
Q 047305 727 YHLLCRMK 734 (767)
Q Consensus 727 ~~~~~~~~ 734 (767)
.+-+++..
T Consensus 731 ~~~~~r~~ 738 (987)
T PRK09782 731 HEEVGRRW 738 (987)
T ss_pred HHHHHHHh
Confidence 77766654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.1e-25 Score=247.78 Aligned_cols=617 Identities=11% Similarity=-0.002 Sum_probs=437.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH----
Q 047305 32 TTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG---- 107 (767)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~---- 107 (767)
..+.+.+...+++..|+..++-+.+..+ .+...+..+.. + ++++.|..+++++.... |.+..++..+...
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~-i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAA-I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHH-h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhcc
Confidence 3355666778899999999988877765 34444444322 2 89999999999999886 5566777666665
Q ss_pred ----HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 047305 108 ----YYKVGDCEKALESFGKMKEFDCQPDVYIYNAV-LNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSK-S 181 (767)
Q Consensus 108 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 181 (767)
|.+.+...++++ .......|........ .+.|.+.|+++.|+.++.++.+.+ +.+......|..+|.. .
T Consensus 156 ~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 156 NALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred chhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 666655555554 3222234455555555 899999999999999999999987 5566667777788887 4
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHH-HHHH
Q 047305 182 GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCS-PDFVAYNALLNGFCKLRRVD-EALA 259 (767)
Q Consensus 182 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~a~~ 259 (767)
++ +.+..++... ++-+...+..+...|.+.|+.++|.++++++...... |+..++..+ +.+.+... .+..
T Consensus 231 ~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~ 302 (987)
T PRK09782 231 LD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALA 302 (987)
T ss_pred CH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhcc
Confidence 77 7788876542 2348889999999999999999999999998654322 555554433 34444432 1111
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 047305 260 LLRSFEKDGFVPR-LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRG--LSEAGKVKDAMKLLSDMRE 336 (767)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 336 (767)
-|.+ . ..++ ......++..+.+.++++.+.++.. +.|.... ..++. ....+...++...++.|.+
T Consensus 303 ~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 303 NYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred chhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHh
Confidence 1111 0 1111 1123344777788888886655421 1222222 12222 2234667777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHH-----------
Q 047305 337 RGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRD--SLPNTHTFTILICGMCRNGM---VDDAQKL----------- 400 (767)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~----------- 400 (767)
.... +......+.-.....|+.++|..++....... ...+......++..|.+.+. ..++..+
T Consensus 371 ~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 371 QEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred cCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 5222 45555555555667788888888888877631 12344455567777776655 3333322
Q ss_pred -----------HHHHHHc-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHH
Q 047305 401 -----------FNKMEKA-GC-FP--SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQ 465 (767)
Q Consensus 401 -----------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (767)
....... +. ++ +...|..+..++.. +++++|+..+.+.... . ++.....
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------------~-Pd~~~~L 513 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------------Q-PDAWQHR 513 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------------C-CchHHHH
Confidence 1111111 11 23 56778888877776 8999999988776411 1 2222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 544 (767)
.++..+...|++++|...|+++... .|+...+..+..++...|+.++|...+++....+ |+. ..+..+...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 4555567899999999999998655 3444556677888899999999999999999874 333 3333444455566
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
|++++|...+++.++. .|+...+..+..++.+.|++++|+..|+++++..|+++.++..++.++...|++++|+..+.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999974 56788999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
+.. ...|+++.++..++.++...|++++|+..++++++.. |.+..+....+++..+..+++.|.+.+++... +.|+
T Consensus 668 ~AL-~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~ 743 (987)
T PRK09782 668 RAH-KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFD 743 (987)
T ss_pred HHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCcc
Confidence 842 2469999999999999999999999999999999987 77778888999999999999999999998865 3455
Q ss_pred HH
Q 047305 705 PR 706 (767)
Q Consensus 705 ~~ 706 (767)
..
T Consensus 744 ~~ 745 (987)
T PRK09782 744 SS 745 (987)
T ss_pred ch
Confidence 44
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-27 Score=226.28 Aligned_cols=447 Identities=15% Similarity=0.101 Sum_probs=347.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 241 YNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE 320 (767)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (767)
...|..-..+.|++++|++.-..+-..+ +.+......+-..+.+..+.++...--....+..+. -..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 3345555667778888877766554432 123333334445566666666665544444444322 45678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNT-HTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 399 (767)
.|++++|+.+++.+.+...+ ....|..+..++...|+.+.|...|.+.++.+ |+. ...+.+...+...|..++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876443 56778888888888888888888888887765 332 333444555566788888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHH
Q 047305 400 LFNKMEKAGCFPS-VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIH 478 (767)
Q Consensus 400 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (767)
.+.+..+.. |. ...|..|...+...|+.-.|+..|++.. .-.+.-...|..|...|...+.++
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--------------kldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--------------KLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh--------------cCCCcchHHHhhHHHHHHHHhcch
Confidence 887777653 33 4577888888888888888888888875 334455678888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD-SVTYGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
.|+..+.++....+ .....+..+...|..+|..+-|+..+++.++. .|+ ...|+.+.+++-..|++.+|.+.|.++
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99988888876632 24566777888899999999999999999976 555 458999999999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 558 PQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
+... +......+.|..+|...|++++|..+|.++++..|.-..+.++++..|.++|+.++|+..+.+.- .+.|.-..+
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda 424 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADA 424 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHH
Confidence 8853 44577888899999999999999999999999999999999999999999999999999999832 245888889
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLL 716 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~ 716 (767)
|+++|..|-..|+.+.|+..+.+++..+ |--.++...|+.+|-..|+..+|+.-|+.+++ ++||.+ .+..++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999999999999999999987 66677889999999999999999999999987 668854 4555666654
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.6e-23 Score=209.58 Aligned_cols=614 Identities=12% Similarity=0.033 Sum_probs=399.8
Q ss_pred cCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047305 75 KPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGD--CEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLA 152 (767)
Q Consensus 75 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 152 (767)
+...+..|..+|+.+-......++..+..-+- |...|. .+.|...|....+.. ++|+..+-.-.......+++..|
T Consensus 106 k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~a 183 (1018)
T KOG2002|consen 106 KDELFDKATLLFDLADKIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGA 183 (1018)
T ss_pred hHHHHHHHHHHhhHHHHhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHH
Confidence 33445566666665554433223322222222 222222 578888888777643 55554433333334456788888
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc---CCHhHHHHHHH
Q 047305 153 LAVYYEMVKLN--CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQI---NRADEAYRLFL 227 (767)
Q Consensus 153 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~ 227 (767)
..+|..+.... .+||+.+ .+...+.+.|+.+.|+..|++..+.+. .++.++..|...-... ..+..++.++.
T Consensus 184 l~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 88888866543 3344432 233566678888888888888887632 1333333333222222 23455666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 228 KMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV--PRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305 (767)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 305 (767)
..-... .-++...+.|...|.-.|++..+..+...+...... .-...|--+.++|-..|++++|...|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 554332 235667777888888888888888888877664311 11244667788888888888888888777766333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHH
Q 047305 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLG----LLDQARSLQVEIWKRDSLPNTHTF 381 (767)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 381 (767)
.-...+..+...+.+.|+++.+...|+...+... -+..+...+...|...+ ..+.|..++....+..+ .|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHH
Confidence 2233455677888888888888888888877632 25677777777776654 45667777776666543 566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 382 TILICGMCRNGMVDDAQKLFNKME----KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
-.+...+... ++..++.++..+. ..+..+.+...|.+...+...|.+++|...|......-.+..-.. .+.
T Consensus 418 l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d----e~~ 492 (1018)
T KOG2002|consen 418 LELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD----EGK 492 (1018)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc----ccc
Confidence 7666666544 3333366665543 344446777888888888888888888888887753311110000 111
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
..+...-..+...+-..++.+.|.+.+..+.+. .|+. ..|..++......+...+|...+......+ .-++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 122334556677777778888888888888776 3444 344444433345567788888888887653 235555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHh------------cCChhHHHHHHHHHHhccCCCccch
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLMTWSCR------------RRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
+.+.+.+...+..|..-|..+.+. ...+|..+..+|+..|.+ .+.+++|+++|.++++.+|.|..+-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 666777777777777766665542 123566666666665542 3568899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCChHhHHHHHHHHHh
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-ECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 682 (767)
+.++-+++..|++.+|..+|.++.... .+.+.+|.+++.+|...|+|-.|+++|+... +.....++.+...|+.+++.
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999999999999999998888865432 2455669999999999999999999999975 44545678888889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 683 RGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
.|.+.+|.+.+..++... |...+
T Consensus 729 ~~~~~eak~~ll~a~~~~--p~~~~ 751 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLA--PSNTS 751 (1018)
T ss_pred hhhHHHHHHHHHHHHHhC--Cccch
Confidence 999999999999887744 55443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-22 Score=207.53 Aligned_cols=624 Identities=12% Similarity=0.047 Sum_probs=436.1
Q ss_pred CCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHH--HhcCChhHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHHcCCHHH
Q 047305 76 PNGFDLYWQTLDELRSGNVSVVSDVFFVLISGY--YKVGDCEKALESFGKMKE--FDCQPDVYIYNAVLNIAFRKQLFLL 151 (767)
Q Consensus 76 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~ 151 (767)
..+++.|...|....... |++. ...+++++ ...++|..|+.+|..... ..++||+.+ .+..++.+.|+.+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEK 217 (1018)
T ss_pred CccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhh
Confidence 334678888888888765 3333 33444444 456899999999999764 344566544 44566789999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 152 ALAVYYEMVKLNCLPNIVTFSLLINGLSKS---GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 152 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
|...|.++.+.+ +.++.++..|.-.-... ..+..+..++...-.... -|+...+.|...|...|++..++.+...
T Consensus 218 a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999875 23333443333332222 345567777776665432 3788899999999999999999999998
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 229 MKDSGCS--PDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEP 306 (767)
Q Consensus 229 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (767)
+...... .-...|-.+.++|-..|++++|...|.+..+.......-.+--+..+|.+.|+++.+...|+.+.+..+.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~- 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN- 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-
Confidence 8765311 1233577799999999999999999998887542222344556789999999999999999999987544
Q ss_pred CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH
Q 047305 307 DVVLYGVMIRGLSEAG----KVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIW----KRDSLPNT 378 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 378 (767)
+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+-... ...+...+..+. ..+..+.+
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCH
Confidence 6677888888777765 5678888888877764 347888888888776544 444476666554 44555788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccC
Q 047305 379 HTFTILICGMCRNGMVDDAQKLFNKMEKA---GCFPSVG-MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQG 454 (767)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 454 (767)
...|.+...+...|+++.|...|...... ...++.. +.+ +..-...++..+..--+.... ..+..+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~--lt~~YNlarl~E~l~~~~~A~-----e~Yk~Il-- 523 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN--LTLKYNLARLLEELHDTEVAE-----EMYKSIL-- 523 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch--hHHHHHHHHHHHhhhhhhHHH-----HHHHHHH--
Confidence 99999999999999999999999998765 1223332 111 111111222222221111111 1111111
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhh
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVT 533 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 533 (767)
...+.-...+..++.+....+...+|...+....... ..++..+..+...+.+...+..|.+-|+.+... ...+|..+
T Consensus 524 kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 524 KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 1122333444444444445578889999999887664 336667777787888888888899888877754 22467777
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 534 YGTLINGLQR------------VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 534 ~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
...|.+.|.+ .+..++|+++|.++++.. +.+...-+.++-+++..|++.+|..+|.++.+.....++
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 7788887642 345678999999998764 557778888888899999999999999999988888999
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
+|.+++++|...|++-.|++.+.. +......+++.++..|+.++.+.|++.+|.+.+.+++... |.++.....++-+.
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVL 760 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHH
Confidence 999999999999999999999999 5444456677889999999999999999999999998886 66666544444333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCC
Q 047305 681 CKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYD 739 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~ 739 (767)
.+. |.. .++ . ...+...+.... ++ .++|..+|++|...+-.
T Consensus 761 kkl-----a~s----~lr-~---~k~t~eev~~a~----~~-le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKL-----AES----ILR-L---EKRTLEEVLEAV----KE-LEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHH-----HHH----HHh-c---ccccHHHHHHHH----HH-HHHHHHHHHHHHhcCCC
Confidence 322 111 221 1 123444444443 23 78999999999876543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-25 Score=217.97 Aligned_cols=452 Identities=14% Similarity=0.082 Sum_probs=369.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
...|..-..+.|++.+|++....+-..++. +....-.+-..+.+..+++.....-....+... .-..+|..+...+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 556777788899999999988877665432 333334444566666777766655544444322 256889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMF-NALIDGLCKAGELEKANL 434 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~ 434 (767)
.|++++|...++.+++..+ .....|..+..++...|+.+.|...|.+..+.+ |+.... ..+...+...|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999875 567889999999999999999999999988753 554433 344555666899999999
Q ss_pred HHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 047305 435 LFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNING 514 (767)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (767)
.+.+.. ...+.-..+|..|...+..+|+...|+..|+++.+..+. -...|..|...|...+.++.
T Consensus 206 cYlkAi--------------~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 206 CYLKAI--------------ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHHH--------------hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchH
Confidence 998875 234455678899999999999999999999999876322 34678899999999999999
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 515 ALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 515 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
|+..+.+.... .|+. ..+..+...|...|..+-|+..|+++++. .|+ +..|+.+..++...|+..+|...|.++
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999998876 5654 57788888899999999999999999984 454 779999999999999999999999999
Q ss_pred HhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 593 LRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
+...|..+++.++++.+|.+.|+.++|...+.+. ....|.-..+.++|+.+|..+|++++|+..|++++... |.-..+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHH
Confidence 9999999999999999999999999998887772 23568888899999999999999999999999999875 555778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc-chhhhh--
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC-LYPKTK-- 749 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~-- 749 (767)
+..+|..|-..|+.+.|++.|.+++. ++|.....+..++.+++..|+ ..+|..-++.... ++||.+ .|-.++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 99999999999999999999999987 558888888899999988998 9999999998774 467754 443332
Q ss_pred hhcCCCCcc
Q 047305 750 SLLPGPWNT 758 (767)
Q Consensus 750 ~~~~~~~~~ 758 (767)
--+.-+|.|
T Consensus 500 lq~vcdw~D 508 (966)
T KOG4626|consen 500 LQIVCDWTD 508 (966)
T ss_pred HHHHhcccc
Confidence 223456765
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=7.8e-19 Score=179.40 Aligned_cols=658 Identities=14% Similarity=0.084 Sum_probs=399.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 68 AVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 68 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
..+..+...|+++.|..++.++.+.. |..+..|..|...|-..|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 34445667799999999999999987 6788999999999999999999999988777655 677789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHccCCHhHHH
Q 047305 148 LFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTY----TIVISGLCQINRADEAY 223 (767)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~a~ 223 (767)
++.+|.-.|.++++.. +++....-.-...|-+.|+...|...|.++.+...+.|..-. -.+++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999986 556555556677889999999999999999987432222222 23456677778889999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCccc
Q 047305 224 RLFLKMKDS-GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV---------------------------PRLGS 275 (767)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~ 275 (767)
+.++..... +-..+...++.++..+.+...++.+......+...... ++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888662 22334557788889999999999998888777652111 12222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEK--IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
--+.-++......+....+........ +.-+...|.-+..++...|++.+|+.+|..+......-+...|..+.++|
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 122233344444444444455555554 34456678889999999999999999999999875555778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHH
Q 047305 354 CDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEK--------AGCFPSVGMFNALIDGLCK 425 (767)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 425 (767)
...|..++|.+.+..++...+ .+..+--.|...+.+.|++++|.+++..+.. .+..|+..........+.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999998865 5566777888899999999999999999642 2344555555667778888
Q ss_pred cCCHHHHHHHHHHhhcC------CCchhhh-h--hccCCCCcchHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHH
Q 047305 426 AGELEKANLLFYKMEIG------KNPTLFL-R--LSQGGNRVHDKASLQTMVEQYCTAGL-------IHKAYKILMQLAE 489 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~ 489 (767)
.|+.++-+.+-..+... .-|+.-. + ...................+-.+.++ .... ..+.-...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~-~~~~~~e~ 617 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG-TEFRAVEL 617 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch-hhhhhhhh
Confidence 99988866655544210 0000000 0 00001111111122222222221111 0011 11111111
Q ss_pred cCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-C
Q 047305 490 SGNLPDI--ITYNSLINGFCKVGNINGALKLFKELQLKGL--RPDS---VTYGTLINGLQRVDREEDAFRIFGQMPQN-G 561 (767)
Q Consensus 490 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 561 (767)
.+...+. ..+..++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|+.. +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1111111 1233445556666666666666665554321 1111 01122333445556666666666666542 1
Q ss_pred C--CCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 562 C--TPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR-DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 562 ~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
. .|. ...|+.....+.+.++-.-=...+..+....|.+ +......++.....+.+.-|+..+...-. ..|++|..
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~-~~pd~Pl~ 776 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR-QNPDSPLI 776 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-hCCCCcHH
Confidence 1 111 2233323333334443333333333344444544 22233345555556666666665555321 24555554
Q ss_pred hHHHHHHHhhc--C--------CHHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------
Q 047305 638 YTIWLIGLCQD--G--------QVKEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG------ 700 (767)
Q Consensus 638 ~~~l~~~~~~~--g--------~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 700 (767)
-..+|-++.+. + ..-++..++++..+.... ..-.+++.+|.+|-..|-..-|+.+|+++++..
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~ 856 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTD 856 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccc
Confidence 44444443322 1 123445555555443311 134566667777777777777777777776531
Q ss_pred C---CCC-HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 701 F---ILR-PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 701 ~---~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
. .-| .....+.+.-.++..|+ ..-|.+++++-
T Consensus 857 ~~~d~~dLrkeAA~NL~LIY~~SGn-~~lArqil~ky 892 (895)
T KOG2076|consen 857 PKEDNYDLRKEAAYNLHLIYKKSGN-MQLARQILEKY 892 (895)
T ss_pred ccCCcccHHHHHHhhhhhhhccCCc-HHHHHHHHHhh
Confidence 0 111 11233444445546665 77777776653
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.5e-20 Score=204.78 Aligned_cols=432 Identities=12% Similarity=-0.025 Sum_probs=296.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 240 AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLS 319 (767)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (767)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4566777888999999999999998875 466778888999999999999999999999887544 5678888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
..|++++|+..|......+...+. ....++..+.. ..+........+..+ .+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 999999999888776654322122 22222222211 223333333333322 11112222222 222111222221
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 047305 400 LFNKMEKAGCFPSV-GMFNALIDG---LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG 475 (767)
Q Consensus 400 ~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (767)
-+....+. .+.. ..+..+... ....+.+++|...|++... .....+.....+..+...+...|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~-----------~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALD-----------LGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----------cCCCChhhHHHHHHHHHHHHHcC
Confidence 12211111 1111 111111111 1234688899999888741 01123445567788888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 476 LIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
++++|...+++..+..+ .....|..+..++...|++++|+..|+++.+... .+...+..+...+...|++++|+..|+
T Consensus 346 ~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887632 2456778888888899999999999999887642 246678888888899999999999999
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC
Q 047305 556 QMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ 634 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~ 634 (767)
+.++.. +.+...+..++.++.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+ +.. .|..
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 988753 345667777888888999999999999999999999999999999999999999999888888 332 2432
Q ss_pred ccchH------HHHH-HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 635 LAPYT------IWLI-GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 635 ~~~~~------~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
...+. ..+. .+...|++++|+.+++++++.+ |.+..++..+++++...|++++|+..|+++++..
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22111 1122 2334689999999999998876 6677788889999999999999999999987643
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2e-20 Score=203.97 Aligned_cols=433 Identities=13% Similarity=-0.044 Sum_probs=277.8
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 047305 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGL 283 (767)
Q Consensus 204 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (767)
..+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|+..+++.++... .+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34556677788888888888888887764 56777788888888888888888888888877542 2456777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047305 284 FRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQAR 363 (767)
Q Consensus 284 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (767)
...|++++|..-|..+...+...+ .....++..+.. ..+........+.... +...+..+.. +......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcch
Confidence 888888888887776655432212 222222221111 1222223333222111 1111111111 21111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 364 SLQVEIWKRDSLPNTHTFTILICG---MCRNGMVDDAQKLFNKMEKAG-CFP-SVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
.-+....+..... ...+..+... ....+.+++|...|+...+.+ ..| ....+..+...+...|++++|+..|++
T Consensus 278 ~~~~~~~~~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 AGLEDSNELDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhccccccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111111100 0111111111 123467888888888887764 123 345677777788888888888888888
Q ss_pred hhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047305 439 MEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518 (767)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 518 (767)
.. ...+.....+..++..+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..
T Consensus 357 al--------------~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 357 SI--------------ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HH--------------HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 75 2344556677788888888888888888888887764 23567777788888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 519 FKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 519 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
|++....... +...+..+..++.+.|++++|+..++++++. .+.+..++..++.++...|++++|+..|+++++..|.
T Consensus 422 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 422 YQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 8888876322 4456677777888888888888888888764 2445677778888888888888888888888888776
Q ss_pred CccchHH------HHHHHHh-cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 599 RDDESMK------SIEEFLQ-KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 599 ~~~~~~~------l~~~~~~-~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
....+.. .+..+.. .|++++|+..+.+.. ..+|++..++..++.++...|++++|+.+|+++.+..
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl-~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL-IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 5544332 2333333 588888887777732 1357777778888888888888888888888887764
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.7e-20 Score=203.03 Aligned_cols=328 Identities=14% Similarity=-0.010 Sum_probs=146.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047305 350 IKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGEL 429 (767)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (767)
+..+.+.|++++|..++..++...+. +...+..++.+....|+++.|+..++++....+. +...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 33344444444444444444444332 1222223333333444444444444444443221 233444444444444444
Q ss_pred HHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047305 430 EKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKV 509 (767)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (767)
++|...++++. ...+.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...
T Consensus 127 ~~Ai~~l~~Al--------------~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~ 190 (656)
T PRK15174 127 ATVADLAEQAW--------------LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNK 190 (656)
T ss_pred HHHHHHHHHHH--------------HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHc
Confidence 44444444443 112223334444444444445555554444444333211 11122111 224445
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhH----H
Q 047305 510 GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSL----A 585 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A 585 (767)
|++++|...++.+......++......+..++...|++++|+..++++.+.. +.+...+..+..++...|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 5555555555554443222222223333444445555555555555554432 2234444445555555555543 4
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...|+++++..|+++.++..++..+...|++++|+..+.+.. ...|+++.++..++.+|...|++++|+..++++.+.+
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555555544421 1235555455555555555555555555555555443
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 666 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|.++..+..++.++...|+.++|+..|+++++
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333333344455555555555555555544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.4e-20 Score=203.88 Aligned_cols=333 Identities=10% Similarity=-0.009 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++. ...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l--------------~~~P~~ 109 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLL--------------AVNVCQ 109 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHH--------------HhCCCC
Confidence 344567778899999999999999887544 45566667778888999999999999986 344566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++.+...... +...+..+ ..
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 7788999999999999999999999998863 336678888999999999999999999988776332 22233333 34
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH--
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN-- 618 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-- 618 (767)
+...|++++|...++.+++....++...+..++.++.+.|++++|+..|+++++..|.++.++..++..+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 788999999999999988754334444555566778899999999999999999999999999999999999999986
Q ss_pred --HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 --AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 --A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
|+..+.+.. ...|+++.++..++.++...|++++|+..++++++.. |.++.++..++.+|...|++++|+..|+++
T Consensus 267 ~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHAL-QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777743 2469999999999999999999999999999999987 788889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 697 LKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++.+ |+...+.......+...|+ +++|...+++....
T Consensus 345 l~~~--P~~~~~~~~~a~al~~~G~-~deA~~~l~~al~~ 381 (656)
T PRK15174 345 AREK--GVTSKWNRYAAAALLQAGK-TSEAESVFEHYIQA 381 (656)
T ss_pred HHhC--ccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 8754 7765544443333447888 99999999998754
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.4e-19 Score=200.65 Aligned_cols=416 Identities=10% Similarity=0.002 Sum_probs=250.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 242 NALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA 321 (767)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (767)
.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++.+...+. +...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 333444444555555555555544311 122223445555555555555555555555444222 233344444445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 322 GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
|++++|+..++++.+.... +.. +..+..++...|+.++|...++++.+..+ .+...+..+...+...|..+.|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5555555555555443211 223 44444444455555555555555544433 22333333444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH-----HhcCC
Q 047305 402 NKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY-----CTAGL 476 (767)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~ 476 (767)
+.+.. .|+.. .-+ ........+... ...++
T Consensus 174 ~~~~~---~p~~~---~~l---------------------------------------~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 174 DDANL---TPAEK---RDL---------------------------------------EADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred HhCCC---CHHHH---HHH---------------------------------------HHHHHHHHHHhhcccccChhHH
Confidence 43332 12100 000 000011111111 12223
Q ss_pred H---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCC
Q 047305 477 I---HKAYKILMQLAES-GNLPDII-TY----NSLINGFCKVGNINGALKLFKELQLKGLR-PDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 477 ~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~ 546 (767)
+ ++|+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~ 287 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ 287 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC
Confidence 3 6788888888754 1122221 11 11133456779999999999999887532 332 22335778999999
Q ss_pred HHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---------------cchHHHHH
Q 047305 547 EEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---------------DESMKSIE 608 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------~~~~~l~~ 608 (767)
+++|+..|+++.+..... .......+..++.+.|++++|.+.++++.+..|... .+...++.
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 999999999987643111 134455666678899999999999999998877432 23456788
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 047305 609 EFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL 688 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 688 (767)
.+...|+.++|++.+.++.. ..|.++.++..++.++...|++++|++.++++++.. |.++..+..++..+...|++++
T Consensus 368 ~l~~~g~~~eA~~~l~~al~-~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAY-NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 89999999999999988543 369999999999999999999999999999999987 7888899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 689 AMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 689 A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
|...++++++.. |+......+-
T Consensus 446 A~~~~~~ll~~~--Pd~~~~~~~~ 467 (765)
T PRK10049 446 MDVLTDDVVARE--PQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHH
Confidence 999999998754 7776544433
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4e-21 Score=199.27 Aligned_cols=320 Identities=15% Similarity=0.069 Sum_probs=262.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---H
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD---I 496 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 496 (767)
...+...|++++|...|.++. ...+.+..++..++..+...|++++|..+++.+......++ .
T Consensus 42 g~~~~~~~~~~~A~~~~~~al--------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEML--------------KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHH--------------hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 445677899999999999996 22345667888999999999999999999999987532222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS----PAVYKSL 572 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l 572 (767)
..+..++..|...|++++|..+|+++.+.. .++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 467888999999999999999999998763 34567899999999999999999999999987643332 2244567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~ 651 (767)
+..+.+.|++++|...|+++++..|....++..++..+.+.|++++|++.+.++... .|.+ ...+..++.+|...|++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCH
Confidence 777889999999999999999999999989999999999999999999999995432 3443 34578999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc--CCccHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFS--KDNKKVHAYHL 729 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~a~~~ 729 (767)
++|...++++.+.. |+...+..++.++.+.|++++|..+++++++. .|+...+..++...... .|+ .+++..+
T Consensus 266 ~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~-~~~a~~~ 340 (389)
T PRK11788 266 AEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR-AKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc-chhHHHH
Confidence 99999999998875 45556689999999999999999999999875 48988888777776522 446 8899999
Q ss_pred HHHHHHcCCCCCCcchhhhhhhcCCCCcccc
Q 047305 730 LCRMKSVGYDLDACLYPKTKSLLPGPWNTRE 760 (767)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (767)
+++|...++.|++...-.-+......|...|
T Consensus 341 ~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c 371 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRCRNCGFTARTLYWHC 371 (389)
T ss_pred HHHHHHHHHhCCCCEECCCCCCCCccceeEC
Confidence 9999999999988755444666667776554
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=3.8e-16 Score=153.61 Aligned_cols=605 Identities=11% Similarity=0.046 Sum_probs=434.5
Q ss_pred CchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047305 78 GFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYY 157 (767)
Q Consensus 78 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 157 (767)
+...|..+|....+.+ |-++..|..-.+.--..|++..|..+..+-.+ .++.+...|---+ +....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 4567888888888777 45555565555555556777777666554333 2344444543332 3455666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCC
Q 047305 158 EMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILP-NKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSP 236 (767)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 236 (767)
..++.. +.++..|-..... ..+...=.+++...++. .| ++..|-. .......+.|.-++.+..+. ++.
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccc
Confidence 766643 3344444322221 12233334566666654 23 3333433 33455666688888888775 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHH
Q 047305 237 DFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMF----EEKIEPDVVLYG 312 (767)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~ 312 (767)
+.. |.-++.+..-++.|.+++.+..+. ++.+...|.+-...--..|+.+....++.+-+ ..|+..+...|-
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 333 445566777888888898888775 45577788877777778888888888876543 457777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPD--TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
.-...|-..|..--+..+....+..|+.-. ..||..-...|.+.+.++-++.+|...++..+ .+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 888888888888888888888887776532 47788888888888999999999888887654 456777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|..+....+|++....-. -....|......+...|+...|..++..+. ...+.+...+...+..
T Consensus 563 hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af--------------~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF--------------EANPNSEEIWLAAVKL 627 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH--------------HhCCCcHHHHHHHHHH
Confidence 8888888889988887632 255667777777888899999998888774 2334567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREED 549 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 549 (767)
......++.|..+|.+.... .|+...|..-+..-.-.++.++|++++++.++. .|+. ..|..+...+-..++.+.
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence 88889999999999988765 456666766666666778899999999888876 4554 467788888888889999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
|...|..-.+. ++.....|..+.+.=.+.|++-.|..++++..-.+|.+...|...+..-.+.|+.+.|...+.+. .+
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA-LQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA-LQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH-HH
Confidence 98888776653 45567788888888888889999999999999999999999999999999999999996555553 23
Q ss_pred CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP-RVC 708 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 708 (767)
..|.+...|..-++...+.++-.+++..+++. ..|+.++..++..+....++++|++-|+++++.+ ||. ++|
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 46888887888887777777766655555443 6788899999999999999999999999998865 664 456
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 709 NYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 709 ~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+++.+.+ ..|. -++-.+++.+...
T Consensus 855 a~fykfel-~hG~-eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFEL-RHGT-EEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHH-HhCC-HHHHHHHHHHHhc
Confidence 67777766 7775 4555667666553
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=8.5e-19 Score=194.41 Aligned_cols=416 Identities=11% Similarity=-0.012 Sum_probs=281.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIK 351 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 351 (767)
+.....-.+......|+.++|+.++.+..... ..+...+..+...+...|++++|..++++..+..+. +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44445555666667777777777777776532 224445677777777777777777777777665322 4555666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047305 352 GFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEK 431 (767)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (767)
.+...|++++|...++.+++..+ .+.. +..+...+...|++++|+..++++.+..+. +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 77777777777777777776643 3344 666677777777777777777777765432 44455556666666777777
Q ss_pred HHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-----
Q 047305 432 ANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF----- 506 (767)
Q Consensus 432 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----- 506 (767)
|+..++.... .|+ . ....+. .....++...
T Consensus 169 Al~~l~~~~~----------------~p~---~-------------~~~l~~-------------~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 169 ALGAIDDANL----------------TPA---E-------------KRDLEA-------------DAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHHhCCC----------------CHH---H-------------HHHHHH-------------HHHHHHHHhhccccc
Confidence 7776665530 011 0 000000 0011111111
Q ss_pred HhcCCH---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHH
Q 047305 507 CKVGNI---NGALKLFKELQLK-GLRPDSV-TYG----TLINGLQRVDREEDAFRIFGQMPQNGCT-PSPAVYKSLMTWS 576 (767)
Q Consensus 507 ~~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 576 (767)
...+++ ++|++.++.+... ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 122233 7788888888864 2233321 111 1133456779999999999999886522 222 223357789
Q ss_pred HhcCChhHHHHHHHHHHhccCCCc----cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-------------CC--ccc
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRD----DESMKSIEEFLQKGEVENAIQGLLEMDFKLND-------------FQ--LAP 637 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p-------------~~--~~~ 637 (767)
...|++++|+..|+++++..|.++ .....++.++.+.|++++|+..+.++... .| ++ ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHH
Confidence 999999999999999998877663 34456777889999999999998885432 23 22 234
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF 717 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 717 (767)
+..++.++...|++++|++.+++++... |.++..+..++.++...|++++|++.++++++. .|+.............
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHH
Confidence 5678889999999999999999999887 888999999999999999999999999999874 4886655554444443
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcch
Q 047305 718 SKDNKKVHAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 718 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 745 (767)
..|+ +++|..+++++... .|+....
T Consensus 439 ~~~~-~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 439 DLQE-WRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HhCC-HHHHHHHHHHHHHh--CCCCHHH
Confidence 7787 99999999999874 6666533
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=8e-16 Score=151.35 Aligned_cols=611 Identities=10% Similarity=-0.017 Sum_probs=476.2
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFG 122 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 122 (767)
+...|.-++.-+...+| .+...|-+-.+.=-..|.++.|..++.+--+. ++-+.++|..-++ ....+.|..+.-
T Consensus 266 DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHHHH
Confidence 46678888888877765 45556666666666788888888877665443 3567777766554 355667777777
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047305 123 KMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPN 202 (767)
Q Consensus 123 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 202 (767)
...+.- +.++..|--... -..+...=.+++.+.++. ++.++..|...+ ...+.+.|+.++.+..+. ++.+
T Consensus 340 ~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccch
Confidence 666532 444444433332 233444455677777765 355566665444 446677799999998885 2223
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCcccHHH
Q 047305 203 KFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF----EKDGFVPRLGSYSC 278 (767)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 278 (767)
.. |.-++.+...++.|..+++...+. ++-+..+|.+-...=-..|+.+...+++++- ...|+..+...|..
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33 344566777889999999999886 6668888888777777899999999888765 45688888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEP--DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDL 356 (767)
Q Consensus 279 li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (767)
=...|-..|..--+..+....+.-|+.- -..||+.-...|.+.+.++-|..+|....+-- +-+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc
Confidence 8889999999999999999988877653 23588999999999999999999999988863 33667777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047305 357 GLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLF 436 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 436 (767)
|..+.-..+++.++..-+ -....|.....-+-..|+...|..++..+.+.... +...|..-+.....+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999988754 34566777777888899999999999999887644 6778999999999999999999999
Q ss_pred HHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 047305 437 YKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 515 (767)
.+.. ...++..+|..-+...-..+..++|.+++++.++. -|+. ..|..+...+-+.++.+.|
T Consensus 642 akar---------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 642 AKAR---------------SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HHHh---------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 9884 34566778888888888889999999999999887 4443 5677888889999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 516 LKLFKELQLKGLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 516 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
.+.|..-.+. -|+ ...|..+...--+.|..-.|+.++++..-.+ +.+...|...+.+-.+.|+.++|..+..++++
T Consensus 705 R~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887665 444 4467777777778889999999999998664 56788999999998999999999999999999
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
..|.+...|..-+....+.++-.+++..+.+- ..++.++..++..+....++++|.+.|.++++.+ +..-.+|.
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa 855 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA 855 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHH
Confidence 99999999988888877777766655554443 3456668899999999999999999999999998 77788898
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
.+...+...|.-++-.+++.+.... +|..
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 8999999999999999999988653 3643
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=3.8e-16 Score=160.01 Aligned_cols=617 Identities=15% Similarity=0.057 Sum_probs=419.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEV 186 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 186 (767)
.....|++++|.+++.++++.. +.+...|.+|...|-..|+.+.+...+-.+.... +.|...|..+.....+.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3444599999999999999865 7788899999999999999999999887776655 5677889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYN----ALLNGFCKLRRVDEALALLR 262 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 262 (767)
|.-+|.+..+... ++....---+..|-+.|+...|.+-|.++.....+.|..-+. .+++.+...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999743 355555566788999999999999999998874332333233 34555667777799999998
Q ss_pred HHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHHHH
Q 047305 263 SFEKDG-FVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKI---------------------------EPDVVLYGVM 314 (767)
Q Consensus 263 ~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~l 314 (767)
.....+ -..+...++.++..+.+...++.|......+..... .++.... -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 887632 233556788999999999999999998888776211 1222221 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 315 IRGLSEAGKVKDAMKLLSDMRERG--IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
+-++......+....+........ +.-+...|.-+..++...|++.+|..++..+.......+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 222333334444444444455554 333467889999999999999999999999998877677889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYC 472 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (767)
.++.|...|+......+. +...-..|...+.+.|+.++|.+.+..+. +|+.- ........+...........+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~---~~D~~--~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII---NPDGR--NAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc---CCCcc--chhhccccHHHHHHHHHHHHHH
Confidence 999999999999886432 45566778888999999999999999875 12110 1122334455555666777788
Q ss_pred hcCCHHHHHHHHHHHHHcCC-----CC-----------------CHhhHHHHHHHHHhcCCHHHHHHHH------HHHHH
Q 047305 473 TAGLIHKAYKILMQLAESGN-----LP-----------------DIITYNSLINGFCKVGNINGALKLF------KELQL 524 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~-----~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~ 524 (767)
..|+.++=+.....|..... -| .......++.+-.+.++.....+-. .....
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 88887765555544443211 01 1111122233333333322211111 11111
Q ss_pred CCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 047305 525 KGLRPDS--VTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPA----VYKSLMTWSCRRRKFSLAFSLWLQYLRD-- 595 (767)
Q Consensus 525 ~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 595 (767)
.|+.-+. ..+..++.++.+.+++++|..+...+.... +..+.. .-...+.+....+++..|.+.++.++..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 2222222 245667788899999999999999988742 122222 2234455667899999999999999977
Q ss_pred ---cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 596 ---ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 596 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.|.....++.......+.|+-.--...+..+..+ .|++ +.....-|..+...+.+.-|+..|-++...+ |.+|-
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~-~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl 775 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK-NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPL 775 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcH
Confidence 5555555554444455556544444444443332 3444 5555566777788899999999999998886 67677
Q ss_pred hHHHHHHHHH--h--------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 672 SCVKLIHGLC--K--------RGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 672 ~~~~l~~~~~--~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+-..+|-++. . .-..-.+..++++-.+.-..-+.....|.++..+...|- ..-|...+++..+.
T Consensus 776 ~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl-~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 776 INLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL-VHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHhCC
Confidence 7666666554 1 122456777777665432222455566655554447887 88899999887754
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.8e-17 Score=179.47 Aligned_cols=448 Identities=12% Similarity=0.032 Sum_probs=246.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 178 LSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDE 256 (767)
Q Consensus 178 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (767)
..+.|+++.|+..|++..+.. |+. .....++..+...|+.++|+..+++.... ..........+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345555556665555555542 221 11114555555555555555555555421 01112222222344555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRE 336 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (767)
|+++++++.+.... +...+..++..+...++.++|+..++++... .|+...+..++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 55555555554322 2344444555555555555555555555544 23333333332223233444345555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047305 337 RGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMF 416 (767)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 416 (767)
..+. +...+..+..++.+.|-...|.++..+-... .+......| ..+.|.+..+- +..++.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l--------~~~~~a~~vr~----a~~~~~--- 258 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQL--------ERDAAAEQVRM----AVLPTR--- 258 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHH--------HHHHHHHHHhh----cccccc---
Confidence 4322 3444455555555555555555443321100 000111000 00111111110 100100
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHhhcCCCchhhhhhccCCCCcch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 417 NALIDGLCKAGEL---EKANLLFYKMEIGKNPTLFLRLSQGGNRVHD----KASLQTMVEQYCTAGLIHKAYKILMQLAE 489 (767)
Q Consensus 417 ~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (767)
....++ +.|+.-++.+.... ...++. .......+-++...|++.++++.++.+..
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~-----------~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRW-----------GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhc-----------cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 011122 23333333332100 011111 22334566777888999999999999987
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--
Q 047305 490 SGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL-----RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-- 562 (767)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 562 (767)
.+.+....+-..+.++|...+++++|..+++++..... .++......|..++...+++++|..+++++.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 76543344667788999999999999999999876431 11222346788899999999999999999986311
Q ss_pred ---------CC--C-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 047305 563 ---------TP--S-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL 630 (767)
Q Consensus 563 ---------~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (767)
.| + ...+..++..+...|++.+|++.+++++...|.|+.....++.++...|.+.+|.+.++.. ...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a-~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV-ESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhh
Confidence 11 1 1233344555777888888888888888888888888888888888888888887777443 234
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.|++..+....+.++...|++++|..+.+++.+.. |.++
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~-Pe~~ 518 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRS-PEDI 518 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC-CCch
Confidence 67777777888888888888888888888887775 5554
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=4.9e-19 Score=183.65 Aligned_cols=301 Identities=16% Similarity=0.091 Sum_probs=186.2
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN---IVTFSLLINGLSKSGK 183 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 183 (767)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666543 33445566666666666666666666666665421111 2345666666666777
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 047305 184 TEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYNALLNGFCKLRRVDEALA 259 (767)
Q Consensus 184 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 259 (767)
+++|..+|+++.+.. .++..++..++.++...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777766542 224556666677777777777777777776654322211 133445556666777777777
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 260 LLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339 (767)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (767)
.++++.+.. +.+...+..+...+.+.|++++|..+++++...++.....+++.++.+|...|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777776543 223445666667777777777777777777665333224456667777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 047305 340 VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR---NGMVDDAQKLFNKMEKAGCFPSVG 414 (767)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 414 (767)
|+...+..++..+.+.|++++|..+++++.+.. |+...++.++..+.. .|+..++..+++++.+.++.|++.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 344455667777777777777777777766653 566666666665553 446777777777777665555543
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.6e-17 Score=177.17 Aligned_cols=450 Identities=11% Similarity=0.025 Sum_probs=295.7
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH--HHHHHhcC
Q 047305 212 GLCQINRADEAYRLFLKMKDSGCSPDF--VAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCL--IDGLFRAK 287 (767)
Q Consensus 212 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~ 287 (767)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+...+..+ ...+...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcC
Confidence 445777777777777777765 3332 233 6666677777777777777777621 122223333 45666677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 288 RYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQV 367 (767)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 367 (767)
++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 777777777777776544 4555556667777777777777777777665 3344444334334434455555777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh
Q 047305 368 EIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL 447 (767)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (767)
++.+..+ .+...+..+.....+.|-...|.++.++-... -+...+..+- .+.|.+..+-... +
T Consensus 194 kll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~--------~~~~a~~vr~a~~---~-- 256 (822)
T PRK14574 194 EAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLE--------RDAAAEQVRMAVL---P-- 256 (822)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHH--------HHHHHHHHhhccc---c--
Confidence 7777653 45556666666667777776666555442211 0111111110 1111111111100 0
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG-NLPDI-----ITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
... ..+-+ --.+.|+.-++.+...- ..|.. ....-.+.++...|++.++++.|+.
T Consensus 257 -------~~~--~~~r~----------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 257 -------TRS--ETERF----------DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred -------ccc--chhhH----------HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000 00000 02355666666665421 11321 1222345677899999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-----CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (767)
+...+.+....+-..++++|...+++++|..+++.+.... ..++......|.-+|...+++++|..+++++.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988765444577889999999999999999999997642 12234445677888899999999999999999765
Q ss_pred CC------------Cc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 597 SG------------RD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 597 p~------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
|. ++ .....++..+...|+..+|.+.+.++. ...|.++..+..++.++...|+..+|+..++.+
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~-~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS-STAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 51 11 223356888889999999999999963 346999999999999999999999999999888
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 662 VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
.... |.+..+....+.++...|++++|..+..+.++.. |+......
T Consensus 477 ~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~ 522 (822)
T PRK14574 477 ESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQE 522 (822)
T ss_pred hhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHH
Confidence 8776 7788888899999999999999999999998744 77765444
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2e-15 Score=142.08 Aligned_cols=489 Identities=14% Similarity=0.083 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHH
Q 047305 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYT-IVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYN 242 (767)
Q Consensus 168 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 242 (767)
..+...|..-|.......+|+..++-+.+..+.|+...+. .+...+.+...+.+|++.|+..+..-...+. .+.+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3344445556666677888888888888777767655432 3455677778888888888877765222122 2334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHH
Q 047305 243 ALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE------------PDVVL 310 (767)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~ 310 (767)
.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4444566888899999888888774 467666666777777788888888888888765322 23222
Q ss_pred HHHHHHH-----HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 311 YGVMIRG-----LSEAG--KVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 311 ~~~l~~~-----~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
.+.-+.. .-+.+ +.++++-.-.+++.--+.|+- .. ..+-+.+.++.-.-..+..+. --.
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~---------g~dwcle~lk~s~~~~la~dl--ei~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA---------GCDWCLESLKASQHAELAIDL--EIN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc---------ccHHHHHHHHHhhhhhhhhhh--hhh
Confidence 2222211 11100 111111111111111111111 00 011111111111110000010 011
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchH
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLC--KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDK 461 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (767)
-...+.+.|+++.|+++++-+.+.+.+.-...-+.|-..+. .-.++..|.++-+... .....++
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al--------------n~dryn~ 490 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL--------------NIDRYNA 490 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh--------------cccccCH
Confidence 23357789999999999999887654433333333333322 2445667766665553 1222334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
.....-.......|++++|.+.+++.+.....-....|| +.-.+...|+.++|++.|-.+... +.-+..++..+.+.|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 444444445567899999999999998663332233343 344567899999999999888754 233667888899999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
.-..+..+|++++-+.... ++.++.++..+.+.|-+.|+-.+|.+.+-+..+-+|.+..+.-+++.-|....-+++|+.
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999888764 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccchHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 622 GLLEMDFKLNDFQLAPYTIWLIG-LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 622 ~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.+++... ..|.... |..++.. +.+.|+|++|.++|+..... +|.|..++..|++++...|. .+|.++-
T Consensus 648 y~ekaal-iqp~~~k-wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 648 YFEKAAL-IQPNQSK-WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHh-cCccHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 9988543 3466666 7666654 55679999999999999877 48999999999999888874 4444443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.4e-15 Score=136.75 Aligned_cols=465 Identities=17% Similarity=0.228 Sum_probs=265.8
Q ss_pred HhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCChhHH-HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047305 73 LLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG--YYKVGDCEKA-LESFGKMKEFDCQPDVYIYNAVLNIAFRKQLF 149 (767)
Q Consensus 73 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 149 (767)
+..+|.+..+.-+++.|++.|++.++.+-..|++. |....++--| .+.|-.|...| ..+..+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 45577888888888888888888887776666553 3333333222 23444555444 2222333 23333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 150 LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
.+ ++-+. .+.+..++.+||.++|+.-..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|
T Consensus 196 Ad---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred HH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 22 22222 245666778888888888778888888887777666677778887776543322 26777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHHC--
Q 047305 230 KDSGCSPDFVAYNALLNGFCKLRRVDE----ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDE-AYAWYRKMFEE-- 302 (767)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~-- 302 (767)
....+.||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 777778888888888888888776654 45666777777888888888877777777766533 44455554432
Q ss_pred --CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 303 --KI---EP-DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERG----IVPD---TYCYNALIKGFCDLGLLDQARSLQVEI 369 (767)
Q Consensus 303 --~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (767)
.. .| |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....+.....+.....++.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 12 33345566666777777777776665554321 2222 233455566666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhh
Q 047305 370 WKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFL 449 (767)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (767)
+-.-.-|+..+...++.+..-.|.++-.-+++.++...|.+-+......++..+++..- +|
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~---------------hp---- 485 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL---------------HP---- 485 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC---------------CC----
Confidence 76666667777777777777777777777777777765533233222222322322210 00
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 047305 450 RLSQGGNRVHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG-L 527 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 527 (767)
..+...-+...+.-+. -++.++. ..-.++.+..+ .....+.++..+.+.|..++|.+++..+.+.+ -
T Consensus 486 -------~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 486 -------LTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -------CChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 0010111111111100 0111111 11122333322 33445555666778888888888888875543 2
Q ss_pred CCChhhHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047305 528 RPDSVTYG---TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFS 587 (767)
Q Consensus 528 ~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (767)
-|.....+ -+++.-.+.+...+|...++-|...+.+.-...-+.+...|.-+....+|++
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 23344444 4445556677788888888888766544333345555555443333344443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.7e-16 Score=149.15 Aligned_cols=483 Identities=17% Similarity=0.113 Sum_probs=311.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 047305 97 VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYN-AVLNIAFRKQLFLLALAVYYEMVKLNCLP----NIVTF 171 (767)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 171 (767)
+-.++..|...|..+..+.+|+..|+-+.+...-|+.-.+. .+.+.+.+.+.+..|+++|...+..-... ...+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34455566777777888889999998888766666655432 34566778888999999888777652111 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHH--------HHH
Q 047305 172 SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVA--------YNA 243 (767)
Q Consensus 172 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~ 243 (767)
+.+.-.|.+.|+++.|...|+...+. .|+..+-..++-++...|+.++..+.|.+|...-..||..- -..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555577889999999999988775 57777766677777788898999999988875422222211 111
Q ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047305 244 LLNGFCKLR-----------RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYG 312 (767)
Q Consensus 244 l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (767)
|+.-..+.. +.++++-.-.++..--+.|+-. . -.+.+++.++.-....+..+.. -
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~---------g~dwcle~lk~s~~~~la~dle--i 423 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---A---------GCDWCLESLKASQHAELAIDLE--I 423 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---c---------ccHHHHHHHHHhhhhhhhhhhh--h
Confidence 222111111 1111211111221111111110 0 0122222222211110000110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD--LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
.-...+.++|+++.|.++++-+.+...+.-...-+.|...+.- -.++-.|.+.-+..+..+. -+......-.+.-..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeee
Confidence 1234578899999999999988877544333333433333332 3467777777666655432 233333333333456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|++++|...+++....+.......|+ +.-.+-..|+.++|+++|-++. .....+..++..+...
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh--------------~il~nn~evl~qiani 567 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLH--------------AILLNNAEVLVQIANI 567 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHH--------------HHHHhhHHHHHHHHHH
Confidence 799999999999998753322222232 3345677899999999998875 2234567788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 550 (767)
|....+...|++++.+.... ++.|+.....|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++|
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999887655 4557888888999999999998888876554433 344667888888888888888999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTW-SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
+.+|+++.- +.|+..-|..++.. +.+.|++.+|.++|....+.+|.+...+--++......|-
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999998764 68998888876654 5678999999999999999999998887777776666553
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.7e-14 Score=132.17 Aligned_cols=445 Identities=15% Similarity=0.179 Sum_probs=300.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 100 VFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ--LFL-LALAVYYEMVKLNCLPNIVTFSLLIN 176 (767)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~ 176 (767)
+=+.|+.. ..+|...++.-+|++|.+.|++.+...-..|++..+-.+ +.- .-++.|-.|.+.| ..+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 33445544 356889999999999999888888877666665543322 222 2234444454444 2233333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 177 GLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDE 256 (767)
Q Consensus 177 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (767)
+.|+..+ -+|+...+ +..++..+|.++|+.-..+.|.+++++......+.+..+||.+|.+-.- ..
T Consensus 191 ---K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ---ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 4455443 44444433 7889999999999999999999999999887778899999999887543 22
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEA----YAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD-AMKLL 331 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~ 331 (767)
..+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 378899999999999999999999999999987654 5677888999999999999999999998887644 44455
Q ss_pred HHHHHC----CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHH
Q 047305 332 SDMRER----GIV---P-DTYCYNALIKGFCDLGLLDQARSLQVEIWKRD----SLPN---THTFTILICGMCRNGMVDD 396 (767)
Q Consensus 332 ~~~~~~----~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~ 396 (767)
.++... .++ | |...|...+..|.+..+.+.|.++..-..... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332 222 2 44667778888889999999988766554321 1122 2346677788888899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 047305 397 AQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL 476 (767)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (767)
-...|+.|.-.-..|+..+...++++....+.++-.-+++.++.. +...-+
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-----------------------------~ght~r 467 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-----------------------------YGHTFR 467 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-----------------------------hhhhhh
Confidence 999999998777778888989999998889999888888887741 111112
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKV--GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIF 554 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 554 (767)
-+--.+++..+.+....|+...-..+-....+. .-.+.....-.++....+ .....+.++-.+.+.|.+++|.+++
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHH
Confidence 223345555555554444433222222222211 111222222334444433 3445666667788999999999999
Q ss_pred HHhhhCC-CCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 047305 555 GQMPQNG-CTPSPAV---YKSLMTWSCRRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 555 ~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (767)
....+.+ --|.... ...+++...+.+...+|..+++-++..+
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9885532 2233333 3456666677788889988888776543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=2.4e-18 Score=168.18 Aligned_cols=262 Identities=16% Similarity=0.094 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC-CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN-RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI 496 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (767)
.+...+.+.|++++|++++++... .. .+.+...+..+.......++.+.|...++++...+.. +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~-------------~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~ 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ-------------KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-------------cccccccccccccccccccccccccccccccccccccccc-cc
Confidence 446667777788888777754321 11 2345556666666777778888888888888766433 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTW 575 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 575 (767)
..+..++.. ...+++++|..++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..++.+
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 566666666 6889999999999887665 3466667788888999999999999999987532 35677888899999
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+.+.|+.++|+..|+++++..|+++.+...++..+...|+.+++.+.+...... .|.++..+..++.+|...|++++|+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999987777775433 2778888999999999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|+++.+.+ |.|+.+...+++++...|+.++|..+++++.+
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999999987 88999999999999999999999999998764
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-14 Score=139.68 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=218.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+........+-+...+++.+..++++.+. ...+.....+..-+.++...|+..+-..+-.++.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll--------------e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y 308 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL--------------EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY 308 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH--------------hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC
Confidence 44455555566666677777777776664 2334444455555556666666666666666666663
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS 571 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 571 (767)
+....+|-++..-|...|+..+|.+.|.+....+.. =...|.....++.-.|..++|+..+..+.+.- +-...-+-.
T Consensus 309 -P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LY 385 (611)
T KOG1173|consen 309 -PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLY 385 (611)
T ss_pred -CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHH
Confidence 336789999998898999999999999998865322 23578899999999999999999998887641 111111222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC---CC----CCccchHHHHHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL---ND----FQLAPYTIWLIG 644 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~p----~~~~~~~~l~~~ 644 (767)
+.--|.+.++++-|.++|.+++...|.+|.+...++-+....+.+.+|...|....... .+ ..| .+++||.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p-~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP-TLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH-HHHhHHHH
Confidence 33448889999999999999999999999999999999999999999998888832111 11 222 38999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
|.+.+++++|+..+++++... |.+..++..+|.+|...|+++.|++.|.+++. +.|+..+...++....
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999999999999999997 99999999999999999999999999999985 6799988777766544
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.5e-13 Score=126.26 Aligned_cols=479 Identities=10% Similarity=0.021 Sum_probs=312.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 167 NIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLN 246 (767)
Q Consensus 167 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (767)
+...|..-...=...+++..|.++|++.+.... .+...|...+..=.++.....|..++++....-...|. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 333444444444455677778888888877543 26666777777777888888888888888764222222 2333344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 247 GFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD 326 (767)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (767)
+=-..|++..|.++|+.-.+ ..|+...|.+.|..-.+-..++.|..+|+...-. .|++.+|-.....-.++|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44567888999999988877 4788889999999888888999999999888765 5788888888888888899999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 327 AMKLLSDMRER-GI-VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN-THTFTILICGMCRNGMVDDAQKLFNK 403 (767)
Q Consensus 327 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (767)
+..+|....+. |- ..+...++++...-.++..++.|.-+++-.+..-+... ...|..+...--+.|+........-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 98888887664 11 11234455555555566778888888887776643221 23343333333334443222211100
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 404 MEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKI 483 (767)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (767)
= +. --+++.. ...+.|-.+|...+..-...|+.+...++
T Consensus 306 K--------------------Rk-------~qYE~~v--------------~~np~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 306 K--------------------RK-------FQYEKEV--------------SKNPYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred h--------------------hh-------hHHHHHH--------------HhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 0 00 0011111 11223333444444444444444445555
Q ss_pred HHHHHHcCCCCCH--hhHH--------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCCHHH
Q 047305 484 LMQLAESGNLPDI--ITYN--------SLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----TLINGLQRVDREED 549 (767)
Q Consensus 484 ~~~~~~~~~~~~~--~~~~--------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~ 549 (767)
++.+...- +|-. ..|. ..+-.-....+++.+.++++..++. ++....||. ..+....+..+...
T Consensus 345 yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 345 YERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 55444331 2210 1111 1111123567888899999988874 222334443 33444567889999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
|.+++..++ |.-|...++...+..=.+.++++....+|++.++-.|.+-.++...+..-...|+.+.|..++.-...+
T Consensus 423 ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 423 ARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999999887 578899999999999889999999999999999999999999999999999999999997666653332
Q ss_pred CCCCCcc-chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-----hcC-----------ChhHHHHH
Q 047305 630 LNDFQLA-PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC-----KRG-----------YLDLAMDV 692 (767)
Q Consensus 630 ~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~ 692 (767)
..-+.|. .|-..+..-...|.+++|..+|++.++.. +...+|..++..-. ..| +...|+.+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~i 578 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKI 578 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHH
Confidence 2222222 35555556667899999999999999875 55558888776544 445 67789999
Q ss_pred HHHHHH
Q 047305 693 FLYTLK 698 (767)
Q Consensus 693 ~~~~~~ 698 (767)
|+++..
T Consensus 579 ferAn~ 584 (677)
T KOG1915|consen 579 FERANT 584 (677)
T ss_pred HHHHHH
Confidence 998865
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.7e-14 Score=137.46 Aligned_cols=421 Identities=13% Similarity=0.021 Sum_probs=246.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 244 LLNGFCKLRRVDEALALLRSFEKDGFVPR-LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG 322 (767)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (767)
..+-|.+.|++++|++.+.+.++. .|+ +..|.....+|...|+++++.+-.-+.++.++. -+..+..-..++-+.|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhhc
Confidence 445567778888888888887774 455 677778888888888888887777777765322 2334555556666677
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 047305 323 KVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKR-D--SLPNTHTFTILICGMCRNGMVDDAQ 398 (767)
Q Consensus 323 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (767)
++++|+.-..-..-. |+. |..+--.+=+.+- ..|.....+-.+. + ..|+.....+....+...
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~------- 264 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD------- 264 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-------
Confidence 777765433322211 111 2111111111111 1222222222221 1 123333222222222100
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH----H-cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch------HHHHHHH
Q 047305 399 KLFNKMEKAGCFPSVGMFNALIDGLC----K-AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD------KASLQTM 467 (767)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 467 (767)
.......+.......+..++. . ...+.+|...+.+-....... ......| ..+....
T Consensus 265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~-------~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS-------LSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh-------ccccccchhHHHHHHHHHHh
Confidence 000000001111111111111 1 112344444333321100000 0000011 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
+..+.-.|+.-.|..-|+..+.....++ ..|-.+..+|....+.++....|+...+.+.. ++.+|..-...+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 3334456788888888888877754432 23667777888888888888888888877543 667777777777777888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-h
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-M 626 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~ 626 (767)
++|..-|++.+... +.+...|..+.-+..+.++++++...|+++.+.+|.-+.+++..+.++..++++++|++.+.. +
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88888888888743 234445555555556778888888888888888888888888888888888888888888877 4
Q ss_pred hhcCCCC------CccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 627 DFKLNDF------QLAPYTIWLIGLC-QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 627 ~~~~~p~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+.. |. ++..+..-+-+.. -.+++..|+.++.++.+.+ |...-++..|+..-...|+.++|+++|++...
T Consensus 490 ~LE--~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELE--PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhc--cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 432 44 4443433333222 2478888888888888887 67777888888888888888999988888764
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.6e-16 Score=155.28 Aligned_cols=291 Identities=13% Similarity=0.017 Sum_probs=239.3
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL--PDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 504 (767)
=+..+|+..|.++. .....+..+...++.+|...+++++|.++|+.+.+..+. .+...|...+.
T Consensus 333 y~~~~A~~~~~klp--------------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 333 YNCREALNLFEKLP--------------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHhhH--------------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 35678888888854 223345577888999999999999999999999876321 25566666654
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChh
Q 047305 505 GFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFS 583 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 583 (767)
-+ .+.-+---+-+.+.+.. +-.+.+|..+.++|.-.++.+.|++.|+++++. .| ...+|..++.-+....++|
T Consensus 399 HL---q~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 399 HL---QDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HH---HhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHH
Confidence 33 22222222334444442 335679999999999999999999999999984 45 6778888888899999999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.|...|+.++..+|.+-.+|+.++.+|.++++++.|.-.+++. ..+.|.+......++.++-+.|+.++|+.+++++..
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh-hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999996666653 457899999999999999999999999999999999
Q ss_pred cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCC
Q 047305 664 CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDA 742 (767)
Q Consensus 664 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 742 (767)
.+ +.|+-+....+.++...+++++|...+++..+ +-|+....++++.-.+++.|+ .+.|+.-+-.+.+.+-++..
T Consensus 552 ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~-~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LD-PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGN-TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHcc-chHHHHhhHHHhcCCCccch
Confidence 98 89999999999999999999999999999976 569999999999888888888 89999988888876544433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.9e-14 Score=131.88 Aligned_cols=363 Identities=10% Similarity=-0.064 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHH
Q 047305 340 VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG--MFN 417 (767)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 417 (767)
..|...+-.....+.+.|....|+..+...+..-+ ..-..|..|... ..+.+.+.. +...+ ..+.. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e~~~~----l~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIEILSI----LVVGL-PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHHHHHH----HHhcC-cccchHHHHH
Confidence 33555555555556667777778877777665432 233333333222 222222222 11111 11111 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL--PD 495 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 495 (767)
-+..++......++++.-.+... .-+.+.....-+..+.+.-...++++|+.+|+++.+..+- .|
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~-------------~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~d 298 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLS-------------SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDD 298 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchh
Confidence 23344555556666665555542 1223444445555566666778888888888888776332 24
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
..+|..++-. +..+ ..+.++.+-...=-+..+.|...+.+.|+-.++.++|..+|+++++.+ +.....|..++.-
T Consensus 299 mdlySN~LYv--~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHE 373 (559)
T KOG1155|consen 299 MDLYSNVLYV--KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHE 373 (559)
T ss_pred HHHHhHHHHH--Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHH
Confidence 5566655533 2221 222222222211113345677778888888889999999999998864 4456677777788
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
|...++...|++.|+.+++.+|-|-.+|+.++.+|...+-+.=|+-.+++.. ...|.++..|..||.+|.+.++.++|+
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999888877777732 245999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCccHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN----GFILR-PRVCNYLLRSLLFSKDNKKVHAYHLL 730 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~ 730 (767)
..|+++...+ .-+..+++.|++.|.+.++.++|..+|++-++. |...+ -.-....++.+..+.++ +++|....
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-~~~As~Ya 530 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-FDEASYYA 530 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-hHHHHHHH
Confidence 9999999887 567788999999999999999999999988763 22222 12222234444435555 66665544
Q ss_pred HH
Q 047305 731 CR 732 (767)
Q Consensus 731 ~~ 732 (767)
.+
T Consensus 531 ~~ 532 (559)
T KOG1155|consen 531 TL 532 (559)
T ss_pred HH
Confidence 44
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.3e-14 Score=133.73 Aligned_cols=221 Identities=12% Similarity=0.066 Sum_probs=181.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
+.-.|+.-.|..-|+..+.....++.. |..+...|....+..+....|.++...+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445788999999999999875443332 7788888999999999999999998865 45677888888888888999999
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
..-|++++..+|++..++..++-+..+.+++++++..|.+...+ .|..+..|+..+.++..++++++|++.|+++++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999996544 69999999999999999999999999999998875
Q ss_pred CCC------ChHhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 666 AIV------TPPSCVKLIHG-LCKRGYLDLAMDVFLYTLKNGFILRPRVCN-YLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 666 ~~~------~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
+. ++..+.+-+-+ +...+++..|..+++++++.+ |...... .+....+ +.|+ .++|.++|++-.
T Consensus 493 -~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~l-Q~~~-i~eAielFEksa 564 (606)
T KOG0547|consen 493 -PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFEL-QRGK-IDEAIELFEKSA 564 (606)
T ss_pred -cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHH-HHhh-HHHHHHHHHHHH
Confidence 33 44444443333 235699999999999998744 6655533 3555555 8887 999999999854
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.4e-14 Score=149.15 Aligned_cols=290 Identities=13% Similarity=0.040 Sum_probs=195.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch-HHHHHHH
Q 047305 390 RNGMVDDAQKLFNKMEKAGCFPSV-GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD-KASLQTM 467 (767)
Q Consensus 390 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 467 (767)
..|+++.|.+.+.+..+.. |++ ..+.....+..+.|+++.|...+.+... ..+.+ .......
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~--------------~~p~~~l~~~~~~ 159 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAE--------------LAGNDNILVEIAR 159 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCCcCchHHHHHH
Confidence 4677777777777666543 332 2333445566667777777777777631 11111 1233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHh
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----TLINGLQR 543 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 543 (767)
...+...|+++.|...++.+.+..+ .+...+..+...+...|++++|.+.+..+.+.++. +...+. ........
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888777643 25667778888888888998888888888887644 332221 11111122
Q ss_pred cCCHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH--HHHHHhcCCHHH
Q 047305 544 VDREEDAFRIFGQMPQNG---CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVEN 618 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~ 618 (767)
.+..+++.+.+..+.+.. .+.++..+..++..+...|++++|.+.+++.++..|++....... .......++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 333333344555554432 124778888888899999999999999999999999887653222 222334577777
Q ss_pred HHHHHHHhhhcCCCCCc--cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQL--APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.+.+++.. +..|+++ ....++|+++.+.|++++|.+.|+++......|++..+.+++..+.+.|+.++|.++|+++
T Consensus 318 ~~~~~e~~l-k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQA-KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHH-HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 766666632 3468888 8788999999999999999999996443333678888889999999999999999999987
Q ss_pred HH
Q 047305 697 LK 698 (767)
Q Consensus 697 ~~ 698 (767)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.8e-13 Score=126.99 Aligned_cols=386 Identities=13% Similarity=0.004 Sum_probs=268.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--H
Q 047305 303 KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTH--T 380 (767)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 380 (767)
+...|...+-...-.+.+.|....|.+.|......- +-.-..|..|...+ .+.+.+.. ... +...+.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHH
Confidence 334466666666666778899999999998887652 22445555444432 22222222 111 1211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
=-.+..++....+.+++..-.+.....|...+...-+....+.-...++++|+.+|+++... .| -...+
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DP----------YRl~d 298 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DP----------YRLDD 298 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CC----------Ccchh
Confidence 12334556666688888888888888887766666666666677888999999999998633 22 12234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
..+|...+-+-..... +..+.+-.-.-.+-.+.|...+.+-|.-.++.++|+..|+...+.+.+ ....|..+..-
T Consensus 299 mdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHE 373 (559)
T KOG1155|consen 299 MDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHE 373 (559)
T ss_pred HHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHH
Confidence 4555554433322111 111111111101223456667778888899999999999999987533 44578888899
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|...++...|++-++.+++.+ +-|-..|-.++.+|.-.+...-|.-+|+++.+.-|+|+..+..++.+|.+.++.++|+
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999864 5578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH----cCC--CCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE----CKA--IVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
+.+.+.-.-.+. +..++..|+..|-+.++.++|..+|++-++ .|. +....+...|+.-+.+.+++++|..+..
T Consensus 453 KCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999995433233 345699999999999999999999999765 221 2234455557778889999999988776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 695 YTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.... | +.-.+||..++++++.
T Consensus 532 ~~~~-~-------------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 532 LVLK-G-------------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhc-C-------------------CchHHHHHHHHHHHHH
Confidence 6542 1 1125777778777764
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=4.6e-14 Score=145.22 Aligned_cols=291 Identities=12% Similarity=-0.024 Sum_probs=218.4
Q ss_pred HHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047305 424 CKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLI 503 (767)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 503 (767)
...|+++.|.+.+.+.. ...+.....+..........|+.+.|.+.+.++.+....+.........
T Consensus 95 ~~~g~~~~A~~~l~~~~--------------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNA--------------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HhCCCHHHHHHHHHHHh--------------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 45799999999998764 1122234445566788889999999999999988764333333334457
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH-HHHHH---HHhc
Q 047305 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK-SLMTW---SCRR 579 (767)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~ 579 (767)
..+...|+++.|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+. .-... ....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999988533 5567888899999999999999999999987643 333332 11111 1233
Q ss_pred CChhHHHHHHHHHHhccC----CCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch--HHHHHHHhhcCCHHH
Q 047305 580 RKFSLAFSLWLQYLRDIS----GRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY--TIWLIGLCQDGQVKE 653 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~ 653 (767)
+..+++.+.+.++.+..| .++.....++..+...|++++|.+.+.+... ..|++.... ..........++.+.
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-KLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCCcccchhHHHHHhhhcCCCChHH
Confidence 344445556777777666 5888889999999999999999999999432 246665422 233333445688999
Q ss_pred HHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTP--PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLC 731 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~ 731 (767)
+++.+++..+.. |.|+ .....+|+++.+.|++++|+++|+++......|++..+.++...+. +.|+ .++|.++++
T Consensus 318 ~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~-~~g~-~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD-QAGD-KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH-HcCC-HHHHHHHHH
Confidence 999999999886 8888 8888999999999999999999995443345699988887777776 8888 999999999
Q ss_pred HHH
Q 047305 732 RMK 734 (767)
Q Consensus 732 ~~~ 734 (767)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 864
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.1e-15 Score=147.91 Aligned_cols=283 Identities=18% Similarity=0.077 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYC 472 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (767)
+..+|+..|..+..+- .-+......+..+|...+++++|..+|+.+.... .-...+.+.|.+.+..+-
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~-----------p~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE-----------PYRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHH
Confidence 5678888888865542 2345677788889999999999999998885221 123345556655554432
Q ss_pred hcCCHHHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 047305 473 TAGLIHKAYKILM-QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 473 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 550 (767)
+ +-++..+. .+.+. .+-.+.+|-++..+|.-+++++.|++.|++.+.. .| ...+|..+..-+.....+|.|
T Consensus 402 ~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 402 D----EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred h----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhH
Confidence 2 12233332 33333 2446789999999999999999999999999976 44 566888888888889999999
Q ss_pred HHHHHHhhhCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 551 FRIFGQMPQNGCTPSPAVY---KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
...|+.++. .++..| ..++.+|.+.++++.|.-.|+++++.+|.+......++..+.+.|+.++|+..+.+.-
T Consensus 475 ~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 475 MKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999974 344444 4556679999999999999999999999999999999999999999999998888842
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
..+|.++..-...+.++...+++++|+..++++.+.- |.+..++..+|.+|.+.|+.+.|+..|--|....
T Consensus 551 -~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 551 -HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred -hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 2468888889999999999999999999999999885 8888999999999999999999999999886643
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.7e-11 Score=116.79 Aligned_cols=441 Identities=12% Similarity=0.057 Sum_probs=245.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHhHHH
Q 047305 145 RKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRADEAY 223 (767)
Q Consensus 145 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~ 223 (767)
.++++..|..+|++.+... ..+...|..-+.+=.++.....|..+|++.... -|.+ ..|-..+..=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3444444555555554432 333344444444444445555555555554442 1211 11222222223345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047305 224 RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE- 302 (767)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 302 (767)
++|++..+ ..|+...|.+.++.=.+-+.++.|..+++..+-. .|++..|......-.++|...-|..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 55555444 2455555555555555555555555555555432 345555555555555555555555555544432
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHh
Q 047305 303 KI-EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD--TYCYNALIKGFCDLGLLDQARS--------LQVEIWK 371 (767)
Q Consensus 303 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~ 371 (767)
|- .-+...+++....-..+..++.|.-+|+-.... ++.+ ...|..+...--+-|+...... -++..++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 001222333333333444555555555555543 1112 2223333222223333222222 1333444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHhhc
Q 047305 372 RDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSV--GMFNALI--------DGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~A~~~~~~~~~ 441 (767)
.++ .|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|...| -.-....+.+.+.++|+....
T Consensus 317 ~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 443 45566666666666677777777777777653 33311 1222211 112345777788888877642
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
- .| ...-.-...|...+....++.++..|.+++..++.. .|...++...|..-.+.++++.+..+++.
T Consensus 395 l-IP---------HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 395 L-IP---------HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred h-cC---------cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 01 000112334555566667888999999999887754 67788888888888899999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD 600 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 600 (767)
.+..++. +-.+|...+..-...|+.+.|..+|..++... .......+...++-=...|.++.|..+|+++++..+.-.
T Consensus 463 fle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 463 FLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 9988644 66788888887788899999999999998643 222344667777777788999999999999998766554
Q ss_pred cchHHHHHH
Q 047305 601 DESMKSIEE 609 (767)
Q Consensus 601 ~~~~~l~~~ 609 (767)
++...+..
T Consensus 542 -vWisFA~f 549 (677)
T KOG1915|consen 542 -VWISFAKF 549 (677)
T ss_pred -HHHhHHHH
Confidence 55554433
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=9.5e-10 Score=109.22 Aligned_cols=574 Identities=12% Similarity=0.062 Sum_probs=302.0
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 047305 95 SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL-NCLPNIVTFSL 173 (767)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 173 (767)
.|+...|-.+=++ ++.++-...+|. ..|-..+..+.++|++..-...|+..+.. .+.....+|..
T Consensus 78 ~~T~~~~~~vn~c------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~l 143 (835)
T KOG2047|consen 78 CPTDPAYESVNNC------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDL 143 (835)
T ss_pred CCCChHHHHHHHH------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHH
Confidence 3444445444333 344555555444 35666777777888888888888777654 33344556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHH
Q 047305 174 LINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSG------CSPDFVAYNALLNG 247 (767)
Q Consensus 174 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~ 247 (767)
.+......|-++.+..++++.++. ++..-+..|..++..+++++|.+.+...+... .+.+...|..+.+.
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 777777778888888888888775 45556777777888888888888887765321 12234456666665
Q ss_pred HHhcCCHHH---HHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 248 FCKLRRVDE---ALALLRSFEKDGFVPR--LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG 322 (767)
Q Consensus 248 ~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (767)
.++.-+.-. ...+++.+... -+| -..|++|..-|.+.|.+++|..+|++.+.. ..+..-|..+..+|++-.
T Consensus 220 is~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 555443322 23333433332 223 256788888888888888888888887765 223333444444444321
Q ss_pred C----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 323 K----------------------VKDAMKLLSDMRERG-----------IVPDTYCYNALIKGFCDLGLLDQARSLQVEI 369 (767)
Q Consensus 323 ~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (767)
. ++-.+.-|+.+...+ -+-+...|..-+.. ..|+..+...++.++
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHH
Confidence 1 111112222222111 00112222221111 123344444444444
Q ss_pred HhCC-CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 047305 370 WKRD-SL----PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS---VGMFNALIDGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 370 ~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 441 (767)
++.- +. .-...|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++.++...
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 4321 00 1123345555555555555555555555544322111 12333333444444555555555544421
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
-..+ +. ..+...+..-++ ....+...|...++.--..|-++....+++.
T Consensus 454 vP~~---------------~~------~~~yd~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 454 VPTN---------------PE------LEYYDNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred CCCc---------------hh------hhhhcCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1000 00 000000000000 0011334566666666667778888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHh---cCChhHHHHHHHHHHhccC
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCR---RRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p 597 (767)
+++..+- ++......+..+-....++++.++|++-+..-..|+ ...|+..+.-+.+ ..+++.|..+|+++++..|
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8876554 343344444455566667788888877766422333 2344444444332 2477888888888888777
Q ss_pred CCccchHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCC--
Q 047305 598 GRDDESMKS--IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD----GQVKEALNIFSVLVECKAIVT-- 669 (767)
Q Consensus 598 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~-- 669 (767)
+...-...+ +..-.+.|-...|++++.+......+.+ ...|-++|.+. =-...-.++|+++++. +|.+
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~---~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~ 657 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ---RLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKA 657 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHH
Confidence 544333322 3333456777788888887654433332 23333333322 1233445677777765 2333
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHHHHHHH
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHAYHLLC 731 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~ 731 (767)
......+++.-.+.|..+.|+.+|....+- ..|. ...|...-.+=. +.|+ -+-..+|++
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEv-rHGn-edT~keMLR 718 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEV-RHGN-EDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHH-hcCC-HHHHHHHHH
Confidence 223455677777889999999988876542 2222 334555444444 6776 455555543
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=1.2e-13 Score=141.16 Aligned_cols=284 Identities=12% Similarity=0.016 Sum_probs=178.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchH--HHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNAL-IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDK--ASLQTM 467 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 467 (767)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+++.|...+.++.. ..++. ......
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---------------~~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---------------LADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------cCCcchHHHHHHH
Confidence 466666666555544431 122222222 3333566666666666666531 11111 111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-------VTYGTLING 540 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~ 540 (767)
...+...|+++.|...++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777776666642 25566667777777788888888888887776543222 122223333
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
.....+.+...++++.+.+. .+.++.....++..+...|+.++|...+++.++. |.++... ........++.++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHH--HHHhhccCCChHHHH
Confidence 33344455556666665442 3456777777888888888888888888888874 3344222 233333458888887
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+.+++... ..|+++..+..++.++.+.|++++|.+.|+++.+. .|+...+..++.++.+.|+.++|..+|++.+..
T Consensus 315 ~~~e~~lk-~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 315 KVLRQQIK-QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777442 35888888888888888888888888888888876 466777778888888888888888888887653
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=2.1e-16 Score=154.48 Aligned_cols=258 Identities=16% Similarity=0.112 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESG-NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 544 (767)
.+...+...|++++|+++++...... ...+...|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655543 2335556666667777899999999999999987533 45567777766 688
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--CCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--SGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
+++++|..++....+. .+++..+..++..+.+.++++++.++++++.+.. +.++..+..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 3566777788888999999999999999977544 66777788899999999999999999
Q ss_pred HHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047305 623 LLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF 701 (767)
Q Consensus 623 ~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 701 (767)
+.+ +. ..|+++.+...+++.+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|...|+++.+..
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 998 44 359999999999999999999999999999998876 8888899999999999999999999999998854
Q ss_pred CCCHHHHHH-HHHHHhhcCCccHHHHHHHHHHHH
Q 047305 702 ILRPRVCNY-LLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 702 ~~~~~~~~~-l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+++.+.. +...+. ..|+ .++|..+.++..
T Consensus 245 -p~d~~~~~~~a~~l~-~~g~-~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALE-QAGR-KDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT------------------
T ss_pred -ccccccccccccccc-cccc-cccccccccccc
Confidence 76555444 555554 8888 999999988764
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.2e-12 Score=125.93 Aligned_cols=280 Identities=13% Similarity=0.053 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTL 537 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 537 (767)
.+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+. .| ...+|..+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence 456677777888889999999999999998774 345556666677888999988888888888876 34 45689999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.-.|...|+..+|+++|.+....+ +.=...|..++..|.-.|+.|+|...|..+-+.+|........++.-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 988988999999999999997643 2336688889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC---CC---ChHhHHHHHHHHHhcCChhHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA---IV---TPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.|.+.+.. ...+.|.+|..++-+|-+.+..+.|.+|..+|++++..-. +. -..+++.||.+|.+.+++++|+.
T Consensus 398 LAe~Ff~~-A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQ-ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH-HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99666655 2346799999999999999999999999999999873210 11 23458899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhhh
Q 047305 692 VFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKT 748 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 748 (767)
.+++++... |.+...+.-++..+.-.|+ ++.|.+.+.+.. ++.||..+...+
T Consensus 477 ~~q~aL~l~--~k~~~~~asig~iy~llgn-ld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 477 YYQKALLLS--PKDASTHASIGYIYHLLGN-LDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred HHHHHHHcC--CCchhHHHHHHHHHHHhcC-hHHHHHHHHHHH--hcCCccHHHHHH
Confidence 999999854 5554444433333325676 899999888866 456776554444
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.3e-13 Score=140.98 Aligned_cols=283 Identities=13% Similarity=0.018 Sum_probs=216.2
Q ss_pred cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH--HH
Q 047305 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKAS-LQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN--SL 502 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l 502 (767)
.|+++.|.+.+..... ....+.. +..........|+++.|...+.++.+. .|+..... ..
T Consensus 97 eGd~~~A~k~l~~~~~---------------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD---------------HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHh---------------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 6999999988876531 1112233 333455558999999999999999876 34433222 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-------hHHHHHHH
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-------VYKSLMTW 575 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~ 575 (767)
...+...|+++.|...++.+.+.... +......+...|.+.|++++|..++..+.+.+..++.. +|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999987533 55678888999999999999999999999875443221 22333333
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
.....+.+...++++...+..|.++.+...++..+...|+.++|.+.+.+.... |.++. ..+..+....++.++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHH
Confidence 334455667777777777777889999999999999999999999999885332 44443 22334444569999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+..++..+.. |.|+..+..++..+.+.|++++|+++|+++++. .|++..+..+...+- ..|+ .++|..++++-..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~-~~g~-~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD-RLHK-PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHh
Confidence 9999999987 889999999999999999999999999999875 499887676666665 8888 9999999998654
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.67 E-value=3.8e-11 Score=121.83 Aligned_cols=512 Identities=12% Similarity=0.006 Sum_probs=237.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 047305 111 VGDCEKALESFGKMKEFDCQPDVYIYNAVLNI---AFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVA 187 (767)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 187 (767)
.+..++++.-+......++..+..++..+... +...++.+++ ++-..+.....|...++.+.+..
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 45566677777666666666666665554433 2233444444 22222221112221111111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047305 188 IKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD 267 (767)
Q Consensus 188 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (767)
...+.++....+..+...|..+.-++.+.|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++.....
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 01222233333344566666666666677777777777777654322 24455666666666677766777777665543
Q ss_pred CCCCCc-ccHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 047305 268 GFVPRL-GSYSCLIDGLF-RAKRYDEAYAWYRKMFEE--KI--EPDVVLYGVMIRGLSEA-----------GKVKDAMKL 330 (767)
Q Consensus 268 ~~~~~~-~~~~~li~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 330 (767)
...|+. ..+...-..|. +.+.+++++.+-.++... +. ......|..+.-+|... ....++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 322332 22222222222 334555555555554441 10 11222333333333211 113456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 331 LSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF 410 (767)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 410 (767)
+++..+.+.. |+.....+.--|+..++++.|.+..++.++.+...+...|..|+..+...+++.+|+.+.+.....-.
T Consensus 467 le~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~- 544 (799)
T KOG4162|consen 467 LEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG- 544 (799)
T ss_pred HHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence 6666655433 33333333344555667777777777777665556666777777667777777777777666544310
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLA-- 488 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 488 (767)
-|-.....-++.-...++.++++.....+.. .|... -.....++-....+....+.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~-----~we~~-----------------~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLA-----LWEAE-----------------YGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHH-----HHHhh-----------------hhHhhhhhhhhhhhhhcccccC
Confidence 0111111112222335566666655544420 00000 00000011011111111110
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 489 ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS--------VTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.........++..+..-....+ ..+..-.. +...-+.|.. ..|......+.+.++.++|...+.++...
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0000101112222111111000 00000000 1111111221 12344445556666666666666666543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH--HHHHhhhcCCCCCccch
Q 047305 561 GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ--GLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 561 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~p~~~~~~ 638 (767)
.+.....|...+..+...|++++|.+.|..++..+|+.+.+...++.++.+.|+..-|.. .+... .+.+|.++.+|
T Consensus 680 -~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da-lr~dp~n~eaW 757 (799)
T KOG4162|consen 680 -DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA-LRLDPLNHEAW 757 (799)
T ss_pred -chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhCCCCHHHH
Confidence 233455555555666666677777777766666666666666666666666665554433 33332 12346666666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..+|.++.+.|+.++|.+.|+.+...
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 66666666666666666666666544
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=4e-11 Score=121.68 Aligned_cols=512 Identities=13% Similarity=0.019 Sum_probs=311.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHH
Q 047305 146 KQLFLLALAVYYEMVKLNCLPNIVTFSLLING---LSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222 (767)
Q Consensus 146 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 222 (767)
.++.+.+..-+......+.+.+..++..+-.. |...++.+++ .|-......+.|....+.+++.-
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 34556666666666666655555555544433 2333455544 22222222222322222222111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047305 223 YRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE 302 (767)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 302 (767)
.-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++.-...
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 01122333333456778888888888889999999999998875432 25567888888888899988999998887766
Q ss_pred CCCCCHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 047305 303 KIEPDVVLYGVM-IRGLSE-AGKVKDAMKLLSDMRER--GI--VPDTYCYNALIKGFCDL-----------GLLDQARSL 365 (767)
Q Consensus 303 ~~~~~~~~~~~l-~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~ 365 (767)
...|+..+--.+ -..|.+ -+.+++++++-.+.... +. ......|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 544544433333 334433 46777777777776652 11 11234444444444321 123456667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCc
Q 047305 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNP 445 (767)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 445 (767)
+++.++.++. |+.+.-.+.--|+..++.+.|....++..+.+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 467 le~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--- 542 (799)
T KOG4162|consen 467 LEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--- 542 (799)
T ss_pred HHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---
Confidence 7777776653 333333445567778888889888888888755567888888888888888888888888766411
Q ss_pred hhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047305 446 TLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK 525 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (767)
.+.|......-+..-..-|+.++++.....+... |...- .....++-....++...+.-.
T Consensus 543 -----------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 543 -----------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred -----------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC
Confidence 1112222222233333356666666665555432 11000 000111111222222222111
Q ss_pred CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC------HhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 526 GLRP--DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC--TPS------PAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 526 ~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
--.| ...++..+.. ... .+.+.+..-.. +..... .|+ ...|......+.+.+..++|...+.++-+.
T Consensus 603 ~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0011 1122222221 111 11111110000 211111 122 234455666788899999999999999999
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHH--HHHHHHHcCCCCChHh
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALN--IFSVLVECKAIVTPPS 672 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~ 672 (767)
.|..+..++..+..+...|+.++|.+.|.. +. .+|+++.+...++.++.+.|+-.-|.. ++..+++.+ |.++.+
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~ea 756 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEA 756 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999999999999888887 44 569999999999999999998777777 999999998 899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|..+|.++-+.|+.++|.+.|+.+++..
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999999998743
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=2.7e-11 Score=124.31 Aligned_cols=243 Identities=16% Similarity=0.112 Sum_probs=154.1
Q ss_pred CCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 047305 60 LRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV 139 (767)
Q Consensus 60 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 139 (767)
.++..+|..++..|+..|+.+.|- +|.-|.-...+.+..+|+.++.+....++.+.+. .|.+.+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456689999999999999999988 9999988888888899999999988888877665 5888899999
Q ss_pred HHHHHHcCCHHH---HHHHHHHHH----HCCCC-CCHHHH-------------HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 140 LNIAFRKQLFLL---ALAVYYEMV----KLNCL-PNIVTF-------------SLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 140 l~~~~~~g~~~~---A~~~~~~~~----~~~~~-~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
+.+|...||... +.+.++.+. ..|+- |....+ ...+....-.|-++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 222122221 12221 111111 111111122233333444333332211
Q ss_pred CCCChhhHHHHHHHHHccC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 047305 199 ILPNKFTYTIVISGLCQIN-RADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYS 277 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (767)
.. .+... +++-+.... .+++-......... .|++.+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-
T Consensus 170 ~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 11 01111 132222222 22222222222222 4788888888888888888888888888888888888877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (767)
.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66655 67777778888888888888888887766666655443
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9.1e-11 Score=107.72 Aligned_cols=509 Identities=13% Similarity=0.059 Sum_probs=291.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhH
Q 047305 142 IAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADE 221 (767)
Q Consensus 142 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 221 (767)
-+....++..|+.+++--...+-.....+-..+...+.+.|++++|+..+.-+.+.. .|+...+..+.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344567777777777665544422233344445566778889999988888877743 4566666667767777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 222 AYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFE 301 (767)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 301 (767)
|..+-....+ +.-....|.....+.++-++-..+.+.+... ..--.+|.......-.+.+|+++|..++.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655432 3344455556666778877777776666542 23445566666666778899999998887
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047305 302 EKIEPDVVLYGVMI-RGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHT 380 (767)
Q Consensus 302 ~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 380 (767)
. .|.-...|.-+ -.|.+..-++-+.++++-..+. ++-++...+..+....+.-.-..|..-...+...+...
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 6 34444555444 3456666677777777777665 22234444444443333333333333334443332211
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCC
Q 047305 381 FTILICGMCR-----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGG 455 (767)
Q Consensus 381 ~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 455 (767)
| ..+.-.++ ..+-+.|++++-.+.+. .| .+-..++--|.+.++..+|..+.+++... .|..
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-tP~E-------- 318 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT-TPYE-------- 318 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC-ChHH--------
Confidence 1 12222233 24557788887777653 23 33345666788889999999888887310 0000
Q ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 456 NRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
......+...+.+-.........|.+.|+-.-.++..-|. ..-.++..++.-..++++++..++.+...-.. |...-
T Consensus 319 -yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn 396 (557)
T KOG3785|consen 319 -YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFN 396 (557)
T ss_pred -HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 0001112222222222333455667777666555443332 23345666666677888888888888765333 33333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
..++.+++..|++.+|.++|-++....++........+.++|.++++++-|-+++-+. ..|
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~----------------- 457 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP----------------- 457 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc-----------------
Confidence 3567888888999999998887765444444434445667778888877776654222 111
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+....+-.+++.|++.+.+=-|.+.|+.+...+ |+|..| .|+-.....+|.
T Consensus 458 -----------------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW---------eGKRGACaG~f~ 509 (557)
T KOG3785|consen 458 -----------------SERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW---------EGKRGACAGLFR 509 (557)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc---------CCccchHHHHHH
Confidence 1112224455666777777777777777776654 555443 455455556666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 695 YTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 695 ~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
......-.|-+.. ....+..+. ..++ .++.-+++-++
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr-~~~n--sq~E~mikvvr 547 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLR-MKPN--SQCEFMIKVVR 547 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHH-hCCC--chHHHHHHHHH
Confidence 6554332222221 222333333 4443 55666666555
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.2e-12 Score=116.88 Aligned_cols=287 Identities=19% Similarity=0.147 Sum_probs=229.4
Q ss_pred cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------hhH
Q 047305 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI------ITY 499 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~ 499 (767)
+++.++|.+.|-+|. ...+.+.++-.++...|...|..+.|+++.+.+.++ ||. ...
T Consensus 48 s~Q~dKAvdlF~e~l--------------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl 110 (389)
T COG2956 48 SNQPDKAVDLFLEML--------------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLAL 110 (389)
T ss_pred hcCcchHHHHHHHHH--------------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHH
Confidence 578899999999996 334456667788999999999999999999998865 342 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHHHHH
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS----PAVYKSLMTW 575 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 575 (767)
..|..-|...|-++.|..+|..+.+.+. .-......|+..|-...++++|++.-+++.+.+..+. ...|..+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 5677889999999999999999988652 3556788999999999999999999999988654443 3456667777
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHHHHhhcCCHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A 654 (767)
+....+.+.|...+.++++.+|....+...++.++...|+++.|++.+..+... +|+ -+.+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777889999999999999999999999999999999999999999999996544 343 345677888899999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh--cCCccHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF--SKDNKKVHAYHLLCR 732 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~a~~~~~~ 732 (767)
+..+.++.+.. +.+.....+.+.-....-.+.|..++.+-+++ +|+-..++-++..-+. +.|. .++-..++++
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~-~k~sL~~lr~ 343 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGR-AKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccc-hhhhHHHHHH
Confidence 99999998875 45556666777666655578888888777764 4888877777777653 3334 6677778888
Q ss_pred HHHc
Q 047305 733 MKSV 736 (767)
Q Consensus 733 ~~~~ 736 (767)
|...
T Consensus 344 mvge 347 (389)
T COG2956 344 MVGE 347 (389)
T ss_pred HHHH
Confidence 7743
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=2.4e-09 Score=106.44 Aligned_cols=545 Identities=10% Similarity=0.096 Sum_probs=285.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 047305 65 SNSAVISMLLKPNGFDLYWQTLDELRSG-NVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIA 143 (767)
Q Consensus 65 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 143 (767)
.|...+..+.+++++..-...|+..+.. .+.....+|...+.-....+-++-++.+|++-.+ .++..-+--+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHH
Confidence 3444445555666666666666655433 2233445566666666666667777777776663 3333355556666
Q ss_pred HHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCC--hhhHHHHHHH
Q 047305 144 FRKQLFLLALAVYYEMVKLN------CLPNIVTFSLLINGLSKSGKTEV---AIKMLDEMTQRGILPN--KFTYTIVISG 212 (767)
Q Consensus 144 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~~~~li~~ 212 (767)
++.+++++|.+.+...+... .+.+-..|.-+-....+..+.-. ...++..+... -+| -..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 67777777777766665331 12333444444444443322211 22233333222 122 2346667777
Q ss_pred HHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCcccHHHHHHHHHhcCCHHH
Q 047305 213 LCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFE-KDGFVPRLGSYSCLIDGLFRAKRYDE 291 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~ 291 (767)
|.+.|.++.|.++|++.... .....-|+.+.+.|+.-....-+..+= ... +.+-.-+. -+++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHH
Confidence 77777777777777666553 223444555555555422211111110 000 01100011 11222
Q ss_pred HHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 047305 292 AYAWYRKMFEEK-----------IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP------DTYCYNALIKGFC 354 (767)
Q Consensus 292 A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 354 (767)
....|+.+.... -..++..|..-+. +..|+..+-...+.+.... +.| -...|..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 333333333321 1124444544333 4467788888888888765 222 2356888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPN---THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFP-----------------SVG 414 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~ 414 (767)
..|+++.|+.+|+...+.....- ..+|.....+-.+..+++.|+++++......-.| +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999887654221 3556666667777888999999888765431110 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP 494 (767)
Q Consensus 415 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (767)
.|...++..-..|-++....+++++. .-...++....+.+..+-...-++++.+++++-...-..|
T Consensus 479 iWs~y~DleEs~gtfestk~vYdrii--------------dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRII--------------DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 34444444444555555555665553 1112333444444444445556677777776655554445
Q ss_pred CH-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCC--H
Q 047305 495 DI-ITYNSLINGFCK---VGNINGALKLFKELQLKGLRPDSVTYGTLI--NGLQRVDREEDAFRIFGQMPQNGCTPS--P 566 (767)
Q Consensus 495 ~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 566 (767)
++ ..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..--+-|....|+.+++++... +++. .
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHH
Confidence 54 345555544432 1246777777777776 3344433222222 2223446667777777776532 2322 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM--KSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLI 643 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~ 643 (767)
..|+..+.-....=-.....++|+++++..|+...... ..+..-...|..+.|..++.--..-.+|. +...|...-.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 23333332222211234456677777777666554333 34555566777777766655532222343 3345666666
Q ss_pred HHhhcCC
Q 047305 644 GLCQDGQ 650 (767)
Q Consensus 644 ~~~~~g~ 650 (767)
.-.+.|+
T Consensus 703 FEvrHGn 709 (835)
T KOG2047|consen 703 FEVRHGN 709 (835)
T ss_pred HHHhcCC
Confidence 6666666
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=5.6e-13 Score=142.64 Aligned_cols=253 Identities=12% Similarity=-0.016 Sum_probs=191.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFCK---------VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
++.++|...|++..+..+. +...|..+..++.. .+++++|...++++.+.+.. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 3467899999999887432 45566666655442 24478999999999987433 5667888888889999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
++++|...++++++.+ +.+...+..+..++...|++++|+..++++++.+|.++.....++..+...|++++|+..+.+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999864 445677888888999999999999999999999999888777777778889999999999888
Q ss_pred hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC
Q 047305 626 MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILR 704 (767)
Q Consensus 626 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 704 (767)
......|+++..+..++.+|...|++++|...++++.... +.+......++..|...| ++|...++++.+.. -.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 5444457778878999999999999999999999987664 556667777888888888 58888888776531 1222
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
......++..+ .|+ .+ ...+++++.+.|+
T Consensus 509 ~~~~~~~~~~~---~g~-~~-~~~~~~~~~~~~~ 537 (553)
T PRK12370 509 NPGLLPLVLVA---HGE-AI-AEKMWNKFKNEDN 537 (553)
T ss_pred CchHHHHHHHH---Hhh-hH-HHHHHHHhhccch
Confidence 33333344443 355 34 4445588886653
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=5.2e-11 Score=122.30 Aligned_cols=130 Identities=11% Similarity=-0.046 Sum_probs=80.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK--AIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 684 (767)
...++..-+..+++..-.+.+....| ..|..|+..++..++.+.|+...++....+ ..-+..-+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 33444444455554333333322222 447888888888888888888888875322 2234455677888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCC
Q 047305 685 YLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLD 741 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 741 (767)
....+..+++++.+...+-+ ..+...++.... ..|+ -+...++.+-+.+.|+..+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a-~agq-qe~Lkkl~d~lvslgl~et 599 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGA-PAGQ-QEKLKKLADILVSLGLSET 599 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhh-hccC-HHHHHHHHHHHHHhhhhhc
Confidence 88888888887765322222 223444555555 6666 6666777777777776654
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2e-10 Score=107.81 Aligned_cols=295 Identities=12% Similarity=0.021 Sum_probs=203.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKA-GCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTM 467 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 467 (767)
+-.++...|...+-.+... -.+.|......+.+.+...|+.++|...|++.. ...+.+...+...
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~--------------~~dpy~i~~MD~Y 272 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL--------------CANPDNVEAMDLY 272 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh--------------hCChhhhhhHHHH
Confidence 3345555555554444332 233456667777778888888888888887764 2233444445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
.-.+...|++++-..+...+.... .-....|..-+......+++..|+.+-++.++.+.. +...+..-.+.+...++.
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccch
Confidence 556666777777777766665431 112334444445555677888888888888765322 444566666778888888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH-HHHHh-cCCHHHHHHHHHH
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI-EEFLQ-KGEVENAIQGLLE 625 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~ 625 (767)
++|.-.|+.++... +-+...|..++.+|...|++.+|.-.-+...+.+|.+..++..++ .++.- ---.++| +.|.+
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA-Kkf~e 428 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA-KKFAE 428 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH-HHHHH
Confidence 88888888887642 346778888888888889999988888888888888888777664 44433 2334566 44444
Q ss_pred hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 626 MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 626 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
...+..|....+.+.++..+...|++++++.++++.+.. -+|-...+.|++++...+.+.+|..+|..+++.+ |.+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 334456888888888888888889999999999988764 4777788889999999999999999998887643 544
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2.4e-11 Score=114.10 Aligned_cols=292 Identities=14% Similarity=0.058 Sum_probs=195.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|++.+|++...+..+.+..| ...|..-..+-.+.|+.+.+-.++.+..+ ....++..+.......
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae-------------~~~~~~l~v~ltrarl 162 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAE-------------LAGDDTLAVELTRARL 162 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhc-------------cCCCchHHHHHHHHHH
Confidence 567777777777766655332 23344444555666777777777666631 0012334455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHh
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-------VTYGTLINGLQR 543 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~ 543 (767)
....|+++.|..-+.++.+.++. +.........+|.+.|++.....++..+.+.+.--++ .++..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777766533 5566677778888888888888888888877655443 245555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++.++..-+.. ........+-++.+.-++.+
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHH
Confidence 55445445555555432 344566666677778888888888888888886654443 11122233456666655555
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
++.. +..|+++..+..||..|.+.+.|.+|.+.|+.+++. .|+...|..+++++.+.|+..+|.+..++++..-..|
T Consensus 318 e~~l-~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWL-KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHH-HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 5522 235888888999999999999999999999988886 5888899999999999999999999999887654444
Q ss_pred C
Q 047305 704 R 704 (767)
Q Consensus 704 ~ 704 (767)
+
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 4
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=2.1e-12 Score=123.82 Aligned_cols=198 Identities=13% Similarity=0.003 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++++..|.++..+..++..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666665432 2334455555666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHh-hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 612 QKGEVENAIQGLLEM-DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
..|++++|++.+.+. .....|.....+..++.++...|++++|...++++++.. +.++..+..++.++...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666663 211223344456666777777777777777777776665 555666667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 691 DVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
..++++++. .|+......+...+....|+ .++|..+.+.+.
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGD-VAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 777776654 23333322333333335555 666666666554
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=6.1e-10 Score=111.00 Aligned_cols=434 Identities=15% Similarity=0.097 Sum_probs=248.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 242 NALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA 321 (767)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (767)
..++..| ..+++...++..+.+++. .+-...+.....-.+...|+-++|....+......+. +.+.|..+.-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344433 345666666666666552 2222334444444455567777777776666665444 556677766666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 322 GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
.++++|++.|+.....+.. |...+.-+.-.-...++++.........++..+ .....|..++.++.-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777765433 555555555555566677666666666665543 33455666666777777777777777
Q ss_pred HHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 047305 402 NKMEKAG-CFPSVGMFNALI------DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA 474 (767)
Q Consensus 402 ~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (767)
+...+.. ..|+...+.... ......|..++|++.+...+ ............-...+.+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------------~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE--------------KQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--------------hHHHHHHHHhhhHHHHHHHH
Confidence 7776543 235555443322 23456677788877776653 11222233344556677888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGNLPDIITYNSLI-NGFCKVGNINGAL-KLFKELQLKGLRPDSVTYGTL-INGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~ 551 (767)
+++++|..++..++.. .||...|.... .++.+..+.-+++ .+|....+. .|....-..+ +.......-.+...
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHH
Confidence 8899999999888876 45555554443 4443333334444 556555543 2222211111 11112222233345
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc------------CCCccch--HHHHHHHHhcCCHH
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI------------SGRDDES--MKSIEEFLQKGEVE 617 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------p~~~~~~--~~l~~~~~~~g~~~ 617 (767)
.++..+.+.|+++--....++..-=.+..=.++-..-|...+... |+.+.+| .-++..+...|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 566666666765544443333221101111111111111112111 2222222 23466677788888
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.|...+.. .....|.-+..|..-++++.+.|++++|..+++++.+.+ .+|..+-..-+.-..+.++.++|.++..+.-
T Consensus 389 ~A~~yId~-AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDL-AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHH-HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 88555444 333457666777777888888888888888888888887 6666555567777788888888888888877
Q ss_pred HCC
Q 047305 698 KNG 700 (767)
Q Consensus 698 ~~~ 700 (767)
+.|
T Consensus 467 r~~ 469 (700)
T KOG1156|consen 467 REG 469 (700)
T ss_pred hcc
Confidence 655
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=1e-09 Score=109.44 Aligned_cols=263 Identities=15% Similarity=0.056 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 100 VFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLS 179 (767)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (767)
.|...+.+| ..+++...+.+.+.+.+ +.+--..+.....-.+...|+-++|........+.. ..+.+.|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344455554 45788888888888776 444455566555556677788888888877777644 456667777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 180 KSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALA 259 (767)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (767)
...++++|.+.|......+.. |...|.-+.-.-.+.|+++...+...+..+.. +.....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888776432 55666665555566777777777777776642 2234567777777777888888888
Q ss_pred HHHHHHhCC-CCCCcccHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 047305 260 LLRSFEKDG-FVPRLGSYSCLIDG------LFRAKRYDEAYAWYRKMFEEKIEPDVV-LYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~~li~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
+++...+.. ..|+...+.-.... ....|..++|.+.+......- .|.. .-..-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 888877653 23455555443322 345666666766665544331 1222 2234455667778888888888
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHHhcCC-HHHHHHHHHHHHh
Q 047305 332 SDMRERGIVPDTYCYNA-LIKGFCDLGL-LDQARSLQVEIWK 371 (767)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~a~~~~~~~~~ 371 (767)
..+.... ||...|.. +..++.+..+ .+....++....+
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 8887763 44444433 3344432222 2322244444443
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=7.7e-11 Score=110.74 Aligned_cols=293 Identities=15% Similarity=0.059 Sum_probs=212.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
..|++..|++.+.+-.+.+.. ....|..-.++....|+.+.+-.++.++.+....++....-.........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357788888887776666544 3455555666666777777777777777766444566666666777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHH
Q 047305 400 LFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (767)
-..++.+.+.. ++.......++|.+.|+|.....++.++.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~--------------------------------------- 214 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR--------------------------------------- 214 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------------------------
Confidence 77777776543 45566667777777777777777776664
Q ss_pred HHHHHHHHHHcCCCC-------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047305 480 AYKILMQLAESGNLP-------DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 480 A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
+.+.-. ...+|..++.-....+..+.-...|+..... .+-++..-..++.-+.+.|+.++|.+
T Consensus 215 ---------ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 215 ---------KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred ---------HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 222211 1245677776666666666666677777654 34456667778888999999999999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
+..+..+.+..|+ ...++. +.+-++.+.-++..++.++..|++|..+..++..|.+++.+.+|.+.++. ..+..|
T Consensus 285 ~i~~~Lk~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea-Al~~~~ 359 (400)
T COG3071 285 IIEDALKRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA-ALKLRP 359 (400)
T ss_pred HHHHHHHhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH-HHhcCC
Confidence 9999998777666 222333 45778899999999999999999999999999999999999999777775 223335
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
+... |..++.++.+.|+..+|.+.+++.+-.-.+|+
T Consensus 360 s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 360 SASD-YAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred Chhh-HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5544 99999999999999999999999874433443
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.3e-10 Score=106.36 Aligned_cols=277 Identities=11% Similarity=-0.057 Sum_probs=200.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 374 SLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
...|+.....+.+.+...|+..+|+..|++....++. +........-.+.+.|+++....+...+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~------------ 294 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFA------------ 294 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHh------------
Confidence 3356677777888888888888888888877664311 122222233345566777766665555531
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
....+...|..-+......++++.|+.+-++.++... .+...+-.-...+...|++++|.-.|+..+...+ -+...
T Consensus 295 --~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~ 370 (564)
T KOG1174|consen 295 --KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEI 370 (564)
T ss_pred --hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHH
Confidence 1112223333344455567788888888888877642 2555565556778899999999999999987632 25678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH-HHHH-hcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM-TWSC-RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
|..|+..|...|++.+|...-....+. ++.+..+...+. .++. .----++|..++++.++..|....+.+.++..+.
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 999999999999999998888777653 455666666553 3322 2234589999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 612 QKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 612 ~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
..|+.+.++..+++ +.. .|+.. ..+.|+.++...+.+++|.+.|..++..+ |.+..+
T Consensus 450 ~Eg~~~D~i~LLe~~L~~--~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~s 507 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLII--FPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRT 507 (564)
T ss_pred hhCccchHHHHHHHHHhh--ccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHH
Confidence 99999999999998 432 35554 49999999999999999999999999987 555433
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.5e-09 Score=98.42 Aligned_cols=450 Identities=13% Similarity=0.108 Sum_probs=230.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047305 70 ISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLF 149 (767)
Q Consensus 70 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 149 (767)
+.-+....++..|..+++--...+-.-...+-.-+..++...|++++|+..|..+.... .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455567777777777766544422222333345566667777777777777666533 45555555555555566777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 150 LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
.+|..+-.+.. .+...-..|++...+.|+-++-..+.+.+.. ...--.++...-...-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654432 2233334444555555655555444444433 1122222333323333556666666665
Q ss_pred HHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047305 230 KDSGCSPDFVAYNA-LLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDV 308 (767)
Q Consensus 230 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 308 (767)
+..+ |.-...+. +.-+|.+..-++-+.+++.-.... -|| +.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd----------------------------------St 219 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD----------------------------------ST 219 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC----------------------------------cH
Confidence 5431 22222221 223344444445444444444432 112 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD-----LGLLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
...|..+....+.=+-..|.+-.+++..++-.. | ..+.-+++ -..-+.|.+++-.+.+.- | ..-..
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--Hhhhh
Confidence 222222222222111112222233333321110 0 01111111 123455666655544432 1 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGE-------LEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
|+-.|.+.++..+|..+.+++.- .++.-|..-.-.+...|+ ..-|.+.|.-.. ++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-------------~Sa 353 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-------------ESA 353 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-------------ccc
Confidence 55667788888888777766542 122222222222223332 223333332221 111
Q ss_pred Cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 457 RV-HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 457 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
.. .+..--..++..+.-..++++.+-.++.+..--...|.+.+| +..+++..|++.+|.++|-.+....++ |..+|.
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 11 122223344555555667788888887776554444555554 678889999999999999888755555 555554
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 047305 536 -TLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR 599 (767)
Q Consensus 536 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 599 (767)
.|+++|.+.++++-|..++-++- .+.+ -.....+...|.+++++--|-+.|+.+-..+|..
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 66788999999999988876653 2222 2344455666888999888888887776666543
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=8.1e-12 Score=108.18 Aligned_cols=206 Identities=12% Similarity=-0.020 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
+...|.-.|...|++..|..-++++++.+ +.+..++..+...|.+.|+.+.|.+.|+++++..|.+.+++++.+..+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46677788999999999999999999864 44566888888889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 613 KGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 613 ~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.|++++|...|.+ +....-|..+.+|.+++.+-.+.|+.+.|.++|++.++.+ |..+.+...+++...+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998 5555556667789999999999999999999999999998 7888899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcch
Q 047305 692 VFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 745 (767)
++++....+- +...+ ..|...+.+..|+ -+.+..+=.++... .|.+..|
T Consensus 195 ~~~~~~~~~~-~~A~s-L~L~iriak~~gd-~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAES-LLLGIRIAKRLGD-RAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHH-HHHHHHHHHHhcc-HHHHHHHHHHHHHh--CCCcHHH
Confidence 9999876652 44333 3344444546776 55555554444432 4554443
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=2.5e-12 Score=137.60 Aligned_cols=216 Identities=15% Similarity=0.034 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH---------hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 047305 511 NINGALKLFKELQLKGLRPD-SVTYGTLINGLQ---------RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR 580 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (767)
..++|+.+|++..+. .|+ ...+..+..++. ..+++++|...++++++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999999977 454 345656655543 2345899999999999864 456778888888899999
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
++++|...|+++++.+|+++.++..++.++...|++++|+..+.+.. ..+|.++..+..++.++...|++++|+..+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999843 24688776666777778889999999999999
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 661 LVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 661 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+++...|.++..+..++.+|...|++++|+..++++... .|+.......+...+...| ++|...++++.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS---ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH---HHHHHHHHHHHH
Confidence 987763556777888999999999999999999998653 3665555555555442444 467777777663
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=9.1e-11 Score=106.64 Aligned_cols=273 Identities=14% Similarity=0.073 Sum_probs=174.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHH
Q 047305 111 VGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLP---NIVTFSLLINGLSKSGKTEVA 187 (767)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 187 (767)
..+.++|+++|-+|.+.. +.+..+.-+|.+.+-+.|..+.|+.+.+.+.+..--+ -..+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 366788888888887633 4444556677777788888888888888877642111 122234455566777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 188 IKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYNALLNGFCKLRRVDEALALLRS 263 (767)
Q Consensus 188 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (767)
..+|..+.+.+.. -....--++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887765322 3445666777788888888888888877776544332 2345555555566777778888877
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047305 264 FEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDT 343 (767)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (767)
..+.+.. .+.+-..+.+.+...|++++|.+.++.+.+.++.--..+...|..+|.+.|+.++....+..+.+.... .
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--A 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--c
Confidence 7765422 344555566777777888888888888777755545556677777778888888887777777765332 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 344 YCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
..-..+........-.+.|...+.+-+... |+...+..+++....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhc
Confidence 233333333334444555555555544432 666666666665543
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.6e-08 Score=105.54 Aligned_cols=369 Identities=14% Similarity=0.125 Sum_probs=229.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
-|+.-.-+.++..-.+..++...+.|.. +..+++++...|...++-.+- .++.+..-| +..+.-||...
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCEKR 911 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCEKR 911 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhccc
Confidence 3445556677777777888888888877 888888888888766543321 112222112 22344566555
Q ss_pred CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh---hhh-hccCCCCcchHHHH
Q 047305 393 MVDDAQKLFNKMEK----AGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL---FLR-LSQGGNRVHDKASL 464 (767)
Q Consensus 393 ~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 464 (767)
++.-|.-.+++-.. .++......|....+-+.+..+.+- |.+.....+|.. +.. ....-....+++..
T Consensus 912 DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~L----W~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~v 987 (1666)
T KOG0985|consen 912 DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDL----WAKVLNEENPYRRQLIDQVVQTALPETQDPEEV 987 (1666)
T ss_pred CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHH----HHHHHhccChHHHHHHHHHHHhcCCccCChHHH
Confidence 55444333322100 0011122334444444444444332 222211111110 000 01112223566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAESG--NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
...+.+++..+-..+-+++++++.-.. +..+...-|.|+-.-.+. +.....++.+++-..+ . -.++..+.
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD----a---~~ia~iai 1059 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD----A---PDIAEIAI 1059 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC----c---hhHHHHHh
Confidence 778888899999999999999886431 111223334444443333 4556666666654332 1 12345566
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
..+-+++|..+|++. ..+....+.+++ .-+..+.|.++-++. +.+.+|..++.+-.+.|...+|++.
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHH
Confidence 777889999999765 334455555554 467788888876654 6778899999999999999999988
Q ss_pred HHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 623 LLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 623 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
+.+.+ +|+.|...+.+..+.|+|++-+.++..+++.. ..+.+-..|+.+|.+.|++.+-.+.+ .|
T Consensus 1127 yikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~id~eLi~AyAkt~rl~elE~fi-----~g-- 1191 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPYIDSELIFAYAKTNRLTELEEFI-----AG-- 1191 (1666)
T ss_pred HHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCccchHHHHHHHHHhchHHHHHHHh-----cC--
Confidence 87654 45569999999999999999999999998875 33455567888999999988876654 24
Q ss_pred CCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 703 LRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 703 ~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+.....+.....+ ..+. ++.|.-++....
T Consensus 1192 pN~A~i~~vGdrcf-~~~~-y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCF-EEKM-YEAAKLLYSNVS 1221 (1666)
T ss_pred CCchhHHHHhHHHh-hhhh-hHHHHHHHHHhh
Confidence 88888888888877 7776 777777766544
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=1.1e-08 Score=107.02 Aligned_cols=183 Identities=15% Similarity=0.042 Sum_probs=132.7
Q ss_pred CCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047305 77 NGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVY 156 (767)
Q Consensus 77 ~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 156 (767)
++...+...|-+..+.+. .-...|..|...|....+...|.+.|++..+.+ ..+..........|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 345666777766666553 334678888888888888889999999988766 567778888999999999999999885
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 047305 157 YEMVKLNCLPNIVT--FSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGC 234 (767)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 234 (767)
-...+.. +.-... |....-.|...+++..|..-|+...+..+. |...|..++.+|.+.|++..|+++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4443321 111222 222334466778899999999998887544 7888999999999999999999999888764
Q ss_pred CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 047305 235 SPDFVAYNA--LLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 235 ~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
.|+. +|.. ..-.-+..|.+.++...+..+..
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4443 2322 22334578899999988888754
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.9e-08 Score=105.00 Aligned_cols=315 Identities=16% Similarity=0.162 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047305 342 DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSL--PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNAL 419 (767)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 419 (767)
|+......+.++...+-..+-.++++.++-.+.. -+...-+.|+-.. -.-+...+.++.+++..-+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCc-hh------H
Confidence 4555566677777788888888888877654321 2233334444333 33455666666666654321 22 2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
.......+-+++|..+|++.. .+..+...+++ .-+.++.|.++-++.. .+..|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------------------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vW 1107 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------------------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVW 1107 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------------------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHH
Confidence 334456677888888887763 12222222222 1234444444443322 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..+..+-...|.+.+|++-|-+. .|+..|..+++...+.|++++-.+++..+++..-.|...+ .++-+|++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh
Confidence 66666666666666665544332 1444566666666666666666666655554433333322 345555666
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
++..+-+++. .. ++..-....+.-+...|.++.|.-.+..+. -|..|+..+...|.|+.|...-+
T Consensus 1180 ~rl~elE~fi-----~g-pN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1180 NRLTELEEFI-----AG-PNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred chHHHHHHHh-----cC-CCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 6655554432 11 222222344555555555555532222221 15555666666666665555544
Q ss_pred HHHH----------------------cC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 660 VLVE----------------------CK--AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 660 ~~~~----------------------~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
++-. .| +--...-+..++.-|...|-+++-+.+++.++ |++-.+.-...=++.|
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAIL 1322 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHH
Confidence 4421 11 11122334456666677777777777776664 3443333333334444
Q ss_pred h
Q 047305 716 L 716 (767)
Q Consensus 716 ~ 716 (767)
+
T Consensus 1323 Y 1323 (1666)
T KOG0985|consen 1323 Y 1323 (1666)
T ss_pred H
Confidence 4
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.8e-12 Score=114.69 Aligned_cols=231 Identities=15% Similarity=0.039 Sum_probs=197.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 499 YNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
-+.+..+|.+.|.+.+|.+.++...+. .|-..||..|..+|.+.++...|+.++.+-++. ++-+........+++..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999999887 677888999999999999999999999998874 34455555567788999
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
.++.++|.++|+.+++..|.+..+.-.++..|.-.+++|-|+..+.++..- .-.++..|.+++-+|...+.+|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999999999999999999999999999999999998884322 2567788999999999999999999999
Q ss_pred HHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 659 SVLVECKAIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 659 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++++..--.| -..+|..++.+....|++.-|.+.|+-++..+ +++......++.|..+.|+ .++|..+++-..+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGD-ILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhh
Confidence 9997654223 36789999999999999999999999998765 7776666677777768888 99999999987754
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.7e-11 Score=117.38 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=142.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566667777777777777777776553 1234556666677777777777777777776643 3345566666777
Q ss_pred HHhcCChhHHHHHHHHHHhcc--CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDI--SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
+...|++++|.+.++++++.. |.....+..++.++...|++++|...+.+... ..|.++..+..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-IDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCChHHHHHHHHHHHHcCCHHH
Confidence 777777888877777777542 34445666777788888888888777777322 346667778888888888899999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|...++++++.. +.++..+..++.++...|+.++|..+++.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988887774 66777777888888888998888888877653
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-10 Score=109.96 Aligned_cols=418 Identities=13% Similarity=0.067 Sum_probs=223.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVK 325 (767)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (767)
.+.+..|+++.|...|-+....... |...|+.-..+|...|++++|..=-.+-.+..+. -...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 4566789999999999998876533 7788888999999999999998766666655332 3457888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCC---CCCHHHHHHHHHHHHhc--------
Q 047305 326 DAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQAR---SLQVEIWKRDS---LPNTHTFTILICGMCRN-------- 391 (767)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-------- 391 (767)
+|+.-|.+-.+.... |...+..+..++.......+.. .++........ ......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999988876433 6677777777772111000000 00000000000 00011111121111100
Q ss_pred --CCHHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHH
Q 047305 392 --GMVDDAQKLFNKM-----EKAG-------CFP------------S----------VGMFNALIDGLCKAGELEKANLL 435 (767)
Q Consensus 392 --g~~~~A~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~A~~~ 435 (767)
..+..|.-.+... ...+ ..| | ..-...+..+..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0000111100000 0000 000 0 00122333444444445555554
Q ss_pred HHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH-------HHHHHHh
Q 047305 436 FYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNS-------LINGFCK 508 (767)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~ 508 (767)
+.... . ...+...++....++...|.+..+........+.|.. ...-|+. +..+|.+
T Consensus 247 y~~a~--------------e-l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 247 YAKAL--------------E-LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHH--------------h-HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 44442 0 1133334444555555555555555555544444321 1111211 2224444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 047305 509 VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSL 588 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (767)
.++++.|+..|.+.......|+. ..+....+++........-.+... ..-...-+..+.+.|++..|+..
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHH
Confidence 45555566665555443222211 122223333333333332222111 11122224446677778888888
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI 667 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 667 (767)
|.++++.+|+++..|.+.+.+|.+.|.+..|++.... +. .+|.....|..=+.++....+|++|++.|++.++.+ |
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-P 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 8777777777777777777778888877777777655 33 357777777777777777777888888888877776 6
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 668 VTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 668 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+......+.+++.....-....+..++
T Consensus 458 ~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 6666666666666654333445555554
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=7.6e-09 Score=106.67 Aligned_cols=292 Identities=14% Similarity=0.045 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcc
Q 047305 380 TFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVH 459 (767)
Q Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (767)
++..+...|...|++++|+.++++.+++.++ .+..|..-...+-+.|++.+|.+..+... .-...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar--------------~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEAR--------------ELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------hCChh
Confidence 3345556666777777777777777665322 24566666667777777777777776664 22234
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--Hh----hH--HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD--II----TY--NSLINGFCKVGNINGALKLFKELQLK--GLRP 529 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p 529 (767)
|...-+..+..+.+.|++++|.+++....+.+..|- .. .| .....+|.+.|++..|++.|..+.+. .+.-
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 444555566666677777777777776665543221 11 22 34457788888888888777776643 1122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
|..-|.. .|.+.+-+..=+++++---. +... .......+++|.+..+-......-..-....+.++.-....
T Consensus 341 DQfDFH~---Yc~RK~t~r~Y~~~L~~ed~--l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~ 415 (517)
T PF12569_consen 341 DQFDFHS---YCLRKMTLRAYVDMLRWEDK--LRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKA 415 (517)
T ss_pred ccccHHH---HHHhhccHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHH
Confidence 2222211 13333332222222211110 1111 11111222222221111100000000000000000000000
Q ss_pred ---HHHHHhcCCHHHHHHHHHH------------hhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHcCCCCCh
Q 047305 607 ---IEEFLQKGEVENAIQGLLE------------MDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 607 ---~~~~~~~g~~~~A~~~~~~------------~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~ 670 (767)
..--.+..+.+++...-.+ ......+.++. -+|.-+.+.. =+++|.++++.+.+.+ +.+.
T Consensus 416 ~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~ 491 (517)
T PF12569_consen 416 KKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELA-PDNI 491 (517)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhC-ccch
Confidence 0000111111111111000 00011223332 2455555554 5799999999999987 8889
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+|..-..+|.+.|++=-|.+.+.+
T Consensus 492 et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 492 ETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999888765
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.45 E-value=3.1e-08 Score=99.97 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=102.4
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEV 186 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 186 (767)
+-.....|.+|+.+++.+.... .-.--|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344556666666666555422 122234555666666777777766664421 34555666777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
|.++-++... .......|.+-..-+-..|++.+|.++|-.+. .|+. .|.+|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 7666555432 23344555555555666666666666654332 2332 34556666666666666554322
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 267 DGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
. .-..+...+..-|-..|++..|..-|-+.- -|..-++.|-..+.+++|.++-
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 1 112344445555666666666665553322 1344445555555555555443
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.44 E-value=8.6e-08 Score=96.91 Aligned_cols=434 Identities=14% Similarity=0.096 Sum_probs=255.6
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 047305 208 IVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAK 287 (767)
Q Consensus 208 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 287 (767)
+.|+.|.+.|.+..|......-.. +..|......+..++.+..-+++|-.+|+++.. +...+.+|-+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 345666666666666554321111 223555555556666666666666666665532 122334443333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 288 RYDEAYAWYRKMFEEKIEPDVVLY-GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQ 366 (767)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 366 (767)
-+.+|.++-+-.. +..+++. ......+...|+++.|..-|-+... ....+.+......+.+|..++
T Consensus 689 af~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 3455554433221 1111111 1223344556777777766654321 223455556678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCch
Q 047305 367 VEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPT 446 (767)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 446 (767)
+.+..... ...-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-.+..
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~------ 818 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH------ 818 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc------
Confidence 88776543 33456777888999999999998886532 23456778899999999988877763
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 447 LFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG 526 (767)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (767)
+.......|..-.+-+-..|++.+|.+++-.+. .|+. .|..|-+.|..++.+++.++-.-.
T Consensus 819 ---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 819 ---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred ---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 333455666667777778888888877765442 3443 466788899988888887664321
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 527 LRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 527 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.-..|-..+..-+-..|+.+.|...|-++. -|.+.+.+|...+-|++|..+- ......+..-....
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria---ktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA---KTEGGANAEKHVAF 945 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH---hccccccHHHHHHH
Confidence 123456667777888899999988876554 2455667777778888876652 22233333322222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
.+ .+.=--+.|++.+.+... +..-+..-+..+.++-|.++-+-..+. ..+.+...++.-+...|++
T Consensus 946 lw--aksiggdaavkllnk~gl---------l~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 946 LW--AKSIGGDAAVKLLNKHGL---------LEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred HH--HHhhCcHHHHHHHHhhhh---------HHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhhccch
Confidence 22 222222455555555321 223333445567777777776665543 3345566677777888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHhhcCCccHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYL-----LRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~l~~~~~~~~~~a~~~~~~ 732 (767)
++|-+.|-++++.+ .-+.+|..- =.-+. +.|++.++|..||-+
T Consensus 1012 edaskhyveaikln--tynitwcqavpsrfd~e~i-r~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLN--TYNITWCQAVPSRFDAEFI-RAGNKPEEAVEMFIH 1059 (1636)
T ss_pred hhhhHhhHHHhhcc--cccchhhhcccchhhHHHH-HcCCChHHHHHHhhh
Confidence 88888888887643 334444331 11122 556557777777643
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=5.6e-12 Score=114.26 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY-GTLI 538 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 538 (767)
+-..-..+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-.+|.+..++..|+.++.+-.+. .|-.+|| ....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344467899999999999999999998887 455667888899999999999999999999876 5666665 4677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
+.+...++.++|.++|+...+.. +.+.+...++...|.-.++++-|..+|+++++..-.++..+.+++-++.-.++++-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 88889999999999999998863 56777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhhcCCCC-CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 AIQGLLE-MDFKLNDF-QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 A~~~~~~-~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
++..+.+ +.....|+ -..+|.+++.+....|++.-|...|+-++..+ +.+...++.|+-.-.+.|++++|+.+++.+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9988888 33222233 34579999999999999999999999999887 788899999999999999999999999998
Q ss_pred HHCCCCCCHHHHHH
Q 047305 697 LKNGFILRPRVCNY 710 (767)
Q Consensus 697 ~~~~~~~~~~~~~~ 710 (767)
.. ..|+-...+.
T Consensus 456 ~s--~~P~m~E~~~ 467 (478)
T KOG1129|consen 456 KS--VMPDMAEVTT 467 (478)
T ss_pred hh--hCcccccccc
Confidence 65 4476544443
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.43 E-value=5e-08 Score=102.26 Aligned_cols=623 Identities=10% Similarity=-0.028 Sum_probs=359.1
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHH
Q 047305 63 FASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFD-CQPDVYIYNAVLN 141 (767)
Q Consensus 63 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~ 141 (767)
..+|..+..++....+...|.+.|+.+.+.+ +.+...+......|+...+++.|..+.-...+.. ...-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4677778888877777788889999888776 4567788889999999999999998843332211 0111223444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHh
Q 047305 142 IAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRAD 220 (767)
Q Consensus 142 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 220 (767)
.+...+++..|..-|+...+.. +.|...|..++.+|..+|.+..|.++|++.... .|+. ..--.....-+..|.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHH
Confidence 5778899999999999998876 678889999999999999999999999988875 2322 12122233456678999
Q ss_pred HHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCcccHHHHHHHHHhcC
Q 047305 221 EAYRLFLKMKDS------GCSPDFVAYNALLNGFCKLRRVDEALALLRSFE-------KDGFVPRLGSYSCLIDGLFRAK 287 (767)
Q Consensus 221 ~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~ 287 (767)
+|+..+...... +..--..++..+...+.-.|-..++..++++-. ......+...|..+-.+|.-.-
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 999988877542 111112233333333333343334444443322 2111112222222222211100
Q ss_pred CHH------HHHHH-HHHHHHCCCC--------------------CCHHHHHHHHHHHHh------c--CCHHHHHHHHH
Q 047305 288 RYD------EAYAW-YRKMFEEKIE--------------------PDVVLYGVMIRGLSE------A--GKVKDAMKLLS 332 (767)
Q Consensus 288 ~~~------~A~~~-~~~~~~~~~~--------------------~~~~~~~~l~~~~~~------~--g~~~~a~~~~~ 332 (767)
..+ .-..+ +.+....+.. .+..+|..++..|.+ . .+...|...++
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 000 00000 1111111111 123344444444433 1 12345677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 333 DMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
+.++..-. +..+|+.|.-. ...|.+.-+...|-.-....+ ....+|..+.-.+.+..+++.|...|...+...+. +
T Consensus 808 kaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 808 KAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 76654322 55666655444 555677777666655544433 45677888888888999999999999998876533 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHH----------
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYK---------- 482 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---------- 482 (767)
...|..........|+.-++..+|..-.. +....+..+....+..........|+.++-+.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~e---------l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDE---------LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHH---------hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 56666655556667888888877765210 00111122223333333334444455444333
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHh
Q 047305 483 ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVTYG----TLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
.+++.... .+.+.+.|...+...-+.+.+.+|.++..+.+.. ..+.+...|+ .+.+.++..|.++.|...+...
T Consensus 955 al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 955 ALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 33333332 2345677777777777888888888877776521 1123444444 3344566677777666555433
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 047305 558 PQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES---MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~ 634 (767)
.. ..+......-+..+ -.|+++++.+.|++++....++.... ...+......+..+.|...+.+.... .|.+
T Consensus 1034 ~~---evdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~ 1108 (1238)
T KOG1127|consen 1034 WM---EVDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQ 1108 (1238)
T ss_pred ch---hHHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccc
Confidence 21 11222222222222 35899999999999997665555533 34455556677778888888774332 3555
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVECK----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP-RVCN 709 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 709 (767)
..++..+..++.-..+-.....+.++..+.- +-.++. ...--+|.+.|+-.-..+.+++++... |.. .+|.
T Consensus 1109 ~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~--ll~e~i~~~~~r~~~vk~~~qr~~h~~--P~~~~~Ws 1184 (1238)
T KOG1127|consen 1109 ASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG--LLKELIYALQGRSVAVKKQIQRAVHSN--PGDPALWS 1184 (1238)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh--HHHHHHHHHhhhhHHHHHHHHHHHhcC--CCChHHHH
Confidence 5557777777666555444444444443221 111111 123336788999999999999998744 654 4444
Q ss_pred HHH
Q 047305 710 YLL 712 (767)
Q Consensus 710 ~l~ 712 (767)
-|-
T Consensus 1185 lL~ 1187 (1238)
T KOG1127|consen 1185 LLS 1187 (1238)
T ss_pred HHH
Confidence 433
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.3e-08 Score=97.86 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG--------QMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
.+.+|.+++....+....-...+....+......|+++.|++++. .+.+.+.. +.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 466777777776655222122344455555667788888888877 44443333 34444566667777777
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
+.|..++.++++. +...... .+.-...+..++..-.+.|+-++|...++++.
T Consensus 434 ~~a~~vl~~Ai~~---------------------------~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 434 DSASAVLDSAIKW---------------------------WRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred ccHHHHHHHHHHH---------------------------HHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 7777776666521 1111000 01111223334444445577777777777777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 663 ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
+.+ ++|..+...++-+|++.. .+.|..+-
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 665 666666666666666653 45555543
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=2.3e-08 Score=103.13 Aligned_cols=130 Identities=23% Similarity=0.207 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
++..+...|...|++++|+.++++.+++.+. .+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3445566666777777777777777766432 3556666677777777777777777777666443 5555555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNT--------HTFTILICGMCRNGMVDDAQKLFNKMEK 406 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 406 (767)
+.|+.++|.+++....+.+..|.. .-......+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777766665532211 1113345566677777777666665544
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=2.4e-10 Score=111.74 Aligned_cols=217 Identities=17% Similarity=0.039 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGN-LP--DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
+..+.++.-+.+++.... .| ....|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 455777777777775422 12 2356778888899999999999999999987432 5678999999999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
..|+++++.. +.+..++..++.++...|++++|.+.|+++++..|.++.... ........+++++|+..+.+.....+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 9999999853 335677888888899999999999999999999999874221 12334567889999999977443323
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHH-------HcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-------ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|+. |. .+.++...|++.++ ..++.+. +.+ +..+.+|..+|.++...|++++|+..|+++++.+
T Consensus 197 ~~~---~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQ---WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-ERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccc---cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 322 32 34555556766554 3444443 222 3345689999999999999999999999998754
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.1e-07 Score=94.28 Aligned_cols=455 Identities=15% Similarity=0.120 Sum_probs=228.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHH-
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSL--LINGLS- 179 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~- 179 (767)
+=+..+...|++++|++...++...+ +.+...+..=+.++++.+.+++|..+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 33455566677777777777777654 55555666666677777777777754443221 111111 223343
Q ss_pred -hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 047305 180 -KSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV--AYNALLNGFCKLRRVDE 256 (767)
Q Consensus 180 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 256 (767)
+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+++.+ +.. .-..++.+- ..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~----a~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA----AALQ 160 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH----Hhhh
Confidence 567888888777733221 3345666667778888888888888888766432 211 111111111 0011
Q ss_pred HHHHHHHHHhCCCCCCcccHHHH---HHHHHhcCCHHHHHHHHHHHHHC-------CCCC------CH-HHHHHHHHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCL---IDGLFRAKRYDEAYAWYRKMFEE-------KIEP------DV-VLYGVMIRGLS 319 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~-------~~~~------~~-~~~~~l~~~~~ 319 (767)
+. +.+... ..| ..+|..+ .-.+...|++.+|+++++..... +-.- +. ..-..+.-++.
T Consensus 161 ~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 121111 122 2233333 33455677888888887776321 1000 00 01123344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCC-HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC---DLGL-LDQ-ARSLQVEIWKRDSLPNTHTFTILICGMCRNGMV 394 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (767)
..|+.++|..++...++.... |.........-+. ...+ ++. +...++.. ..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~-----------------------~~ 291 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ-----------------------VF 291 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHH-----------------------HH
Confidence 677777777777777766432 4322222211111 1111 110 00000000 00
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH-Hh
Q 047305 395 DDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY-CT 473 (767)
Q Consensus 395 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 473 (767)
.-+......+.... .-....-+.++..| .+..+.+.+....+. ...|....-..+..+. ++
T Consensus 292 ~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp---------------~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLP---------------GMSPESLFPILLQEATKVR 353 (652)
T ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCC---------------ccCchHHHHHHHHHHHHHH
Confidence 11111111111110 00111112222222 233444444444332 1111111111111111 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 474 AGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK--------ELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
...+..|.+++....+............++......|+++.|++++. .+.+.+..|.. ...+...+.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhcc
Confidence 22466777777777666444344555566677778889998888888 55554444443 344555566666
Q ss_pred CHHHHHHHHHHhhhC--CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 546 REEDAFRIFGQMPQN--GCTPS----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
+.+.|..++..++.. .-.+. ..++..++..-.+.|+-++|...++++++.+|++..+...++.+|+... .++|
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA 510 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence 666677777666541 01111 2233333344446799999999999999999999999999998888763 4556
Q ss_pred HHHH
Q 047305 620 IQGL 623 (767)
Q Consensus 620 ~~~~ 623 (767)
...-
T Consensus 511 ~~l~ 514 (652)
T KOG2376|consen 511 ESLS 514 (652)
T ss_pred HHHh
Confidence 4433
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4e-10 Score=110.23 Aligned_cols=227 Identities=13% Similarity=-0.019 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
+..+.++..+.++..... .........+..++..+...|+.+.|...|++..+..+ .+...|+.+...+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRD----------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHcccc----------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 455666666666542110 11123355688888899999999999999999988753 3678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|++++|+..|++..+.... +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999999986322 3567888888999999999999999999875 344332222233345678899999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHH--HHHHHHH-h--hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVEN--AIQGLLE-M--DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~-~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
..|.+.....+++. +. .+..+...|+..+ +.+.+.+ . .....|..+.+|..+|.++...|++++|+..|+++
T Consensus 186 ~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 186 ENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99988775543332 21 2344444555433 3333332 1 11223556678999999999999999999999999
Q ss_pred HHcCCCCChH
Q 047305 662 VECKAIVTPP 671 (767)
Q Consensus 662 ~~~~~~~~~~ 671 (767)
++.+ +++..
T Consensus 263 l~~~-~~~~~ 271 (296)
T PRK11189 263 LANN-VYNFV 271 (296)
T ss_pred HHhC-CchHH
Confidence 9987 54543
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=6.6e-10 Score=112.77 Aligned_cols=175 Identities=18% Similarity=0.123 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCC-
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-----GLR-PDS-VTYGTLINGLQRVDREEDAFRIFGQMPQN-----GCT- 563 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~- 563 (767)
.+++.|..+|.+.|++++|...++...+. +.. |.. ..++.++..|...+++++|..+++...+. |..
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 45666677777888887777777766542 111 111 13556666777778888888777776541 111
Q ss_pred -CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 564 -PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 564 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
....++..+...|...|++++|.++|++++ ....+...+..+....+++.|+
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai---------------------------~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAI---------------------------QILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHH---------------------------HHHHhcccCcChhhhHHHHHHH
Confidence 124577777778888888888888876665 2333322222344445577888
Q ss_pred HHHhhcCCHHHHHHHHHHHH----HcC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLV----ECK--AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..|.+.+++.+|..+|.+.. ..| .|....+|..|+.+|.+.|++++|.++.+.+++
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888777763 222 112244577788888888888888888877763
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.35 E-value=1.7e-08 Score=92.70 Aligned_cols=315 Identities=12% Similarity=0.102 Sum_probs=189.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTF-TILICGMCRN 391 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 391 (767)
-+...+...|++..|+.-|...++.++. +-.++..-...|...|+...|..-+..+++.. ||...- -.-...+.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhc
Confidence 3445555666666666666666654211 22222223345556666666666666655543 332221 1223345566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH
Q 047305 392 GMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY 471 (767)
Q Consensus 392 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (767)
|.++.|..-|+...+.. |+..+ ...++.+....++-..+ ...+..+
T Consensus 120 Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l-----------------------------~~ql~s~ 165 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL-----------------------------VQQLKSA 165 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH-----------------------------HHHHHHH
Confidence 77777777777766653 22111 11122222112221111 1223345
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 472 CTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
...|+...|+.....+++.. +.+...+..-..+|...|.+..|+.-++...+.. ..+..++..+...+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 55677777777777777653 2366666667777777777777777776666543 224445555556666777777777
Q ss_pred HHHHHhhhCCCCCCHh----hHHHH---------HHHHHhcCChhHHHHHHHHHHhccCCCccchH----HHHHHHHhcC
Q 047305 552 RIFGQMPQNGCTPSPA----VYKSL---------MTWSCRRRKFSLAFSLWLQYLRDISGRDDESM----KSIEEFLQKG 614 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~l~~~~~~~g 614 (767)
..+++.++. .|+.. .|..+ +......++|-++.+..++.++..|..+.+.+ .+..++..-|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 777777763 44422 22211 11244668888888888999988888665544 3456677788
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
++.+|+..-.++. ..+|++..++...+.+|.-...|+.|+.-|+++.+.+ +.+.
T Consensus 322 ~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~ 375 (504)
T KOG0624|consen 322 QFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNT 375 (504)
T ss_pred CHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccH
Confidence 8889988877732 2468888889999999999999999999999998887 4443
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.5e-09 Score=101.38 Aligned_cols=414 Identities=15% Similarity=0.093 Sum_probs=277.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 047305 280 IDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNALIKGFCDLGL 358 (767)
Q Consensus 280 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 358 (767)
..+.+..|+++.|..+|-+.+...+. +.+.|+.-..+|.+.|++++|++--.+-++. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 35667899999999999999988766 8899999999999999999999877777665 444 6789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHc------
Q 047305 359 LDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG---MVDDAQKLFNKMEKA---GCFPSVGMFNALIDGLCKA------ 426 (767)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 426 (767)
+++|...|.+-++..+ .+...++.+..++.... +.-.--.++..+... ........|..++..+.+.
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999988875 67778888888772110 000000111111100 0000111222333222111
Q ss_pred ----CCHHHHHHHHHHhhc-------------CCCchhhhhhccCCCCcc----------hHHHHHHHHHHHHhcCCHHH
Q 047305 427 ----GELEKANLLFYKMEI-------------GKNPTLFLRLSQGGNRVH----------DKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 427 ----~~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~ 479 (767)
.+...+.-.+..... ...|. + .-........ -......++....+..+++.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-K-QEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-c-ccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 111111111111100 00110 0 0000000000 11223456677777888899
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-------HHHHHHhcCCHHHHHH
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT-------LINGLQRVDREEDAFR 552 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------l~~~~~~~~~~~~A~~ 552 (767)
|.+-+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+. +..+|.+.++++.|+.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888764 35555666778888888888888877777666532 2222333 3345666788899999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
+|.+.+..--.|+ ...+....+++....+...-.+|.-....-..+..+++.|++..|+..+.+.. +.+|
T Consensus 320 ~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI-kr~P 389 (539)
T KOG0548|consen 320 YYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI-KRDP 389 (539)
T ss_pred HHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH-hcCC
Confidence 9998765322222 23345566777777666666666666666667999999999999999999943 3469
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYL 711 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 711 (767)
+++..|.+.+.+|.+.|.+..|+.-.++.++.+ |+....|..-+.++....+|++|.+.|+++++.+ |+..- ...+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~ 466 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGY 466 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 999999999999999999999999999999998 8888899999999999999999999999998865 65443 3334
Q ss_pred HHHH
Q 047305 712 LRSL 715 (767)
Q Consensus 712 ~~~l 715 (767)
..+.
T Consensus 467 ~rc~ 470 (539)
T KOG0548|consen 467 RRCV 470 (539)
T ss_pred HHHH
Confidence 4443
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=9.4e-10 Score=95.63 Aligned_cols=161 Identities=13% Similarity=0.019 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
....+.-.|...|+...|..-++++++..+. +..+|..+...|.+.|..+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4445555556666666666666666555321 3445555555566666666666666665554322 3345555555555
Q ss_pred hcCCHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGC-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
..|++++|...|+++...-. .....+|..++-+..+.|+.+.|.+.|++.++.+|+.+.+...++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 55666666666665554311 11234555555555555666666666666655555555555555555555555555544
Q ss_pred HHHH
Q 047305 622 GLLE 625 (767)
Q Consensus 622 ~~~~ 625 (767)
.+..
T Consensus 195 ~~~~ 198 (250)
T COG3063 195 YLER 198 (250)
T ss_pred HHHH
Confidence 4333
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=6.4e-10 Score=112.86 Aligned_cols=247 Identities=17% Similarity=0.086 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAES-----G-NLPDII-TYNSLINGFCKVGNINGALKLFKELQLK-----GL 527 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 527 (767)
-..+...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++.+|..+|+++... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3345555777788888888888887766543 1 011221 2233455566666666666666666532 11
Q ss_pred -CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 528 -RPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQN-----GC-TPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 528 -~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.|. ..+++.|..+|.+.|++++|..+++++.+. +. .|. ...+..++..+...+++++|..++.+.+
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al----- 352 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL----- 352 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-----
Confidence 111 124555555666666666666555555431 11 111 1123333444555555555555554443
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCC---hH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIVT---PP 671 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~ 671 (767)
+++...-...+|..+..+..|++.|.+.|++++|.+++++++.. +-..+ ..
T Consensus 353 ----------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 353 ----------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred ----------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 22222111122334567999999999999999999999998632 11222 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHH---HHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK--NGFILRPRVC---NYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~---~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
.++.++..|...+++.+|..+|.+... ....|+.+.. ...+..++...|+ ++.|.++.++..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 688899999999999999999987743 2334554322 2245555558998 999999988866
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=9.1e-07 Score=90.97 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 239 VAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGL 318 (767)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (767)
..|......+-..|+.+.|+.++..... |-++++..|-.|+.++|-++-++-- |......+.+.|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHh
Confidence 3444444445567777777777766543 4456677777888888877665432 666667788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 319 SEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLG---------------LLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
-..|++.+|..+|.+... +...|+.|-.++ +.-.|.+.|++. |. -+..
T Consensus 978 En~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~ 1040 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHK 1040 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhH
Confidence 888888888888876543 222333322221 222222333322 11 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHH--------H--HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 384 LICGMCRNGMVDDAQKLFNKM--------E--KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~--------~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
.+..|-+.|.+.+|+++--.- + +.....|+...+...+.++...++++|..++...
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566777777776653221 1 1223346777777777888888888887776554
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=6e-08 Score=89.28 Aligned_cols=233 Identities=8% Similarity=-0.051 Sum_probs=168.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC------------H--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPD------------I--ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
...+.++|.++.|..=|+.+++..+..+ . ......+..+...|+...|+.....+++..+ .|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 3345555555555555555555432111 0 1122334455678999999999999998743 36677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH---------
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM--------- 604 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------- 604 (767)
+..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...+++++.+|+.-..+-
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 7788899999999999999888887754 345556666778888999999999999999999998765432
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 605 ---KSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 605 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.-+....+.+++.++++.-+++-. .+|..+ ..+..+-.++...|++.+|+....++++.. |.|..++.--+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 113344567888888887777321 235422 234455566777799999999999999987 77789999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.+|.....++.|+.-|+++.+.+ +++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n--~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN--ESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC--cccH
Confidence 99999999999999999998744 5554
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.5e-09 Score=103.81 Aligned_cols=223 Identities=15% Similarity=0.051 Sum_probs=161.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
..-+.+.|+..+|.-.|+... ...|.+..+|..|+......++-..|+..+++..+..+. |....
T Consensus 292 G~~lm~nG~L~~A~LafEAAV--------------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaL 356 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAV--------------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEAL 356 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHH--------------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHH
Confidence 334677888888888888876 445677888888888888888888888888888877533 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----------HHHHhcCCHHHHHHHHHHh-hhCCCCCCHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI-----------NGLQRVDREEDAFRIFGQM-PQNGCTPSPA 567 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~ 567 (767)
..|.-.|...|.-..|+..++.-+...++ . ..+. ..+..........++|-++ ...+..+|+.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~--y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPK--Y---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcc--c---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 78888888888888888888887654211 1 0000 0111112223334444444 3344457777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+...|.-.|.-.|++++|+..|+.++...|+|...|+.++..+....+.++|++.+.+ +.. .|.-..+..+|+..|.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 8888888888888888888888888888888888888888888888888888888888 443 4888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 047305 647 QDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~ 664 (767)
..|.|++|.+.|-+++..
T Consensus 510 NlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 888888888888877643
No 95
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=1.9e-08 Score=97.95 Aligned_cols=212 Identities=6% Similarity=0.009 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 544 (767)
.+-..+...+..++|+....++++..+. +..+|+....++...| ++++++..++++.....+ +..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3334455677888999999988877432 5567777666777777 578999999998877544 555677666666666
Q ss_pred CCH--HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---CCH---
Q 047305 545 DRE--EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---GEV--- 616 (767)
Q Consensus 545 ~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~--- 616 (767)
|+. ++++.+++++++.+ +.+..+|....-++...|+++++++.++++++.+|.+..+++..+.+.... |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 653 67788888888754 456677777777778888899999999999999999999998888777655 323
Q ss_pred -HHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 047305 617 -ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD----GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 617 -~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 682 (767)
++++....+. ....|++..+|+.++.++... ++..+|.+.+.++.+.+ +.++.++..|+++|+.
T Consensus 199 ~e~el~y~~~a-I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDA-ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH-HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2344444332 234688888898888888873 45677888888887765 6777788888888875
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=1.9e-07 Score=95.52 Aligned_cols=201 Identities=9% Similarity=-0.007 Sum_probs=112.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH--hhHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPSP--AVYKSLMT 574 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~ 574 (767)
....+...+...|++++|...+++..+.... +...+..+..++...|++++|..++++..+... .++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344455666777777777777777765322 344556666777777777777777777665321 1221 23445666
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccch-H----HHHHHHHhcCCHHHHHHH--HHHhhhcCCCCCc--cchHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDES-M----KSIEEFLQKGEVENAIQG--LLEMDFKLNDFQL--APYTIWLIGL 645 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~----~l~~~~~~~g~~~~A~~~--~~~~~~~~~p~~~--~~~~~l~~~~ 645 (767)
.+...|++++|..+|++++...|...... . .+...+...|....+... +........|... ......+.++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 67777777777777777764444211111 0 122223333432222111 1111111111111 1123566677
Q ss_pred hhcCCHHHHHHHHHHHHHcCCC--------CChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 646 CQDGQVKEALNIFSVLVECKAI--------VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...|+.++|...++.+...... .........+.++...|++++|.+.+..++..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888887653211 12334455666777888999998888887653
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.8e-09 Score=103.61 Aligned_cols=226 Identities=10% Similarity=0.028 Sum_probs=180.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047305 467 MVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 546 (767)
.+..+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.... |...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 345577889999999999999887533 7889999999999999999999999999987433 56788888899999999
Q ss_pred HHHHHHHHHHhhhCCCCCC-------HhhHHHHHHHHHhcCChhHHHHHHHHHHhccC--CCccchHHHHHHHHhcCCHH
Q 047305 547 EEDAFRIFGQMPQNGCTPS-------PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS--GRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~ 617 (767)
-.+|...++.-+...++-- ...+.. -..+.....+....++|-++....| .++++...++-.|.-.|+++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999998765321000 000000 0111222334556677778888888 89999999999999999999
Q ss_pred HHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 618 NAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 618 ~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
+|+..|.. +. ..|.+...|+.||.+++...+.++|+..|.++++.. |. .-++..|+-.|...|.+++|.++|-.
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999998 44 459999999999999999999999999999999874 54 44777899999999999999999998
Q ss_pred HHHC
Q 047305 696 TLKN 699 (767)
Q Consensus 696 ~~~~ 699 (767)
++..
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 8764
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.9e-08 Score=89.41 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 471 YCTAGLIHKAYKILMQLAES-GNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-+...+. ....||-.++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 34455555555555544211 112344444433221 123334444444444443332 234466666666666666666
Q ss_pred HHHHHHH
Q 047305 550 AFRIFGQ 556 (767)
Q Consensus 550 A~~~~~~ 556 (767)
|-.++.+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 6655543
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.6e-10 Score=77.94 Aligned_cols=49 Identities=45% Similarity=0.893 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 201 PNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 201 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=3.4e-09 Score=107.34 Aligned_cols=223 Identities=14% Similarity=0.075 Sum_probs=190.4
Q ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 456 NRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
..++-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.+. +|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344555566778899999999999999998764 5777889999999999999998888874 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+.++.....-+++|.++.+..... .-..+.......++++++...|+..++.+|-...+|+..+.++.+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 9988887777788888888765432 222333334457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 616 VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 616 ~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
++.|.+.|.. +. .+|++..+|+++..+|.+.|+..+|...++++.+.+ -.+..+|....-...+.|.+++|++.++
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999988 44 469999999999999999999999999999999998 7778888888888999999999999999
Q ss_pred HHHHC
Q 047305 695 YTLKN 699 (767)
Q Consensus 695 ~~~~~ 699 (767)
++...
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 98764
No 101
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=2.3e-10 Score=77.23 Aligned_cols=49 Identities=51% Similarity=1.004 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLC 214 (767)
Q Consensus 166 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 214 (767)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.1e-07 Score=82.96 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHH
Q 047305 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV-LNIAF 144 (767)
Q Consensus 66 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 144 (767)
+..++..+.+..++..+.+++..-.+.. +.+......+..+|....++..|-+.|+++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4455566677788888888887766654 345667777788888888888888888877653 3544444332 34556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHH
Q 047305 145 RKQLFLLALAVYYEMVKLNCLPNIVTFSLLING--LSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222 (767)
Q Consensus 145 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 222 (767)
+.+.+..|..+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 677788888887776542 332222222222 234577778888888776543 444555555556677888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH----HHHHHHHHhcCCHHHHHHHHH
Q 047305 223 YRLFLKMKDS-GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSY----SCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~ 297 (767)
.+-|+...+- |.. ....|+.-+. ..+.++++.|.+...+++++|+...+..- ...++.- .+..-..+..
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr----svgNt~~lh~ 237 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR----SVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh----cccchHHHHH
Confidence 8888877664 444 3556664443 34667888888888888877754322111 0001100 0000000000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLP 376 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (767)
.. -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|...+.-.- ..+++....+-+.-++..++ .
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence 00 1223455555667889999999988888644 2345667766654332 23455555555666666665 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Q 047305 377 NTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF-PSVGMFNALIDGLC-KAGELEKANLLFYKM 439 (767)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 439 (767)
...||..++-.||++.-++.|-.++.+-...-.. .+...|+ +++++. ..-..++|.+-+..+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888888999998888888877653221111 1233333 333333 334566666655544
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=1.4e-08 Score=96.63 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=125.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC-Hhh
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS----VTYGTLINGLQRVDREEDAFRIFGQMPQNGCT-PS-PAV 568 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~ 568 (767)
....+..++..+...|++++|...++++... .|+. .++..+..++...|++++|...++++++.... +. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556667777788888888888888888765 3332 35667777888888888888888888764311 11 113
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 569 YKSLMTWSCRR--------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 569 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
+..+..++.+. |++++|.+.|+++++..|.+......+....... .. .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~------~~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH------HH--------HHHHH
Confidence 44555555544 6788888888888888887765543222211100 00 00 11346
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKA--IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
++..|.+.|++++|+..++++++... +..+..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888999999999999999987641 223578889999999999999999988877543
No 104
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=6.6e-08 Score=94.15 Aligned_cols=211 Identities=9% Similarity=-0.065 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
..+-..+...++.++|+.+..+++..... +..+|+.-..++...| ++++++..++++++.+ +.+..+|..-..++.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 33444455678899999999999987322 3446666666777777 6799999999998864 4455566655555666
Q ss_pred cCCh--hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---CCH--
Q 047305 579 RRKF--SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---GQV-- 651 (767)
Q Consensus 579 ~g~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~-- 651 (767)
.|+. +++.++++++++.+|.+..++...+.++...|+++++++.+.++-. .+|.+..+|+..+.++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE-EDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCchhHHHHHHHHHHhccccccccc
Confidence 6663 7889999999999999999999999999999999999999988532 4688999999999988765 333
Q ss_pred --HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 047305 652 --KEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLL 716 (767)
Q Consensus 652 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 716 (767)
++++++..+++..+ |.+..+|+.++.++.. .++..+|.+.+.+++.. .|++.. ...++..+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHH
Confidence 57888998999987 8899999999999988 34567799998888764 355444 333555544
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=6e-07 Score=91.89 Aligned_cols=307 Identities=14% Similarity=0.004 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
...+..+...+...|+.+.+...+.+...... ...............+...|++++|...+++..+..+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34555566666667777777666665532111 0111223333445567788999999999999987743
Q ss_pred CCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 047305 493 LPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA 567 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 567 (767)
.+...+.. ...+.. .+....+.+.+.. .....|+. .....+...+...|++++|...+++..+.. +.+..
T Consensus 75 -~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 75 -RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred -CcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 24444442 222333 3445555555544 11223333 344456678899999999999999999864 44566
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc--h-H-
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP--Y-T- 639 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~--~-~- 639 (767)
.+..+..++...|++++|...+++.++..|.++.. ++.++..+...|++++|+..+.+.... .|..... . .
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 228 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-SAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-ccCCChHHHHhhH
Confidence 78888899999999999999999999887755433 446889999999999999999885321 2311110 1 1
Q ss_pred -HHHHHHhhcCCHHHHHHH--H-HHHHHcCC-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--C----HHHH
Q 047305 640 -IWLIGLCQDGQVKEALNI--F-SVLVECKA-IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL--R----PRVC 708 (767)
Q Consensus 640 -~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 708 (767)
.+.+.+...|..+.+..+ + ........ +.......+.+.++...|+.++|...++.+......+ . ..+.
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 223334444543333333 1 11111100 1122333467778889999999999999886532210 1 1122
Q ss_pred HHHHHH-HhhcCCccHHHHHHHHHHHHHcC
Q 047305 709 NYLLRS-LLFSKDNKKVHAYHLLCRMKSVG 737 (767)
Q Consensus 709 ~~l~~~-l~~~~~~~~~~a~~~~~~~~~~~ 737 (767)
..++.+ .....|+ +++|..++......+
T Consensus 309 ~~~l~A~~~~~~g~-~~~A~~~L~~al~~a 337 (355)
T cd05804 309 LPLAEALYAFAEGN-YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 223333 3336777 999999998877543
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.05 E-value=1.6e-08 Score=91.63 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=86.8
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH-hhcCC--HHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL-CQDGQ--VKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~ 655 (767)
.++.+++...+++.++.+|++...|..++..|...|++++|+..+.+.. ...|+++..+..++.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL-QLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5566777777777777777777777777777777777777777777632 23477777777777764 55565 47788
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
++++++++.+ |.++.++..++.++...|++++|+..|+++++.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888887776 667777777777788888888888888877764
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1e-05 Score=83.58 Aligned_cols=336 Identities=15% Similarity=0.154 Sum_probs=199.3
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047305 109 YKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAI 188 (767)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 188 (767)
...|..++|+.+|++-.+. ..|=..|-..|.+++|.++-+.--+..+ ..+|-.-..-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 3568888888888877653 3444556667888888887665433222 234444444455567777777
Q ss_pred HHHHHHHH----------CCC---------CCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 189 KMLDEMTQ----------RGI---------LPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 189 ~~~~~~~~----------~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
+.|++... ..+ ..|...|.....-+-..|+.+.|+.+|....+ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 77665321 110 11334444455555667888888888877654 445777778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 047305 250 KLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA-------- 321 (767)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 321 (767)
-.|+.++|-++-++- -|....-.|.+.|-..|++.+|...|-+... +...|+.|-.+
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 889999998887652 2555666788999999999999988876542 22233322222
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHH
Q 047305 322 -------GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVE--------IWKR--DSLPNTHTFTIL 384 (767)
Q Consensus 322 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 384 (767)
.+.-.|-++|++.- . -+...+..|.+.|.+.+|.++--+ ++.. +...|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 22333444444321 1 122234556777777777664221 1222 334577778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHH
Q 047305 385 ICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464 (767)
Q Consensus 385 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (767)
.+.++...++++|..++-...+. ...+. +|...+..-..+.-+.|...+.. . .+......++
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~-~-------~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDD-M-------PNEQERKQVL 1148 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCC-C-------ccHHHHHHHH
Confidence 88888888888888887766542 22222 23333333333333334211110 0 0111234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (767)
..+.+.+.++|.+..|.+-|.++-++ ...++++.+.|+.++.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKI 1190 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceE
Confidence 78889999999999998888776432 1345667777876653
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=3.3e-08 Score=88.36 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
..+...+...|+-+.+..+....... .+.+.......+....+.|++.+|+..+.++....|++...++.++.+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 66677788888888888888776542 34566677778888899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 615 EVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 615 ~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
+++.|...+.+ ++ ..|.++.++++++..|.-.|+++.|..++..+.... +.|+.+...++.+....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999888777 44 458889999999999999999999999999998775 667888888999999999999999876
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=2.6e-08 Score=106.96 Aligned_cols=143 Identities=12% Similarity=-0.003 Sum_probs=121.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHH
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIW 641 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l 641 (767)
...+...+..|..+..+.|.+++|..+++.+++..|++..+...++.++.+.+++++|+..+.+... ..|+++..+..+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCCCCHHHHHHH
Confidence 4566888888999999999999999999999999999999999999999999999999888888432 469999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.++.+.|++++|.++|+++...+ +.++.++..++.++...|+.++|...|++++.. ..|-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHH
Confidence 999999999999999999998865 677889999999999999999999999999864 2344443
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.03 E-value=5.7e-09 Score=89.36 Aligned_cols=115 Identities=13% Similarity=0.009 Sum_probs=74.7
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
.+|+++++.+|.+ +..++..+...|++++|+..+.... ..+|.+..+|..++.++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4455556555553 4455666666777777666666632 2346666667777777777777777777777777765
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
|.++..+..++.++...|++++|+..|+++++.. |+...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~ 128 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASW 128 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence 6667777777777777777777777777776633 554433
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.1e-07 Score=83.96 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHH
Q 047305 475 GLIHKAYKILMQLAES---G-NLPDII-TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREE 548 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 548 (767)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- |.+. .-..-+.-+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4455555555555321 2 223332 23334444455566666666666665542 3322 2212222234456666
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 549 DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF 628 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (767)
+|+++++.+++.+ +.|..++..-+.+....|+.-+|++-+.+.++.++.|..+|..++..|...|++++|.-.++++-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 6666666666543 444555555555555556666666666666666666666666666666666666666666666322
Q ss_pred cCCCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcC
Q 047305 629 KLNDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECK 665 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 665 (767)
..|.++..+..++.+++-.| +++-|.++|.++++.+
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 24555555555665555443 4555666666665554
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=4.6e-08 Score=87.44 Aligned_cols=165 Identities=14% Similarity=0.046 Sum_probs=139.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+..+ ..+...+...|+-+.+..+..+.....|.+.......+....+.|++.+|+..+.+... ..|.+..+|+.++.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHH
Confidence 4444 55667788889999999999998888899988888899999999999999999999643 469999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 724 (767)
|.+.|+.++|...|.++++.. +.++.+.+.++..|.-.|+++.|+.++..+...+ +....+.+.+.......|+ ++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~-~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGD-FR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCC-hH
Confidence 999999999999999999996 8889999999999999999999999999997654 4344445555555548888 99
Q ss_pred HHHHHHHHHHH
Q 047305 725 HAYHLLCRMKS 735 (767)
Q Consensus 725 ~a~~~~~~~~~ 735 (767)
+|..+..+-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988776553
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=6.4e-09 Score=99.86 Aligned_cols=129 Identities=13% Similarity=-0.039 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG--EVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
.....+.+|.+.++++.|.+.++.+.+.+.+...+...-+++....| ++.+|...+.++..+ .+.++..++.++.++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 33334444444444444444444444332222222222222222222 344454555554332 233444456666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL-DLAMDVFLYTLK 698 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 698 (767)
...|+|++|.+.++++++.+ +.++.++..++-+....|+. +.+.++++++..
T Consensus 212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66666666666666666555 55566655565555555555 445555555543
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=4.2e-08 Score=93.45 Aligned_cols=184 Identities=10% Similarity=-0.050 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESM 604 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 604 (767)
...+..++..+...|++++|...++++.... +.+ ...+..++.++.+.|++++|+..|+++++..|+++. +++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456667777778888888888888877642 112 235566777778888888888888888888887776 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 605 KSIEEFLQK--------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 605 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.++.++... |++++|++.+.+... ..|.+...+..+..... .... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence 666666654 566677666666322 23555433222211110 0000 0 0112367
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGF-ILRP-RVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+..|.+.|++++|+..++++++... .|.. ..+..+...+. ..|+ +++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~-~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGL-KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhh
Confidence 8889999999999999999987641 1222 33444444444 8888 99999999887754
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=8.4e-09 Score=88.31 Aligned_cols=125 Identities=12% Similarity=-0.048 Sum_probs=100.3
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL 630 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (767)
..++++.++ ..|+. +......+...|++++|...|+.++...|.+..++..++.++...|++++|+..+.+.. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-ML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc
Confidence 355666655 23443 44566777889999999999999999999999999999999999999999988888843 24
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+|.++.++..++.++...|++++|+..|+++++.. |.++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 68889999999999999999999999999999887 777777766665544
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.9e-07 Score=82.65 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=157.4
Q ss_pred hcCCHHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 508 KVGNINGALKLFKELQL---KG-LRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
...+.++.++++.++.. .| ..++.. .|..++-+....|+.+-|...++.+... ++.+..+-..-+..+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 45677888888888774 24 556654 4566777788899999999999998775 455555555555557788999
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
++|+++|+..++.+|.+..++...+.+....|+..+|++.+.+... ..+.+..+|.-++.+|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999999999999999888889999999999999999432 358889999999999999999999999999998
Q ss_pred HcCCCCChHhHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 047305 663 ECKAIVTPPSCVKLIHGLCKRG---YLDLAMDVFLYTLKNG 700 (767)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 700 (767)
-.. |-++-.+..+++.++-.| ++.-|+++|.++++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 876 888889999999887655 5667999999998854
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=4.6e-08 Score=88.67 Aligned_cols=154 Identities=8% Similarity=0.081 Sum_probs=122.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.+ +.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567788888876544432211 11 01223667788888888888764 67888999999999999999
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHH-HhcCC--HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEF-LQKGE--VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
++|...|+++++..|+++.++..++.++ ...|+ .++|.+.+.+.. +.+|.++.++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL-ALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999974 67777 589988888843 2469999999999999999999999999999
Q ss_pred HHHHcCCCCChH
Q 047305 660 VLVECKAIVTPP 671 (767)
Q Consensus 660 ~~~~~~~~~~~~ 671 (767)
++++.. +|+..
T Consensus 169 ~aL~l~-~~~~~ 179 (198)
T PRK10370 169 KVLDLN-SPRVN 179 (198)
T ss_pred HHHhhC-CCCcc
Confidence 999987 56543
No 118
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.98 E-value=9.5e-05 Score=77.88 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 570 KSLMTWSCRRRK---FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 570 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+.+++.+.+.++ +-+|+-+++..+...|.|...-..++.+|.-.|-+..|.+.+..++.+..-.+.. =..+...+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl-gh~~~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL-GHLIFRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc-hHHHHHHHH
Confidence 456677777765 4568888888899999999999999999999999999999999987653333322 223344555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHH---HHHHCCCCCCHHHHHHHHHHHhhcCCcc
Q 047305 647 QDGQVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFL---YTLKNGFILRPRVCNYLLRSLLFSKDNK 722 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 722 (767)
..|++..|...+....+.- ..+ ..+-. ++..-++.|.+++-.+... ++......-...+-+..+..+. ..+.
T Consensus 519 t~g~~~~~s~~~~~~lkfy-~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~-~~~~- 594 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLKFY-DSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLC-NADR- 594 (932)
T ss_pred hcccchhHHHHHHHHHHHH-hhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCc-
Confidence 6788888888888776532 221 11222 2223356666666555433 2221111111122233455554 4454
Q ss_pred HHHHHHHHHHHH
Q 047305 723 KVHAYHLLCRMK 734 (767)
Q Consensus 723 ~~~a~~~~~~~~ 734 (767)
.++-...++.|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 566555555554
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=1.3e-08 Score=97.80 Aligned_cols=261 Identities=15% Similarity=0.089 Sum_probs=169.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 470 QYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
-+.-.|.+..++.-.+ ...............+.+++...|+++.++. ++.... .|.......+...+...++.+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455788888886555 2222112233445567788999998876543 333332 6666667667666655566677
Q ss_pred HHHHHHHhhhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 550 AFRIFGQMPQNGCTPSP-AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (767)
++.-++........++. .+......++...|++++|++++.+. .+.......+.+|.+.++++.|.+.+..+..
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777666544333233 33333445577889999999876442 4555666778999999999999999998764
Q ss_pred cCCCCCccchHHHHHHHhhcC--CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H
Q 047305 629 KLNDFQLAPYTIWLIGLCQDG--QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-P 705 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 705 (767)
.+.++..+...-+|+....| ++.+|.-+|+++.+. .++++.+.+.++.++...|++++|.+.++++++.+ |+ +
T Consensus 160 -~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~ 235 (290)
T PF04733_consen 160 -IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDP 235 (290)
T ss_dssp -CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHH
T ss_pred -cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCH
Confidence 34454444444455554444 699999999998776 47899999999999999999999999999998654 55 4
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 706 RVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 706 ~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
.+...++.... ..|+..+.+..++.+++.. .|+++....
T Consensus 236 d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~--~p~h~~~~~ 274 (290)
T PF04733_consen 236 DTLANLIVCSL-HLGKPTEAAERYLSQLKQS--NPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHH-HTT-TCHHHHHHHHHCHHH--TTTSHHHHH
T ss_pred HHHHHHHHHHH-HhCCChhHHHHHHHHHHHh--CCCChHHHH
Confidence 44444544444 5676347788899988865 677665544
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.95 E-value=1.3e-08 Score=87.18 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=99.8
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
+.|+++++..|.+......++..+...|++++|.+.+..... ..|.++..+..++.+|...|++++|+.+++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 356778888888888888889999999999999888877532 358888889999999999999999999999998887
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
|.++..+..++.+|...|++++|...|+++++.. |+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 123 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSE 123 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence 7788889999999999999999999999998754 66554333
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6.2e-06 Score=96.04 Aligned_cols=376 Identities=12% Similarity=-0.029 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 312 GVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
......+...|++.+|......... .+. ..............|+++.+...+..+-......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3344556677777777664443311 100 011122223344567777776666554211111122223344555667
Q ss_pred cCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH
Q 047305 391 NGMVDDAQKLFNKMEKAGC------FPSV--GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (767)
.|++++|...+......-. .+.. .....+...+...|++++|...+++...... .........
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~ 492 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---------LTWYYSRIV 492 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------CccHHHHHH
Confidence 8999999999988754311 1111 1222233456689999999999988742110 000011123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-C
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNL---PD--IITYNSLINGFCKVGNINGALKLFKELQLK----GLR--P-D 530 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~ 530 (767)
....+...+...|+++.|...+++....... +. ..++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4456677788899999999999887643111 11 234455667788999999999998887652 211 1 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc--ch-
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTP--SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD--ES- 603 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~- 603 (767)
...+..+...+...|++++|...+++.... ...+ ....+..+..++...|++++|...++++....+.... .+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445566677889999999999887653 1112 2334445666788899999999999998754332211 11
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc----chHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCC-Ch
Q 047305 604 M----KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA----PYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIV-TP 670 (767)
Q Consensus 604 ~----~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 670 (767)
. .....+...|+.+.|...+...... .+.... .+..++.++...|++++|...++++... +.+. ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1 1124445688999997777664321 111111 1457888999999999999999998653 2121 13
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+...++.++...|+.++|...+.++++..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 457778889999999999999999998864
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=6.6e-06 Score=95.84 Aligned_cols=341 Identities=11% Similarity=-0.052 Sum_probs=213.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHH
Q 047305 317 GLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDS------LPN--THTFTILICGM 388 (767)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 388 (767)
.....|+++.+...+..+.......+..........+...|+++++...+..+...-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777766552211111222233344555678999999988887654311 111 12223334556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKAGCFPSV----GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (767)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+...... ............
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~--------~~g~~~~~~~~~ 534 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR--------QHDVYHYALWSL 534 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh--------hhcchHHHHHHH
Confidence 7899999999999998763212222 2345566677889999999999988741100 001111223355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--hhh
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAES----GNL--P-DIITYNSLINGFCKVGNINGALKLFKELQLKG--LRPD--SVT 533 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~ 533 (767)
..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 66778888999999999998876542 111 1 12234455666778899999999998876531 1122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHh--hH--HHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----h
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNG--CTPSPA--VY--KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----S 603 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~ 603 (767)
+..+...+...|++++|...+..+.... ...... .. ......+...|+.+.|...+.......+..... .
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4456677888999999999998885421 111110 10 111233456789999999877765432222211 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc-----CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFK-----LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
..++.++...|++++|...+.+.... .......++..++.++...|+.++|...+.++++..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46788899999999998888873211 111223457788899999999999999999998875
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=8.2e-07 Score=90.62 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=188.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------------------mw~~vi~CY~~lg~~~kaeei~~q~lek 453 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------------------MWDPVILCYLLLGQHGKAEEINRQELEK 453 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------HHHHHHHHHHHhcccchHHHHHHHHhcC
Confidence 333344567778889999999999998874 6778899999999999999999988874
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 491 GNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
+|+...|..+++......-+++|.++.+..... .-..+.......+++.++.+.++.-.+.+ +.-..+|.
T Consensus 454 --~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf 523 (777)
T KOG1128|consen 454 --DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWF 523 (777)
T ss_pred --CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHH
Confidence 678889988888887777789999988876543 11122222344789999999999988753 44567888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
.+.-+..+.++++.|.+.|...+...|++..+|+++..+|.+.|+..+|...+.+.-. .+-.+..+|.+..-+..+.|.
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCCCCCeeeechhhhhhhccc
Confidence 8888889999999999999999999999999999999999999999999988888422 236666778888889999999
Q ss_pred HHHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKA-IVTPPSCVKLIHGLC 681 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 681 (767)
+++|++.+.++.+... ..|+.+...++....
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999999999864321 235555555555444
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.5e-06 Score=77.74 Aligned_cols=174 Identities=18% Similarity=0.133 Sum_probs=123.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR---- 543 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 543 (767)
+..|+..|++++|.+...... +......=...+.+..+.+-|...++.|..-. +..|.+.|+.++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555566666655554411 22222222344567778888999999998652 56677778877753
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.+++.+|.-+|++|-+. .+|++.+.+..+-++...|++++|..+++.++...+.++.++.+++-+....|+..++.+.+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 35688899999999764 57888888888888889999999999999999999999999999998888999888877776
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
........|..+- ..++++...-|+++.
T Consensus 265 l~QLk~~~p~h~~-----------vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF-----------VKHLNEKEAEFDRLV 292 (299)
T ss_pred HHHHHhcCCcchH-----------HHHHHHHHHHHHHHH
Confidence 6643344565543 235555566666654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=1.5e-06 Score=94.31 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccC
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSV-GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQG 454 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 454 (767)
.+...+..|+..+...+++++|..+.+...+.. |+. ..|..+...+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------- 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N---------------- 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h----------------
Confidence 356677788888888888888888888666543 333 3344444456666665555444 2
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
++.......++.....+...+.+. .-+...+..++.+|.+.|+.++|...|+++.+.... |..+.
T Consensus 89 ------------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aL 153 (906)
T PRK14720 89 ------------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIV 153 (906)
T ss_pred ------------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHH
Confidence 222333333443333344444443 234557888999999999999999999999998733 77889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
|.++..|... +.++|.+++.+++.. +...+++.++.++|.+++...|.+...+..+.......-
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 9999999988 999999999988753 667789999999999999999999887664433322221
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+.++ ...+.-+-..|-..++|++++.+++.+++.. +.|..+...++.+|. +++.+ ...|+
T Consensus 218 ~~~~~---------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~e 278 (906)
T PRK14720 218 EFTRL---------------VGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLE 278 (906)
T ss_pred ccchh---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHH
Confidence 12222 2224444556667789999999999999998 778888888998887 44444 55555
Q ss_pred HHHH
Q 047305 695 YTLK 698 (767)
Q Consensus 695 ~~~~ 698 (767)
+.++
T Consensus 279 e~l~ 282 (906)
T PRK14720 279 DYLK 282 (906)
T ss_pred HHHH
Confidence 5544
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=7.1e-07 Score=96.11 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=149.6
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
..++..+..+-.+.+.-|..++|- +++.++.+ ++..........+++.-....... ...+...+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 345555666666677777777663 34444332 122222223333333333333332 3445788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEV 616 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (767)
|..+..+.|.+++|..+++.+.+.. +.+......++.++.+.+++++|...+++++...|+++.....++.++.+.|++
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999842 334567777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
++|+..|.++.. ..|+++.++..++.++...|+.++|...|+++.+.. .+....|
T Consensus 171 ~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~ 225 (694)
T PRK15179 171 EQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKL 225 (694)
T ss_pred HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHH
Confidence 999999999654 468888899999999999999999999999998775 4444443
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=0.0004 Score=73.38 Aligned_cols=219 Identities=14% Similarity=0.093 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHH--HHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVIS--MLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALES 120 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 120 (767)
+...|+.-..-+.++.|-. .|..++. ++.+.|+.++|..+++.....+. .+..|...+-.+|.+.+.+++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 5677888887777776522 2333333 34688999999988888877764 3778888999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hHHHHHH
Q 047305 121 FGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSG-K---------TEVAIKM 190 (767)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~ 190 (767)
|++.... -|+..-...+..+|++.+++..-.++--++.+. ++.+.+.+-++++.....- . ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998864 466777778888888888776655554444442 3455556555666554331 1 2335556
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHHccCCHhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047305 191 LDEMTQRG-ILPNKFTYTIVISGLCQINRADEAYRLFL-KMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDG 268 (767)
Q Consensus 191 ~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (767)
++.+.+.+ ..-+..-.......+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665543 11122223333445556677777777773 33332223333344455666667777777777777776655
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=8.2e-07 Score=86.69 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=106.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.-.+...|++++|+..++.+++. .+.|+.......+.+.+.|+.++|.+.+++++...|..+....+++.+|.+.|++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 33455678888888888887764 35566666677777888888888888888888888888777788888888888888
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+|+..+..... .+|+++..|..|+.+|...|+..+|...+ +..|...|++++|+..+..+.
T Consensus 392 eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 88888877432 35888888888888888888877766543 334566778888888888776
Q ss_pred HC
Q 047305 698 KN 699 (767)
Q Consensus 698 ~~ 699 (767)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=2.3e-06 Score=93.44 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=170.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPD---SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVY 569 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 569 (767)
.+...|-..|.-....++.++|.++++++... +++-. ...|.++++....-|.-+...+.|+++.+. -..-.+|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 35567888888888999999999999998864 22111 125666776666667777888999999874 3345678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhc
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQD 648 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~ 648 (767)
..|...|.+.+++++|.++|+.|++.+.....+|...+..+.++++.++|...+.+ +..-....+.......+..-++.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88999999999999999999999999888888888999999999998888888887 44332233666677778888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 649 GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
|+.+.+..+|+..+... |.-...|+.+++.-.+.|..+-++.+|++++..++.|...-
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99999999999998775 88889999999999999999999999999999888877544
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=2.1e-06 Score=83.89 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTW 575 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 575 (767)
.+....-.+...|++++|+..++.+... .|+.. .+......+.+.++.++|.+.+++++.. .|+ ......+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3334444566889999999999999887 55544 5556678899999999999999999985 454 6677788899
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
|.+.|++.+|+.++...+..+|+++..|..++.+|...|+..+| ....+..|...|++++|+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a------------------~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA------------------LLARAEGYALAGRLEQAI 445 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH------------------HHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999998888 455677788999999999
Q ss_pred HHHHHHHHcCCCCChHhHH
Q 047305 656 NIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (767)
..+..+.+.. +.+...|.
T Consensus 446 ~~l~~A~~~~-~~~~~~~a 463 (484)
T COG4783 446 IFLMRASQQV-KLGFPDWA 463 (484)
T ss_pred HHHHHHHHhc-cCCcHHHH
Confidence 9999998876 66655543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=2.4e-06 Score=92.75 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=162.7
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKG 526 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (767)
|++...+.-.+.+...+..++..+...+++++|.++.+...+. .|+. ..|..++..+...++.+++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 3333334445667888999999999999999999999977766 3443 3444444466666665555443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 527 LRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 527 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.++.......++.-...++..|.+ ..-+...+..++.+|.+.|+.++|..+|+++++.+|.++.+.+.+
T Consensus 88 ---------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 88 ---------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred ---------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 333344444455444444445554 234555888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----------------
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT----------------- 669 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 669 (767)
+..|... +.++|++.+.+.. ..|...+++.++.++|.++.... +.+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV---------------~~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAI---------------YRFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHH---------------HHHHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc
Confidence 9999999 9999988777632 12455556666666666666554 332
Q ss_pred ---hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCc
Q 047305 670 ---PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 670 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~ 721 (767)
...+.-+-..|...++|+++..+++.+++.. |+ ......+..++....++
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~~kY~~ 273 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYKEKYKD 273 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHHHHccC
Confidence 2233334467778889999999999999854 44 44455577777644443
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=86.25 Aligned_cols=132 Identities=12% Similarity=0.027 Sum_probs=105.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.-+.+.++|.+|+..|.++++..|.++..|.+.+.+|.+.|.++.|++..+... ..+|....+|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCcHHH
Confidence 446688999999999999999999999999999999999999999998888732 3579999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD---LAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 707 (767)
|++.|+++++.. |.+......|-++--+.+..+ .+..-++.+...|.-|+...
T Consensus 168 A~~aykKaLeld-P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 168 AIEAYKKALELD-PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHhhhccC-CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 999999999987 677766666766666555544 44444444433343355443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00039 Score=69.09 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKV---GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRI 553 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 553 (767)
.+++..+++.....-...+..+|..+..---.. ...+..-..++++...-..--..+|..+++.-.+..-.+.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666666655432222333443333211111 12555566666666542222234688888888888889999999
Q ss_pred HHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc-CC
Q 047305 554 FGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK-LN 631 (767)
Q Consensus 554 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 631 (767)
|.++.+.+..+ +..++.+++.-|| .++.+-|..+|+--++..++.+.-....+..+...|+-..|...|+++... ..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999877666 6777788888665 688999999999999999999998888999999999999998888885433 22
Q ss_pred CC-CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----CChHhHHHHHHHHHhcCChhHHHH
Q 047305 632 DF-QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----VTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 632 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
|+ ...+|..++.--..-|++.-++++-++....- + +.-.....+.+-|.-.+.+.--..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af-~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF-PADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-chhhcCCCChHHHHHHHHhhcccccccHH
Confidence 22 23569999988888899999999988875432 3 111233445556665555444333
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=4e-07 Score=78.51 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---ccchHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIW 641 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l 641 (767)
.|..++..+ ..++...+...++.+.+..|..+ .+...++..+...|++++|...|..+.... |+. +.+...|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 444444444 47778888888888888877773 344557788888888888888888844332 332 2356778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.++...|++++|+..++..... +..+..+...|++|.+.|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888999999999998775332 445667888999999999999999998876
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=4e-07 Score=77.97 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
.++++++.. +.+......++..+.+.|++++|.+.|++++..+|.++..+..++.++...|++++|+..+.+.. ...|
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 455555532 22445566677778889999999999999999999999999999999999999999988888742 2458
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.++..+..++.+|...|++++|+..|+++++.+ |.+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 119 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC-GENP 119 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc
Confidence 888889999999999999999999999999876 4443
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=3.1e-07 Score=76.58 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=81.7
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
++.-...+.++..+...|++++|...+.-+ ...+|.+...|..|+.++...|++++|+..|.++...+ +.+|..+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLL-TIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 444455667777788888888886665553 23568888888899988888999999999999988887 7888888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+.++...|+.+.|++.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998887653
No 137
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=2.1e-05 Score=86.22 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=172.7
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN-LP---DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV 532 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 532 (767)
.|.....|...+......++.+.|.+++++++..-. .- -...|.++++.-...|.-+...++|+++.+.. -...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 345566788889999999999999999999876421 11 13468888887778888888999999998752 2345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC--ccchHHHHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR--DDESMKSIEEF 610 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 610 (767)
.|..|...|.+.+++++|.++++.|.+. +.....+|..+++.+.+.++-+.|..++.++++..|.. .......+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7889999999999999999999999885 45778899999999999999999999999999999983 34445678888
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
++.|+.+.+...+..+.. ..|.....|+..+..-.+.|+.+.+..+|+++...++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~-ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS-AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHh-hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999888887533 358888889999999999999999999999999887654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=3e-06 Score=73.08 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSI 607 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 607 (767)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.++...|++. .+...++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3677777877788877642 222 23334455667788888888888888887765542 3556778
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
.++...|++++|+..+.... ..+..+..+..+|.+|...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88899999999988886643 235566678899999999999999999998863
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.45 E-value=2.5e-06 Score=71.26 Aligned_cols=99 Identities=10% Similarity=-0.166 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
....-.+.-.+...|++++|..+|+-....+|.+...+.+++.++...|++++|+..+..... .+|+++.++..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCCchHHHHHHHHH
Confidence 344445555577899999999999999999999999999999999999999999999988432 4599999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcC
Q 047305 646 CQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~ 665 (767)
...|+.+.|.+.|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999997654
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0027 Score=63.39 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 62 SFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 62 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
+..+|..+++-+..+ .++++...++++...- |.++..|..-+..-.+..+++....+|.+....- .+...|..-+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 556666666655544 6666666666665542 4455666666666666666666666666655432 3344444444
No 141
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.4e-07 Score=55.00 Aligned_cols=27 Identities=44% Similarity=0.887 Sum_probs=10.1
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHH
Q 047305 201 PNKFTYTIVISGLCQINRADEAYRLFL 227 (767)
Q Consensus 201 p~~~~~~~li~~~~~~g~~~~a~~~~~ 227 (767)
||..+|+++|.+|++.|++++|.++|+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333333333333333333
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=5.4e-06 Score=82.45 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=68.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
.++..+...++++.|+++++++.+..|. +...++.++...++..+|++.+.+.- +..|.+...+..-+..|...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL-~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEAL-KENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCC
Confidence 3334444445555555555555544432 33344555555555555555555521 1235555555555666666666
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
++.|+.+.+++.+.. |.+..+|..|+.+|...|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666664 5556666666666666666666666666553
No 143
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=4.6e-07 Score=54.47 Aligned_cols=32 Identities=41% Similarity=0.894 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.4e-05 Score=73.66 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=99.3
Q ss_pred CCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 494 PDIITYNSLI-NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 494 ~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
|....|..+- .++...|++++|...--...+.... +......-..++.-.++.+.|...|++.+.. .|+...-...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3344454443 4556777888887776666654211 2221111112334456777888888887764 3443222111
Q ss_pred -------------HHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc
Q 047305 573 -------------MTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL 635 (767)
Q Consensus 573 -------------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~ 635 (767)
..-..+.|++..|.+.|.+++..+|++... |.+.+.+..+.|+..+|+..-.+. ..++|...
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHH
Confidence 112346677888888888888777776543 345566677777777776665552 22446556
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.+|...+.++...++|++|++.|+++.+..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666677777777777777777777776543
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=3.9e-06 Score=84.18 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=82.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..+...|++++|++.|+++++..|.++.++..++.+|...|++++|+..+.+.. ...|.++.+|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445577888888888888888888888888888888888888888887777742 245777778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+|+..|+++++.+ |.++.....+..+..
T Consensus 88 eA~~~~~~al~l~-P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLA-PGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888888876 666666555554433
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0003 Score=63.43 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 248 FCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFR----AKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323 (767)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (767)
+.+..+++-|.+.+++|.+. .+..+.+-|..+|.+ .+.+.+|.-+|+++.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444555555555555442 133344433333332 23455555555555442 23455555555555566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 324 VKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGL 358 (767)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (767)
+++|..++++....... ++.+...++-.-...|.
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 66666666665555433 44444444444444443
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=3.3e-06 Score=77.37 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=91.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.-..+.++|++|+..+.+.- ..+|.++..|.+.+.+|.+.|.++.|++-.++++..+ |....+|-.|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 455678899999999888832 3579999999999999999999999999999999998 77788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
++|++.|+++++ +.|+..++-.-+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999999987 669988766655443
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0001 Score=70.52 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=122.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHH-------
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY---GTL------- 537 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l------- 537 (767)
..++.-.|+++.|..+--..++.... +......-..++...++.+.|...|++.+.. .|+...- ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 45677789999999888887766322 3333323334555778899999999998876 4444321 111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 538 ---INGLQRVDREEDAFRIFGQMPQN---GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 538 ---~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
.+-..+.|++..|.+.|.+.+.. +.+++...|.....+..+.|+..+|+.-.+.+++.+|....++...+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 12235789999999999999863 345566777777778889999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHH-hhhcCCCCC
Q 047305 612 QKGEVENAIQGLLE-MDFKLNDFQ 634 (767)
Q Consensus 612 ~~g~~~~A~~~~~~-~~~~~~p~~ 634 (767)
..+++++|++.+.+ +....++..
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccch
Confidence 99999999999999 554434333
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.37 E-value=1.2e-05 Score=84.16 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=111.2
Q ss_pred CCCCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC--------CHHHHHHHHHH-hh
Q 047305 562 CTPSPAVYKSLMTWSCR--R---RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG--------EVENAIQGLLE-MD 627 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~-~~ 627 (767)
.+.+...|..++.+... . ++.+.|+.+|+++++.+|++..++..++.+|.... +...+.+.+.+ ..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45677777777776332 2 34778999999999999999888887766664431 12233333333 22
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
...+|.++.+|..++..+...|++++|...++++++.+ |+...|..++.++...|+.++|.+.|+++.+.+ |..++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 22356677778889888888999999999999999987 478899999999999999999999999998744 77665
Q ss_pred HHHHHHHHh
Q 047305 708 CNYLLRSLL 716 (767)
Q Consensus 708 ~~~l~~~l~ 716 (767)
.++...+.
T Consensus 489 -~~~~~~~~ 496 (517)
T PRK10153 489 -LYWIENLV 496 (517)
T ss_pred -HHHHHhcc
Confidence 33444443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.36 E-value=8e-06 Score=68.09 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+..++.++.+.|++++|+..++++.... |. .+.++..++.++...|+.++|...++++++.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4445555555555555555555554432 11 1334455555555555555555555555543
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=5.6e-07 Score=69.05 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=27.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
+..++.+|.+.|++++|+.++++ .+.+ +.++.+...++.++.+.|++++|+++|++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 44455555555555555555555 3222 23334444445555555555555555544
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-05 Score=74.29 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---CCHHHHHHHHHHH
Q 047305 585 AFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---GQVKEALNIFSVL 661 (767)
Q Consensus 585 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 661 (767)
...-++.-++.+|+|...|..++.+|...|++..|..-|.+.. +..|+++..+..++.++..+ ..-.+|..+++++
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL-RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3333455567778888888888888888888888777777632 23577777777777776655 2456777888888
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 662 VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+..+ +.|..+...|+..++..|++.+|...|+.++...
T Consensus 220 l~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 220 LALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8777 7777777788888888888888888888887643
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.32 E-value=0.00011 Score=62.00 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-ccCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccchH
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-DISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAPYT 639 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~~~ 639 (767)
..|+...-..+...+.+.|++.+|...|++.+. ..-.++..+..++.+....+++..|...++++ +....-.++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 467777777788888899999999999988884 46667777788889999999999998888884 3332233555678
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.++.+|...|++.+|...|+.+...- |++.....++..+.++|+.++|...+..+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88999999999999999999998874 7777777788889999988888877766543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=1.1e-05 Score=67.33 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC---CccchHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF---QLAPYTI 640 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~---~~~~~~~ 640 (767)
.++..++..+.+.|++++|.+.|.++++..|+++ .+...++.++.+.|++++|+..+.++... .|. .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCCCcccHHHHH
Confidence 3556677778888999999999998888877663 46677888899999999998888884322 244 3456888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
++.++.+.|++++|+..++++++.. |.++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 8888888899999999999988876 5555443
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=2.9e-06 Score=61.29 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
.++..+...|++++|+..|+++++.. |.++.++..++.++...|++++|+..|+++++.. |++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD--PDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence 46777888888888888888888876 7788888888888888888888888888887644 554
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=1.1e-05 Score=80.97 Aligned_cols=106 Identities=10% Similarity=-0.028 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
..+..+...|++++|+..+.+.. ...|.++.+|..++.+|...|++++|+..++++++.+ |.++.++..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 44677788999999999999843 2469999999999999999999999999999999997 888999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 685 YLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
++++|+..|+++++.+ |+.......+..
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 9999999999999754 776665554433
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.6e-06 Score=66.47 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=51.9
Q ss_pred cCChhHHHHHHHHHHhccCCC--ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGR--DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.|+++.|+.+++++++..|.+ ...+..++.+|.+.|++++|+..+.+. +..|.++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 467777777777777777643 344455677777777777777777662 2234454555566777777777777777
Q ss_pred HHHHH
Q 047305 657 IFSVL 661 (767)
Q Consensus 657 ~~~~~ 661 (767)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=3.5e-06 Score=61.80 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=57.1
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHHC
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG-YLDLAMDVFLYTLKN 699 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 699 (767)
++..|..+|..+...|++++|+..|+++++.+ |.++.++..++.+|...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34568899999999999999999999999987 788889999999999999 799999999998764
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=1.7e-05 Score=63.15 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
.++..+...|++++|+..+.+... ..|.+..++..++.++...|++++|...++++.+.. +.++.++..++.++...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE-LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344444455555555544444211 124443445566666666666666666666666554 445556666666666666
Q ss_pred ChhHHHHHHHHHHH
Q 047305 685 YLDLAMDVFLYTLK 698 (767)
Q Consensus 685 ~~~~A~~~~~~~~~ 698 (767)
++++|...++++++
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666666543
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.13 E-value=1.7e-05 Score=75.43 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc---cCCC---ccchHHHHHHHHhcCCHHHHHHHHHH-h----hhcCCCCCcc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRD---ISGR---DDESMKSIEEFLQKGEVENAIQGLLE-M----DFKLNDFQLA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~p~~~~ 636 (767)
.|..+...|.-.|+++.|+...+.-++. +.+. ..++.+++.++.-.|+++.|++.++. + +.+.....+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555667788887776554422 2222 23556777888888888888877776 1 1222223344
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHH----cC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVE----CK-AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...+|+++|.-...+++|+.++.+-+. .+ ..-..-+++.|+.+|...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 578888888888889999988887432 11 1123456788888998888888888888777664
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=7.5e-05 Score=74.43 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++.++. .+.+...+..-++.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 345555666777888888888877662 33 3445667777777777788887777754 244566666666667777
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
++++.|..+.+++++..|.+-..|..++.+|...|++++|+-.+..
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888766665
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=9.8e-06 Score=59.23 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=51.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLR 713 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 713 (767)
...|++++|++.|+++.... |.++.++..++.+|.+.|++++|..++++++... |+.+.+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHHh
Confidence 46788999999999998886 7788888899999999999999999999888754 77655555543
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=2.2e-05 Score=62.44 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD 648 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 648 (767)
+..++..+...|++++|...++++++..|.++.++..++.++...|++++|++.+.+... ..|.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHHH
Confidence 445566667778888888888888887777777777788888888888888777776322 2466666688888888888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 047305 649 GQVKEALNIFSVLVECK 665 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~ 665 (767)
|++++|...++++.+.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 88888888888877654
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.2e-05 Score=69.82 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=89.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCccchH
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLNDFQLAPYT 639 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p~~~~~~~ 639 (767)
+.|...|..|..+|...|+.+.|...|.++.+..|+++..+..++.++.... ...++...+.+. .+.+|.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a-l~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA-LALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-HhcCCccHHHHH
Confidence 6688999999999999999999999999999999999999999988876532 234565555553 345799999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
.|+..+...|++.+|...|+.|++.. |++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL-PAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999987 444
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.06 E-value=4.9e-05 Score=67.65 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=19.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+..++.+|...|++++|+..+++++... +.....+..++.++.
T Consensus 75 ~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 75 LYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4444444444444444444444444433 333333444444444
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.05 E-value=4.5e-05 Score=67.85 Aligned_cols=99 Identities=9% Similarity=-0.089 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---ccchHHHHHHHHhcCCHHHHHHH
Q 047305 547 EEDAFRIFGQMPQ-NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR---DDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 547 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
+..+...+..+.+ .+.......+..++..+...|++++|...|++++...|+. +.++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555655542 2222234455666666777788888888888887665543 23667778888888888888777
Q ss_pred HHHhhhcCCCCCccchHHHHHHHh
Q 047305 623 LLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 623 ~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+.+... ..|.....+..++.++.
T Consensus 95 ~~~Al~-~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALE-RNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHH-hCcCcHHHHHHHHHHHH
Confidence 777322 34666666777777777
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=6.9e-05 Score=63.09 Aligned_cols=95 Identities=9% Similarity=-0.079 Sum_probs=74.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
..+..+.-+...|++++|...|.-+-. .+|.++..|..|+.++...+.|++|+..|..+...+ +.||....+.+.+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 344556666777888888666655432 467778878888888888888888888888887776 677888888888999
Q ss_pred hcCChhHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~ 698 (767)
..|+.+.|+..|+.+++
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999998888876
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.01 E-value=6.9e-05 Score=70.84 Aligned_cols=100 Identities=7% Similarity=0.038 Sum_probs=65.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhh--cCCCCCccchHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDF--KLNDFQLAPYTI 640 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~p~~~~~~~~ 640 (767)
...|......+.+.|++++|+..|+.+++..|+++ .++++++.+|...|++++|+..+.++.. ..+|..+.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34455555544567888888888888888888774 5666777777777777777766666432 223334455566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
++.++...|++++|..+|+++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6666666677777777777666653
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=9.6e-05 Score=65.98 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=33.5
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC--------------hhHHHHHHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY--------------LDLAMDVFLYTLK 698 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~ 698 (767)
.+..++.++.+.|++++|+..++++++.. |.+...+..++.+|...|+ +++|.++++++++
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555556666666555555543 4445555555555555544 4555555555544
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00013 Score=65.20 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+..+...+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3567777788888999999999998876432222 45777788888889999999999999998888888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+...|+...+...+... ...+++|++.++++...+
T Consensus 116 ~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhC
Confidence 88888876664332221 123788888888888765
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.99 E-value=3.7e-05 Score=57.08 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=54.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYL 711 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 711 (767)
..+|.+.+++++|++.+++++..+ |.++..+...+.++...|++++|...|+++++.+ |++.....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 457888899999999999998887 7788888889999999999999999999998755 666554443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.98 E-value=2.3e-05 Score=56.55 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
++..+...|++++|++.+.++.. ..|.++.++..++.++...|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666432 236666667777777777777777777777776654
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.00055 Score=66.67 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
..|...+++++|...|.++.+. +-+ .-...|.....+|. .+++++|++.|++++ ..|...
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~--------------~~y~~~ 107 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAI--------------EIYREA 107 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHH--------------HHHHHC
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHH--------------HHHHhc
Confidence 3444555555555555554321 100 01223333333343 336666666666654 445555
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-CCHHHHHHHHHHHHHcCC---CC--ChHhHHHHHHHHHhcCChh
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-GQVKEALNIFSVLVECKA---IV--TPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~ 687 (767)
|++..|... +..++.+|... |++++|++.|+++.+.-- .+ -..++..++.++.+.|+++
T Consensus 108 G~~~~aA~~---------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKC---------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHH---------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 655555322 44445555555 666666666666643210 11 1234445566666666666
Q ss_pred HHHHHHHHHHHC
Q 047305 688 LAMDVFLYTLKN 699 (767)
Q Consensus 688 ~A~~~~~~~~~~ 699 (767)
+|.+.|+++...
T Consensus 173 ~A~~~~e~~~~~ 184 (282)
T PF14938_consen 173 EAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.00019 Score=58.18 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC---CccchHHHHHHHH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG---RDDESMKSIEEFL 611 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 611 (767)
+..++...|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44555666666666666666666554433 234445555566666666666666666666555 3333344455555
Q ss_pred hcCCHHHHHHHHHH
Q 047305 612 QKGEVENAIQGLLE 625 (767)
Q Consensus 612 ~~g~~~~A~~~~~~ 625 (767)
..|+.++|++.+..
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 56666666555554
No 175
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.022 Score=54.69 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhh--HHHHHH--HHH-hcCC
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG-LRPDSVT--YGTLIN--GLQ-RVDR 546 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~~~l~~--~~~-~~~~ 546 (767)
+.|+.+.|...-+.....-.. -...+...+...+..|+++.|+++++.-.... +.++..- --.|+. +.. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 456666666666655544211 23456666777777777777777777655432 2333211 111111 111 1223
Q ss_pred HHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH-HHHH
Q 047305 547 EEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI-QGLL 624 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 624 (767)
...|...-.+..+ +.|+.. .--.-...+.+.|+.-++-.+++.+.+..|.... ...+.+.+.|+..... +...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---a~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---ALLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH---HHHHHHhcCCCcHHHHHHHHH
Confidence 5556655555554 233321 2222344566777777777777777776654432 2344555566544331 2222
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLKN 699 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 699 (767)
++. ...|++..+...++.+-...|++..|..--+.+... .|...+|..|+++-... |+-.+++..+-++++.
T Consensus 320 ~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 222 234777777777777777788888777777766654 46667777777776655 8888888887777764
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00028 Score=57.25 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
...+++++-..|+.++|+.+|+++++.|+... ...+..++..|...|++++|..++++.+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555443222 22344455555555555555555555543
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00035 Score=67.50 Aligned_cols=141 Identities=17% Similarity=0.052 Sum_probs=105.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
...|.+.|++..|...|++++......... +.++. +....+. ...+.+++.+|.+.++|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~------------~~ee~-~~~~~~k-------~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSF------------DEEEQ-KKAEALK-------LACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccC------------CHHHH-HHHHHHH-------HHHhhHHHHHHHhhhhHH
Confidence 456778999999999999987654332221 11222 2222221 123889999999999999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|+..-.++++.+ ++|..++..-+.+|...|.++.|+..|+++++ +.|++..+..=+..+..+..+..+...++|.+
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999998 45888777765555553444424555788888
Q ss_pred HHHc
Q 047305 733 MKSV 736 (767)
Q Consensus 733 ~~~~ 736 (767)
|-..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8754
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=2e-05 Score=57.54 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=37.9
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA 636 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~ 636 (767)
+.|++++|++.|+++++..|.++.+...++.+|.+.|++++|...+.++.. ..|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK-QDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-GGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCHHH
Confidence 567777777777777777777777777777777777777777666666332 2355544
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0033 Score=59.23 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
.+|...|+++++..|+..-+- +|...+..+.... ..--..++..|.+.|+|.-|+.-++.++
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 456777888888888764432 2222222211110 0003366778888899999999999988
Q ss_pred HcCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 663 ECKAIV---TPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 663 ~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.- |. .+.+...++.+|...|..++|....+..
T Consensus 203 ~~Y-p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 203 RDY-PDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHC-CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 653 33 3556777888888999988888877654
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.0013 Score=64.13 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----h-HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-----P-PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..++.++.+.|+|++|+++|+++.......+ . ..+...+-++...|+.-.|...+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666667777777777777777654322111 1 1222334455666777777777777643
No 181
>PRK11906 transcriptional regulator; Provisional
Probab=97.85 E-value=0.00064 Score=67.51 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHH---hccCCCccchHHHHHHHHhc---C------CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 582 FSLAFSLWLQYL---RDISGRDDESMKSIEEFLQK---G------EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 582 ~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
.+.|..+|.+++ +.+|....++-.+++++... | +..+|.+...+ ....+|.++.+...+|.++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r-Aveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY-VSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHhhc
Confidence 455666666666 56666666666665555432 1 12233333322 23356777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhhcCCccHHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY---LLRSLLFSKDNKKVHA 726 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~a 726 (767)
+++.|...|+++...+ |....++...++...-.|+.++|.+.++++++.+ |-...... .+..++ ..+ .++|
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~-~~~--~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYV-PNP--LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHc-CCc--hhhh
Confidence 7888888888887776 6777777777777788888888888888776633 54333222 222333 343 5666
Q ss_pred HHHHHH
Q 047305 727 YHLLCR 732 (767)
Q Consensus 727 ~~~~~~ 732 (767)
..++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666544
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0016 Score=55.36 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=103.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-IVTPPSCVKLIHGLC 681 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 681 (767)
.+.++....+.|++.+|...+.+...+....++..+..++++....++...|...+++.-+.+. ..+|.....++..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 3578999999999999999999977777788888899999999999999999999999987641 124677788999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
..|++.+|+..|+.++. .-|++....+....|. ++|+ .+++..-+..+
T Consensus 172 a~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La-~qgr-~~ea~aq~~~v 219 (251)
T COG4700 172 AQGKYADAESAFEVAIS--YYPGPQARIYYAEMLA-KQGR-LREANAQYVAV 219 (251)
T ss_pred hcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHH-Hhcc-hhHHHHHHHHH
Confidence 99999999999999986 4588877677777777 6775 55555544443
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.0035 Score=59.05 Aligned_cols=176 Identities=8% Similarity=-0.035 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-h---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch---HHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-V---YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES---MKS 606 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l 606 (767)
+-.....+...|++++|...|+.+.... |... . .-.++.++.+.+++++|...+++.++..|+++.+- ..+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3344555677889999999999988742 3322 2 23456677888999999999999998888887654 333
Q ss_pred HHHHHhcCC------------------HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 607 IEEFLQKGE------------------VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 607 ~~~~~~~g~------------------~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
+.++...++ ..+|+..+.++... -|++ .-..+|...+..+.+.-
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S--------------~ya~~A~~rl~~l~~~l--- 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNS--------------QYTTDATKRLVFLKDRL--- 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCC--------------hhHHHHHHHHHHHHHHH---
Confidence 444333321 12233333332211 2333 22344444333332210
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 669 TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
...-..++.-|.+.|.+..|+.-++.+++.- |+.+ ....+..++. ..|. .++|....+.+.
T Consensus 175 -a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y--p~t~~~~eal~~l~~ay~-~lg~-~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY--PDTQATRDALPLMENAYR-QLQL-NAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHH-HcCC-hHHHHHHHHHHh
Confidence 1112357778999999999999999999864 4432 2334555555 7777 788877766554
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.79 E-value=0.00034 Score=66.92 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 047305 317 GLSEAGKVKDAMKLLSDMRERGIVPDT----YCYNALIKGFCDLGLLDQARSL 365 (767)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 365 (767)
-+++.|+......+|+...+.|.. |. ..|..+..+|...+++++|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 345566666666666666555433 22 2233344444444445544443
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00058 Score=62.75 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhh--cCCCCCccchHHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDF--KLNDFQLAPYTIWL 642 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~p~~~~~~~~l~ 642 (767)
.|+.-++.+ +.|++.+|...|...++..|+.+ .++++++.++...|++++|...+..+.. +..|..+.++.-|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 677766644 78889999999999999888875 4566777777777777777777776422 23344455667777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.+..+.|+.++|-.+|+++.+.- |..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y-P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY-PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC-CCCHH
Confidence 77777777777777777776653 44443
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.73 E-value=0.00061 Score=64.50 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred chHHHHHHH-HhcCCHHHHHHHHHHhhhcCCCCC---ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHH
Q 047305 602 ESMKSIEEF-LQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCV 674 (767)
Q Consensus 602 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 674 (767)
..+..+..+ .+.|++++|+..|.+.... .|++ +.++..+|.+|...|++++|+..|+++++.. |. .+.++.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence 334444444 5679999999999885332 4665 4679999999999999999999999998754 33 467777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.++.++...|++++|...|+++++.. |++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y--P~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY--PGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCCH
Confidence 88999999999999999999998754 6554
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.0001 Score=53.97 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHc
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVEC 664 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 664 (767)
+..++..+...|++++|+..+.+ +. .+|+++.+|..++.+|...| ++++|++.++++++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34444444444444444444444 22 13555555555555555555 455555555555544
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.71 E-value=0.0024 Score=54.07 Aligned_cols=88 Identities=11% Similarity=-0.110 Sum_probs=76.3
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+...|++++|..+|.-+.-.+|.++.-+..++.++...+++++|+..+.-... .+++++.+....+.+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCccchHHHHHHHhCCHHHHH
Confidence 45789999999999999899999999889999999999999999888777322 34788888999999999999999999
Q ss_pred HHHHHHHHc
Q 047305 656 NIFSVLVEC 664 (767)
Q Consensus 656 ~~~~~~~~~ 664 (767)
..|+.+++.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999999873
No 189
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.70 E-value=6.7e-05 Score=45.97 Aligned_cols=33 Identities=45% Similarity=0.872 Sum_probs=16.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCC
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCSPD 237 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 237 (767)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555444444
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.0011 Score=66.67 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 233 GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD--GFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVL 310 (767)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 310 (767)
+.+.+......+++.+....+++.+..++.+.... ....-..+..++++.|...|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777778888888888888888888888764 2223345667889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 311 YGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDL 356 (767)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (767)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777666777776666666554
No 191
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.67 E-value=9.2e-05 Score=45.33 Aligned_cols=33 Identities=48% Similarity=0.918 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047305 310 LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD 342 (767)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (767)
+||.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 192
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.64 E-value=9e-05 Score=44.97 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=13.9
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCC
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCS 235 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 235 (767)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0017 Score=68.22 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=56.0
Q ss_pred HHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 584 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
.+.+...+++. ..|.++.++..++..+...|++++|...+.+ +.. .| +..+|..+|.++...|+.++|.+.+++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444333 2555566666666666677888888777777 332 35 355688888888888999999999988
Q ss_pred HHHcCCCCCh
Q 047305 661 LVECKAIVTP 670 (767)
Q Consensus 661 ~~~~~~~~~~ 670 (767)
+...+ |-++
T Consensus 479 A~~L~-P~~p 487 (517)
T PRK10153 479 AFNLR-PGEN 487 (517)
T ss_pred HHhcC-CCCc
Confidence 88876 4444
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.63 E-value=0.00019 Score=71.01 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH---hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP---SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+|+++..+++++.+|.+.|++++|+..|+++++.+ |.+.. +|+.++.+|...|+.++|+..++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555556666666666666666666666665554 33332 355566666666666666666666654
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00086 Score=67.33 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 172 SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 172 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
.++++.|.+.|..+.++.++..=...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 344444444444444444444444444444555555555555455555444444444443333333344433333333
No 196
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.60 E-value=0.00012 Score=44.39 Aligned_cols=32 Identities=31% Similarity=0.730 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 310 LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP 341 (767)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (767)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.061 Score=55.77 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047305 305 EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-GIVP--------DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSL 375 (767)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (767)
.|.+..|..+.......-.++-|+..|-+.... |++. +...-..-+.+ --|++++|++++-++.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 467778888777666666666666666554322 2211 01111111222 24889999999888766653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF--PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
.+..+.+.|++-.+.++++.--. +.. .-..+++.+...+.....|++|.+.|....
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------------- 823 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------------- 823 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 45667778888777666543111 100 113578888888888888999988887652
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
.....++++....++++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+. + .|.
T Consensus 824 ---------~~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk--- 882 (1189)
T KOG2041|consen 824 ---------DTENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK--- 882 (1189)
T ss_pred ---------chHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH---
Confidence 1123344444444444443333333 224445566777777777777777665432 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
..+.+|...+++.+|.++.++.
T Consensus 883 --aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345666677777777666554
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.57 E-value=0.0094 Score=54.69 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
+...+|...|+.+++..|+.+-+-. |...+..+.... ..--..++..|.+.|.+..|+.-++
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4456788888888888888766532 222222211100 0013457888999999999999999
Q ss_pred HHHHcCCCCC---hHhHHHHHHHHHhcCChhHHH
Q 047305 660 VLVECKAIVT---PPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 660 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+++.- |.+ ..++..++.+|.+.|..+.|.
T Consensus 166 ~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 988763 444 334667778888888877443
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.016 Score=52.51 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCHhhHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-----GCTPSPAVYKSL 572 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 572 (767)
..+.++.++.-.|.+.-...++.+.++...+.++.....+.+.-++.|+.+.|..+|++..+. ++.....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666677777777888888887655556666777777778888888888888866542 222233333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
...|.-.+++..|...|.+++..+|.++.+.++.+-+..-.|+...|++.+..+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666777777777777777777777777777777777777777777766654
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.53 E-value=0.089 Score=50.24 Aligned_cols=199 Identities=16% Similarity=0.039 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH-
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT- 574 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 574 (767)
..+......+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444445555555555555555555431 112233344444444555555555555555555432221 111111111
Q ss_pred HHHhcCChhHHHHHHHHHHhccCC---CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHHHHhhcCC
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISG---RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~ 650 (767)
++...|+++.|...|.+++...|. ...........+...++.+.++..+.+.... .+. ....+..++..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHccc
Confidence 445555555555555555443331 1222223333344455555555555542211 122 23335555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+++|...+..+.... +.....+..++..+...|.++++...+++.+.
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555443 22233344444444444445555555555544
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.16 Score=52.92 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=109.0
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhC-CCCc--------CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSG-NVSV--------VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQP 131 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 131 (767)
+.+..|..+.......-.++.|...|-++..- |+.. +...-..=+.+| -|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 35667777776666666666666666554321 1110 111111112222 377888888887776543
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 132 DVYIYNAVLNIAFRKQLFLLALAVYYEMVKL-NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVI 210 (767)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 210 (767)
..+..+.+.|++..+.+++..--.. .-..-..+|+.+...+.....|+.|.+.+..-.. ....+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 2345556677777766665431110 0011134566777777777777777776664332 12335
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 047305 211 SGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYD 290 (767)
Q Consensus 211 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 290 (767)
.++.+...+++-..+...+. -+......+..++.+.|.-++|.+.+-+... | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHH
Confidence 55555555554444433332 2445566677777777777777666543211 1 23455666666777
Q ss_pred HHHHHHHH
Q 047305 291 EAYAWYRK 298 (767)
Q Consensus 291 ~A~~~~~~ 298 (767)
+|.++-+.
T Consensus 896 ~avelaq~ 903 (1189)
T KOG2041|consen 896 EAVELAQR 903 (1189)
T ss_pred HHHHHHHh
Confidence 77666544
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=6.4e-05 Score=56.67 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=50.7
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CC-CCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KA-IVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..+++.++.+|...|++++|++.|+++++. |. .++ ..++..++.+|...|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456899999999999999999999998643 20 111 45688899999999999999999998864
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0015 Score=63.30 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR-RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+|..+++...+.+..+.|+.+|.++++.+ ..+..+|...+.+-.. .++.+.|..+|+.+++..|.+...+...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45566666666666677777777776432 2334445444444223 345555777777777777777766666666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC--ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQ--LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..|+.+.|..++++......+.. ..+|..++..=.+.|+++.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777666666322222221 234666666666667777777777777665
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.51 E-value=0.021 Score=52.37 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL 493 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (767)
..+-.....+...|++.+|...|+++.... ...+....+...++.++.+.|+++.|...+++..+..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY-----------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 334445556677888888888888875211 122344556667777788888888888888887766332
Q ss_pred CCHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 494 PDIITYNSLINGFCKV-------------GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.....+...+.+.+.. +...+|...|+.+ +.-|-.+....+|...+..+.+.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH
Confidence 2222222222222111 1112333333333 33333344445554444444321
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chHHHHHHHHhcCCHHHH
Q 047305 561 GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 561 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 619 (767)
-...-..+++.|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|
T Consensus 140 ----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 140 ----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0111123566688888888888888888888887654 345567777777776644
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.0016 Score=50.57 Aligned_cols=69 Identities=14% Similarity=0.327 Sum_probs=33.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 181 SGKTEVAIKMLDEMTQRGI-LPNKFTYTIVISGLCQIN--------RADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 181 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
.+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++..+.
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3444444444444444444 444444444444433321 23344555555555556666666665555543
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.50 E-value=0.0016 Score=51.57 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=64.5
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCc---cchHHHHHHHhhcCC
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQL---APYTIWLIGLCQDGQ 650 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~---~~~~~l~~~~~~~g~ 650 (767)
++...|+.+.|++.|.+++...|.++.+|++.+.++.-.|+.++|+..+.+ +... .|... .+|...+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888888888888888888888888888888888777777 3322 22222 245566667777777
Q ss_pred HHHHHHHHHHHHHcC
Q 047305 651 VKEALNIFSVLVECK 665 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~ 665 (767)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776666
No 207
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0022 Score=49.78 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEFDC-QPDVYIYNAVLNIAFRKQ--------LFLLALAVYYEMVKLNCLPNIVTFSL 173 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 173 (767)
..|..+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.+++. .+...+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 777777777777666543 12234444555555555555555555
Q ss_pred HHHHH
Q 047305 174 LINGL 178 (767)
Q Consensus 174 l~~~~ 178 (767)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 54444
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.49 E-value=0.06 Score=51.46 Aligned_cols=221 Identities=16% Similarity=0.027 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047305 510 GNINGALKLFKELQLKGLR-PDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLMTWSCRRRKFSLAFS 587 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (767)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544221 12455666667777788888888777777642 234455666667777777788888888
Q ss_pred HHHHHHhccCCCccchHHHHH-HHHhcCCHHHHHHHHHHhhhcCCC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 588 LWLQYLRDISGRDDESMKSIE-EFLQKGEVENAIQGLLEMDFKLND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.+.......+.+......... .+...|++++|...+.+... ..| .....+......+...+++++|+..+.++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888888776666555555555 78888888888888887532 344 2333455555556777888888888888877
Q ss_pred cCCCC-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 664 CKAIV-TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 664 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
.. +. ....+..++..+...+++++|...+..+.... |+ ..........+. ..+. .+++...+++....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLL-ELGR-YEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHH-HcCC-HHHHHHHHHHHHHh
Confidence 65 44 46777788888888888888888888887643 44 333444444444 5555 77777777776543
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.11 Score=50.15 Aligned_cols=290 Identities=13% Similarity=0.044 Sum_probs=184.3
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcC
Q 047305 416 FNALIDGLC--KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV--EQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 416 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
|..|-.++. ..|+-..|.+.-.+.. +-...|.+.+..++ +.-.-.|+++.|.+-|+.|...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~--------------~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d- 149 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARAS--------------KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD- 149 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHH--------------hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-
Confidence 334444433 3567777766665542 11223333333333 3445679999999999999863
Q ss_pred CCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHh-
Q 047305 492 NLPDII--TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPA- 567 (767)
Q Consensus 492 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~- 567 (767)
|... ....|.-.-.+.|..+.|..+-++....... -...+...+...+..|+++.|+++++.-.+.. +.++..
T Consensus 150 --PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 150 --PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred --hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 2222 2233333345789999999998888765322 34567888899999999999999998876532 333322
Q ss_pred -hHHHHHHH--H-HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 568 -VYKSLMTW--S-CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 568 -~~~~l~~~--~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.-..|+.+ . .-.-+...|...-.+..+..|+-.......+.++++.|+..++-++++..-. ..| ++ -..+.+
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~eP-HP--~ia~lY 302 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-AEP-HP--DIALLY 302 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-cCC-Ch--HHHHHH
Confidence 11122221 1 1234678888888889999999999999999999999999999888887431 122 12 223344
Q ss_pred HHhhcCCHHHHHHHHHHH---HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cC
Q 047305 644 GLCQDGQVKEALNIFSVL---VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF-SK 719 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 719 (767)
.+.+.|+ .++.-++++ .... +.+.+....++.+-...|++..|+.--+.+.+.. |....+. |+.-.-. ..
T Consensus 303 ~~ar~gd--ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~l-LlAdIeeAet 376 (531)
T COG3898 303 VRARSGD--TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYL-LLADIEEAET 376 (531)
T ss_pred HHhcCCC--cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHH-HHHHHHhhcc
Confidence 4555555 444444444 3443 6778888899999999999999999888876532 4433322 2222221 34
Q ss_pred CccHHHHHHHHHHHH
Q 047305 720 DNKKVHAYHLLCRMK 734 (767)
Q Consensus 720 ~~~~~~a~~~~~~~~ 734 (767)
|+ -.++..++-+..
T Consensus 377 GD-qg~vR~wlAqav 390 (531)
T COG3898 377 GD-QGKVRQWLAQAV 390 (531)
T ss_pred Cc-hHHHHHHHHHHh
Confidence 65 677777777755
No 210
>PRK11906 transcriptional regulator; Provisional
Probab=97.47 E-value=0.0039 Score=62.15 Aligned_cols=147 Identities=9% Similarity=-0.075 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhh-CCCCCC-HhhHHHHHHHHHh---------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 547 EEDAFRIFGQMPQ-NGCTPS-PAVYKSLMTWSCR---------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 547 ~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+.|..+|.+++. ..+.|+ ...|..+..++.. .....+|.+.-+++++.+|.|+.+...++.+....|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 3567777777762 113343 3344444433221 2355678888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCChhHHHHHH
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH--GLCKRGYLDLAMDVF 693 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~ 693 (767)
++.|...+.+.. ..+|+.+.+|...++.+...|+.++|.+.++++.+.. |--..+...-.+ .|+-.+ +++|+.+|
T Consensus 354 ~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 999988877732 2569999999999999999999999999999998886 444333333333 455554 78888887
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 654
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.068 Score=52.40 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLF 284 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (767)
+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... .-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444455555566555555544442 24555566666666666666655544321 123455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 285 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666665555441 1 133445555666666655543
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.38 E-value=0.00066 Score=50.28 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=16.2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
|+++..+...+.++...|++++|.+.++++++.+
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4444444444444444444444444444444443
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.31 E-value=0.012 Score=50.86 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....++.+.+.+.+.+++.....+.-.-... ..-.......+.+.- ..++..++..+...|++++|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLRELY-------LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHHHH
Confidence 3456788888888888886543332211000 111112222333321 123667788888899999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRV 707 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 707 (767)
..+++++..+ |-+...+..++.+|...|+..+|.++|+++.+ .|+.|++.+
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 9999999987 88888999999999999999999999998754 366666654
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0037 Score=60.65 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-----CCC---------CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN-----GCT---------PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM 604 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 604 (767)
+.+.+.|++..|...|++++.. +.+ .-..++..++.+|.+.+++.+|++..+++++..|+|..+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455556666666665554431 000 11223344445555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
..+.++...|+++.|+..|.++. +..|+|-.+-..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIK 333 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHH
Confidence 55555555555555544444421 123444443333333
No 215
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.26 E-value=0.00041 Score=40.89 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=10.5
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 206 YTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 206 ~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33444444444444444444444433
No 216
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.25 E-value=0.00036 Score=41.15 Aligned_cols=29 Identities=45% Similarity=0.768 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.0053 Score=56.58 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC--CCChHhHHHHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFK--LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA--IVTPPSCVKLIH 678 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 678 (767)
.+..+..+...|++..|...|.+...+ ..+-.+.++.-|+.+++..|++++|...|..+.+... +..|+.+..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566677788999999999999984322 2233456799999999999999999999999976431 334778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 679 GLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
+..+.|+.++|...|+++++.- |+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y--P~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY--PGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC--CCCH
Confidence 9999999999999999998865 5543
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.072 Score=52.64 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 499 YNSLINGFCKVGNINGALKLFKELQLKG---LRPDSVTYGTLINGLQR---VDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
...++-+|....+++..+++++.+.... +.-....-...+-++.+ .|+.++|++++..++...-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3455667889999999999999998651 11122223345566777 89999999999996665567888899888
Q ss_pred HHHHHh---------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 573 MTWSCR---------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 573 ~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
++.|.. ....++|++.|.+..+..|+. -.-.+++..+...|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 877542 235788999999888877433 233344445555554
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.20 E-value=0.00069 Score=50.97 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
.++..+..+|...|++++|++.|+++++ ...... ...|.....+..++.+|.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------------~~~~~~-~~~~~~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD---------------------------IEEQLG-DDHPDTANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------------------HHHHTT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------HHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766652 111111 011233456889999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047305 647 QDGQVKEALNIFSVLVE 663 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~ 663 (767)
..|++++|+++++++.+
T Consensus 58 ~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 58 RLGDYEEALEYYQKALD 74 (78)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999999865
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.17 Score=46.08 Aligned_cols=145 Identities=11% Similarity=-0.020 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.-.|.+.-....+.+.++...+.++.....++.+-.+.|+.+.|..+|++.-+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----------------- 242 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT----------------- 242 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----------------
Confidence 344455555556666666666666665445556666666666666666666666665442110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.. +.. ......+..+.+.+|.-++++.+|...+.++...+ +.++...+.-+-++.-.|+..+|++.+
T Consensus 243 -------~k---L~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 243 -------QK---LDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred -------hh---hhc--cchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 00 100 01122234455556666778888888888887776 667777777777777778888888888
Q ss_pred HHHHHCCCCCCHHHHHH
Q 047305 694 LYTLKNGFILRPRVCNY 710 (767)
Q Consensus 694 ~~~~~~~~~~~~~~~~~ 710 (767)
+.++... |.+.+-+.
T Consensus 310 e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 310 EAMVQQD--PRHYLHES 324 (366)
T ss_pred HHHhccC--Cccchhhh
Confidence 8886643 55544443
No 221
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.0041 Score=60.29 Aligned_cols=131 Identities=13% Similarity=-0.039 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ-KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
.+|..++....+.+..+.|+.+|.++++..+....+|...+..-.. .++.+.|.++++... +..|.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-k~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-KKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-HHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHH
Confidence 4677788888888889999999999997767777888888877555 556666888887732 23588888899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+.|+.+.|..+|++++.. ++++. ..|...+..=.+.|+++....+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999866 34443 57888888888899999999999988774
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.16 E-value=0.15 Score=46.85 Aligned_cols=202 Identities=14% Similarity=0.051 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH---H
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNG--CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM---K 605 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~ 605 (767)
...|+..+ .-.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.+++++|+...++.++..|.++.+-+ .
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444443 4456788899999888887642 1223445555666677888899999888888888888876543 2
Q ss_pred HHHHHHh-----cCCHH---HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 606 SIEEFLQ-----KGEVE---NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 606 l~~~~~~-----~g~~~---~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+.++.. ..+.. +|...+.++..+ -|++.-+ ..|..-...+...- ..-=..++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~d~L----A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLNDAL----AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHHHHH----HHHHHHHH
Confidence 2333322 11222 233333332221 3444321 12222222221110 01123567
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhhhhhhcCCC
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKNGFILRPRV--CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKTKSLLPGP 755 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (767)
+-|.+.|.+-.|..-++.+++.- .-.+.+ ....+...+..-|- .++|...-+-+... .|+.+.|+.-.-+++..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N--~p~s~~~~~~~~~~~~~ 250 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGAN--YPDSQWYKDAYRLLQRG 250 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhc--CCCCcchhhhhhccccc
Confidence 78888888888888888888752 212222 22233333336776 77777765555443 67777666655555555
Q ss_pred C
Q 047305 756 W 756 (767)
Q Consensus 756 ~ 756 (767)
|
T Consensus 251 ~ 251 (254)
T COG4105 251 G 251 (254)
T ss_pred c
Confidence 5
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.045 Score=51.03 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=75.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh
Q 047305 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS 583 (767)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (767)
......|++.+|..+|......... +......++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778888888888888876433 455667778888888888888888888754321222222222334444444444
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+...+ +.-+..+|++..+...++..+...|+.++|.+.+..
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33332 233456677777777777777777777777666666
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.0069 Score=48.16 Aligned_cols=92 Identities=18% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh---HHHHHHHHHh
Q 047305 607 IEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS---CVKLIHGLCK 682 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 682 (767)
+-+....|+.+.|++.|.+ +. ..|..+++|++.+.++.-+|+.++|++-+.++++..-+..... +..-+-.|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 5567789999999999988 44 3589999999999999999999999999999988753444333 4445667889
Q ss_pred cCChhHHHHHHHHHHHCC
Q 047305 683 RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~ 700 (767)
.|+-+.|+.-|+.+.+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 999999999999998765
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.11 E-value=0.001 Score=43.09 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
++..++.+|...|++++|+++|+++++.. |.|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhhh
Confidence 46777888888888888888888888776 777777766653
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.11 E-value=0.0029 Score=62.91 Aligned_cols=61 Identities=11% Similarity=-0.041 Sum_probs=38.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc---hHHHHHHHHhcCCHHHHHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE---SMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+...+..+..+|.+.|++++|+..|+++++.+|++..+ +++++.+|...|+.++|+..+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666666666666666666543 56666666666666666666665
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.07 E-value=0.0096 Score=49.28 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=14.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...++.+|.+.|++++|+..+++.++.+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4445555555555555555555555443
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.03 E-value=0.022 Score=59.67 Aligned_cols=119 Identities=15% Similarity=0.003 Sum_probs=82.6
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hh--hcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MD--FKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~--~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....+.|.++++.+.+..|+...-....+..+...|+.++|++.+.+ +. .....-....+..+++.+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 44667777888888888887776667777777788888888887775 21 1111222334778888888899999999
Q ss_pred HHHHHHHHcCCCCChHhHHH-HHHHHHhcCCh-------hHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVK-LIHGLCKRGYL-------DLAMDVFLYTLK 698 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~ 698 (767)
..|.++.+.+ .-+...|.. .+-++...|+. ++|.+++.++..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999988765 444444433 34456677877 788888887754
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.017 Score=54.25 Aligned_cols=161 Identities=8% Similarity=-0.094 Sum_probs=114.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH----HHHHHHHhcCChh
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK----SLMTWSCRRRKFS 583 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 583 (767)
..|++.+|...++++.+. .+.|...+...-.+|.-.|+.+.-...+++++.. ..++.+.|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467788888888888875 2335666666667788888888888888888754 244443333 3334466889999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CC--CccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN-DF--QLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
+|++.-+++++.+|.+.-+....++++...|++.++.+.+.+-+.... .. -...|-..+-.+...+.|+.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999999999999999999999999999999999877776432211 11 111255566667777999999999988
Q ss_pred H-HHcCCCCCh
Q 047305 661 L-VECKAIVTP 670 (767)
Q Consensus 661 ~-~~~~~~~~~ 670 (767)
- .+.--+.|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 4 333224444
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.048 Score=51.36 Aligned_cols=117 Identities=15% Similarity=0.015 Sum_probs=67.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc---chHHHHHHHhhcCCHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA---PYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 654 (767)
..|+..+|-..++++++..|.+..++.-.-.++.-.|+.+.-...+.++-.+..|+-|. ....++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45666666666666666666666666555556666666655555555543333333322 112233344455666666
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+.-+++.+.+ +.|..+.-.++.++...|+.+++.+..++
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666666665 55555555666666666666666666554
No 231
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.026 Score=50.15 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=67.3
Q ss_pred cCHHHHHHHHHHHHh-----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 96 VVSDVFFVLISGYYK-----VGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVT 170 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 170 (767)
.+..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+ .|....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccHH
Confidence 455667677766654 35666677777888888888888888888876543 211 121111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR 218 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 218 (767)
. .+..- .-.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 109 Q-~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 Q-AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H-HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 11111 123456678888888888888888888888888766553
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.071 Score=49.79 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=84.6
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+..+...........+..-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 55778888888888888888888888888888888888888888777766533211111111122334455555555555
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+-++.. .+ |.|...-..++..|...|+.++|.+.+=.+++++
T Consensus 224 ~l~~~~a-ad-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 DLQRRLA-AD-PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5544443 33 6678888888888888888888888888777664
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.92 E-value=0.0013 Score=42.50 Aligned_cols=42 Identities=14% Similarity=-0.094 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIE 608 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 608 (767)
.++..+...|.+.|++++|+++|+++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888887776653
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.85 E-value=0.042 Score=52.31 Aligned_cols=228 Identities=13% Similarity=0.057 Sum_probs=146.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CChhhHHHHHHHHHh
Q 047305 471 YCTAGLIHKAYKILMQLAESG--NLPDIITYNSLINGFCKVGNINGALKLFKELQLK--GLR---PDSVTYGTLINGLQR 543 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~~~~~~~l~~~~~~ 543 (767)
+..+.+.++|+..+.+...+- ......++..+..+.+..|.+++++..--.-+.. ... .-...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877777665431 0112346677778888889888877542221111 011 112356677777777
Q ss_pred cCCHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc------cchHHHHHHHHhc
Q 047305 544 VDREEDAFRIFGQMPQN-GCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD------DESMKSIEEFLQK 613 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~ 613 (767)
..++.+++.+-+.-... |..| .......+..++...+.++++.+.|+.+++....+. .++..++..+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 77777777776665542 2222 123334466667778899999999999986433332 3567889999999
Q ss_pred CCHHHHHHHHHHh---hhcCC--CC----CccchHHHHHHHhhcCCHHHHHHHHHHHHH----cCCCC-ChHhHHHHHHH
Q 047305 614 GEVENAIQGLLEM---DFKLN--DF----QLAPYTIWLIGLCQDGQVKEALNIFSVLVE----CKAIV-TPPSCVKLIHG 679 (767)
Q Consensus 614 g~~~~A~~~~~~~---~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~ 679 (767)
.++++|+-...+. ..... .. ...++..|+-+|...|+..+|.+.-+++.+ .|-.+ -.-+...++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999885444441 11111 11 123466788889999999999999988743 33111 23356679999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 047305 680 LCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~ 698 (767)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999998865
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.85 E-value=0.052 Score=47.79 Aligned_cols=92 Identities=17% Similarity=0.092 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
-..|-..-|.--|.+.... .|+. .+||.+.-.+...|+++.|.+.|+...+.+..-+-...+.-+.. .--|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhh
Confidence 3344444444444444433 3442 34555555555666666666666666554322222222222222 234566666
Q ss_pred HHHHHHHHhccCCCcc
Q 047305 586 FSLWLQYLRDISGRDD 601 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~ 601 (767)
.+-+.+..+.+|.+|-
T Consensus 153 q~d~~~fYQ~D~~DPf 168 (297)
T COG4785 153 QDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHhcCCCChH
Confidence 6555555555555554
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.05 Score=53.99 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=105.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--------CccchHHHHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF--------QLAPYTIWLI 643 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~--------~~~~~~~l~~ 643 (767)
-+..|.+..+...+..-.+.+.....+.+.........+...|++.+|++.+........|. ....|++||-
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 34445555566666555555555555666677777888899999999999998854433343 3345799999
Q ss_pred HHhhcCCHHHHHHHHHHHHH-------cCCCCC----------hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 644 GLCQDGQVKEALNIFSVLVE-------CKAIVT----------PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
++++.|.|.-+..+|.+++. .|++|. -.+.+..|-.|...|+.-.|.+.|.++.+. +.-+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcH
Confidence 99999999999999999874 343442 344566777899999999999999999864 677888
Q ss_pred HHHHHHHHHh
Q 047305 707 VCNYLLRSLL 716 (767)
Q Consensus 707 ~~~~l~~~l~ 716 (767)
.|.-+..+-.
T Consensus 371 lWLRlAEcCi 380 (696)
T KOG2471|consen 371 LWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHH
Confidence 8887766544
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.84 E-value=0.6 Score=46.45 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHH--HHHh
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLI----NGFC---KVGNINGALKLFKELQLKGLRPDSV----TYGTLIN--GLQR 543 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~ 543 (767)
-++|+++++.+.+-.. -|...-|.+. .+|. .......-+.+-+-+.+.|+.|-.. .-|.|.+ .+..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 5667777776655321 1333222221 1111 1122333333333444456554332 2233332 2345
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.+ .|++...+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~----LP~n~~~~ 528 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK----LPPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh----CCCchhhH
Confidence 6777776655555554 567777777777777777777777776533 35555444
No 238
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.033 Score=48.24 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=63.9
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+.+.|++++|..-|..++...|.-+.-.. ...|.+.+.++.+.+.++.|+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~r------------------------------sIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEER------------------------------SILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHH------------------------------HHHHhhhHHHHHHhhhHHHHH
Confidence 45678888888888777777665443110 122666666777777777777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.-..++++.+ |....++..-+.+|.+..++++|+.-|+++++..
T Consensus 155 ~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 155 EDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777776 5555566666777777777888888777777643
No 239
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.82 E-value=0.03 Score=49.74 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLR 252 (767)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (767)
-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3556777777777777777777777777775544
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.77 E-value=0.0011 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|+++++.+|+++.+++.++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666667777777777777777777766663
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.28 Score=50.68 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
.+...+..-+.+...+.-|.++|..|-+. ..++......+++++|..+.++..+ +.|+ +|......+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHh
Confidence 34444444444555566677777666321 2345556677888888888777654 2333 344455566
Q ss_pred HhcCChhHHHHHH
Q 047305 577 CRRRKFSLAFSLW 589 (767)
Q Consensus 577 ~~~g~~~~A~~~~ 589 (767)
+...++++|.+.|
T Consensus 815 AE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 815 AENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhHHHHHHHH
Confidence 6666666666554
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.091 Score=47.28 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
..++.+...+.... +.||. ..|.....+|...+++++|...+.+..+
T Consensus 9 i~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 9 ISEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34444444433322 45554 3455556777888888888887777764
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.034 Score=48.25 Aligned_cols=110 Identities=9% Similarity=-0.033 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCCCccch---HHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCc----cchHHHHHHHhhcCCHHHHHHH
Q 047305 586 FSLWLQYLRDISGRDDES---MKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQL----APYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
....+++...+|....+. ..++..+...|++++|...+.. +.. |.+. .+-..|+.+....|.+|+|+.+
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333344444443333222 2456777788888888887776 322 2222 2345788889999999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
++...+.+ -.+.....-|+++...|+.++|+.-|+++++.+
T Consensus 149 L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 LDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred Hhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99987554 233446678999999999999999999999875
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.71 E-value=0.053 Score=51.65 Aligned_cols=226 Identities=14% Similarity=0.060 Sum_probs=139.4
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC---CHhhHHHHHHHHHhc
Q 047305 507 CKVGNINGALKLFKELQLK--GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTP---SPAVYKSLMTWSCRR 579 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~ 579 (767)
....+.++|+..|.+...+ +..-...++..+..+.++.|.+++++.+--.-+.. .... --+.|..+.+.+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777776653 11112345667778888899888876543322211 1111 134555666667777
Q ss_pred CChhHHHHHHHHHHhccCCC-----ccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC----ccchHHHHHHHhhcC
Q 047305 580 RKFSLAFSLWLQYLRDISGR-----DDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ----LAPYTIWLIGLCQDG 649 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~----~~~~~~l~~~~~~~g 649 (767)
.++.+++.+-.-.+..-... ..+...++.++.-.+.++++++.|+. +......++ ..++..|+..|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 77777777655555321111 13445678888888999999999888 332222222 346899999999999
Q ss_pred CHHHHHHHHHHHHH----cCCCCC-----hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH---HHHHHHh
Q 047305 650 QVKEALNIFSVLVE----CKAIVT-----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL-RPRVCN---YLLRSLL 716 (767)
Q Consensus 650 ~~~~A~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---~l~~~l~ 716 (767)
++++|+-+..++.+ .+++.- .-+..+++-++...|.+-+|.++-+++.+..+.. |..+.. --++-.+
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999999998854 222221 2245567778889999999999988876532222 222211 1223333
Q ss_pred hcCCccHHHHHHHHHHH
Q 047305 717 FSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 717 ~~~~~~~~~a~~~~~~~ 733 (767)
+..|+ .+.|..-++..
T Consensus 257 R~~gd-~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGD-LERAFRRYEQA 272 (518)
T ss_pred Hhccc-HhHHHHHHHHH
Confidence 36776 67776666653
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.34 Score=48.10 Aligned_cols=173 Identities=13% Similarity=0.028 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT---AGLIHKAYKILMQLAE 489 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 489 (767)
..+...++-+|....+|+..+++.+.+..-.. ........+-...+-++.+ .|+.++|.+++..+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~----------~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPT----------CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc----------cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 33444556678888888888888888852111 1122334445556666667 8999999999999766
Q ss_pred cCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH----HHHHHH--
Q 047305 490 SGNLPDIITYNSLINGFCK---------VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREE----DAFRIF-- 554 (767)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----~A~~~~-- 554 (767)
....++..+|..+++.|.. ....++|+..|.+.-+. .|+..+-..++..+...|... +..++-
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 6667788888877776642 12356677777766544 355443333333333344322 122222
Q ss_pred --HHhhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 555 --GQMPQNG---CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 555 --~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
..+.+.| -..+-..+..++.+..-.|++++|.+.++++.+..|
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 1111222 123344555566666666777777777777766543
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.68 E-value=0.058 Score=44.77 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 542 QRVDREEDAFRIFGQMPQNG--CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
.+.|++++|.+.|+.+...- -+-....-..++.+|.+.|++++|...+++.++.+|..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34455555555555554321 0112233334444455555555555555555555554444
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.62 E-value=0.55 Score=48.66 Aligned_cols=81 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
.....+.-+.+...+.-|.+++.++.. .-.+.......++|++|..+-++.-+. -+.+|.-.++-+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHHhh
Confidence 333333334444455555555555431 334555666677777777766655332 1234444444444
Q ss_pred hcCChhHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLY 695 (767)
Q Consensus 682 ~~g~~~~A~~~~~~ 695 (767)
...++++|.+.|.+
T Consensus 816 E~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhHHHHHHHHHH
Confidence 44444444444433
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.22 Score=44.61 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=92.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCH-hhHHHHHHHHHhcC
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ----NGCTPSP-AVYKSLMTWSCRRR 580 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g 580 (767)
+.-.+++++|.+++.+... .|.-..+++.|-..|-++.+ .|-+.|. .+|.....+| +.+
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3445578888888776542 23333344444443333322 2323332 3444444444 566
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-CCHHHHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-GQVKEALNIFS 659 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 659 (767)
++++|...+++++ ..|...|++..|.+. +..++.+|-.. .++++|+..|+
T Consensus 88 ~~~eAv~cL~~ai--------------eIyt~~Grf~~aAk~---------------~~~iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 88 DPEEAVNCLEKAI--------------EIYTDMGRFTMAAKH---------------HIEIAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred ChHHHHHHHHHHH--------------HHHHhhhHHHHHHhh---------------hhhHHHHHhhhHHHHHHHHHHHH
Confidence 8888888877764 667788888777433 44556666655 78888888888
Q ss_pred HHHHcC-----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 660 VLVECK-----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 660 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+-+.- ......++...++.-...|++.+|+.+|++..+..
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 12223455566666678899999999999998765
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.50 E-value=0.69 Score=42.70 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 422 GLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
.-.+.|++++|.+.|+.+.... ...+....+...++-++.+.++++.|+...++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-----------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-----------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-----------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455677777777777775211 111222344445555555666666666666555544
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=1.7 Score=47.02 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=95.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 65 SNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGY----YKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 65 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
....-+.++.+...+..|..+-..- ..++.+...+++.| .+.|++++|...|-+-... +.|. .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3344556666666666665554322 23444444444443 4567888887777654421 1222 234
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHh
Q 047305 141 NIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220 (767)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 220 (767)
.-+....+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 444455555666666777777764 444555667778888887777666555443 2211 112344556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF 264 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (767)
+|.-+-.+... +......++ -..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66655444432 223333333 3456777777777654
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.42 E-value=1.5 Score=45.64 Aligned_cols=186 Identities=10% Similarity=-0.013 Sum_probs=118.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+..+|...+.--...|+.+.+.-+|+...--- .-=...|...+.-....|+.+-|...+....+.-.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44667777777778888888888888765210 00122344555555556888888877777766433333333222233
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH---HHHHHhhhcCCCCCccc----hHHHHHH-Hh
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI---QGLLEMDFKLNDFQLAP----YTIWLIG-LC 646 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~p~~~~~----~~~l~~~-~~ 646 (767)
.....|+++.|..+++.+.+..|....+...-+....+.|+.+.+. +.+..... ...+... +...++. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~--~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE--GKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--cccCcchhHHHHHHHHHHHHH
Confidence 3445679999999999988877777777777788888888888875 23222211 1222222 2223332 22
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
-.++.+.|..++.++.+.. +++...+..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 3478899999999998875 788778888877766555
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.42 E-value=0.0032 Score=37.76 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=18.8
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
|+++++.+ |.++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 555666666666666666666554
No 253
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.37 E-value=1.2 Score=44.32 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=150.6
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCC----Chhh-HHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH--H
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLR----SFAS-NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG--Y 108 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~----~~~~-~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~--~ 108 (767)
-+|..+++...|-.+|.-+-...... .-++ -+.+++.+. ..+.+.+...+.+..+.. + ...|..+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-G--KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHH
Confidence 35566777777777776553332211 1122 233444333 345566666666665543 1 2223333332 3
Q ss_pred HhcCChhHHHHHHHHhhhC--CCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHH
Q 047305 109 YKVGDCEKALESFGKMKEF--DCQPD------------VYIYNAVLNIAFRKQLFLLALAVYYEMVKLNC----LPNIVT 170 (767)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~--~~~~~------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~ 170 (767)
.+.+.+.+|++.+..-... +..+. ..--+..+.++...|++.+++.+++++...=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3567777777777655432 11111 11123344555566666666666655554322 255666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQR---GILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNG 247 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (767)
|+.++-.+++. .|-++.+. ++-| . |--++-.|.+. ...++.-.-..+-|.......++..
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~p--d-yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYP--D-YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccCh--H-HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHH
Confidence 66554444322 22222111 1111 1 11111111110 0000000000122333333333333
Q ss_pred HHh--cCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHh
Q 047305 248 FCK--LRRVDEALALLRSFEKDGFVPRLG-SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE----PDVVLYGVMIRGLSE 320 (767)
Q Consensus 248 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 320 (767)
..- ..+..--+++++.....-+.|+-. +...++..+.. +.+++..+.+.+....+. .-..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 321 112222333333333333344422 22333333333 455555555554433211 123467778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---H
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCY-------NALIKGFCD----LGLLDQARSLQVEIWKRDSLPNTHTFTILI---C 386 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~ 386 (767)
.++...|-+.+.-+.... |+...- ..+....+. .-+...-..+|+.+...++. .......|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 888888888887766543 222111 111111221 11233334455555554431 112222222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHHc
Q 047305 387 GMCRNGM-VDDAQKLFNKMEKA 407 (767)
Q Consensus 387 ~~~~~g~-~~~A~~~~~~~~~~ 407 (767)
-+-+.|. -++|+.+++.+.+.
T Consensus 388 ~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHh
Confidence 2334454 78888888888764
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.48 Score=42.91 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
.|.....+|...+++++|...+.+..+. ...+...|. ..+.++.|.-+.+++... .--...|......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444566777788888888887777532 121222221 123345555555555443 111223455556677
Q ss_pred hcCCHHHHHHHHHHhhhC--CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 543 RVDREEDAFRIFGQMPQN--GCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
..|..+.|-..++++-+. +..|+ ...|..-+.+....++...|.+++. ..+.++.+..++++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g--------------k~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG--------------KCSRVLVRLEKFTE 168 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH--------------HhhhHhhhhHHhhH
Confidence 777777666666655331 22332 1233333333333333333433332 23566677777777
Q ss_pred HHHHHHHh---hhc--CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH---HcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 619 AIQGLLEM---DFK--LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV---ECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 619 A~~~~~~~---~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
|...+.+. ..+ .-|.-...+...+-+|....+|..|...++.-- ...-+.+..+...|..+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 75555552 111 112222336666667777789999999888843 222233344444455443 556666666
Q ss_pred HHHH
Q 047305 691 DVFL 694 (767)
Q Consensus 691 ~~~~ 694 (767)
.++.
T Consensus 248 kvl~ 251 (308)
T KOG1585|consen 248 KVLS 251 (308)
T ss_pred HHHc
Confidence 6554
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.27 E-value=0.16 Score=53.23 Aligned_cols=120 Identities=18% Similarity=0.058 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC--C-CCChHhHHHHHHHHHhcCChhHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK--A-IVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
..+.+.|.+.+..+... .|++.-.+..-++.+...|+.++|++.|+++.... . .-..-++..+++++....+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 45667787777775433 58888878888889999999999999999876311 1 22345678899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccH-------HHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKK-------VHAYHLLCRMKS 735 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~a~~~~~~~~~ 735 (767)
...|.++.+.+ .=...++.|+.++.+...|+ . ++|.+++++.+.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHH
Confidence 99999998753 22456677777776656676 5 889999998773
No 256
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.23 E-value=1.4 Score=43.41 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=58.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
+.+..|.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++..++-.. . -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 33444555556666666665554443 34666666666666666666665554321 1 13345556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
+.|...+|..+...+ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666666554441 1 133455566666666665543
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.20 E-value=0.28 Score=49.46 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=50.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC--ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR--DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
+-..+-..+..++.+.|+.++|++.+.++++.+|.. -.+..+++.++...+.+.++...+.+-+...-|.++...
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 334444566777778888888888888888777653 335567888888888888887777665433335555433
No 258
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.17 E-value=0.022 Score=48.87 Aligned_cols=32 Identities=13% Similarity=-0.134 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 582 FSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
++.|++.++.....+|.+.+.++..+.++.+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 46677777777788888888877766665543
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.92 E-value=0.68 Score=37.45 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
.....++..+|+-+.-.+++..+.+.+ .++|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334445667777777777777776544 778888888888888888888888888888877743
No 260
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.90 E-value=0.062 Score=53.16 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=66.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|+.-.|.+-...+++..|.+|......+......|+++.+...+...+......+.. ...+.+.....|++++|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~-~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST-LRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH-HHHHHHhhhchhhHHHHHHH
Confidence 45666666655566666666666666555666666666666655555543322222222 55555666666666666666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
-..|+... -.++.+...-+-.--..|-++++..+|++....
T Consensus 380 a~~~l~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccc-cCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66665443 334444333333344455666666666666543
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.80 E-value=0.052 Score=51.23 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=79.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
-+.-|.++|++++|+..|.+.+...|.++..+.+.+.+|.+...+..|...-... ...+....-+|...+.+-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4556888999999999999999999999999999999999988888775444431 112233445677777777777888
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+|.+-++.+++.. |.+ ..|-..+.+.....++.
T Consensus 182 ~EAKkD~E~vL~LE-P~~----~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALE-PKN----IELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhC-ccc----HHHHHHHHHhcchHhhh
Confidence 88888888888764 332 23444555555444443
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.70 E-value=0.11 Score=44.90 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 138 AVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 138 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
.++..+...|+++.|...+..+.... |.+...|..+|.+|...|+...|.+.|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555555443 334445555555555555555555555443
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.70 E-value=3.2 Score=43.27 Aligned_cols=224 Identities=12% Similarity=0.008 Sum_probs=143.4
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 047305 509 VGNINGALKLFKELQLK---GLRPD----SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK 581 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (767)
.....+....++.-+.. .++|. ..+|...+..-...|+.+.+.-+|+++.-- +..=...|-..+......|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 33444455555555543 22332 356777788888999999999999998631 22335566677777777899
Q ss_pred hhHHHHHHHHHHhccCCCccch-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH---HH
Q 047305 582 FSLAFSLWLQYLRDISGRDDES-MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL---NI 657 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~ 657 (767)
.+-|..++....+......... ..-+..--..|++..|...++.+.... |....+-..-+....+.|+.+.+- ++
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 9999998888877654444444 344444556889999999999987776 777666666667778889999888 55
Q ss_pred HHHHHHcCCCCChHh----HHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC-CccHHHHHHHH
Q 047305 658 FSVLVECKAIVTPPS----CVKLIHG-LCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSK-DNKKVHAYHLL 730 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~----~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~-~~~~~~a~~~~ 730 (767)
+....+- ..+..+ +..+++. +.-.++.+.|..++.++... -|+ -..+..++.....+. +...+-...++
T Consensus 426 ~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 426 YSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 5554432 233333 2333333 44578899999999999764 344 444555666555333 22234444455
Q ss_pred HHHHHcCC
Q 047305 731 CRMKSVGY 738 (767)
Q Consensus 731 ~~~~~~~~ 738 (767)
..+.....
T Consensus 502 ~~~~~~~~ 509 (577)
T KOG1258|consen 502 WKELKMLI 509 (577)
T ss_pred HHHHhhhc
Confidence 55444333
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.53 Score=40.13 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSI 607 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~ 607 (767)
.|...+. +...++.++|+.-|..+.+.|...-+. ..........+.|+-..|...|+++-+..|..... ....+
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 344556666777776666554332221 11122333456666677777766665443332222 22335
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
..+...|-++.....++-+....+|-...+-..|+-+-.+.|++.+|..+|+.+.+
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55666777776666666665544555555566666666777777777777777654
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=4.5 Score=43.96 Aligned_cols=140 Identities=17% Similarity=0.262 Sum_probs=66.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLD 360 (767)
Q Consensus 281 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (767)
.-+.+.|++++|...|-+-+.. ++| ..++.-|.......+...+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3344556666665555443321 111 12334444555555555666666666554 4444455666666666666
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 361 QARSLQVEIWKRDS-LPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 361 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
+..+..+..- .|. ..| ....+..+.+.+-.++|..+-.+... +......+ +-..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 5554443322 111 011 22334444455555555554444332 22222222 33446666776666655
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=1.3 Score=37.81 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=99.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch--HHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCc--cchH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES--MKSIEEFLQKGEVENAIQGLLEMDFK-LNDFQL--APYT 639 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~p~~~--~~~~ 639 (767)
....|...++ +.+.++.++|...|..+-+..-..-.++ ...+....+.|+...|+..|.++... ..|.-. .+-.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555555 4577889999999999887655554444 45678888999999999999996432 122211 1233
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
.-++.+...|.|++...-.+.+..-+.+-.......|+-+-.+.|++.+|...|+.+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 4455677889999999888887654445566677889999999999999999999887654333
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.53 E-value=1.4 Score=39.24 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.+|+.+.--+...|+++.|.+.|+..++.+|...-+..+.+-.+.--|++.-|.+.+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 345555555555556666666666666666665555555555555555555555555555
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.53 E-value=3.8 Score=46.34 Aligned_cols=24 Identities=4% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHH
Q 047305 382 TILICGMCRNG--MVDDAQKLFNKME 405 (767)
Q Consensus 382 ~~l~~~~~~~g--~~~~A~~~~~~~~ 405 (767)
..++..|.+.+ ..+.|+....+..
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455555555 4445554444444
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.50 E-value=2.6 Score=40.92 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=90.5
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCH------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCh---
Q 047305 472 CTAGLIHKAYKILMQLAESG--NLPDI------ITYNSLINGFCKVG-NINGALKLFKELQLK--------GLRPDS--- 531 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~p~~--- 531 (767)
.+.|+.+.|..++.++.... ..|+. ..|+.-.. ....+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788999999998876543 12222 12333333 33555 888888887776543 122332
Q ss_pred --hhHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 532 --VTYGTLINGLQRVDREE---DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 532 --~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-++++.+.++.+++.+.+.+|+...+.....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 35667777887776654 466666666443 233455665666777778889999999999998766444444433
Q ss_pred HHHHHh--cCCHHHHHHHHHH
Q 047305 607 IEEFLQ--KGEVENAIQGLLE 625 (767)
Q Consensus 607 ~~~~~~--~g~~~~A~~~~~~ 625 (767)
...+.. ......|...+..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~ 182 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDY 182 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHH
Confidence 333321 2223344455555
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.48 E-value=0.048 Score=51.46 Aligned_cols=150 Identities=9% Similarity=-0.056 Sum_probs=95.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
-.+.|.+.|++++|+..|...+.. .| ++.++..-..+|.+.+++..|..-...++..+.....+|...+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356788899999999999888764 44 777777777888999999999988888888777667777777777777888
Q ss_pred HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-hHh-----HHHHHHHHHhcCChhH
Q 047305 616 VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-PPS-----CVKLIHGLCKRGYLDL 688 (767)
Q Consensus 616 ~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-----~~~l~~~~~~~g~~~~ 688 (767)
..+|-+..+. +. ..|.+.. |-..|.......++.-+. +... |..|- -.. .-.-|..+.+.|+++.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~E----LkK~~a~i~Sl~E~~I~~-KsT~-G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNIE----LKKSLARINSLRERKIAT-KSTP-GFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHh--hCcccHH----HHHHHHHhcchHhhhHHh-hcCC-CCCccccchhhhccccCcchhhhhhhcccc
Confidence 8888777666 33 3466443 334444444443332221 1110 11110 001 1112445667777777
Q ss_pred HHHHHHHH
Q 047305 689 AMDVFLYT 696 (767)
Q Consensus 689 A~~~~~~~ 696 (767)
++..+-+-
T Consensus 253 ~i~~~~~~ 260 (536)
T KOG4648|consen 253 PVVDVVSP 260 (536)
T ss_pred ceeEeecc
Confidence 77666544
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.66 Score=40.62 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK--SLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSI 607 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 607 (767)
.|..++.+.. .+.. +.....+++...+....-.++. .+...+..+|++++|...++..+..-.+.. .+-..++
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444443 2333 4445555555432121111222 234457788999999998888774422221 2334678
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.+..+.|++++|+..+.....+ ...+......|.++...|+-++|..-|+++++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 9999999999998888775422 2334446678999999999999999999999875
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.26 E-value=1.8 Score=44.07 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=90.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 508 KVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
+..+++.-+++-.++.+. .|+- ..|..|. --.+....+|.+++++.++.|- ..+..-- .....|..-+
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~~~e-- 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGHFWE-- 248 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccchhh--
Confidence 555666666666666654 4443 2333332 2234557889999988876431 0110000 0001111111
Q ss_pred HHHHHHHhccCCCccch--HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDES--MKSIEEFLQKGEVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.....+.++..+ ..++.+..+.|+.++|++.+.++-....+ ++..+..+|+.++...+.+.++..++.+-.+
T Consensus 249 -----~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 249 -----AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred -----hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111112223233 46788899999999999999996433223 3555788999999999999999999999876
Q ss_pred cCCCCChHhHH
Q 047305 664 CKAIVTPPSCV 674 (767)
Q Consensus 664 ~~~~~~~~~~~ 674 (767)
...|++....+
T Consensus 324 i~lpkSAti~Y 334 (539)
T PF04184_consen 324 ISLPKSATICY 334 (539)
T ss_pred ccCCchHHHHH
Confidence 66566555433
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.16 Score=44.20 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+-+.+.|++++|..-|..+++. +++. ...|..-..++.+.++++.|+.-..++++.+|.+..++...+.+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3456678888888888887764 2332 334444455677888888888888888888888877777777777777
Q ss_pred CCHHHHHHHHHHhh
Q 047305 614 GEVENAIQGLLEMD 627 (767)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (767)
.++++|++.+.++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777777743
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.14 E-value=3.5 Score=40.12 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=101.7
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChh------hHHHHHHHHHhcC-CHHHHHHHHHHhhhC--------CCCCC----
Q 047305 507 CKVGNINGALKLFKELQLKG--LRPDSV------TYGTLINGLQRVD-REEDAFRIFGQMPQN--------GCTPS---- 565 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~--~~p~~~------~~~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~---- 565 (767)
.+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999887642 233322 2333233 34455 888887777776442 11222
Q ss_pred -HhhHHHHHHHHHhcCCh---hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHH
Q 047305 566 -PAVYKSLMTWSCRRRKF---SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIW 641 (767)
Q Consensus 566 -~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l 641 (767)
..++..++.+|...+.. ++|..+.+.+....|+.+..+.....+..+.++.+++.+.+.++-.... .....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 34566777777776654 4566666677778888888887777777778899999888888644322 122335555
Q ss_pred HHHHh--hcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 642 LIGLC--QDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 642 ~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
+..+. .......|...++.++-..+.+...
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55552 2244567777777775443455443
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.07 E-value=4.2 Score=40.70 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=51.9
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 95 SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
|.+...|..|+.-|..+|.+++..+++++|.. .++--..+|..-++.-....++.....+|.+-+... .+...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 55667777888888888888888888877764 233444566666666666677777777776666543 334455544
Q ss_pred HHHH
Q 047305 175 INGL 178 (767)
Q Consensus 175 ~~~~ 178 (767)
+.--
T Consensus 116 l~YI 119 (660)
T COG5107 116 LEYI 119 (660)
T ss_pred HHHH
Confidence 4433
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.06 E-value=0.04 Score=33.60 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=15.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666643
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.01 E-value=0.036 Score=33.22 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=13.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
|..++.+|...|++++|++.|+++++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
No 278
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.25 Score=44.51 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
....+++.|+..|.+.+. +.|+.. .|..=+.++.+.++++.+..-..++++..|+.....+.++........+++|+
T Consensus 21 f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 333444555554444443 233332 22233334444555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 047305 621 QGLLE 625 (767)
Q Consensus 621 ~~~~~ 625 (767)
..+.+
T Consensus 99 ~~Lqr 103 (284)
T KOG4642|consen 99 KVLQR 103 (284)
T ss_pred HHHHH
Confidence 55544
No 279
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=6.5 Score=42.22 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047305 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGM 388 (767)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (767)
-+.+--+.-+...|+-.+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... ++.-|..+...|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344445555666777777777666543 3466777777777777777777665433321 134566777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
.+.|+.++|.+++.+.... . ....+|.+.|++.+|.++--+
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888877654321 1 456677778888887776544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.92 E-value=0.14 Score=48.38 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 047305 64 ASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMK 125 (767)
Q Consensus 64 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 125 (767)
.++..++..+...++++.+...++++.... |-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444445555555555555554443 3444455555555555555555555554443
No 281
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.82 E-value=0.58 Score=38.58 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 047305 373 DSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA-GCFPSVGMFNALIDGLC 424 (767)
Q Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 424 (767)
...|+..+..+++.+|+..|++..|+++++.+.+. +++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34588899999999999999999999999988664 56666788888886543
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.71 E-value=0.08 Score=31.63 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR 599 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 599 (767)
..+..+..++.+.|++++|++.|+++++..|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566777777888888888888887777754
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=3.3 Score=37.56 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHH---H
Q 047305 508 KVGNINGALKLFKELQLK----G-LRPDSVTYGTLINGLQRV-DREEDAFRIFGQMPQN--GCTPSPAVYKSLMTW---S 576 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~---~ 576 (767)
+.+++++|...++..++. | +..-......+...|-.. .++++|+..|++.-+. |-..+...-.+++.+ -
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 334666666655544431 1 000111222344444332 5667777777776552 223333333344333 4
Q ss_pred HhcCChhHHHHHHHHHHhccCCCcc
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
...+++.+|+.+|+++.+..-+++.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchH
Confidence 5667888888888887765444443
No 284
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.66 E-value=2.2 Score=36.35 Aligned_cols=82 Identities=18% Similarity=0.039 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047305 350 IKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGEL 429 (767)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (767)
+..+...+........++.+...+. .+...++.++..|++.+ ..+....++. . .+.......+..|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcCcH
Confidence 3333334444555555555444432 34444555555554432 2222233221 1 1222223344555555555
Q ss_pred HHHHHHHHHh
Q 047305 430 EKANLLFYKM 439 (767)
Q Consensus 430 ~~A~~~~~~~ 439 (767)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555544
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.59 E-value=0.072 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
No 286
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.47 E-value=0.64 Score=38.37 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 238 FVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRG 317 (767)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (767)
..++..++.++++.|+.+....+++..= |+..+... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4566667777777777777766665442 22211100 0000 11123456888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 047305 318 LSEAGKVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 355 (767)
|+.+|++..|+++++...+. +++.+..+|..|++....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88888888888888887665 666677888888776543
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.46 E-value=0.094 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=13.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
|..+|.+|...|++++|+..|+++++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.43 E-value=6.5 Score=39.96 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP---DIITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
....+..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455566666677777777777776665532111 122223334445566666677766666665
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.36 E-value=0.078 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.+|..++.+|...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777778888888888777777765
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=3 Score=35.46 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 047305 69 VISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL 148 (767)
Q Consensus 69 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 148 (767)
++..+...+.......+++.+...+ +.++...+.++..|++.+ ..+.++.++. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3333333444444444444444443 234444444555554432 2233333331 0112223334455555555
Q ss_pred HHHHHHHHHHH
Q 047305 149 FLLALAVYYEM 159 (767)
Q Consensus 149 ~~~A~~~~~~~ 159 (767)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 291
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.21 E-value=3.2 Score=43.06 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.+.|..+.|+++... +.+ -.+...++|+++.|.++. ...+++..|..++.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHc
Confidence 55555666666666666655422 111 123334566666666542 2223445566666666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|+.+-|.+.+.+... +..|...|.-.|+.+.-.++.+.+...| . ++.-..++...|+.++..+++
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655421 6667777777777766666666666554 2 233444556667777777766
Q ss_pred HH
Q 047305 694 LY 695 (767)
Q Consensus 694 ~~ 695 (767)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.10 E-value=1.4 Score=45.67 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
....+.++.-+.+.|.++.|+.+..+-. .-.+...+.|+++.|.++.++.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------------------~rFeLAl~lg~L~~A~~~a~~~----- 344 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------------------HRFELALQLGNLDIALEIAKEL----- 344 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------------------HHHHHHHHCT-HHHHHHHCCCC-----
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------------------HHhHHHHhcCCHHHHHHHHHhc-----
Confidence 3345556666666666666665543321 2234455566666665554332
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 493 LPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.+...|..|......+|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 345 -~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 345 -DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 2455666666666666766666666655421 334444455556655555555554443
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.02 E-value=3.9 Score=44.28 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHhcC-----CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCCh
Q 047305 599 RDDESMKSIEEFLQKG-----EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.+.+...++.+|.+.. +.+.|...+.+..... ++.....++..+.... +...|.++|..+.+.|. .
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~ 360 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---I 360 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---h
Confidence 3445555555555532 4455655555533222 2223445555555443 45667777777666552 2
Q ss_pred HhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 671 PSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 671 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
.+...++.+|.. .-+.+.|..+++++.++|
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 233344444432 235666666666666655
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.01 E-value=2.8 Score=34.12 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
+..+..+|.-+.-.+++..+.+. ..+++.....+..+|.+.|+..++-+++.++.+.|+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555554432 234444555555566666666666666655555553
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.62 E-value=16 Score=41.68 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047305 235 SPDFVAYNALLNGFCKLR--RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYG 312 (767)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (767)
.|+ .....+|..|.+.+ .++.++....+...... ...+-.+ +..++- +-.+..+|+..+.. -|.. -
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~a-l~hll~---Lvdvn~lfn~ALgt---YDl~--L 855 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEA-LKHLLF---LVDVNELFNSALGT---YDLD--L 855 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHH-HHHHHh---hccHHHHHHhhhcc---cchH--H
Confidence 445 44556777777766 56666666666554111 1111111 111111 11222333332211 0111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
+++-+-..+.++.+-+-+++++... +++..-| .|..| .++++.|..-+..+- ...|.-.++.-.+.|
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG-------ETYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcc
Confidence 2223334456777777777776642 1111111 12222 356666665554442 123334444455677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVG----MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV 468 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (767)
.+.+|+.++. |+.. .|.+....+...+.+++|.-.|+..- -....+
T Consensus 923 Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G----------------------klekAl 972 (1265)
T KOG1920|consen 923 LYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCG----------------------KLEKAL 972 (1265)
T ss_pred cchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc----------------------cHHHHH
Confidence 7777776653 3444 34444455566777888877776652 123446
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047305 469 EQYCTAGLIHKAYKILMQLAESGNLPDII--TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 546 (767)
.+|..+|++.+|..+..++... .+.. +-..|+.-+...+++-+|-++..+.... ....+..|++...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 6777788888888888776432 1222 2245667777788888888777776532 1223445566667
Q ss_pred HHHHHHHHHHhh
Q 047305 547 EEDAFRIFGQMP 558 (767)
Q Consensus 547 ~~~A~~~~~~~~ 558 (767)
+++|+++.....
T Consensus 1042 ~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1042 WEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhcc
Confidence 777777665544
No 296
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.57 E-value=0.26 Score=49.46 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..+.+.+.++.|+.+|.++++..|+....+...+.++.+.+++..|+..+.+.- +.+|.....|..-+.++.+.+++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai-e~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI-ELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh-hcCchhhheeeeccHHHHhHHHHH
Confidence 4445577888999999999999999888888888888888888888888887732 234777777888888888889999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
+|+..|++..... |.++.....
T Consensus 90 ~A~~~l~~~~~l~-Pnd~~~~r~ 111 (476)
T KOG0376|consen 90 KALLDLEKVKKLA-PNDPDATRK 111 (476)
T ss_pred HHHHHHHHhhhcC-cCcHHHHHH
Confidence 9999998887764 555544433
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.40 E-value=2.5 Score=36.17 Aligned_cols=76 Identities=18% Similarity=-0.017 Sum_probs=43.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
..-.+.++.+++...+..+.. ..|..+..-..-++.+...|+|.+|+.+++.+.+.. +..+.+--.++.++...|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV-LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA-PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHcCC
Confidence 333445555555444444321 236666656666666777777777777777765554 4455555555656655554
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.35 E-value=13 Score=40.33 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 474 AGLIHKAYKILMQLAE-------SGNLPDIITYNSLINGFCKVG-----NINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
..+.+.|...|+.+.+ .+ .......+..+|.+.. +.+.|..++......| .|+...+...+.-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 3456666666665544 32 2223444555554432 4455666666665554 22333222221111
Q ss_pred Hh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHhcc
Q 047305 542 QR-VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC----RRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 542 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~ 596 (767)
.. ..+...|.++|..+.+.|. ...+..+..+|. -..+.+.|..++.++.+.+
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 11 1234566666666665542 222222333221 1125566666666666554
No 299
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=14 Score=39.88 Aligned_cols=101 Identities=10% Similarity=-0.048 Sum_probs=62.6
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
-+...|+..+|.++-.+.. -++-..++..+.++...+++++-.+...+.. +|..|.=...+|.+.|+.+||
T Consensus 693 ~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHH
Confidence 3456677777766543321 2334455556677777777766533322222 134477777888888888888
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.+++-+.-. .+ ..+.+|.+.|++.+|.+.-
T Consensus 764 ~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 764 KKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 888877632 22 3556788888888887753
No 300
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.08 E-value=9.4 Score=37.55 Aligned_cols=150 Identities=10% Similarity=-0.040 Sum_probs=78.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ----RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR---- 578 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 578 (767)
...+++..+...+......+ +......+...|. ...+..+|..++..+.+.|. ......+..+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 35667888888888877643 2233333333333 33457778888887766552 2333335555443
Q ss_pred cCChhHHHHHHHHHHhccCCC-ccchHHHHHHHHhcC-------CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc--
Q 047305 579 RRKFSLAFSLWLQYLRDISGR-DDESMKSIEEFLQKG-------EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-- 648 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 648 (767)
..+..+|...|+++.+..-.. ..+...++..|..-+ +...|...+.+..... ++.....++..|...
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 337778888887777654333 222444444444321 1113444444433222 333355555554432
Q ss_pred --CCHHHHHHHHHHHHHcC
Q 047305 649 --GQVKEALNIFSVLVECK 665 (767)
Q Consensus 649 --g~~~~A~~~~~~~~~~~ 665 (767)
.++++|..+|+++.+.|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 25555666666655554
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.01 E-value=6.3 Score=38.42 Aligned_cols=128 Identities=21% Similarity=0.303 Sum_probs=61.6
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 047305 114 CEKALESFGKMKEFDCQPDVYIYNAVLNIAFR--K----QLFLLALAVYYEMVKLNC---LPNIVTFSLLINGLSKSGKT 184 (767)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 184 (767)
+++.+.+++.+.+.|+..+..+|-+..-.... . .....|..+|+.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777777776655443322222 1 134566777777776532 2344445544433 22222
Q ss_pred ----HHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccC-C--HhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 185 ----EVAIKMLDEMTQRGILPNKF-TYTIVISGLCQIN-R--ADEAYRLFLKMKDSGCSPDFVAYNA 243 (767)
Q Consensus 185 ----~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (767)
+.+..+|+.+...|+..+-. -+.+-+-++.... . ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 33455555555555544222 1222222222111 1 2345555666666665555444443
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.96 E-value=2.9 Score=35.73 Aligned_cols=80 Identities=15% Similarity=-0.039 Sum_probs=61.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF 717 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 717 (767)
+..++.+-.+.++.+++..+++.+.-.. |..+..-..-++.+...|+|.+|+.+|+.+.+.. |..+....++..-+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 4445555567789999999999998886 7777888888999999999999999999987654 555555555555443
Q ss_pred cCC
Q 047305 718 SKD 720 (767)
Q Consensus 718 ~~~ 720 (767)
..|
T Consensus 90 ~~~ 92 (160)
T PF09613_consen 90 ALG 92 (160)
T ss_pred HcC
Confidence 333
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.93 E-value=18 Score=40.09 Aligned_cols=225 Identities=14% Similarity=0.007 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHhhhC----CCCCCHhhHHHHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSV-------TYGTLIN-GLQRVDREEDAFRIFGQMPQN----GCTPSPAVYKSLMT 574 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 574 (767)
....++.+|..+..++...-..|+.. .++.+-. +....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45567777777777666542222211 2222221 223456777777777766542 12233444555555
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchH------HHHHHHHhcCCHHHH--HHHHHHhh---hcCCCCCccchHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESM------KSIEEFLQKGEVENA--IQGLLEMD---FKLNDFQLAPYTIWLI 643 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------~l~~~~~~~g~~~~A--~~~~~~~~---~~~~p~~~~~~~~l~~ 643 (767)
+..-.|++++|..+..+..+........+. .-+..+..+|+...| ...+.... .+..|-+.......+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 566667788877776666543222222111 224445566632222 22222211 1112332222222222
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC--CC--hHh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAI--VT--PPS--CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLR 713 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~ 713 (767)
++...-+++.+..-..+..+.+.. |. ... +..|+.++...|++++|...+.++......+... ...+.+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 222222355555555554332211 11 111 2357788888999999999888886654333211 1111222
Q ss_pred HHh-hcCCccHHHHHHHHHH
Q 047305 714 SLL-FSKDNKKVHAYHLLCR 732 (767)
Q Consensus 714 ~l~-~~~~~~~~~a~~~~~~ 732 (767)
..+ -..|+ ..++.....+
T Consensus 666 ~~lwl~qg~-~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGD-KELAAEWLLK 684 (894)
T ss_pred HHHhcccCC-HHHHHHHHHh
Confidence 222 25666 5666555544
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.77 E-value=12 Score=37.89 Aligned_cols=146 Identities=9% Similarity=-0.007 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-c--ch
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-D--ES 603 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~--~~ 603 (767)
...++..++..+.+.|+++.|...+..+...+... .+.+....+..+...|+..+|+..++..++...... . ..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888889999999999999998887643211 345555566777788999999999888886222211 1 11
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc------CCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 604 MKSIEEFLQ--KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD------GQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 604 ~~l~~~~~~--~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
..+...... ............ ......++..++.-.... +..+++...|+++.+.. +....+|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~ 297 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKES------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHS 297 (352)
T ss_pred HHHhhccccccccccccchhhhh------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHH
Confidence 111100000 000000000000 000112255555555555 78899999999999886 666667777
Q ss_pred HHHHHHh
Q 047305 676 LIHGLCK 682 (767)
Q Consensus 676 l~~~~~~ 682 (767)
++..+.+
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7665543
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.76 E-value=0.15 Score=48.54 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|.+++|++.|..+++.+|.....+...+.++.+.++...|++..... ..++|++...|-.-+.+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHHH
Confidence 5688999999999999999999999989999999999988887776653 235688887788888888888999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+..+.+.++.+....+ +-.+.-..+..++-...+++..+.
T Consensus 205 l~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 205 LALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 9999888766554443 334445566666666666666553
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.53 E-value=4.2 Score=40.46 Aligned_cols=109 Identities=14% Similarity=-0.007 Sum_probs=57.0
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh---cCChhHHHHHHHHHHHC------CC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK---RGYLDLAMDVFLYTLKN------GF 701 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~ 701 (767)
.|++...+..++..+.+..+.++..+-+++++... +.++..|..+++.... .-.+++.+..|.+.++. +.
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 46666656666666666666666666666666654 5556666555554332 23455555555555442 10
Q ss_pred ---CCC-HH---HHHH----HHHHHhhcCCccHHHHHHHHHHHHHcCC-CCCC
Q 047305 702 ---ILR-PR---VCNY----LLRSLLFSKDNKKVHAYHLLCRMKSVGY-DLDA 742 (767)
Q Consensus 702 ---~~~-~~---~~~~----l~~~l~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 742 (767)
.++ +. ...+ +..++ .+.|. .+.|..+++-+.+-.+ .|+.
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl-~~aG~-~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFL-RQAGY-TERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHH-HHCCc-hHHHHHHHHHHHHHHcCCccc
Confidence 000 00 1111 22222 26676 7777777777776664 4443
No 307
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.44 E-value=13 Score=37.39 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+|...+++..+..-.+.|+.+|.++.+.+ ..++..++.+.+.-+ ..|++..|..+|+--+...|+.+.........
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456667777777777888999999998877 456777778887755 46888899999998888888888777777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 610 FLQKGEVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+...++-+.|...++....+... .-..+|..++.--..-|+..-|..+=+++.+.-
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 88888888887666642111111 112347777777777788888888888887663
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.17 E-value=0.19 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=13.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
+..++.+|.+.|++++|++.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.05 E-value=13 Score=36.35 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHc--cC----CHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH---
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQ--IN----RADEAYRLFLKMKDSGC---SPDFVAYNALLNGFCKLRRV--- 254 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--- 254 (767)
...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++..++..++.. ..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34555666666666555554442222222 11 23456667777766431 2333444444333 22222
Q ss_pred -HHHHHHHHHHHhCCCCC
Q 047305 255 -DEALALLRSFEKDGFVP 271 (767)
Q Consensus 255 -~~a~~~~~~~~~~~~~~ 271 (767)
+.++.+++.+.+.|+..
T Consensus 159 ~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 34455555555555443
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.99 E-value=0.33 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
+|..+..+|.+.|++++|.+.|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777778888888888887777666
No 311
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=4.2 Score=37.14 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----------cc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----------AP 637 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----------~~ 637 (767)
+...-..-+.+.|++.+|..-|.+++ -.+..+..+..|.++ ..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi---------------------------~~l~~L~lkEkP~e~eW~eLdk~~tpL 232 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAI---------------------------ICLRNLQLKEKPGEPEWLELDKMITPL 232 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHH---------------------------HHHHHHHhccCCCChHHHHHHHhhhHH
Confidence 33334445668889999988887765 222222111222222 23
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+.++..++...|+|-++++.-..++... +.+..+|..-+.+....=+.++|..-|.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 6677777888899999999999998886 7788888888888888888899999999988743
No 312
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.77 E-value=1.5 Score=40.68 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 96 VVSDVFFVLISGYYKV-----GDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVT 170 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 170 (767)
.+..+|...+..+... +..+--...+..|.+.|+..|..+|+.|++.+-+.. +.|....
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHH
Confidence 3455566666555432 334555556677888888888888888887543321 1222211
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 047305 171 FSLLINGLSKS-GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA 219 (767)
Q Consensus 171 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 219 (767)
- ..|..- .+-+-+..++++|...|+.||..+-..++.++.+.+..
T Consensus 129 Q----~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 Q----KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred H----HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1 112221 23345788888888888888888888888888777653
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.73 E-value=17 Score=37.26 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 649 GQVKEALNIFSVLVEC-KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+.+..+.+.+++... |...-...+--+..-|....++++|++++..+++.
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 3455555555555322 21111222222334455555666666666655544
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.72 E-value=0.3 Score=28.80 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.++.++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455566667777777777777766664
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.62 E-value=25 Score=38.86 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHH
Q 047305 357 GLLDQARSLQVEIWKRD---SLPNTHTFTILICGM--CRNGMVDDAQKLFNKMEKAGC---------FPSVGMFNALIDG 422 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~ 422 (767)
++...|.+.++.+.... ..+...++..++.+. .+.+..+++.+.++.+..... .|...+|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 56666666665554322 123333333333332 234545555555555522111 1234455555554
Q ss_pred H--HHcCCHHHHHHHHHHh
Q 047305 423 L--CKAGELEKANLLFYKM 439 (767)
Q Consensus 423 ~--~~~~~~~~A~~~~~~~ 439 (767)
+ ...|+++.+...++++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3 3566666666665555
No 316
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.60 E-value=18 Score=37.14 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTY-GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW---SCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|+..++ +.++..+.+.|-+.+|...+..+... .+|+...|...+.. ...+| ..-+..+|+.++.....++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 4555554 45667777888889999999888775 35677777776654 33444 7888889999988877888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
......-...|..+.+-..+.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHhhccCCCcccccHHHHH
Confidence 7666555567776666555554
No 317
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.48 E-value=1.8 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLR 252 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (767)
=+++++++|...|+.||..+-..|+.++.+.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 35666666666666666666666666666544
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.42 E-value=1.3 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 588 LWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
-+++.++.+|.+..+.+.++..+...|++++|++.+.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555666666666666666666666666666666663
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.39 E-value=27 Score=38.78 Aligned_cols=228 Identities=11% Similarity=-0.022 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCChhhHH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDI-------ITYNSLIN-GFCKVGNINGALKLFKELQLK----GLRPDSVTYG 535 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 535 (767)
+.......++++|..+..++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 34445667888888888776543222221 13333322 234678899999988887754 1233445667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH-----HHHHHhcCC--hhHHHHHHHHHH----hccCCCccch-
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL-----MTWSCRRRK--FSLAFSLWLQYL----RDISGRDDES- 603 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~--~~~A~~~~~~~~----~~~p~~~~~~- 603 (767)
.+..+..-.|++++|..+..+..+..-.-+...+..+ ..++...|+ +++....|...- ...|-.....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 7777888889999999888887654222333333322 233666773 333333333322 2223222222
Q ss_pred --HHHHHHHHhc-CCHHHHHHHHHHh-hhcCCCCCcc-chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh----HH
Q 047305 604 --MKSIEEFLQK-GEVENAIQGLLEM-DFKLNDFQLA-PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS----CV 674 (767)
Q Consensus 604 --~~l~~~~~~~-g~~~~A~~~~~~~-~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~ 674 (767)
..+..++.+. +...+|..-+.-. .....|.... .+..|+.++...|++++|...++++......+.+.+ -.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 2334444441 1222221111111 1111222222 233778888899999999999999865433332222 22
Q ss_pred HHHHH--HHhcCChhHHHHHHHH
Q 047305 675 KLIHG--LCKRGYLDLAMDVFLY 695 (767)
Q Consensus 675 ~l~~~--~~~~g~~~~A~~~~~~ 695 (767)
..+.+ ....|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2367888888777665
No 320
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.33 E-value=4.5 Score=40.23 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
+..+...+...|..+.|+.+++-+++.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44555556677999999999999988765
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=1 Score=40.74 Aligned_cols=106 Identities=11% Similarity=-0.047 Sum_probs=77.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.-|....++..|+..+.+.- ...|..+..|.+-+..+.+.++++.+..--+++++.. +........++..+.....+
T Consensus 17 gnk~f~~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccccchhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccc
Confidence 445566667888888777732 2468888888888888999999999999888888875 66666777888888888889
Q ss_pred hHHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLK----NGFILRPRVCNYLLRS 714 (767)
Q Consensus 687 ~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 714 (767)
++|+..++++.. ..+.+..++...|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999999988843 2333334444444444
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.10 E-value=2.7 Score=34.42 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred cchHHHHHHHhhcC---CHHHHHHHHHHHHH-cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 636 APYTIWLIGLCQDG---QVKEALNIFSVLVE-CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 636 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
....+++|++.+.. +..+.+.+++.+.+ ........+...|+-++++.|++++++++.+..++.. |++..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--PNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--CCcHH
Confidence 34788899988875 56778889999886 3223346677778889999999999999999888754 66553
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.02 E-value=5.5 Score=35.42 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047305 99 DVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDV--YIYNAVLNIAFRKQLFLLALAVYYEMVKL 162 (767)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 162 (767)
..+..+...|.+.|+.++|++.|.++......+.. ..+-.+++...-.+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56677888888888988999888888875433333 35666777777888888887777766543
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.99 E-value=2.9 Score=35.05 Aligned_cols=71 Identities=18% Similarity=0.021 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
.++.+++...+..+.. ..|..+..-..-++.+...|+|++|+.+++++.+.+ +..+..--.++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrv-LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRV-LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA-GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHH-hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC-CCchHHHHHHHHHHHhcCC
Confidence 4444554444443321 235555555555556666666666666666665543 2223333344444444443
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.60 E-value=2.5 Score=40.22 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+..++..+...|+++.+.+.+++..+.. |-+...|..+..+|.+.|+...|+..|+++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444444555555555555555555544 4444455555555555555555555555443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.53 E-value=32 Score=38.09 Aligned_cols=49 Identities=22% Similarity=0.059 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH
Q 047305 319 SEAGKVKDAMKLLSDMRERGI-VPD-----TYCYNA--LIKGFCDLGLLDQARSLQV 367 (767)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~--l~~~~~~~~~~~~a~~~~~ 367 (767)
+-.+++..+...+..|.+... .|+ ...+.. ..-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 335777778888877765411 111 112222 2222335678888888886
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.48 E-value=9.6 Score=32.09 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=11.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
|...+......|.-.+|+.+.+.+.
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4444444444444444444444443
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.46 E-value=1.5 Score=38.10 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 582 FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
+++|+.-|++++..+|+...+++.++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 466777778888888999999988888887654
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.29 E-value=0.7 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+|..++.+|...|++++|...|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888888888888763
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.21 E-value=0.49 Score=29.81 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.8
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+++.++.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 467788888888888888888887753
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.20 E-value=59 Score=40.71 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKI--EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
.+..+-.+++.+.+|...++.-..... ......|..+...|..-++++...-+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344556667777777777776311100 01122344444477777777776666653111 12222 23334455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNAL-IDGLCKAGELEKANL 434 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~ 434 (767)
.|++..|...|+.+.+.++ +....++.++......|.++..+-..+...... .+....++.+ +.+--+.++|+....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 6777777777877777654 335556666665556666666665554443321 1122222222 233345566655544
Q ss_pred HH
Q 047305 435 LF 436 (767)
Q Consensus 435 ~~ 436 (767)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 332
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.89 E-value=13 Score=32.47 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 206 YTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 206 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
+..++..+...|++-+|+.+.+..... +......++.+..+.+|..--..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666667766666666554221 111223355555555555544444444433
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.74 E-value=3 Score=37.17 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCChhHHH
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA---IVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
+.|.+.|.+++....-+++.....|+..|. ..+.++|+.++-++++... .+|+.++..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455566666655544556665555554444 6677888888888765431 345778888888888888877763
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.74 E-value=2.7 Score=43.37 Aligned_cols=104 Identities=17% Similarity=0.010 Sum_probs=77.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|+...|.+.+.........-..+....|++.+.+.|-...|-.++.+.+... ...+-++..+..++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4568888888887777654332234456777888888888888888888877654 455667777888888888899999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+.|+++++..|.++..-..+....+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999888888887776655544
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.66 E-value=19 Score=34.15 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+...+..|...|.+.+|.++-++++..+ |.+...+-.|...|...|+--.|...|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 5556677888999999999999999988 88888888999999999998888888877643
No 336
>PRK10941 hypothetical protein; Provisional
Probab=89.31 E-value=3 Score=39.77 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.++-.+|.+.++++.|+...+.++... |.++.-+.--|-+|.+.|.+..|..-++..++.. |+.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~--P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC--PEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CCchh
Confidence 6677778999999999999999999987 8888888889999999999999999999998865 65554
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.18 E-value=27 Score=35.34 Aligned_cols=103 Identities=12% Similarity=-0.111 Sum_probs=57.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCC-CccchHHHHHHHH-hcCCHHHHHHHHHHhhhcCCCC----CccchHHHHHHHhh
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISG-RDDESMKSIEEFL-QKGEVENAIQGLLEMDFKLNDF----QLAPYTIWLIGLCQ 647 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~p~----~~~~~~~l~~~~~~ 647 (767)
..+.+.|-+..|.++.+-++..+|. ||......+..|+ +.++++--+............. -|..-.+.+-++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 4466777777777777777777777 6655555555554 4566655555554422210011 12334455555555
Q ss_pred cCCH---------------HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 648 DGQV---------------KEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 648 ~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
.++- ++|.+.+++++..- |.+...|.+..
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f----P~vl~~Ll~~l 234 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF----PWVLVPLLDKL 234 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh----HHHHHHHHHHh
Confidence 6665 77888888876542 34444444433
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.08 E-value=6.6 Score=34.91 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS--VTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
..+..+..-|.+.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777765444333 2455666666777777777777666654
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.68 E-value=0.91 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+++.++.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999999876
No 340
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.58 E-value=16 Score=31.87 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047305 83 WQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL 162 (767)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 162 (767)
.+++..+.+.++++++..+..+++.+.+.|++....++.+ .++-+|.......+-.+ .+....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 4566677778899999999999999999998776655544 45556655544444222 23445556655555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
= ...+..++..+...|++-+|+++....... +......++.+..+.++...=..+|+-..+
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 114566778888899999999998876432 333345566666666666555555544443
No 341
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.44 E-value=2.2 Score=28.61 Aligned_cols=39 Identities=21% Similarity=-0.017 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
+...++-++.+.|++++|+++.+.+++. .|+......|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 4556777788888888888888888774 37766544443
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.82 E-value=25 Score=33.34 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
.+..|...|.+.+|++.-++. ...+|-+...+-.+...|+..|+--.|.+-|+++
T Consensus 285 va~~yle~g~~neAi~l~qr~-ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRA-LTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 355566677777776555542 2345666666777777777777766666666665
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.66 E-value=1.2 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.|+.+|...|+.+.|++++++.+..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777777777777777643
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.46 E-value=51 Score=36.42 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047305 497 ITYNSLINGFCK---VGNINGALKLFKELQL 524 (767)
Q Consensus 497 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 524 (767)
..+..||..|.+ ..++.+|++++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345556666653 3456666666655544
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.45 E-value=0.74 Score=25.42 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCCHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~ 658 (767)
..++.++...|++++|..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444444443
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.00 E-value=7.4 Score=35.84 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=57.1
Q ss_pred hhcCCHHHHHHHHHHHHH----cCCCCC--hHhHHHHHHHHHhcCCh-------hHHHHHHHHHHHCCCC----CCHHHH
Q 047305 646 CQDGQVKEALNIFSVLVE----CKAIVT--PPSCVKLIHGLCKRGYL-------DLAMDVFLYTLKNGFI----LRPRVC 708 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~----~~~~~~ 708 (767)
.....+++|++.|.-++- .+.++. ...+..++|.|...|+. ..|...|+++.+..-. .+....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344567777777766531 221333 44567788888877773 4455555555544322 233456
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 709 NYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 709 ~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
.+|++-|..+.|+ +++|...+.++...+-
T Consensus 168 ~YLigeL~rrlg~-~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 168 LYLIGELNRRLGN-YDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHcCCC
Confidence 7778887778887 8888888888876543
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.91 E-value=2.8 Score=43.36 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHH-h
Q 047305 549 DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLE-M 626 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~ 626 (767)
-|-.++..|.. .+.|--...+...-.+.-.|+...|...+..++..-|.... ....++....+.|-...|-..+.. +
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34455544432 22333333332222234568889999988888877776654 446888888888887788777766 3
Q ss_pred hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 627 DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 627 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
.. ....+-.+..+|++|....+.+.|++.|+.+.+.. +.++++-+.|..+-+
T Consensus 670 ~~--~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AI--NSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hh--cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 32 24445558888899999999999999999998887 777777776655544
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.66 E-value=39 Score=34.26 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.1
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLA 488 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (767)
.+....++..+...+..+|+.+.|.+++++++
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667778888888888898888888887764
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.17 E-value=1.1 Score=24.72 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+...++.++...|+.++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678999999999999998875
No 350
>PRK09687 putative lyase; Provisional
Probab=86.10 E-value=35 Score=33.16 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=79.6
Q ss_pred CHhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCC
Q 047305 495 DIITYNSLINGFCKVGNI----NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR-----EEDAFRIFGQMPQNGCTPS 565 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~ 565 (767)
+...-...+.++...|+. .++...+..+... .|+..+-...+.++...+. ...+...+..+. ..++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCC
Confidence 333334444555555542 3455555554333 3344444344444433321 112223332222 2334
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-EVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
..+-...+.++.+.++ ++|+..+..+++. +++.+....+.++...+ ..+.++..+..+.. ++ +..+....+++
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~-~~~VR~~A~~a 215 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD--PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DK-NEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CC-ChHHHHHHHHH
Confidence 4455555555555554 4455555555532 22233333444444332 12334444444221 12 22234445555
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+.+.|+ .+|+..+-+.++.+ + .....+.++...|. ++|+..++++.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh
Confidence 555555 44555555554432 1 23344455555555 345555555544
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.85 E-value=37 Score=33.29 Aligned_cols=181 Identities=14% Similarity=-0.010 Sum_probs=105.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFC----KVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR----V 544 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 544 (767)
..+++..+...+......+ +......+...|. ...+..+|..+|..+...|. ......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 3455666777776665532 2233333333333 23457788888887776653 2233334444443 3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----C--ChhHHHHHHHHHHhccCCCccchHHHHHHHHh----c
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-----R--KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----K 613 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 613 (767)
.+..+|...++++.+.|..+.......+...|..- - +...|...|.++.... ++.+...++..|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 47888999999998877444323344444444332 1 2337888888877665 56666677766654 3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC---------------CHHHHHHHHHHHHHcC
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG---------------QVKEALNIFSVLVECK 665 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 665 (767)
.+.++|...+.+.....+ ......++ .+...| +...|...+.++...+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 478888888888654433 44466666 555555 5555555555555544
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.27 E-value=8.7 Score=35.37 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=40.3
Q ss_pred hHHHHHHHhhcCC-------HHHHHHHHHHHHHcCCC-----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 638 YTIWLIGLCQDGQ-------VKEALNIFSVLVECKAI-----VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 638 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
+..++|.|...|+ +..|++.|.++.+..-. .+......+|....+.|+.++|.+.|.+++..+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4555555555555 34555566665433212 12455667788888888888888888888765433
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.03 E-value=1.5 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=13.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+..++.++...|++++|...++++++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555555555555555555555544
No 354
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=36 Score=31.84 Aligned_cols=187 Identities=8% Similarity=0.002 Sum_probs=119.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH-
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCT-PSPAVYKSLMTWSCR-RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE- 617 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~- 617 (767)
+.+..+-+.|+++-+.++..+.. -+...|...+ +.. ..+..+-.+.++++++.+|.|-.++...-......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i--L~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI--LRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 34566778899999988874311 1233333322 222 236788889999999999999999987777777777776
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCC-----hhHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK-RGY-----LDLAMD 691 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~~A~~ 691 (767)
.-++....+-. .+..+-.+|...-|++..-+.++.-+.+..++++.++ -+..+|+.-...... .|- .+.-+.
T Consensus 131 rELef~~~~l~-~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLD-DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHh-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 44455555432 3455566799999999999999999999999999884 444566653332222 232 233455
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHhhcCCc-cHHHHHHHHHHH
Q 047305 692 VFLYTLKNGFILRPRV-CNYLLRSLLFSKDN-KKVHAYHLLCRM 733 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-~~~~a~~~~~~~ 733 (767)
+..+.+. ..|+... |++|-+.+-...|- ....+......+
T Consensus 209 yt~~~I~--~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l 250 (318)
T KOG0530|consen 209 YTKDKIL--LVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENL 250 (318)
T ss_pred HHHHHHH--hCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHH
Confidence 5666665 5577665 77777776532441 023444444444
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.09 E-value=1.3e+02 Score=38.05 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
.+|...++....+|+++.|...+-.+.+.+ -+..+...+..+...|+-..|..++++.++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457777777777777777777776666543 3344555566666777777777777777743
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.08 E-value=6.9 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 545 DREEDAFRIFGQMPQN---GCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
.+.++|+.++.++++. +-.+++..+.+|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444331 1133444444444444444444443
No 357
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.04 E-value=18 Score=38.00 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047305 71 SMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFL 150 (767)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 150 (767)
.+.++.|+++.|.++..+.. ++.-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 34445556655555544432 334566666666666666666666655443 334555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047305 151 LALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDE 193 (767)
Q Consensus 151 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 193 (767)
....+-....+.| . .|...-+|...|+++++++++..
T Consensus 710 ~l~~la~~~~~~g--~----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQG--K----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhc--c----cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444443 1 12222344455666665555544
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.18 E-value=2.1 Score=24.36 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
+..+..++...|++++|...|.+.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34445555555666666666655555444
No 359
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.98 E-value=60 Score=33.40 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=75.3
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA-----SLQTMVEQYCTAGLIHKAYKILMQLAE------ 489 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 489 (767)
..+.-.|++.+|.+++-....... .+...++. .++.+.-.+.+.|.+..+..+|.++.+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~----------~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKE----------AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccc----------cCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 345567899999988866532221 22222322 346667777888999999999998875
Q ss_pred -cCCCCCH-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047305 490 -SGNLPDI-----------ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR 543 (767)
Q Consensus 490 -~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 543 (767)
.|..|.. .+||. .-.|...|++-.|.+.|...... +..++..|..++.+|..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3433321 23433 34577899999999999988764 35588899999999864
No 360
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=21 Score=37.56 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.+.|-.++|+++- ..|+.. .+...+.|+++.|.++..+. +++.-|..++.+....
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 344555566666666555432 222221 12234677778777764433 5556677778888888
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|++..|.+.+.+... |..|.-.+...|+-+--..+-....+.| +.| .-..+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHH
Confidence 888888777766321 6667777777777766666666666665 332 2334778889998888887
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
.+-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.44 E-value=8.8 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
++.+-++.+...++-|++....+.+++|.+.+++.-|.++++-+... ...+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45555566666667777777777777777777777777777766532 1223345554443
No 362
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.30 E-value=3.6 Score=41.73 Aligned_cols=96 Identities=11% Similarity=-0.048 Sum_probs=80.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+..+..-++++.|+..+.+.- ..+|+.+..+...+.++.+.+++..|+.-+.++++.. |.-..+|..-+.++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 445567788999988888832 2469999989999999999999999999999999987 66677888888999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHH
Q 047305 687 DLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~ 706 (767)
.+|...|+.... +.|+..
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHHhhh--cCcCcH
Confidence 999999999865 457755
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.21 E-value=17 Score=30.01 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTYGTLINGLQRVDR---EEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.++..+-..+..++.+..+ ..+.+.+++.+.+...+. .......+.-.+.+.|+|+.+..+.+..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4455566667777776654 456788888887622222 222333444457789999999999999998888887764
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.48 E-value=70 Score=33.14 Aligned_cols=239 Identities=12% Similarity=0.056 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC------CHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 047305 481 YKILMQLAESGNLPDIITYNSLINGFCKVG------NINGALKLFKELQLK-GLRPD-SVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
..+|+...+. .++...|+..|..|...- ....-..+|+..... +..++ ...|..+.-.+..... |..
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~ 376 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---ARE 376 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhH
Confidence 3555555443 345555655555544321 334444555555543 23333 2345444444444433 333
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH---HHhccCCCccchHHHHHHHHhcCC-HHHHHHHH--HHh
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQ---YLRDISGRDDESMKSIEEFLQKGE-VENAIQGL--LEM 626 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~--~~~ 626 (767)
....+...++..+...|..-+....+... .+.-.|.+ .++..+..+......... .|+ ....+..+ ..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~---~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS---EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh---hccchhHHHHHHHHHHH
Confidence 33333322345566666655555443221 22222222 222223222222111111 233 22222222 223
Q ss_pred hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCC
Q 047305 627 DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL---CKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 627 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
.....|+..+.-+.+...+.+.|-+.+|...|.+....- |++...+..+++.- ...| ..-++.+|+.|+.. +.-
T Consensus 452 ~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~ 528 (568)
T KOG2396|consen 452 LSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGA 528 (568)
T ss_pred HHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCC
Confidence 333457777778888999999999999999999998874 77877777777653 2344 88899999999864 457
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 704 ~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+.+|-..+..=. ..|. .+.+-.++.+.+
T Consensus 529 d~~lw~~y~~~e~-~~g~-~en~~~~~~ra~ 557 (568)
T KOG2396|consen 529 DSDLWMDYMKEEL-PLGR-PENCGQIYWRAM 557 (568)
T ss_pred ChHHHHHHHHhhc-cCCC-cccccHHHHHHH
Confidence 8998887766655 6776 666666666654
No 365
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.29 E-value=18 Score=35.02 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc----chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD----ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
..|.-=+.-|.+.+++..|...|.+.++....++. .|.+.+.+....|++..|+..-... .+.+|.+.-+|..=+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhh
Confidence 34444455677888888888888888876655554 3345566666677777776665552 234577777677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.++....++++|..+.+....
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777777776643
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.05 E-value=95 Score=34.35 Aligned_cols=223 Identities=14% Similarity=0.082 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-------HhHHHHHHHHHHHCCCCCCHH---
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR-------ADEAYRLFLKMKDSGCSPDFV--- 239 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~--- 239 (767)
..-.++-.+.++|++++|.++....... +......+...+..|....+ -+....-|++........|+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 3345666778899999999888554432 33455667777777766532 234555566555443322443
Q ss_pred HHHHHHHHHHh-cCCHHH----HHHHH--HHH-HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047305 240 AYNALLNGFCK-LRRVDE----ALALL--RSF-EKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLY 311 (767)
Q Consensus 240 ~~~~l~~~~~~-~~~~~~----a~~~~--~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 311 (767)
.|..+ ..|-- ...... .++++ +-. .......+...+ ..-.+++-...+.+.-+....+ ....
T Consensus 192 vY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 192 VYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhccc-chhH
Confidence 23322 11111 111101 11111 111 011100000000 0001122222222222222222 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh
Q 047305 312 GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDS-LPNTHTFTILICGMCR 390 (767)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (767)
-.....+.-.|+++.|.+.+-. ..+...+.+.+...+.-| |-+......-..+..... .+...-+..||..|.+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH
Confidence 2234455668999999999877 112233444444443333 332222221122222211 1122557788888876
Q ss_pred ---cCCHHHHHHHHHHHHHcC
Q 047305 391 ---NGMVDDAQKLFNKMEKAG 408 (767)
Q Consensus 391 ---~g~~~~A~~~~~~~~~~~ 408 (767)
..++..|..++-.+....
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-
T ss_pred HHhccCHHHHHHHHHHHHHcC
Confidence 567888888888776643
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.95 E-value=14 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...+..+.+.+...+|+..... +. ..|.+...-..+...||-.|+|++|+.-++.+-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 3446677888999999988888 44 358888888999999999999999999999887654
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.90 E-value=97 Score=34.38 Aligned_cols=209 Identities=8% Similarity=-0.037 Sum_probs=117.1
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 473 TAGLIHKAYKILMQLAESG-NLPD--IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
...+.+.|...+....... ..+. ...+..+.......+...+|...++...... .+......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 4566788999998774443 2221 1234444444444432556666666654331 244445555555568889998
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~ 628 (767)
+...+..|.... .....-.--+++++...|+.++|...|+++... ..++..... .+.|..-. ...... ...
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa-~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA-QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH-HHcCCCCC-CCCCCCCchh
Confidence 888888886532 223333334566666789999999999887532 123322111 11221100 000000 000
Q ss_pred cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 629 KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
...+. ..-...+..+...|+..+|...+..+.+. .++.-...++......|..+.++....+.
T Consensus 403 ~~~~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SALTQ--GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhcc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00011 12345566777889999999888888764 34455667777777888888887766543
No 369
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.86 E-value=10 Score=36.14 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047305 113 DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVK 161 (767)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 161 (767)
++++++.+...-.++|+-||.++++.+++.+.+.+++..|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445665555555566666666666666666666666665555555544
No 370
>PRK10941 hypothetical protein; Provisional
Probab=80.79 E-value=6.8 Score=37.44 Aligned_cols=51 Identities=14% Similarity=-0.083 Sum_probs=23.8
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+|.+.++++.|..+.+.++...|+++.-+-..+..|.+.|.+..|+..+..
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344445555555555444444444444444444444444444444444443
No 371
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.29 E-value=13 Score=28.59 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 189 KMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 189 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
+-++.+...++.|++....+.+++|.+.+++.-|..+|+-.
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
No 372
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.26 E-value=14 Score=28.67 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=11.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 164 CLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
+.|++.+....+++|.+.+++..|.++|+.+
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 373
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=18 Score=33.24 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.....++...|++-++++...++++..|.+..+++..+.+....-+..+|...+.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 334445555667778888888888888888877777777777777777777766666
No 374
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.02 E-value=1.6 Score=42.01 Aligned_cols=94 Identities=14% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
....|.+++|+..+.... ...|.....|...+.++.+.++...|+.-+..+++.+ +.....|-.-+.+....|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 345688999988888732 2468888889999999999999999999999999987 66666677777788889999999
Q ss_pred HHHHHHHHHCCCCCCH
Q 047305 690 MDVFLYTLKNGFILRP 705 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~ 705 (767)
...+..+.+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 9999999987755543
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.01 E-value=53 Score=30.77 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH
Q 047305 392 GMVDDAQKLFNKMEKAGCFPS---VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV 468 (767)
Q Consensus 392 g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (767)
..+++|+.-|.+..+...... -.+...++..+.+.+++++....++++.. +.+.. .....+....+.++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------YIkSA--VTrNySEKsIN~Il 112 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------YIKSA--VTRNYSEKSINSIL 112 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHH--HhccccHHHHHHHH
Confidence 456667777776655422212 22344566677778888888777777641 10000 01112333445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChh-------
Q 047305 469 EQYCTAGLIHKAYKILMQLAES-GNLPDII----TYNSLINGFCKVGNINGALKLFKELQLKGL----RPDSV------- 532 (767)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~------- 532 (767)
+..+.+.+.+--.++++.-++. .-..+.. +-..+...|...|.+.+..++++++....- ..|..
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 5544444444444444322111 0011222 224566777778888888888887775421 11221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHH----HHHHhcCChhHHHHHHHHHHhc
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLM----TWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
.|..=+..|....+-..-..++++.+.. ..-|.+.....+- .+..+.|++++|-.-|=++.+.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 2333444555566666666777776542 2234443333222 2244567788876666555544
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.98 E-value=55 Score=30.99 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHhhh----CCCCCCHhhHH
Q 047305 500 NSLINGFCKVGNINGALKLFKELQ----LKGLRPDSVTYGTLI-NGLQRVDREEDAFRIFGQMPQ----NGCTPSPAVYK 570 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~ 570 (767)
..++..+.+.|.+.+|+.+...+. +.+-+|+..+...+- .+|-.-.+..++..-+..+.- .-.+|-...-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 357788899999999998766554 334455544332221 234333444444333333321 12344333333
Q ss_pred HHHHH--HHhcCChhHHHHHHHHHHhccCC---CccchHHH---HHHHHhcCCHHHHHHHHHHh-h-hcCCCCCccchHH
Q 047305 571 SLMTW--SCRRRKFSLAFSLWLQYLRDISG---RDDESMKS---IEEFLQKGEVENAIQGLLEM-D-FKLNDFQLAPYTI 640 (767)
Q Consensus 571 ~l~~~--~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~-~~~~p~~~~~~~~ 640 (767)
-++.. .|...++..|..+|-++++.+.. +..+...+ .-.-...+..++.-..+... . ...+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 33333 35667899999999888876543 33333322 22222344444432222221 1 1112333444556
Q ss_pred HHHHHhhc--CCHHHHHHHHHHHHHc
Q 047305 641 WLIGLCQD--GQVKEALNIFSVLVEC 664 (767)
Q Consensus 641 l~~~~~~~--g~~~~A~~~~~~~~~~ 664 (767)
++.++... .++.+|+.-|..-+..
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el~~ 314 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDELHQ 314 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHhcc
Confidence 66666544 5778888877765533
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.63 E-value=26 Score=27.09 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 470 QYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG 526 (767)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (767)
.+...|++++|..+.+.. ..||...|..+.. .+.|..+++..-+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345556666666555443 2566666655433 35566665555555555544
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.54 E-value=15 Score=28.18 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=21.5
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+|++......++..+...|++++|++.+-++++.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46666666677777777777777777666666543
No 379
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.50 E-value=46 Score=32.08 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=49.7
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEK---IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNA 348 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (767)
...+...++..-....+++.+...+-++.... ..|+. +-.+.++.+.+ -++++++.++..=++.|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444444555666665555554320 01111 11122232222 345566666666566666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 047305 349 LIKGFCDLGLLDQARSLQVEIWKR 372 (767)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~ 372 (767)
++..+.+.+++.+|.++...+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666655555443
No 380
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.94 E-value=12 Score=29.13 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 047305 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDS 232 (767)
Q Consensus 186 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 232 (767)
+..+-++.+...++.|++....+.+++|.+.+++..|..+|+-.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777776543
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.37 E-value=4 Score=27.44 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=21.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
+.-++.+.|++++|....+.+++..|++..+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34446678888888888888888888776654
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.06 E-value=1.2e+02 Score=33.59 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=58.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 105 ISGYYKVGDCEKALESFGKMKEFDCQP---DVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKS 181 (767)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (767)
++.+.+.+.+++|+++-.... |..| -.......+..+.-.|+++.|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 556667778888887766443 2233 223456667777777888888777777764 3344555555555554
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 047305 182 GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQ 215 (767)
Q Consensus 182 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 215 (767)
++... ++.-++......+...|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 44432 22222222222355667777776665
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.92 E-value=92 Score=32.40 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 511 NINGALKLFKELQLK-GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
+.+..+.+...+... |...-...+..+-.-|....++++|++++..+++.+ ..|...-..++..
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 344444444444432 222233344444455666666667776666665543 3344444444443
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.33 E-value=4 Score=26.11 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
..|+.+|...|+.+.|.+++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888888888888888888888654
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.81 E-value=8.7 Score=28.18 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=28.9
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchH---HHHHHHHhcCCHHHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESM---KSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~ 624 (767)
...+.++|+..|.++++..++.+.-+. .++.+|...|++.++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776666554333 33455666666666554443
No 386
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.64 E-value=1.3 Score=37.84 Aligned_cols=83 Identities=24% Similarity=0.255 Sum_probs=46.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 047305 69 VISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL 148 (767)
Q Consensus 69 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 148 (767)
+++.+.+.+.+.....+++.+...+...++...+.++..|++.++.++..++++... ......+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 445555566666666677777665545556667777777777766666666655211 1222345555555555
Q ss_pred HHHHHHHHHH
Q 047305 149 FLLALAVYYE 158 (767)
Q Consensus 149 ~~~A~~~~~~ 158 (767)
++.|..+|.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.80 E-value=5.2 Score=23.06 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
|+.+.|..+|+++++..|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567778888888877776666665444
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.74 E-value=12 Score=29.01 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCC-----hHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 647 QDGQVKEALNIFSVLVECKA---IVT-----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+.|++.+|++.+.+..+... .+. ..+...++......|++++|...++++++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666555555432211 111 233445666677777777777777777653
No 389
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.47 E-value=84 Score=30.20 Aligned_cols=115 Identities=9% Similarity=0.061 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 289 YDEAYAWYRKMFE-EKIEPDVVLYGVMIRGLSEA-G-KVKDAMKLLSDMRE-RGIVPDTYCYNALIKGFCDLGLLDQARS 364 (767)
Q Consensus 289 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (767)
+.+|+.+|+.... ..+-.|......+++..... + ....-.++.+-+.. .+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 12333666666666666552 1 22222233333332 2456677888888889999999999888
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 365 LQVEIWKR-DSLPNTHTFTILICGMCRNGMVDDAQKLFNK 403 (767)
Q Consensus 365 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (767)
.+...... ++..|...|..++......|+..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88887766 5567888899999999999988766665554
No 390
>PRK12798 chemotaxis protein; Reviewed
Probab=74.13 E-value=1.1e+02 Score=31.25 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=119.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHHhcCCh
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSVTYGTLING-LQRVDREEDAFRIFGQMPQNGCTPS----PAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 582 (767)
-.|+..+|.+.+..+......+....+..|+.+ .....+...|+.+|+...=. -|. ......-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 468899999998888766556666667777665 44567889999999987642 333 23344445556788999
Q ss_pred hHHHHHHHHHHhccCCCccchH---HHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHHHHhhcCCHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESM---KSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
++...+-.++++.+...+.+.+ .++..+.+.++-..- ..+..+-...+|+ -...|..++..-.-.|+.+-|.-.-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999988888887777665543 334444444422221 2233322222232 3456888888888889999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCCC
Q 047305 659 SVLVECKAIVTPPSCVKLIHGLC-----KRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
.++.... .++ ..-...+..|. -..++++|.+.+..+-...+.|.
T Consensus 281 ~~A~~L~-~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 281 ERALKLA-DPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHhc-cCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 8887654 222 22222333332 34567777777776654444433
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.51 E-value=77 Score=28.91 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
....+..+.+.+.+.+|+...++-++..|.+......+...++-.|++++|...++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344556778899999999999999999999999999999999999999998777664
No 392
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.40 E-value=1.6e+02 Score=32.42 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcc-CCC-ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDI-SGR-DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
++.--|+-++|..+.++++... |-- ....+.++.+|+-.|+-. |++.+.-.......++..-....+-.+.-..+.+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-hHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3556677788888888887543 211 123346778888888754 4455554322212233332334444455557788
Q ss_pred HHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 653 EALNIFSVLVEC-KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 653 ~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
....+.+-..+. +..-...+-..|+-+|...|. .+|+.+++-+..
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 888887777543 222233455667777778885 789999998864
No 393
>PRK09687 putative lyase; Provisional
Probab=71.77 E-value=1e+02 Score=29.98 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=62.0
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG-KVKDAMKLLSDMRERGIVPDTYCYNALI 350 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 350 (767)
+..+-...+.++.+.++ .++...+-.++.. ++...-...+.++.+.+ ....+...+..+... ++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444455555555554 3444444444432 23333333333333322 123444444444432 3445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047305 351 KGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDG 422 (767)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (767)
.++.+.++. .+...+...++.+. .....+.++...|+. +|...+..+.+.. ||..+-...+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 666666653 34444444443321 123455556666664 4666666665532 354444444433
No 394
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=1e+02 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=11.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.+|-.|....-..+-++-.+.+.+.|
T Consensus 149 Rlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 149 RLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 33334444444444444444444444
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.78 E-value=12 Score=27.43 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=30.7
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhH---HHHHHHHHhcCChhHHHHHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSC---VKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~ 693 (767)
++...+.++|+..|+++++.- +..+.-+ -.++.+|+..|++++++++-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888887654 3333333 34555677777777766653
No 396
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=1.2e+02 Score=32.41 Aligned_cols=108 Identities=14% Similarity=-0.112 Sum_probs=76.9
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHH------HHHHhhcC
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIW------LIGLCQDG 649 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l------~~~~~~~g 649 (767)
+...+....+...+...+..+|++.....+++.+....|....+...+.+......|.+......+ +......|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 445566667777777788888888888888888887788777777777776556667776655555 66666667
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
+..++...+.+..+.. +..+.+...++.+....-
T Consensus 157 ~~~~~~~~l~~~~d~~-p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 157 RTAEAELALERAVDLL-PKYPRVLGALMTARQEQC 190 (620)
T ss_pred cHHHHHHHHHHHHHhh-hhhhhhHhHHHHHHHHhc
Confidence 8888888888888775 666666666666544333
No 397
>PRK12798 chemotaxis protein; Reviewed
Probab=68.45 E-value=1.4e+02 Score=30.38 Aligned_cols=223 Identities=12% Similarity=-0.009 Sum_probs=131.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH-HHhcCChhHH
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW-SCRRRKFSLA 585 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 585 (767)
.-|++.....++ ..+..|+.. .....+.+|. .|+..+|.+.+..+.....++...-+-.|+.+ .....+..+|
T Consensus 93 SGGnP~vlr~L~----~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 93 SGGNPATLRKLL----ARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred cCCCHHHHHHHH----HcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 456665544443 333333322 2222333444 68999999999999776667777777777665 4566799999
Q ss_pred HHHHHHHHhccCCCcc---chHHHHHHHHhcCCHHHHHHHHHH-h-hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 586 FSLWLQYLRDISGRDD---ESMKSIEEFLQKGEVENAIQGLLE-M-DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
+++|+.+.=..|..-. ++-.-+....+.|+.+++...... + ....+|--...+..++..+.+.++-..-.. +..
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~ 246 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVE 246 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHH
Confidence 9999998876776433 333346667789999987555444 2 112234433444555555555543222222 334
Q ss_pred HHH-cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhh-cCCccHHHHHHHHHHHHHcC
Q 047305 661 LVE-CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLF-SKDNKKVHAYHLLCRMKSVG 737 (767)
Q Consensus 661 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~-~~~~~~~~a~~~~~~~~~~~ 737 (767)
++. ....--...|..+++.-.-.|+.+-|.-.-++++...-..+... -..+...... .... .+++...++.+....
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~-~~~al~~L~~I~~~~ 325 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD-AESALEELSQIDRDK 325 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc-HHHHHHHHhcCChhh
Confidence 333 23233366888999999999999999999999877542222221 1112222221 2333 667777666655443
No 398
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.21 E-value=49 Score=35.27 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred hcCChhHHHHHHHHHHhccCCCccch------HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDES------MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
+..+|..+.+.|...++..|.|.... ..+.-+|....+.++|.+.+.+.+. .+|.++-.-..+..+....|+-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~-~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE-VDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHhcch
Confidence 56788888888888877666654322 2455667777777777777777542 3566655555666667777888
Q ss_pred HHHHHHHHHHHHc
Q 047305 652 KEALNIFSVLVEC 664 (767)
Q Consensus 652 ~~A~~~~~~~~~~ 664 (767)
++|+....+....
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877777543
No 399
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.99 E-value=53 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
++.++|+.|...++... +..|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77778888766555443 445666777777888888888887765
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.79 E-value=1.8e+02 Score=30.94 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=103.2
Q ss_pred HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCC---
Q 047305 425 KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQ-------LAESGNLP--- 494 (767)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~--- 494 (767)
....+++|...|.-......|+....+... .+.....+..+..++..+|+.+.|..+.++ +..-.+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~s--sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLIS--SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeecc--CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 445567777777766655555443333222 255667777888888888887766655554 33222222
Q ss_pred ----------CHhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHhhh-
Q 047305 495 ----------DIITYNS---LINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGL-QRVDREEDAFRIFGQMPQ- 559 (767)
Q Consensus 495 ----------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~- 559 (767)
|...|.+ -+..+.+.|-+..|.++.+-+......-|+.....+++.| .++.+|.--+++++....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1122222 2345567888999999888888775544666666777766 466777777777666533
Q ss_pred --CCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhccC
Q 047305 560 --NGCTPSPAVYKSLMTWSCRRRK---FSLAFSLWLQYLRDIS 597 (767)
Q Consensus 560 --~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p 597 (767)
...-|+-..-.+++..|..... -+.|...+.++++..|
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2234554444455555554443 4567777777776665
No 401
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.26 E-value=3.3 Score=35.32 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=16.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 216 INRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALAL 260 (767)
Q Consensus 216 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (767)
.+.+.....+++.+...+...+....+.++..|++.++.++..++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 333344444444443332222333344444444444333333333
No 402
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=65.67 E-value=23 Score=33.90 Aligned_cols=76 Identities=9% Similarity=-0.012 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH-HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS-LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
|...|...+....+.|.+.+...++.++.... +.+...|-. ..--|...++++.++.+|.+.++.+|.+|..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44445555544455556666666666665532 333333322 11114455677777777777777777777666543
No 403
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.28 E-value=1.2e+02 Score=33.17 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----------hHHHHHHHHHhcCC
Q 047305 480 AYKILMQLAESGNLPDI---ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV----------TYGTLINGLQRVDR 546 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------~~~~l~~~~~~~~~ 546 (767)
-...+.+|...--.|++ .+...++..|....+++..+++.+.+... ||.. .|...++---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 34455666544333433 44556677788888899999998888764 2211 22222222245678
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHH---------HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH
Q 047305 547 EEDAFRIFGQMPQNGCTPSPAVYKSLMTW---------SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
-++|+...-.+++..-+..+..|....++ |...+..+.|.+.|+++.+..|......+ ++-.+...|+.=
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN-~atLL~aaG~~F 337 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGIN-LATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcccc-HHHHHHHhhhhc
Confidence 88888888888764323223233222222 44567788899999999988776544333 333333333221
Q ss_pred HHHHHHHHh--------hhcCCCCCccchHHHHH---HHhhcCCHHHHHHHHHHHHHcC
Q 047305 618 NAIQGLLEM--------DFKLNDFQLAPYTIWLI---GLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 618 ~A~~~~~~~--------~~~~~p~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+--..+..+ ..++.-.....|.-++. +-.-.+++.+|+..-+.|.+..
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 111222221 11111111111222222 2223467778887777777665
No 404
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.96 E-value=35 Score=33.15 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNG---CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
.|.-=.+-|.+..++..|...|.+-++.. ...+...|..-..+-.-.|++-.|+.=..+++...|....+++.-+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 45556677888888888998888877642 222355565555555567888888888888888889988888888888
Q ss_pred HHhcCCHHHHHHHHHHh
Q 047305 610 FLQKGEVENAIQGLLEM 626 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~ 626 (767)
+.+..++.+|+....+.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888888887666653
No 405
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.27 E-value=25 Score=26.10 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhcCCccHHH
Q 047305 649 GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN---GFILRPRVCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~ 725 (767)
+.++.|.+..++++... ..|..++|+.+|+++++. |+..... .. ..|..|+.
T Consensus 3 ~~~~~A~~~I~kaL~~d----------------E~g~~e~Al~~Y~~gi~~l~eg~ai~~~--------~~-~~~~~w~~ 57 (79)
T cd02679 3 GYYKQAFEEISKALRAD----------------EWGDKEQALAHYRKGLRELEEGIAVPVP--------SA-GVGSQWER 57 (79)
T ss_pred hHHHHHHHHHHHHhhhh----------------hcCCHHHHHHHHHHHHHHHHHHcCCCCC--------cc-cccHHHHH
Confidence 34666777777766443 236677777777766542 3222221 11 34444888
Q ss_pred HHHHHHHHHH
Q 047305 726 AYHLLCRMKS 735 (767)
Q Consensus 726 a~~~~~~~~~ 735 (767)
|..+.++|..
T Consensus 58 ar~~~~Km~~ 67 (79)
T cd02679 58 ARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHH
Confidence 8888888874
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.94 E-value=2.7e+02 Score=31.95 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHH-H-HHH--HHHHhcCChhHHHHHHHHhhh
Q 047305 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVF-F-VLI--SGYYKVGDCEKALESFGKMKE 126 (767)
Q Consensus 66 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~-~l~--~~~~~~~~~~~A~~~~~~~~~ 126 (767)
+..=+..+....+|++|..+-+.....+....-.+- . .+. --+..++++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 555566677777888888877766553311111111 1 111 224568999999999998864
No 407
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.53 E-value=1.9e+02 Score=29.93 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=39.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047305 179 SKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEAL 258 (767)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (767)
...|+++.+...+...... +.....+...+++.....|++++|..+-.-|+...+. +..+........-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3445555555554443321 1123344555555555556666666655555544333 2222222222222344555555
Q ss_pred HHHHHHHh
Q 047305 259 ALLRSFEK 266 (767)
Q Consensus 259 ~~~~~~~~ 266 (767)
-.|+++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555543
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.31 E-value=31 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=20.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
...++..+...|++++|+..++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55677777788888888888888764
No 409
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.54 E-value=13 Score=35.25 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM 604 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 604 (767)
+.|+.++|..+|+.+.... +.++.....+.......+++-+|-++|-+++...|.+..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4455555555555554432 223333333333333444555555555555555555554443
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.26 E-value=16 Score=33.26 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=40.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 609 EFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
...+.|+.+.|.+.+.+.. ...|+....|..++...-+.|+.+.|.+.|++.++.+ |+|.
T Consensus 4 ~~~~~~D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 3455677777766666622 1346666667777777777788888888888887776 5543
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.09 E-value=2.2e+02 Score=30.34 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=16.2
Q ss_pred HHhcCChhHHHHHHHHHHhccCC-CccchHHHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISG-RDDESMKSIEEF 610 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 610 (767)
+.+.|-+..|.++.+-++...|. +|.....++..|
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 33445555555554444455554 444444444333
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.79 E-value=2.5e+02 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh
Q 047305 510 GNINGALKLFKELQLKGLRPDSV 532 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~p~~~ 532 (767)
|+..+|.+.+-.+.....-|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 45555555555555444444443
No 413
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=1.5e+02 Score=28.03 Aligned_cols=204 Identities=7% Similarity=-0.025 Sum_probs=101.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-HH
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK-VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREE-DA 550 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~A 550 (767)
+......|+++-+..+..++. +...|..--..+.. ..+..+-++.++++.....+ |...|..--......|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccch
Confidence 344556677777777665422 33333322222211 12355666777777766444 5555544333334445555 55
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh-cCCHHHH-----HHHHH
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ-KGEVENA-----IQGLL 624 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~ 624 (767)
+.+.+.|+..+ ..+-.+|..---++..-+.++.-..+..++++.+--|..+++........ .|-.+++ +....
T Consensus 133 Lef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~ 211 (318)
T KOG0530|consen 133 LEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTK 211 (318)
T ss_pred HHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHH
Confidence 67777776532 22323333222334445667888888888887776666666643222222 2222211 11122
Q ss_pred HhhhcCCCCCccchHHHHHHHhh-cC--CHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQ-DG--QVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
+ .....|.+.++|+-|...+.. .| ...+.........-.-...+|...-.+.+.|
T Consensus 212 ~-~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 212 D-KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred H-HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 2 223458888888887777764 33 2333444444443111133444444455544
No 414
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=60.79 E-value=1.7e+02 Score=28.51 Aligned_cols=65 Identities=15% Similarity=-0.042 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHH
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFS--KDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~a~~~~~~~~~ 735 (767)
..+...++.-.+.+|++.+|-.++=-.....-.||.-..+.+.+-+... .-+ |+-|.+-+.++++
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qn-Wd~A~edL~rLre 195 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQN-WDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 4566677777778888888877655443322223332233333322210 122 7777777777664
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.97 E-value=54 Score=26.75 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 515 ALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 515 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
..+-++.....++-|++......+++|.+.+++..|.++|+-+... ..+...+|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 4444555555677788888888888888888888888888777542 223333455444
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.50 E-value=18 Score=36.76 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=16.4
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
..+.+..+|-+|.-.++|.+|+..|..+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666555
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.34 E-value=16 Score=37.14 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH-------HcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLV-------ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..|.++++-.|+|..|+++++.+. ..-.+-...++..+|.+|...+++.+|++.|..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554441 111223456788999999999999999999998754
No 418
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.08 E-value=1.8e+02 Score=28.04 Aligned_cols=61 Identities=5% Similarity=-0.025 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHccCCHhHHHHH
Q 047305 165 LPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQR-GILPNKFTYTIVISGLCQINRADEAYRL 225 (767)
Q Consensus 165 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 225 (767)
.++..+...++..++..+++.+-.++++..... +..-|...|...|+.....|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344444444555555555555555555544332 3333444555555555555554433333
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.99 E-value=1.8e+02 Score=27.93 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHH---HHHhhhcCCCCCccchHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQG---LLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~p~~~~~~~~ 640 (767)
-++.....++..|.+.|++.+|+..|-. |...++... +.....+..|.....+..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----------------------~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL----------------------GTDPSAFAYVMLLEEWSTKGYPSEADLFIA 145 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT----------------------S-HHHHHHHHHHHHHHHHHTSS--HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh----------------------cCChhHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 3677778888888888888888876511 111111111 111111223444443443
Q ss_pred HHH-HHhhcCCHHHHHHHHHHHHHc
Q 047305 641 WLI-GLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 641 l~~-~~~~~g~~~~A~~~~~~~~~~ 664 (767)
.+- -|...++...|...++...+.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333 466678888888887776544
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.93 E-value=2.5e+02 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=8.2
Q ss_pred HHHHHhcCChHHHHHHH
Q 047305 175 INGLSKSGKTEVAIKML 191 (767)
Q Consensus 175 ~~~~~~~g~~~~A~~~~ 191 (767)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444556555544443
No 421
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.45 E-value=1.7e+02 Score=28.07 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047305 315 IRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR---- 390 (767)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 390 (767)
|.+++..+++.+++...-+.-+.--+........-|-.|.+.+.+....++-...+...-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544433322211112222333333455555555555555544443322233334444444432
Q ss_pred -cCCHHHHHHHH
Q 047305 391 -NGMVDDAQKLF 401 (767)
Q Consensus 391 -~g~~~~A~~~~ 401 (767)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 422
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=56.31 E-value=61 Score=30.77 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=56.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
..++=.+|...++++.|....++.+..+ |.|+.-+.--|-+|...|....|++-++..++.- |+.+....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~--P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC--PDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC--CCchHHHH
Confidence 4455567888899999999999999887 8888888888889999999999999999877754 66655443
No 423
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=1.9e+02 Score=27.67 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-------HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC-ChhhH
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIIT-------YNSLINGFCKVGNINGALKLFKELQLK---GLRP-DSVTY 534 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p-~~~~~ 534 (767)
.++.-..+.+++++|+..+.++...|...+..+ ...+...|...|++..-.++....... --+| .....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345556778899999999999998887766543 345666777777766554444332211 0011 11223
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCCH-----hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 535 GTLINGLQ-RVDREEDAFRIFGQMPQNGCTPSP-----AVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 535 ~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
..++.-+. ....++.-+.++...++-...... ..-.-++..+.+.|++.+|+......+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33333332 223344444444444331111111 111234445667777777777665555
No 424
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.20 E-value=76 Score=33.95 Aligned_cols=94 Identities=6% Similarity=-0.024 Sum_probs=57.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCc------cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQL------APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
++++-+...++..++..+++.+.. +.. -|.+. .....|.-+|......|.|.++++++.+.+ |.++-+-.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQL 432 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHH
Confidence 445556666777777777776666 321 12111 134455556666677777777777777765 55666656
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
....+....|+-++|...+.....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
Confidence 666666777777777777766643
No 425
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.07 E-value=1.2e+02 Score=28.97 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 210 ISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 210 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
|++++..+++.+++...-+.-+.--+....+....|-.|.+.+....+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 556666666666554433322111111223344444445566666655555555544
No 426
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.96 E-value=24 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
..+..++-.+...|++++|+.+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345667777888888888888844
No 427
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.37 E-value=1.1e+02 Score=24.47 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=13.7
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
+.+.|+.-+|.++.++++...+.+..
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCc
Confidence 34455555555555555554444443
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=53.90 E-value=1.7e+02 Score=26.49 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 499 YNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
.+.++..+...|+++.|-+.|.-++.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 33444444555555555555555544
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.70 E-value=1e+02 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 549 DAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
.+..+|..|...|+-. .+..|...+..+...|++++|.++|...
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888887766543 4667778888888888888888888764
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.44 E-value=2.2e+02 Score=29.25 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 047305 648 DGQVKEALNIFSVLVE 663 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~ 663 (767)
.|+|+.|+..+-++++
T Consensus 254 ~gryddAvarlYR~lE 269 (379)
T PF09670_consen 254 QGRYDDAVARLYRALE 269 (379)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4777777766666554
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.34 E-value=1.5e+02 Score=27.88 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH---cCCCCChHhHHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 047305 652 KEALNIFSVLVE---CKAIVTPPSCVKLIH-----GLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 652 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 698 (767)
++|...|+++.+ ..++|...++..++- .|...|+.++|+++-+++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 555566666531 113454444433332 34568899998888887754
No 432
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=53.32 E-value=30 Score=21.33 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.++..||.+-...+++++|..-|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566777777777777777777777654
No 433
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.05 E-value=37 Score=32.55 Aligned_cols=80 Identities=9% Similarity=0.168 Sum_probs=61.5
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHH-HHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchH
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK-SIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYT 639 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~ 639 (767)
+..|+..|...+....+.|.+.+.-.+|.++++..|.+.+.|.. ...-+...++.+.+...+.+ +. ..|++|..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCchHHH
Confidence 45677777777776677788889999999999999999998875 56778888888888777776 33 4577877665
Q ss_pred HHHH
Q 047305 640 IWLI 643 (767)
Q Consensus 640 ~l~~ 643 (767)
....
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5443
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.87 E-value=45 Score=26.88 Aligned_cols=61 Identities=13% Similarity=-0.037 Sum_probs=35.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH----cC-CCCCh-----HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE----CK-AIVTP-----PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..|..++...|+|++++.--++++. +| +..|. .+...-+.++...|+.++|...|+.+-+
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 55666777777888777766666541 11 12222 2222344567788999999998887644
No 435
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.12 E-value=1.5e+02 Score=25.24 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 135 IYNAVLNIAFRKQLFLLALAVYYEMVKLN-----CLPNIVTFSLLINGLSKSGK-TEVAIKMLDEMTQRGILPNKFTYTI 208 (767)
Q Consensus 135 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 208 (767)
..|.++.-....+++.....+++.+.... -..+...|.+++.+..+... --.+..+|+-+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666666666666666653221 02333445555555544433 2234455555555555555555555
Q ss_pred HHHHHHcc
Q 047305 209 VISGLCQI 216 (767)
Q Consensus 209 li~~~~~~ 216 (767)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 55555443
No 436
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.38 E-value=49 Score=23.17 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+++..++++.++.. .-|..-...++.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555433 23444455566777777778888777776653
No 437
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.38 E-value=71 Score=37.46 Aligned_cols=156 Identities=12% Similarity=-0.049 Sum_probs=99.6
Q ss_pred HHHhcCCHHHHHH------HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-------h-ccCCCccchHH
Q 047305 540 GLQRVDREEDAFR------IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYL-------R-DISGRDDESMK 605 (767)
Q Consensus 540 ~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~p~~~~~~~~ 605 (767)
.....|.+.+|.+ ++......-.++....|..+...+.+.|+.++|+..-.++. . ..|+....+..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556666665 55533222235567788889999999999999988765554 2 23444455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHh------hh-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCC---ChH
Q 047305 606 SIEEFLQKGEVENAIQGLLEM------DF-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK----AIV---TPP 671 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~------~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~ 671 (767)
++......++...|+..+.+. .. +..|....+...+...+...++++.|+.+.+.+.... .++ ...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666666777776666652 11 1356666666777777777799999999999986422 111 244
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
++..+++.+...|.+..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 566677777777777766655443
No 438
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.19 E-value=1.3e+02 Score=23.60 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN 163 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 163 (767)
.+..+|+|++|+.+.+.+ +.||...|-.|.. .+.|....+..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334445555555544433 2455444444332 23344444444444444443
No 439
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.99 E-value=2.4e+02 Score=26.70 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCC
Q 047305 182 GKTEVAIKMLDEMTQRGILPN---KFTYTIVISGLCQINRADEAYRLFLKMKDS---GC--SPDFVAYNALLNGFCKLRR 253 (767)
Q Consensus 182 g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 253 (767)
.++++|+.-|++..+..-... -.+...++....+.|++++..+.|.+++.- .+ .-+..+.+.+++..+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345555555555554321111 122333455566666666666666655421 11 1123345555555444444
Q ss_pred HHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC------CCCHHHHHHHHHH
Q 047305 254 VDEALALLRSFEKD-----GFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE-----KI------EPDVVLYGVMIRG 317 (767)
Q Consensus 254 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~------~~~~~~~~~l~~~ 317 (767)
.+-...+++.-++. +-..=..+-..|...|...+.+.+...+++++... |. ..-...|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 44443333332210 00000123345666777777777777777766543 10 0112456666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh----CCCCCCHH---HHHHH
Q 047305 318 LSEAGKVKDAMKLLSDMRERG-IVPDTYCYNALIKGF-----CDLGLLDQARSLQVEIWK----RDSLPNTH---TFTIL 384 (767)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~----~~~~~~~~---~~~~l 384 (767)
|....+-.....++++..... .-|.+... .+++-| .+.|++++|..-|-++.+ .|. |... -|..|
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLVL 278 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVL 278 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHHHH
Confidence 777777777777777654432 22333333 334433 456778877654444332 333 3222 24445
Q ss_pred HHHHHhcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 385 ICGMCRNGM----VDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 385 ~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
.+++.+.|- .++|. --.-.|...+.+.++.+|.. ++..+-.++++.-
T Consensus 279 ANMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 555544431 11111 11123455677788888764 4555555555443
No 440
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.53 E-value=1.3e+02 Score=23.41 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCN 709 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 709 (767)
+.++++...+.+-.|...-+|+-.|...|+-+.|.+.|+.-.. +=|.+.++-
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 4555555555455556666777778888888888887776533 345555433
No 441
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=48.34 E-value=40 Score=20.80 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.3
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.|..||.+-...++|++|++-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 477888888888899999888888764
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.05 E-value=63 Score=30.74 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=38.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc-----CCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC-----KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
...++..|.+.|++++|+++|+.+... -......+...+..++...|+.+..+.+-=+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456778888888888888888888421 1122344556666677777777776665433
No 443
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.80 E-value=4.9e+02 Score=30.00 Aligned_cols=40 Identities=5% Similarity=-0.030 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047305 386 CGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425 (767)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (767)
-.|......+-++.+++.+....-.++..-.+.++..|..
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3466777888889999998876555677777777777764
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.72 E-value=78 Score=28.65 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=26.3
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
..|++.+|..++.++...|+.++|.....++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 457777777777777777777777777777777666
No 445
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.62 E-value=90 Score=30.83 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 650 QVKEALNIFSVLVECKAIVT----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
-.++.+.++..++.. .|+ ...|..++.++...|.+++.+.+|++++..|..|-...-+.++..+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346667777766654 233 45677888888888888888888888888887776666665555554
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.33 E-value=90 Score=29.14 Aligned_cols=84 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-
Q 047305 31 KTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYY- 109 (767)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~- 109 (767)
+..+.++|-..+++..|++++++. .++..+.+.-..++.. ...+.+.+|+...+.... ......+..++..+.
T Consensus 111 ~~~Il~~L~~~~~~~lAL~y~~~~--~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 111 PDKILQALLRRGDPKLALRYLRAV--GPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHHHCCChhHHHHHHHhc--CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHH
Q ss_pred ---hcCChhHHHHH
Q 047305 110 ---KVGDCEKALES 120 (767)
Q Consensus 110 ---~~~~~~~A~~~ 120 (767)
+.+..++-+.+
T Consensus 185 ~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 185 ECARSGRLDELLSL 198 (226)
T ss_pred HhhhhhHHHHHHhC
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.30 E-value=5.5e+02 Score=30.37 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD-- 495 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 495 (767)
.+..+|...|+.-+|+..|.+.. .+...........-...-....+.+. +.-..+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~--------------Sg~ge~~aL~~lv~~~~p~~~sv~dG--------~t~s~e~t~ 982 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSAL--------------SGFGEGNALRKLVYFLLPKRFSVADG--------KTPSEELTA 982 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHh--------------hccccHHHHHHHHHHhcCCCCchhcC--------CCCCchHHH
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV----TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS 571 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 571 (767)
..-|...++.+-..+-.+.+.++...+++. +.++.. +++.+.+.....|.+-+|...+-+-.. ..-.......
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRq 1059 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHH
Q ss_pred HHHHHHhcCChhHHHH-------------HHHHHHhccCCCccchHHHHHHHH-hcCCHHHHHHHHHH
Q 047305 572 LMTWSCRRRKFSLAFS-------------LWLQYLRDISGRDDESMKSIEEFL-QKGEVENAIQGLLE 625 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~-------------~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 625 (767)
++-.+..+|+++.-.+ +++..-+..|....-++.+..++. ..+++.+|...+.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 448
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=46.33 E-value=43 Score=34.78 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH--hhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE--MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
+.+..|+..|.+.+...|.....+-+.+.++.+.+-...+.-.+.. .....+|....++..|+.++...+++.+|++.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3456667777777777777777777777777765544443333333 23345676777788888888888888888887
Q ss_pred HHHHHHc
Q 047305 658 FSVLVEC 664 (767)
Q Consensus 658 ~~~~~~~ 664 (767)
...+.-.
T Consensus 468 ~~alq~~ 474 (758)
T KOG1310|consen 468 HWALQMS 474 (758)
T ss_pred HHHHhhc
Confidence 7776544
No 449
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.88 E-value=42 Score=32.09 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=35.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
..+.|+.++|..+|+........ +...+..+.......++.-+|-++|-+++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 44778888898888888876322 334455555555555677778787777765
No 450
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.81 E-value=4.7e+02 Score=29.21 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047305 425 KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVH--DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSL 502 (767)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 502 (767)
...+.+.|...+...... ..... .......++......+...+|...++...... .+......-
T Consensus 253 ar~d~~~A~~~~~~~~~~------------~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r 318 (644)
T PRK11619 253 ARQDAENARLMIPSLVRA------------QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERR 318 (644)
T ss_pred HHhCHHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHH
Confidence 345668888888876311 11111 12233334333333333566777776654332 233334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 558 (767)
+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555558899999999988886532 2234445567888888999999999999975
No 451
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.53 E-value=1.1e+02 Score=29.71 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 512 INGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQ 591 (767)
Q Consensus 512 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (767)
..+|.++|++..+.+-. .|.+..+...--...+.+.+.+...-...-..+..+..+.|+..+|.+.+++
T Consensus 232 i~~AE~l~k~ALka~e~-----------~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGET-----------IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHhccCCCccchH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 592 YLRDISGRDDESM--KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 592 ~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
..+..|-...... +++.++.+..-+...-..+.+-+.-..|.+......-+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaA 353 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAA 353 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHH
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.25 E-value=52 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 047305 536 TLINGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~ 558 (767)
.++.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555554443
No 453
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.82 E-value=1.4e+02 Score=22.73 Aligned_cols=14 Identities=36% Similarity=0.242 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 047305 357 GLLDQARSLQVEIW 370 (767)
Q Consensus 357 ~~~~~a~~~~~~~~ 370 (767)
|+.+.|..++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.77 E-value=5.9e+02 Score=30.03 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 047305 308 VVLYGVMIRGLSEAG--KVKDAMKLLSDMRER 337 (767)
Q Consensus 308 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 337 (767)
..-...++.+|++.+ ++++|+..+.++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344567788888888 888999998888875
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.67 E-value=82 Score=26.90 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=21.4
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 047305 65 SNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVG 112 (767)
Q Consensus 65 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (767)
--..++.++...+..-.|.++++++.+.+.+.+..|....+..+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333444444444444444555555554444444444444444444443
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.53 E-value=59 Score=29.82 Aligned_cols=61 Identities=16% Similarity=0.017 Sum_probs=52.0
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA 636 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~ 636 (767)
+..+.++.+.|.++|.++++..|.....|..++....+.|+++.|.+.+.+.. +.+|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L-~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL-ELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH-cCCccccc
Confidence 34578999999999999999999999999999999999999999999998842 24566543
No 457
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.07 E-value=1.1e+02 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
|..|+..|...|.+++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88888888888888888888888765
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.81 E-value=1.6e+02 Score=26.19 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=12.9
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047305 574 TWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~ 594 (767)
.+|.+.|++++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 346666666666666666654
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.54 E-value=2.8e+02 Score=31.34 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH
Q 047305 383 ILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462 (767)
Q Consensus 383 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (767)
++|..+.+.|-++-|+.+.+.- .+- .......|+.+.|++.-+++ .+..
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~---------~tR---F~LaLe~gnle~ale~akkl-------------------dd~d 673 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDE---------RTR---FELALECGNLEVALEAAKKL-------------------DDKD 673 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCc---------chh---eeeehhcCCHHHHHHHHHhc-------------------CcHH
Confidence 3455556677777776654322 111 12335568888888777666 4677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
.|..|++....+|+.+-|...|++... |..|--.|.-.|+.++-.++.+-+..++ |..+ ...++ .
T Consensus 674 ~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~--~~qna-l 738 (1202)
T KOG0292|consen 674 VWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG--QFQNA-L 738 (1202)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH--HHHHH-H
Confidence 888888888888888888888877642 3333334566777777776666554331 2211 11111 2
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
-.|+.++=.++++..-. .| ..|.. ....|.-++|.++.++.-.
T Consensus 739 Yl~dv~ervkIl~n~g~---~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 739 YLGDVKERVKILENGGQ---LP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HhccHHHHHHHHHhcCc---cc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 24677776666655421 22 12211 2245666777777766654
No 460
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.21 E-value=2.1e+02 Score=24.39 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHhcCC-hhHHHHHHHHhhhCCCCCCHHHHHHH
Q 047305 66 NSAVISMLLKPNGFDLYWQTLDELRSGNV-----SVVSDVFFVLISGYYKVGD-CEKALESFGKMKEFDCQPDVYIYNAV 139 (767)
Q Consensus 66 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l 139 (767)
.+.++..+...+++.....+++.+..... ..+...|..++.+.+.... --.+..+|..+.+.+.+.++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666777888888888877643211 2355677788888766555 34567778888777778888888888
Q ss_pred HHHHHHc
Q 047305 140 LNIAFRK 146 (767)
Q Consensus 140 l~~~~~~ 146 (767)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8876654
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.99 E-value=85 Score=25.91 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
+++.++|+-|...++... +..|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445667777766655443 3334556666667777777777765
No 462
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=42.79 E-value=63 Score=32.48 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC------------hhHHHHHHHHHHHC
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY------------LDLAMDVFLYTLKN 699 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~ 699 (767)
-..+|+++++++.. ..+|.+|..++.++...|+ +.+|..++.++-..
T Consensus 333 l~~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc---cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 45788888888876 5677888888888876665 56777777777543
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.22 E-value=69 Score=29.00 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+..++..++..+. .|++.++..++.++...|+.++|....+++...
T Consensus 127 l~~~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 127 LEAYIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555666554 578888888888899999999998888888653
No 464
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.05 E-value=4.2e+02 Score=27.54 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 174 LINGLSKSGKTEVAIKMLDEMTQRGILPNKF--TYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKL 251 (767)
Q Consensus 174 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (767)
.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..+++.-....-..+.. ..+.+...+..
T Consensus 38 pL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHh
Confidence 3444455566543 33334444444322 11233455556777766555543221100000111 11233334455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCHHHHHHHH
Q 047305 252 RRVDEALALLRSFEKDGFVPRLGS--YSCLIDGLFRAKRYDEAYAWY 296 (767)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~ 296 (767)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 113 ~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 113 KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6653 4444555565554321 123344455666665444333
No 465
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.72 E-value=1.2e+02 Score=24.77 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 549 DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
+..+-+..+...++.|++.+....++++.+.+++..|..+|+-+-.+.+....
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 45566667777889999999999999999999999999999887655444433
No 466
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.93 E-value=1.6e+02 Score=32.39 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047305 203 KFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282 (767)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (767)
...|..-+.-+...++.. ....+.+...-.-.+...-..++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334544444444433222 44444544432333555666777777777777777777776644321 22346666777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047305 283 LFRAKRYDEAYAWYRKMFE 301 (767)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~ 301 (767)
+.+.|+......+.+.+.+
T Consensus 448 ~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HH-----------------
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777766666655553
No 467
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.54 E-value=1.7e+02 Score=24.93 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=39.4
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 85 TLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
+...+.+.|..+++. -..++..+.+.+.+-.|.++|+.+.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445555666555542 33566677777676778888888877666666666555566555555
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=3.7e+02 Score=26.48 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----Hh
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQL----KGLRPDSVTYG-TLINGLQRVDREEDAFRIFGQMPQNGCTPS----PA 567 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 567 (767)
..+.....-|++.|+-+.|++.+....+ .|.+.|...+. .+.-.|....-..+-++..+.+.+.|...+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4556667788999999999887776554 36666655333 233334444444555566666666665544 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
+|..+.. ....++.+|-.+|-+.+..+..
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHcccccc
Confidence 5555443 3457899999999888755443
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.62 E-value=1.9e+02 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047305 165 LPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQR 197 (767)
Q Consensus 165 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 197 (767)
.||...|-.|- -.+.|-.+++...+.++...
T Consensus 68 ~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 68 YPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp -GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred CccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 34444444332 23445555555555544443
No 470
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.30 E-value=95 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.030 Sum_probs=27.7
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.++++++.|...-++.+..+|.++.-+-.-+.+|.+.|-..-|++.+..
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 45555666666665555555555555555555555555555555544444
No 471
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=5.1e+02 Score=27.95 Aligned_cols=114 Identities=13% Similarity=-0.105 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCCccchHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 585 AFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 585 A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
+...+..-+..+|.++...... .-.+...+....+.-.+. +....+|+....+.+|+.++...|....+...+...-
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKR-IPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHh-hhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444445566666654433 222334555544433333 3334568888889999999999999988888888854
Q ss_pred HcCCCCChHhHHHH------HHHHHhcCChhHHHHHHHHHHHC
Q 047305 663 ECKAIVTPPSCVKL------IHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 663 ~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
..-.+.+..+..++ ++.....|+..++...+++....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~ 171 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL 171 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 43336665555555 67777888999999999988764
No 472
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.77 E-value=6.3e+02 Score=28.60 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHH
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTW-SCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.|...|.........+...+....... +.-+++.+.++.+++..+...-.+.. .|...+..-...|+...+...+..
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ 522 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRK 522 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHH
Confidence 4455555554433234444455555554 33467788888877766544333322 344444444555666666554433
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.48 E-value=2.4e+02 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (767)
.+..|.+.|.+++|.+++++.... |+......-+....+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 344577777888888877777663 344433433333333
No 474
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.95 E-value=66 Score=23.63 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.++|+.+++++.+.+ ..|++++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
Confidence 455666666664432 345667777777666653
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.76 E-value=4.7e+02 Score=26.87 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDII--TYNSLINGFC--KVGNINGALKLFKELQLK 525 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 525 (767)
+..+...+++..|.++|+.+.+. .+++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999998876 444433 4445555554 466788898888887754
No 476
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.57 E-value=2e+02 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 380 TFTILICGMCRNGMVDDAQKLFNKMEK 406 (767)
Q Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 406 (767)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888888776
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.38 E-value=3.4e+02 Score=30.72 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=75.5
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+..+|+++.|.+.-.+. +++..|..++......|+.+-|.-.+++... |..|...|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34677777777764443 5667777777777777877777656555431 555666677778877766
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
++-+.+..+ .|.... + ..-.-.|+.++=.++++.. |..| ..|+- +. ..|. -++|.++.++...
T Consensus 719 Km~~iae~r---~D~~~~--~-qnalYl~dv~ervkIl~n~---g~~~----laylt-a~--~~G~-~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR---NDATGQ--F-QNALYLGDVKERVKILENG---GQLP----LAYLT-AA--AHGL-EDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh---hhhHHH--H-HHHHHhccHHHHHHHHHhc---Cccc----HHHHH-Hh--hcCc-HHHHHHHHHhhcc
Confidence 666655433 222221 1 1223356677777776654 3222 12222 22 4665 5777777777664
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.88 E-value=2.1e+02 Score=23.71 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
++..++|+-+..+++......+..-.+.++...|+ +.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~-~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGR-YKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHc
Confidence 66888999999998887776666666677767887 9999998864
No 479
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=36.24 E-value=4.3e+02 Score=25.95 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHhhh-CCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC----ccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 551 FRIFGQMPQ-NGCTPSP-AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR----DDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 551 ~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
...++.+.+ .++.|+. .+...+..-...||++..|..++-......++. ..+.++...+-.-..+++.|++.+.
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444433 3555542 344445555567888888877765554333222 2334444444455678888888877
Q ss_pred Hhhh
Q 047305 625 EMDF 628 (767)
Q Consensus 625 ~~~~ 628 (767)
++..
T Consensus 192 rLre 195 (432)
T KOG2758|consen 192 RLRE 195 (432)
T ss_pred HHHH
Confidence 7543
No 480
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.87 E-value=2.4e+02 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
.+.+.++-..|+.++|+..|+++-
T Consensus 104 fsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 104 FSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Confidence 344556677788888888888763
No 481
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.57 E-value=5e+02 Score=26.51 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
+..-+|..+++..+...|.+......++..|...|-.+.|...+..++.+
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK 246 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK 246 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH
Confidence 34567888889999999999999999999999999999999999887655
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.16 E-value=6.9e+02 Score=28.07 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 246 NGFCKLRRVDEALALLRSFEKDGFVP---RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG 322 (767)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (767)
+.+.+.+.+++|+...+..... .+ -.......|..+...|++++|-...-.|... +..-|...+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4444555566665555443322 11 1234555566666666666666666555543 3444444444444444
Q ss_pred CH
Q 047305 323 KV 324 (767)
Q Consensus 323 ~~ 324 (767)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
No 483
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.18 E-value=1.4e+02 Score=19.61 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=18.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 319 SEAGKVKDAMKLLSDMRERGIVPDTYCYNALIK 351 (767)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 351 (767)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666665555555554443
No 484
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=4.8e+02 Score=25.91 Aligned_cols=83 Identities=13% Similarity=-0.010 Sum_probs=52.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHc---CCCCChHhHHH--HHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVEC---KAIVTPPSCVK--LIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRVCNYLLR 713 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 713 (767)
+.-+.++.++|+++++++.+. ...|+++.+.. .+.++...|+..++++.+..... .++.|+.....|.+.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 334456899999999998532 22556665554 56677789999999999988866 455554444444444
Q ss_pred H-HhhcCCccHHHHH
Q 047305 714 S-LLFSKDNKKVHAY 727 (767)
Q Consensus 714 ~-l~~~~~~~~~~a~ 727 (767)
+ +++..|+ +..++
T Consensus 164 sqYyk~~~d-~a~yY 177 (380)
T KOG2908|consen 164 SQYYKKIGD-FASYY 177 (380)
T ss_pred HHHHHHHHh-HHHHH
Confidence 4 4434454 44333
No 485
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.75 E-value=38 Score=28.02 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLING 505 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 505 (767)
..|.-.+|..+|+.|++.|.+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555667777777777776665 35555543
No 486
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.91 E-value=89 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047305 311 YGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCY 346 (767)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 346 (767)
|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 446666666666667777776666666655333333
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.96 E-value=3e+02 Score=26.13 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQL 487 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~ 487 (767)
..++..|...|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555566666666666666655
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.85 E-value=4.7e+02 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFN 402 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (767)
-++.....+...|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 355666677777777777777776653
No 489
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.87 E-value=5.4e+02 Score=25.54 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-h-----cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCH
Q 047305 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFC-K-----VGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDRE 547 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~ 547 (767)
+-++++..++++...++. |.+......|.++- . .-++.....+|+.+... .|+++ +.|.. -+..+..-.
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRA-VAla~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRA-VALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHH-HHHHHhhhH
Confidence 345678888888877764 66666655554432 2 22566677778777765 45554 34443 344445557
Q ss_pred HHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 548 EDAFRIFGQMPQNG-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 548 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
..++...+.+...+ ..--...+..-.+.+.+.|+.++|...|++++..-++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77888888877642 2222223334456688999999999999999877655444
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.85 E-value=3.5e+02 Score=31.83 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=14.5
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHhh
Q 047305 604 MKSIEEFLQKG--EVENAIQGLLEMD 627 (767)
Q Consensus 604 ~~l~~~~~~~g--~~~~A~~~~~~~~ 627 (767)
..++-+|.+++ +.++|+..+.++.
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~ 841 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELR 841 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45566666665 6666666666654
No 491
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.67 E-value=5.2e+02 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 047305 344 YCYNALIKGFCDLGLLDQAR 363 (767)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~ 363 (767)
.+|..|+.+++..|+.+...
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45777888888888877654
No 492
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.63 E-value=2.2e+02 Score=21.02 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=6.6
Q ss_pred cCChhHHHHHHHHHH
Q 047305 683 RGYLDLAMDVFLYTL 697 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~ 697 (767)
.|++++|+.+|.+++
T Consensus 19 ~g~y~eAl~~Y~~ai 33 (77)
T cd02683 19 EGRFQEALVCYQEGI 33 (77)
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444443
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=5.1e+02 Score=25.05 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=68.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQL----KGLRPDSVT-YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSP--- 566 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 566 (767)
....|..+..-|++.++.+.+.++..+..+ .|.+.|... -..+.-.|....-.++-++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 346677888899999998888877666544 455555432 222333444444567778888888887765542
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH
Q 047305 567 -AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM 604 (767)
Q Consensus 567 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 604 (767)
.+|..+. +....++.+|-.++-+.+..+.......+
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY 230 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISY 230 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccH
Confidence 3444333 23456889999998888866655544333
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.43 E-value=4.2e+02 Score=26.00 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRE 336 (767)
Q Consensus 279 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (767)
++..+.+.++..+....+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444445555554443 233344455666677777777777776654
No 495
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.19 E-value=8.8e+02 Score=27.77 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 385 ICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 385 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
...+...|+.+....+-.-+.. |..++.-+.+.+.+++|++++..-
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666666555444432 445666677788888888777543
No 496
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=29.64 E-value=8.8e+02 Score=27.55 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=41.0
Q ss_pred hHHHHHHHhh-cCCHHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047305 638 YTIWLIGLCQ-DGQVKEALNIFSVLVECKAIVTPP-SCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 638 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
+-..+..++. .++.+.|+.+++.+...+ .-+.. -|...++.-...|+...|+.+++++...-..|
T Consensus 464 ~q~wA~~E~sl~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 464 LQLWAQVEASLLKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HHHHHHHHHHHhhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 4444555444 367788888888776665 33333 56666666666678888888777776554333
No 497
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.99 E-value=4.8e+02 Score=24.28 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHhhHH--HHHHHHHhcCChhHHHHHHHHHH-hccCCCc
Q 047305 527 LRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP---SPAVYK--SLMTWSCRRRKFSLAFSLWLQYL-RDISGRD 600 (767)
Q Consensus 527 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~ 600 (767)
+.+...-++.|+--|.-...+.+|-..|..-. |+.+ +...+. .-+.-....|+.++|++.....- +....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 35556667777666655555666666665433 3443 333332 33444677888888888766554 2222333
Q ss_pred cchHHH----HHHHHhcCCHHHHHHHHHH
Q 047305 601 DESMKS----IEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 601 ~~~~~l----~~~~~~~g~~~~A~~~~~~ 625 (767)
..+..+ .--..+.|..++|++....
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333322 2223456667777666665
No 498
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.56 E-value=3.1e+02 Score=26.76 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------hcCCHHHH
Q 047305 188 IKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC----------KLRRVDEA 257 (767)
Q Consensus 188 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 257 (767)
.++++.+.+.++.|.-.++..+.-.+.+.=...+++.+++.+... ..-|..|+..|| -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777777788888777777777777777777888888877642 223555555554 25777777
Q ss_pred HHHHHH
Q 047305 258 LALLRS 263 (767)
Q Consensus 258 ~~~~~~ 263 (767)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 499
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=28.08 E-value=3.2e+02 Score=22.00 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 047305 505 GFCKVGNINGALKLFKELQLK 525 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~ 525 (767)
.+...|++-+|+++.++++..
T Consensus 5 ~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 345566666666666666543
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=28.06 E-value=3.6e+02 Score=22.59 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047305 71 SMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFL 150 (767)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 150 (767)
.+-.|..-+..-...++..++.|-.....++..++-.+...|+++.|+++.+.+.+.| .+.+..|+.=..+++ .+
T Consensus 21 K~~~Kr~lLP~Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~-l~~P~~f~R~~~t~v----ae 95 (132)
T PF05944_consen 21 KAEYKRELLPKYLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHG-LPMPDRFKRTLPTFV----AE 95 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcC-CCccccccCcchHHH----HH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 047305 151 LALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVA 187 (767)
Q Consensus 151 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 187 (767)
+.........+.|.+.+..........-.....++++
T Consensus 96 ev~~~a~~~~~~g~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 96 EVADWALRAAKAGQSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHccCCCCCCC
Done!