Query 047305
Match_columns 767
No_of_seqs 645 out of 4809
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 17:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-40 1.3E-44 363.6 39.3 522 144-716 64-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.6E-40 3E-44 360.7 39.7 505 76-645 66-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-29 3E-33 256.5 45.6 360 282-698 8-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-29 3E-33 256.5 44.1 366 351-743 7-373 (388)
5 4g26_A Pentatricopeptide repea 100.0 6E-28 2.1E-32 252.8 24.1 204 82-285 9-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 9.6E-26 3.3E-30 243.6 41.5 464 203-710 6-487 (514)
7 4g26_A Pentatricopeptide repea 100.0 1.2E-27 4E-32 250.7 24.9 186 170-355 28-222 (501)
8 2gw1_A Mitochondrial precursor 99.9 8.8E-25 3E-29 236.1 39.0 460 167-676 5-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.6E-24 8.8E-29 233.8 33.3 265 427-707 216-497 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.2E-23 1.5E-27 218.6 38.5 366 292-705 11-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.3E-24 1.5E-28 232.0 31.5 427 275-736 27-491 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 5E-23 1.7E-27 218.1 38.2 364 255-665 9-411 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 7E-21 2.4E-25 194.8 38.1 323 343-710 3-344 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-20 3.7E-25 193.4 38.7 333 307-684 2-354 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 2.3E-17 7.9E-22 182.2 66.6 419 170-659 987-1440(1630)
16 1xi4_A Clathrin heavy chain; a 99.9 5.9E-18 2E-22 186.8 60.4 178 43-228 525-750 (1630)
17 2xm6_A Protein corresponding t 99.9 7.9E-18 2.7E-22 179.4 52.0 352 307-700 38-433 (490)
18 2xm6_A Protein corresponding t 99.9 3.1E-18 1E-22 182.6 47.2 381 273-697 39-465 (490)
19 3hym_B Cell division cycle pro 99.9 3.4E-20 1.1E-24 187.3 30.1 290 412-721 21-320 (330)
20 3hym_B Cell division cycle pro 99.9 4.1E-20 1.4E-24 186.7 30.3 291 377-687 21-322 (330)
21 2ooe_A Cleavage stimulation fa 99.9 1.9E-17 6.6E-22 178.3 46.3 408 307-736 12-492 (530)
22 1fch_A Peroxisomal targeting s 99.9 4.3E-20 1.5E-24 189.7 23.3 263 416-697 67-357 (368)
23 2ooe_A Cleavage stimulation fa 99.8 5.2E-17 1.8E-21 175.0 45.3 436 226-700 2-493 (530)
24 4eqf_A PEX5-related protein; a 99.8 5.2E-20 1.8E-24 188.7 20.6 263 460-732 64-352 (365)
25 1fch_A Peroxisomal targeting s 99.8 3.4E-19 1.2E-23 182.9 24.3 291 423-733 35-356 (368)
26 4g1t_A Interferon-induced prot 99.8 7.7E-18 2.6E-22 179.2 34.8 390 238-673 51-467 (472)
27 4eqf_A PEX5-related protein; a 99.8 5E-19 1.7E-23 181.4 22.1 265 412-695 64-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.8 1.3E-17 4.5E-22 163.1 30.7 262 421-710 7-273 (291)
29 1b89_A Protein (clathrin heavy 99.8 9.8E-19 3.4E-23 173.4 21.9 371 285-721 15-403 (449)
30 3cv0_A Peroxisome targeting si 99.8 3.2E-18 1.1E-22 172.4 25.5 266 459-733 19-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 4.8E-18 1.6E-22 166.2 25.6 275 386-693 7-288 (291)
32 3cv0_A Peroxisome targeting si 99.8 2E-18 6.7E-23 174.0 23.6 266 414-698 22-314 (327)
33 4g1t_A Interferon-induced prot 99.8 2.1E-17 7.3E-22 175.8 32.5 382 273-700 51-460 (472)
34 2pl2_A Hypothetical conserved 99.8 2E-17 6.8E-22 154.6 20.3 196 530-732 4-210 (217)
35 1b89_A Protein (clathrin heavy 99.8 2.9E-17 1E-21 162.9 22.3 307 320-687 15-329 (449)
36 2pl2_A Hypothetical conserved 99.8 1.8E-17 6E-22 154.9 19.2 199 494-697 3-212 (217)
37 3uq3_A Heat shock protein STI1 99.8 4.7E-17 1.6E-21 157.5 23.0 227 460-699 4-236 (258)
38 2h6f_A Protein farnesyltransfe 99.7 1.5E-16 5.3E-21 160.6 23.3 251 458-716 94-364 (382)
39 3u4t_A TPR repeat-containing p 99.7 2.6E-16 9E-21 153.6 23.5 246 462-712 4-261 (272)
40 2h6f_A Protein farnesyltransfe 99.7 3.4E-16 1.1E-20 158.1 22.6 251 413-683 97-366 (382)
41 3uq3_A Heat shock protein STI1 99.7 9.9E-16 3.4E-20 148.1 23.1 225 496-736 5-236 (258)
42 3u4t_A TPR repeat-containing p 99.7 2E-15 6.9E-20 147.2 25.5 242 497-745 4-257 (272)
43 2q7f_A YRRB protein; TPR, prot 99.7 5.1E-16 1.7E-20 148.6 18.5 214 495-714 22-235 (243)
44 1ouv_A Conserved hypothetical 99.7 2.1E-14 7.1E-19 140.0 30.0 225 459-700 4-252 (273)
45 3e4b_A ALGK; tetratricopeptide 99.7 2.9E-15 9.9E-20 156.7 25.0 218 498-735 178-420 (452)
46 2ho1_A Type 4 fimbrial biogene 99.7 3.3E-15 1.1E-19 143.9 23.4 206 497-708 38-245 (252)
47 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-15 3.6E-20 160.0 20.9 352 314-738 9-389 (452)
48 2vq2_A PILW, putative fimbrial 99.7 5E-15 1.7E-19 139.7 22.6 200 495-698 7-210 (225)
49 2vq2_A PILW, putative fimbrial 99.7 8.7E-15 3E-19 138.0 23.9 199 532-735 9-210 (225)
50 3spa_A Mtrpol, DNA-directed RN 99.7 2.9E-16 9.8E-21 168.3 13.9 152 131-287 125-286 (1134)
51 3vtx_A MAMA; tetratricopeptide 99.7 4.6E-15 1.6E-19 134.8 20.0 167 530-699 4-170 (184)
52 2ho1_A Type 4 fimbrial biogene 99.7 8.4E-15 2.9E-19 141.0 22.5 210 531-747 37-247 (252)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.9E-15 1.3E-19 145.5 20.2 219 475-698 19-243 (275)
54 2q7f_A YRRB protein; TPR, prot 99.7 2.6E-15 8.9E-20 143.6 18.4 218 459-681 21-238 (243)
55 3spa_A Mtrpol, DNA-directed RN 99.7 3.4E-16 1.2E-20 167.7 12.4 151 97-252 126-286 (1134)
56 4abn_A Tetratricopeptide repea 99.6 8.9E-15 3E-19 154.0 20.3 213 477-695 84-317 (474)
57 1ouv_A Conserved hypothetical 99.6 2.7E-13 9.1E-18 132.1 29.0 224 412-665 5-252 (273)
58 3sf4_A G-protein-signaling mod 99.6 1.6E-14 5.5E-19 150.2 20.6 278 376-662 7-334 (406)
59 4a1s_A PINS, partner of inscut 99.6 6E-15 2.1E-19 153.7 16.9 277 414-700 49-373 (411)
60 3sf4_A G-protein-signaling mod 99.6 1.4E-14 4.8E-19 150.6 19.2 279 411-699 7-336 (406)
61 3vtx_A MAMA; tetratricopeptide 99.6 4.4E-14 1.5E-18 128.3 20.0 167 564-736 3-170 (184)
62 4a1s_A PINS, partner of inscut 99.6 2.3E-14 7.9E-19 149.2 18.9 272 460-736 47-372 (411)
63 3ro2_A PINS homolog, G-protein 99.6 3.6E-14 1.2E-18 143.3 19.7 275 381-699 8-332 (338)
64 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.2E-14 3.1E-18 135.7 21.8 244 357-622 19-268 (275)
65 3ulq_A Response regulator aspa 99.6 7.7E-14 2.6E-18 143.5 21.5 230 467-698 109-367 (383)
66 4abn_A Tetratricopeptide repea 99.6 2.6E-14 8.9E-19 150.5 17.7 214 511-732 83-317 (474)
67 4e6h_A MRNA 3'-END-processing 99.6 2.4E-11 8.1E-16 131.0 40.0 442 185-665 49-571 (679)
68 4e6h_A MRNA 3'-END-processing 99.6 5.9E-11 2E-15 127.9 42.4 223 513-742 326-574 (679)
69 2ond_A Cleavage stimulation fa 99.6 9.6E-13 3.3E-17 130.4 26.7 217 478-699 33-270 (308)
70 2ond_A Cleavage stimulation fa 99.6 1.3E-12 4.3E-17 129.5 27.5 219 513-736 33-270 (308)
71 4i17_A Hypothetical protein; T 99.6 1.1E-13 3.7E-18 130.7 18.5 206 495-712 6-220 (228)
72 4gyw_A UDP-N-acetylglucosamine 99.6 7.3E-14 2.5E-18 152.5 19.1 164 531-698 9-173 (723)
73 3ro2_A PINS homolog, G-protein 99.6 1.3E-13 4.6E-18 139.0 19.8 271 462-736 6-332 (338)
74 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-13 3.8E-18 151.1 18.1 165 564-734 7-172 (723)
75 3ulq_A Response regulator aspa 99.5 1.2E-12 4E-17 134.6 24.0 236 419-664 109-368 (383)
76 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.4E-18 135.3 17.9 243 455-698 21-306 (311)
77 4i17_A Hypothetical protein; T 99.5 6.5E-13 2.2E-17 125.3 19.5 212 458-680 4-224 (228)
78 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.4E-17 118.7 18.9 165 532-699 9-173 (186)
79 4ga2_A E3 SUMO-protein ligase 99.5 1.1E-13 3.7E-18 120.2 9.7 146 572-721 3-149 (150)
80 3q15_A PSP28, response regulat 99.5 5.1E-12 1.7E-16 129.5 23.8 233 464-698 104-364 (378)
81 3nf1_A KLC 1, kinesin light ch 99.5 2.8E-13 9.7E-18 134.9 12.6 237 495-735 26-306 (311)
82 3q15_A PSP28, response regulat 99.4 1.5E-11 5E-16 126.0 24.6 237 418-664 106-365 (378)
83 3as5_A MAMA; tetratricopeptide 99.4 5.7E-12 2E-16 114.3 17.7 165 566-736 8-173 (186)
84 1hz4_A MALT regulatory protein 99.4 7.9E-11 2.7E-15 120.5 26.6 272 463-735 16-321 (373)
85 4ga2_A E3 SUMO-protein ligase 99.4 6.9E-13 2.4E-17 115.0 9.4 146 537-685 3-149 (150)
86 1hz4_A MALT regulatory protein 99.4 2.1E-10 7E-15 117.4 28.4 276 383-698 19-321 (373)
87 3edt_B KLC 2, kinesin light ch 99.4 2.1E-12 7.2E-17 126.4 12.8 225 473-698 13-280 (283)
88 3qky_A Outer membrane assembly 99.4 1.7E-11 5.8E-16 118.3 18.6 190 495-707 14-230 (261)
89 3urz_A Uncharacterized protein 99.4 6.5E-12 2.2E-16 116.0 15.0 135 570-709 58-194 (208)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 3.7E-11 1.3E-15 112.7 20.1 186 496-700 4-214 (225)
91 3qky_A Outer membrane assembly 99.4 2E-11 6.8E-16 117.8 17.9 176 565-747 14-233 (261)
92 2pzi_A Probable serine/threoni 99.3 8.4E-12 2.9E-16 137.5 16.4 148 533-684 435-582 (681)
93 3edt_B KLC 2, kinesin light ch 99.3 1.6E-11 5.4E-16 120.2 14.3 227 507-735 12-280 (283)
94 2pzi_A Probable serine/threoni 99.3 7.9E-12 2.7E-16 137.7 13.4 185 472-661 402-595 (681)
95 1qqe_A Vesicular transport pro 99.3 6.3E-11 2.2E-15 116.1 18.3 191 505-697 46-267 (292)
96 3urz_A Uncharacterized protein 99.3 4.5E-11 1.5E-15 110.4 16.0 136 536-677 59-197 (208)
97 1qqe_A Vesicular transport pro 99.3 4.6E-11 1.6E-15 117.1 16.8 229 479-734 3-267 (292)
98 3gyz_A Chaperone protein IPGC; 99.3 3E-12 1E-16 110.0 6.4 130 566-706 9-138 (151)
99 3dra_A Protein farnesyltransfe 99.3 1.4E-09 4.8E-14 104.9 25.1 224 471-698 43-286 (306)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.3E-10 7.7E-15 107.2 18.9 184 531-736 4-213 (225)
101 2fo7_A Synthetic consensus TPR 99.3 9.8E-11 3.4E-15 99.6 15.1 131 568-700 3-133 (136)
102 3qou_A Protein YBBN; thioredox 99.3 5.3E-11 1.8E-15 116.1 14.8 131 567-699 118-248 (287)
103 2r5s_A Uncharacterized protein 99.3 4.8E-11 1.6E-15 106.9 12.8 161 534-697 9-171 (176)
104 3qou_A Protein YBBN; thioredox 99.2 1E-10 3.5E-15 114.0 15.5 168 528-698 114-283 (287)
105 2r5s_A Uncharacterized protein 99.2 5.6E-11 1.9E-15 106.5 12.5 161 568-735 8-172 (176)
106 3dra_A Protein farnesyltransfe 99.2 1.7E-09 5.7E-14 104.4 23.4 233 427-677 47-300 (306)
107 2vsy_A XCC0866; transferase, g 99.2 7.5E-11 2.5E-15 128.0 15.7 152 545-699 3-157 (568)
108 4gco_A Protein STI-1; structur 99.2 1.1E-10 3.7E-15 97.4 12.6 108 568-677 15-122 (126)
109 3mv2_B Coatomer subunit epsilo 99.2 2.3E-09 7.9E-14 102.0 22.6 182 480-670 85-287 (310)
110 4gco_A Protein STI-1; structur 99.2 8.5E-11 2.9E-15 98.0 11.0 117 593-713 6-122 (126)
111 3rjv_A Putative SEL1 repeat pr 99.2 8E-10 2.7E-14 102.2 18.0 174 514-699 4-197 (212)
112 3mv2_B Coatomer subunit epsilo 99.2 1.1E-08 3.7E-13 97.4 25.1 187 397-602 85-289 (310)
113 2vgx_A Chaperone SYCD; alterna 99.2 5.9E-11 2E-15 102.4 8.2 112 587-700 8-119 (148)
114 2vsy_A XCC0866; transferase, g 99.1 3.7E-10 1.3E-14 122.5 15.3 153 579-737 2-158 (568)
115 3rjv_A Putative SEL1 repeat pr 99.1 1.8E-09 6.2E-14 99.8 17.8 175 479-665 4-198 (212)
116 2fo7_A Synthetic consensus TPR 99.1 1.2E-09 4.1E-14 92.7 15.2 131 533-665 3-133 (136)
117 3gyz_A Chaperone protein IPGC; 99.1 1.4E-10 4.7E-15 99.7 8.6 100 565-665 35-134 (151)
118 2c2l_A CHIP, carboxy terminus 99.1 5E-10 1.7E-14 108.6 13.1 195 531-736 4-199 (281)
119 2e2e_A Formate-dependent nitri 99.1 4.7E-10 1.6E-14 100.6 11.7 132 577-712 21-155 (177)
120 2c2l_A CHIP, carboxy terminus 99.1 5.3E-10 1.8E-14 108.5 12.3 195 495-698 3-198 (281)
121 4f3v_A ESX-1 secretion system 99.1 1.5E-09 5E-14 101.9 14.6 193 508-704 18-240 (282)
122 2ifu_A Gamma-SNAP; membrane fu 99.1 1.5E-09 5.1E-14 107.1 14.8 198 473-697 3-222 (307)
123 1a17_A Serine/threonine protei 99.1 2E-09 7E-14 95.2 14.2 129 567-697 14-144 (166)
124 2xcb_A PCRH, regulatory protei 99.1 3E-10 1E-14 97.4 8.4 110 588-699 6-115 (142)
125 2vgx_A Chaperone SYCD; alterna 99.1 3.6E-10 1.2E-14 97.4 8.9 117 553-672 9-125 (148)
126 2uy1_A Cleavage stimulation fa 99.1 8.9E-08 3E-12 100.3 28.7 101 219-337 11-118 (493)
127 3u3w_A Transcriptional activat 99.1 1.4E-08 4.8E-13 99.4 20.8 162 537-698 81-265 (293)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.9E-09 2E-13 96.7 16.5 88 534-625 9-96 (213)
129 2lni_A Stress-induced-phosphop 99.0 3.1E-09 1.1E-13 89.9 12.8 119 564-684 14-132 (133)
130 3q7a_A Farnesyltransferase alp 99.0 8.5E-08 2.9E-12 93.3 24.3 233 463-699 56-331 (349)
131 2xcb_A PCRH, regulatory protei 99.0 1.2E-09 4.1E-14 93.6 10.2 118 553-674 6-124 (142)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.2E-08 4E-13 94.7 17.6 144 498-665 8-151 (213)
133 2vyi_A SGTA protein; chaperone 99.0 3.5E-09 1.2E-13 89.1 12.8 120 565-686 11-130 (131)
134 2ifu_A Gamma-SNAP; membrane fu 99.0 6.9E-09 2.3E-13 102.3 16.3 120 569-692 119-254 (307)
135 2uy1_A Cleavage stimulation fa 99.0 3.7E-07 1.3E-11 95.6 30.0 104 251-372 7-118 (493)
136 1p5q_A FKBP52, FK506-binding p 99.0 3.8E-10 1.3E-14 112.6 6.7 157 545-726 127-283 (336)
137 2qfc_A PLCR protein; TPR, HTH, 99.0 1.4E-08 4.8E-13 99.5 17.8 164 535-698 79-265 (293)
138 1p5q_A FKBP52, FK506-binding p 99.0 4.3E-09 1.5E-13 105.0 14.1 164 510-697 127-292 (336)
139 4f3v_A ESX-1 secretion system 99.0 5.4E-09 1.9E-13 98.1 13.6 188 543-736 18-237 (282)
140 3dss_A Geranylgeranyl transfer 99.0 9.5E-08 3.2E-12 92.6 22.0 183 547-736 90-304 (331)
141 4gcn_A Protein STI-1; structur 98.9 7.5E-09 2.6E-13 86.3 12.0 57 569-625 11-67 (127)
142 1na0_A Designed protein CTPR3; 98.9 1.3E-08 4.6E-13 84.7 13.5 116 566-683 9-124 (125)
143 3u3w_A Transcriptional activat 98.9 2.4E-07 8.3E-12 90.5 24.4 163 572-735 81-265 (293)
144 3q7a_A Farnesyltransferase alp 98.9 1.2E-07 4.1E-12 92.2 21.4 225 506-735 64-330 (349)
145 3upv_A Heat shock protein STI1 98.9 7.6E-09 2.6E-13 86.5 11.2 96 568-664 6-101 (126)
146 3upv_A Heat shock protein STI1 98.9 8.6E-09 2.9E-13 86.1 11.4 99 599-699 3-101 (126)
147 2e2e_A Formate-dependent nitri 98.9 6.1E-09 2.1E-13 93.2 10.6 126 542-670 21-149 (177)
148 4gcn_A Protein STI-1; structur 98.9 1.1E-08 3.8E-13 85.3 11.2 105 601-710 9-121 (127)
149 2fbn_A 70 kDa peptidylprolyl i 98.9 1.2E-08 4.2E-13 93.2 12.4 123 566-690 38-176 (198)
150 3sz7_A HSC70 cochaperone (SGT) 98.9 1.1E-08 3.9E-13 90.1 11.7 107 565-673 10-116 (164)
151 1elw_A TPR1-domain of HOP; HOP 98.9 2.6E-08 8.7E-13 81.9 13.0 108 567-676 5-112 (118)
152 3dss_A Geranylgeranyl transfer 98.9 6E-07 2.1E-11 87.0 24.3 223 473-700 41-305 (331)
153 2fbn_A 70 kDa peptidylprolyl i 98.9 1.4E-09 4.8E-14 99.5 5.7 155 576-735 14-185 (198)
154 3gw4_A Uncharacterized protein 98.9 1E-08 3.5E-13 94.2 11.3 155 544-699 5-176 (203)
155 2qfc_A PLCR protein; TPR, HTH, 98.9 1.2E-07 3.9E-12 92.9 19.1 165 568-735 77-265 (293)
156 1a17_A Serine/threonine protei 98.9 3.6E-08 1.2E-12 87.1 13.9 128 533-662 15-144 (166)
157 3q49_B STIP1 homology and U bo 98.8 1.8E-08 6.1E-13 85.7 11.2 99 565-664 8-106 (137)
158 2lni_A Stress-induced-phosphop 98.8 2.1E-08 7.3E-13 84.6 11.4 111 596-710 12-122 (133)
159 2kck_A TPR repeat; tetratricop 98.8 3.5E-08 1.2E-12 80.2 11.7 103 596-700 2-107 (112)
160 1na0_A Designed protein CTPR3; 98.8 5.1E-08 1.7E-12 81.0 12.6 107 600-710 9-115 (125)
161 1hxi_A PEX5, peroxisome target 98.8 2.1E-08 7.1E-13 82.7 9.6 94 603-698 20-113 (121)
162 1hxi_A PEX5, peroxisome target 98.8 1.7E-08 6E-13 83.2 9.0 97 568-665 19-115 (121)
163 3sz7_A HSC70 cochaperone (SGT) 98.8 6.4E-08 2.2E-12 85.2 13.2 107 597-707 8-114 (164)
164 2vyi_A SGTA protein; chaperone 98.8 3.2E-08 1.1E-12 83.1 10.7 111 596-710 8-118 (131)
165 3q49_B STIP1 homology and U bo 98.8 3.9E-08 1.3E-12 83.5 10.7 104 595-700 4-107 (137)
166 2xev_A YBGF; tetratricopeptide 98.8 1E-07 3.4E-12 79.9 13.1 94 604-699 6-105 (129)
167 2dba_A Smooth muscle cell asso 98.8 7.8E-08 2.7E-12 82.9 12.7 101 565-698 27-127 (148)
168 2xev_A YBGF; tetratricopeptide 98.8 1.4E-07 4.7E-12 79.1 13.6 107 569-677 5-117 (129)
169 1elw_A TPR1-domain of HOP; HOP 98.7 1.2E-07 4E-12 77.9 12.5 108 601-712 5-112 (118)
170 3rkv_A Putative peptidylprolyl 98.7 4E-08 1.4E-12 86.3 10.0 119 566-712 11-138 (162)
171 1wao_1 Serine/threonine protei 98.7 3.9E-08 1.3E-12 103.0 11.6 118 575-694 15-134 (477)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.9E-09 2E-13 108.8 5.0 145 566-734 268-413 (457)
173 3gw4_A Uncharacterized protein 98.7 9.3E-08 3.2E-12 87.7 12.4 158 577-735 3-175 (203)
174 2dba_A Smooth muscle cell asso 98.7 1.6E-07 5.3E-12 81.0 13.0 106 631-743 24-133 (148)
175 3k9i_A BH0479 protein; putativ 98.7 1.5E-08 5.2E-13 83.2 6.0 86 579-665 3-91 (117)
176 2hr2_A Hypothetical protein; a 98.7 3.5E-08 1.2E-12 83.2 8.0 109 567-699 12-131 (159)
177 1elr_A TPR2A-domain of HOP; HO 98.7 7.3E-08 2.5E-12 80.9 10.2 96 568-664 6-108 (131)
178 2kck_A TPR repeat; tetratricop 98.7 2.9E-07 9.8E-12 74.6 13.3 101 631-736 2-106 (112)
179 3rkv_A Putative peptidylprolyl 98.7 2.7E-08 9.4E-13 87.4 7.4 100 638-743 14-131 (162)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 9.6E-08 3.3E-12 99.6 12.4 141 511-654 249-404 (457)
181 1elr_A TPR2A-domain of HOP; HO 98.7 1.2E-07 4.2E-12 79.5 10.3 107 600-710 4-117 (131)
182 1ihg_A Cyclophilin 40; ppiase 98.6 1E-07 3.5E-12 96.0 11.0 136 568-726 225-360 (370)
183 1dce_A Protein (RAB geranylger 98.6 9.2E-07 3.2E-11 94.2 18.0 173 512-688 45-244 (567)
184 3ro3_A PINS homolog, G-protein 98.6 2E-07 7E-12 81.7 10.9 130 569-698 12-157 (164)
185 2if4_A ATFKBP42; FKBP-like, al 98.6 4.2E-08 1.5E-12 97.8 6.7 149 567-736 180-328 (338)
186 2hr2_A Hypothetical protein; a 98.6 3.5E-07 1.2E-11 77.1 10.9 93 640-735 16-130 (159)
187 1dce_A Protein (RAB geranylger 98.6 1.1E-06 3.9E-11 93.5 17.0 170 546-721 44-241 (567)
188 3k9i_A BH0479 protein; putativ 98.6 5.2E-08 1.8E-12 79.9 5.2 93 612-707 2-96 (117)
189 4b4t_Q 26S proteasome regulato 98.5 1.9E-06 6.6E-11 89.8 17.4 165 534-698 58-244 (434)
190 1wao_1 Serine/threonine protei 98.5 4.7E-07 1.6E-11 94.8 11.8 120 503-624 13-134 (477)
191 1zu2_A Mitochondrial import re 98.5 1.5E-07 5.1E-12 79.2 5.7 110 577-714 13-133 (158)
192 1ihg_A Cyclophilin 40; ppiase 98.4 6.6E-07 2.3E-11 90.0 10.8 100 638-743 226-341 (370)
193 2if4_A ATFKBP42; FKBP-like, al 98.4 3.5E-07 1.2E-11 91.1 8.6 147 498-664 181-328 (338)
194 4b4t_Q 26S proteasome regulato 98.4 7.4E-06 2.5E-10 85.3 18.4 166 568-734 57-243 (434)
195 1zu2_A Mitochondrial import re 98.4 4.4E-07 1.5E-11 76.3 7.0 98 646-750 13-132 (158)
196 3ro3_A PINS homolog, G-protein 98.4 1E-06 3.5E-11 77.0 8.5 139 497-664 10-158 (164)
197 2kat_A Uncharacterized protein 98.3 1.3E-06 4.6E-11 71.1 7.9 80 584-664 3-82 (115)
198 3ma5_A Tetratricopeptide repea 98.3 1.6E-06 5.4E-11 68.4 8.0 68 631-699 3-70 (100)
199 3n71_A Histone lysine methyltr 98.3 5E-06 1.7E-10 86.1 13.3 131 541-699 319-464 (490)
200 3ly7_A Transcriptional activat 98.3 8.5E-06 2.9E-10 78.9 14.0 145 562-710 190-348 (372)
201 3n71_A Histone lysine methyltr 98.3 4.3E-06 1.5E-10 86.6 12.1 104 631-736 347-464 (490)
202 2l6j_A TPR repeat-containing p 98.2 7.2E-07 2.5E-11 72.1 3.9 88 605-694 9-102 (111)
203 2l6j_A TPR repeat-containing p 98.2 7E-07 2.4E-11 72.2 3.1 94 566-660 4-103 (111)
204 1na3_A Designed protein CTPR2; 98.2 5.8E-06 2E-10 63.8 7.9 62 636-698 10-71 (91)
205 1klx_A Cysteine rich protein B 98.1 2.3E-05 7.7E-10 66.0 11.8 110 581-700 10-127 (138)
206 1na3_A Designed protein CTPR2; 98.1 7.7E-06 2.6E-10 63.0 8.1 84 599-684 8-91 (91)
207 2kat_A Uncharacterized protein 98.1 1.3E-05 4.4E-10 65.1 9.4 79 619-699 4-82 (115)
208 3ma5_A Tetratricopeptide repea 98.0 1.2E-05 4.1E-10 63.3 7.8 69 595-664 2-70 (100)
209 1klx_A Cysteine rich protein B 98.0 5.5E-05 1.9E-09 63.6 11.5 111 545-665 9-127 (138)
210 3bee_A Putative YFRE protein; 98.0 3.8E-05 1.3E-09 58.8 8.8 69 631-700 2-73 (93)
211 3qww_A SET and MYND domain-con 97.8 6.9E-05 2.4E-09 76.2 11.1 78 632-710 337-425 (433)
212 2kc7_A BFR218_protein; tetratr 97.7 2.3E-05 7.9E-10 61.5 4.4 50 576-625 10-60 (99)
213 2kc7_A BFR218_protein; tetratr 97.7 9.1E-05 3.1E-09 58.0 7.8 61 639-700 4-65 (99)
214 3u64_A Protein TP_0956; tetrat 97.6 0.0011 3.8E-08 61.4 14.6 130 594-734 146-296 (301)
215 3qww_A SET and MYND domain-con 97.6 0.00015 5.2E-09 73.7 8.4 94 543-663 310-410 (433)
216 3qwp_A SET and MYND domain-con 97.6 0.00027 9.1E-09 72.1 10.3 76 635-711 329-415 (429)
217 3qwp_A SET and MYND domain-con 97.5 0.00052 1.8E-08 70.0 12.0 108 538-673 294-413 (429)
218 3bee_A Putative YFRE protein; 97.5 0.00039 1.3E-08 53.1 8.2 68 596-665 2-73 (93)
219 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00074 2.5E-08 53.1 9.2 72 637-710 7-84 (104)
220 1pc2_A Mitochondria fission pr 97.4 0.00078 2.7E-08 55.9 9.4 79 631-711 28-110 (152)
221 1pc2_A Mitochondria fission pr 97.4 0.00053 1.8E-08 56.9 8.3 89 581-670 13-105 (152)
222 3ly7_A Transcriptional activat 96.9 0.012 4.2E-07 57.1 13.5 153 591-751 185-352 (372)
223 4h7y_A Dual specificity protei 96.9 0.014 4.9E-07 47.4 11.3 111 563-702 10-126 (161)
224 3u64_A Protein TP_0956; tetrat 96.7 0.0078 2.7E-07 55.8 9.9 82 582-665 179-270 (301)
225 1nzn_A CGI-135 protein, fissio 96.7 0.0084 2.9E-07 47.7 8.6 80 633-714 33-116 (126)
226 2v5f_A Prolyl 4-hydroxylase su 96.7 0.01 3.5E-07 46.4 9.2 75 533-607 7-87 (104)
227 3mkq_A Coatomer beta'-subunit; 96.6 0.062 2.1E-06 60.7 19.1 46 471-522 662-707 (814)
228 3mkq_A Coatomer beta'-subunit; 96.3 0.12 4.2E-06 58.3 18.9 100 469-592 607-707 (814)
229 1nzn_A CGI-135 protein, fissio 96.3 0.038 1.3E-06 44.0 9.9 100 572-672 7-110 (126)
230 1wy6_A Hypothetical protein ST 96.2 0.27 9.4E-06 39.0 13.8 64 638-702 94-157 (172)
231 3mkq_B Coatomer subunit alpha; 95.7 0.74 2.5E-05 39.2 16.2 98 110-228 17-114 (177)
232 3mkq_B Coatomer subunit alpha; 95.7 0.25 8.6E-06 42.1 13.1 127 576-733 15-141 (177)
233 1y8m_A FIS1; mitochondria, unk 95.6 0.12 4.1E-06 41.8 10.2 78 632-711 36-116 (144)
234 3lvg_A Clathrin heavy chain 1; 95.5 8.3E-06 2.8E-10 80.1 -17.0 119 61-194 52-170 (624)
235 3o48_A Mitochondria fission 1 95.3 0.082 2.8E-06 42.2 8.1 79 634-714 39-120 (134)
236 3ffl_A Anaphase-promoting comp 95.0 0.13 4.3E-06 43.1 8.7 24 534-557 66-89 (167)
237 3ffl_A Anaphase-promoting comp 94.9 0.15 5E-06 42.7 8.9 45 669-716 121-165 (167)
238 4ady_A RPN2, 26S proteasome re 94.9 6 0.00021 43.8 38.2 26 171-196 233-258 (963)
239 4h7y_A Dual specificity protei 94.7 0.32 1.1E-05 39.7 10.1 114 458-574 10-136 (161)
240 3lvg_A Clathrin heavy chain 1; 94.7 0.00016 5.5E-09 71.2 -10.6 224 39-293 94-324 (624)
241 4gns_B Protein CSD3, chitin bi 94.6 0.13 4.5E-06 55.6 10.3 59 638-697 340-398 (754)
242 2ff4_A Probable regulatory pro 94.1 1.5 5E-05 43.8 16.2 117 578-708 127-248 (388)
243 3o48_A Mitochondria fission 1 93.8 0.43 1.5E-05 38.1 9.0 78 526-603 35-115 (134)
244 1y8m_A FIS1; mitochondria, unk 93.8 0.87 3E-05 36.9 11.0 76 528-603 36-114 (144)
245 3txn_A 26S proteasome regulato 92.2 3.2 0.00011 41.1 14.8 97 497-594 20-127 (394)
246 4gns_B Protein CSD3, chitin bi 91.7 0.58 2E-05 50.6 9.5 43 672-716 615-657 (754)
247 4b4t_P 26S proteasome regulato 91.0 13 0.00044 37.7 18.5 186 509-698 29-246 (445)
248 2wpv_A GET4, UPF0363 protein Y 91.0 11 0.00037 35.7 19.7 80 564-662 132-215 (312)
249 4b4t_P 26S proteasome regulato 90.2 15 0.00051 37.3 18.1 191 427-626 30-244 (445)
250 4fhn_B Nucleoporin NUP120; pro 89.9 4.9 0.00017 46.8 16.0 159 383-548 817-988 (1139)
251 4fhn_B Nucleoporin NUP120; pro 89.6 4.8 0.00016 46.9 15.6 164 534-716 815-982 (1139)
252 1zbp_A Hypothetical protein VP 89.6 1.8 6.1E-05 39.6 9.3 119 607-736 4-129 (273)
253 1wy6_A Hypothetical protein ST 89.4 7.1 0.00024 31.2 16.0 67 342-409 90-156 (172)
254 2ff4_A Probable regulatory pro 87.8 1.7 6E-05 43.3 9.0 70 604-674 175-249 (388)
255 3txn_A 26S proteasome regulato 86.6 26 0.0009 34.5 25.1 299 414-738 20-345 (394)
256 1qsa_A Protein (soluble lytic 84.2 46 0.0016 35.3 35.0 202 474-695 227-438 (618)
257 4ady_A RPN2, 26S proteasome re 84.1 57 0.002 36.3 44.8 258 352-627 383-656 (963)
258 1zbp_A Hypothetical protein VP 84.1 9.7 0.00033 34.8 10.9 48 578-625 9-56 (273)
259 1v54_E Cytochrome C oxidase po 83.0 8.8 0.0003 28.8 8.1 32 127-158 39-70 (109)
260 2wpv_A GET4, UPF0363 protein Y 82.9 33 0.0011 32.5 20.0 110 278-402 38-158 (312)
261 1v54_E Cytochrome C oxidase po 82.7 6 0.00021 29.6 7.2 44 187-230 29-72 (109)
262 3lpz_A GET4 (YOR164C homolog); 82.4 35 0.0012 32.6 22.1 109 278-401 40-159 (336)
263 3kae_A CDC27, possible protein 81.7 22 0.00074 29.7 12.4 87 606-698 39-142 (242)
264 1qsa_A Protein (soluble lytic 81.1 60 0.0021 34.4 35.3 118 427-559 228-347 (618)
265 3esl_A Checkpoint serine/threo 79.9 8.3 0.00028 33.5 8.4 59 648-706 92-151 (202)
266 2p58_C Putative type III secre 79.0 13 0.00045 27.7 7.8 30 493-524 68-97 (116)
267 4b4t_R RPN7, 26S proteasome re 77.6 16 0.00055 36.9 11.4 99 601-699 132-237 (429)
268 2uwj_G Type III export protein 76.9 12 0.00043 27.7 7.2 49 471-525 49-97 (115)
269 2y69_E Cytochrome C oxidase su 75.5 17 0.0006 28.9 8.1 41 156-196 76-116 (152)
270 4b4t_R RPN7, 26S proteasome re 74.4 27 0.00091 35.2 12.0 98 566-663 131-236 (429)
271 2y69_E Cytochrome C oxidase su 71.7 36 0.0012 27.2 9.1 60 186-246 71-130 (152)
272 2wvi_A Mitotic checkpoint seri 71.4 14 0.00049 30.9 7.4 59 652-710 77-136 (164)
273 4gq2_M Nucleoporin NUP120; bet 70.0 33 0.0011 38.9 12.6 49 575-627 819-867 (950)
274 4a1g_A Mitotic checkpoint seri 68.5 14 0.00047 30.5 6.7 56 652-707 82-138 (152)
275 2p58_C Putative type III secre 64.5 39 0.0013 25.2 7.5 49 213-267 50-98 (116)
276 2uwj_G Type III export protein 59.9 38 0.0013 25.3 6.7 49 213-267 49-97 (115)
277 4aez_C MAD3, mitotic spindle c 56.8 46 0.0016 29.4 8.2 54 652-705 131-185 (223)
278 3esl_A Checkpoint serine/threo 51.0 1E+02 0.0035 26.8 9.2 68 673-742 83-150 (202)
279 2ynq_A ESSB; membrane protein, 48.5 1.1E+02 0.0039 25.1 8.9 84 608-696 16-99 (161)
280 4b4t_S RPN3, 26S proteasome re 46.4 1.4E+02 0.0047 30.6 10.9 71 532-602 232-306 (523)
281 1ya0_A SMG-7 transcript varian 45.1 68 0.0023 32.8 8.7 63 544-607 165-227 (497)
282 3lpz_A GET4 (YOR164C homolog); 43.9 2.2E+02 0.0076 27.1 26.8 76 530-624 135-211 (336)
283 3kae_A CDC27, possible protein 43.7 1.4E+02 0.0049 24.9 13.2 112 612-734 14-141 (242)
284 2ijq_A Hypothetical protein; s 43.5 72 0.0025 26.5 6.9 57 642-698 39-103 (161)
285 1k1a_A B-cell lymphoma 3-encod 42.5 1E+02 0.0035 27.4 9.0 22 142-163 15-36 (241)
286 2wvi_A Mitotic checkpoint seri 42.2 1.4E+02 0.0048 24.9 8.5 39 631-669 92-130 (164)
287 3eab_A Spastin; spastin, MIT, 42.0 55 0.0019 23.8 5.2 41 684-735 33-76 (89)
288 2d2s_A Exocyst complex compone 41.7 1.3E+02 0.0045 27.0 9.1 30 166-195 89-118 (235)
289 1ya0_A SMG-7 transcript varian 41.4 1.4E+02 0.0049 30.5 10.3 79 603-683 155-233 (497)
290 4b4t_S RPN3, 26S proteasome re 41.4 79 0.0027 32.3 8.2 65 496-560 231-299 (523)
291 3eiq_C Programmed cell death p 40.7 2.6E+02 0.0089 27.0 13.0 25 241-265 57-81 (358)
292 1wfd_A Hypothetical protein 15 39.0 87 0.003 23.1 6.2 15 650-664 11-25 (93)
293 4a1g_A Mitotic checkpoint seri 37.3 1.7E+02 0.0059 24.0 9.7 47 549-595 83-130 (152)
294 2d2s_A Exocyst complex compone 36.3 2E+02 0.0069 25.8 9.4 88 503-593 25-118 (235)
295 2dl1_A Spartin; SPG20, MIT, st 34.7 1.6E+02 0.0054 22.8 7.0 59 650-735 18-82 (116)
296 4ets_A Ferric uptake regulatio 34.3 82 0.0028 26.3 6.1 46 103-148 37-84 (162)
297 1bpo_A Protein (clathrin); cla 34.1 2.8E+02 0.0095 27.8 10.4 56 31-89 332-387 (494)
298 3eyy_A Putative iron uptake re 32.3 1.1E+02 0.0037 24.9 6.5 34 114-147 33-66 (145)
299 2ijq_A Hypothetical protein; s 32.0 2.2E+02 0.0075 23.6 8.8 52 355-406 44-103 (161)
300 4gq2_M Nucleoporin NUP120; bet 30.8 2.8E+02 0.0095 31.3 11.6 52 384-440 816-867 (950)
301 2fe3_A Peroxide operon regulat 29.5 1.5E+02 0.0052 24.0 6.9 43 105-147 28-70 (145)
302 3bu8_A Telomeric repeat-bindin 29.2 1.3E+02 0.0043 26.4 6.2 23 574-596 122-144 (235)
303 2nsz_A Programmed cell death p 28.5 1.6E+02 0.0054 23.4 6.6 23 278-300 12-34 (129)
304 1wdy_A 2-5A-dependent ribonucl 28.0 1.4E+02 0.0048 27.2 7.6 12 328-339 199-210 (285)
305 3ubw_A 14-3-3E, 14-3-3 protein 27.8 3.5E+02 0.012 24.6 11.5 169 565-733 30-225 (261)
306 2w2u_A Hypothetical P60 katani 27.3 66 0.0023 23.2 3.7 18 681-698 30-47 (83)
307 1wdy_A 2-5A-dependent ribonucl 26.9 1.6E+02 0.0054 26.8 7.7 24 284-307 190-213 (285)
308 2nsz_A Programmed cell death p 26.6 2E+02 0.007 22.7 6.9 21 174-194 13-33 (129)
309 3mwm_A ZUR, putative metal upt 26.4 97 0.0033 25.0 5.1 47 67-113 17-63 (139)
310 2zu6_B Programmed cell death p 26.0 4.1E+02 0.014 24.9 10.3 23 242-264 7-29 (307)
311 2xig_A Ferric uptake regulatio 25.9 2.1E+02 0.007 23.4 7.1 45 103-147 31-75 (150)
312 2v6y_A AAA family ATPase, P60 25.4 74 0.0025 22.9 3.7 18 681-698 22-39 (83)
313 1mzb_A Ferric uptake regulatio 25.3 1.8E+02 0.0061 23.2 6.6 46 67-112 21-67 (136)
314 3lxu_X Tripeptidyl-peptidase 2 25.2 8.5E+02 0.029 28.5 13.8 83 653-740 1267-1349(1354)
315 3eiq_C Programmed cell death p 24.3 4.8E+02 0.017 25.1 13.6 25 311-335 220-244 (358)
316 2crb_A Nuclear receptor bindin 23.9 99 0.0034 22.6 3.9 25 638-662 18-42 (97)
317 3iqu_A 14-3-3 protein sigma; s 23.5 4E+02 0.014 23.8 11.5 49 686-735 149-204 (236)
318 3bqo_A Telomeric repeat-bindin 23.2 95 0.0032 26.7 4.4 31 573-603 124-154 (211)
319 2fe3_A Peroxide operon regulat 23.0 3E+02 0.01 22.2 8.5 43 141-183 29-71 (145)
320 4aez_C MAD3, mitotic spindle c 22.7 2.3E+02 0.0079 25.0 7.0 56 686-742 130-185 (223)
321 2ion_A PDCD4, programmed cell 22.6 1.3E+02 0.0046 24.7 5.3 24 277-300 13-36 (152)
322 1mzb_A Ferric uptake regulatio 22.5 2.9E+02 0.0099 21.9 7.3 58 89-147 9-67 (136)
323 3ltm_A Alpha-REP4; protein eng 22.5 3.7E+02 0.013 23.0 19.3 141 97-253 32-172 (211)
324 3ax2_A Mitochondrial import re 22.3 2E+02 0.007 20.0 6.5 23 676-698 23-45 (73)
325 3eyy_A Putative iron uptake re 22.1 2.7E+02 0.0091 22.5 7.0 34 149-182 33-66 (145)
326 3kea_A K1L; tropism, ANK repea 21.8 2.1E+02 0.0072 26.4 7.4 8 335-342 215-222 (285)
327 2rpa_A Katanin P60 ATPase-cont 21.5 74 0.0025 22.6 2.9 26 638-663 15-40 (78)
328 2w57_A Ferric uptake regulatio 21.4 2.7E+02 0.0094 22.6 7.0 58 89-147 8-66 (150)
329 3kea_A K1L; tropism, ANK repea 21.3 2E+02 0.007 26.5 7.2 14 319-332 169-182 (285)
330 2crb_A Nuclear receptor bindin 20.6 1.5E+02 0.0051 21.7 4.3 26 672-697 17-42 (97)
331 2ion_A PDCD4, programmed cell 20.4 1.8E+02 0.0061 23.9 5.6 21 174-194 15-35 (152)
332 2o03_A Probable zinc uptake re 20.4 1.7E+02 0.0059 23.1 5.5 44 69-112 16-59 (131)
333 1oyz_A Hypothetical protein YI 20.1 4.9E+02 0.017 23.6 22.9 209 467-697 43-261 (280)
334 2w57_A Ferric uptake regulatio 20.1 2.5E+02 0.0084 22.9 6.5 58 58-115 11-69 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=363.56 Aligned_cols=522 Identities=10% Similarity=-0.033 Sum_probs=375.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHH
Q 047305 144 FRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAY 223 (767)
Q Consensus 144 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 223 (767)
.+.|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34444444444444332 256667777777777777777777777777643 456677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 224 RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEK 303 (767)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 303 (767)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. +.. ....+...++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccc
Confidence 777766432 45666777777777777777777777764211 110 0000000000 1123
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHH
Q 047305 304 IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARS--L-QVEIWKRDSLPNTHT 380 (767)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~ 380 (767)
..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 3446778888888888888888888888888876433 45555555544433322222111 1 333334344344556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
|+.++..|.+.|++++|..+|+++.+. .++..++..++.+|.+.|++++|..+|+++.. ..+.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~ 338 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE--------------IDPYN 338 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------cCccc
Confidence 677788888888999999999888765 36888889999999999999999999988852 12335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
..++..++.++...|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 416 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHS 416 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 5677888888889999999999999887653 44788889999999999999999999999987632 256789999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++++..|.++.++..++.+|.+.|++++|+
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999998764 4577888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hh----cCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 621 QGLLEM-DF----KLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 621 ~~~~~~-~~----~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
+.+.++ .. ...|++ ..+|..++.+|.+.|++++|++.++++.+.+ |.++.++..++.+|.+.|++++|.++|+
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998884 22 224554 5679999999999999999999999999887 7789999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHh
Q 047305 695 YTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
++++.. |+.......+..++
T Consensus 575 ~~l~~~--p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 575 ESLAIS--PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHhcC--CCChHHHHHHHHHH
Confidence 998854 77665555554443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-40 Score=360.75 Aligned_cols=505 Identities=12% Similarity=-0.009 Sum_probs=298.7
Q ss_pred CCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047305 76 PNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAV 155 (767)
Q Consensus 76 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 155 (767)
.+.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444444444332 24667889999999999999999999999985 357888899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHccCCHh
Q 047305 156 YYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQR---------------GILPNKFTYTIVISGLCQINRAD 220 (767)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~li~~~~~~g~~~ 220 (767)
|+++... +++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 578889999999999999999999999853221 12234666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEAL--AL-LRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 297 (767)
+|.++|+++.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|..+|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777664321 3344444444333222221111 11 2333333323333445555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
++... .++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++...|++++|..+++.+.+..+ .+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 66544 346666666666666666666666666666655432 455566666666666666666666666664432 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 378 THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
..++..++..|.+.|++++|..+|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------- 434 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAA----------------- 434 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 55666666666666666666666666655432 245566666666666666666666665553
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL 537 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 537 (767)
+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|..+
T Consensus 435 -------------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 481 (597)
T 2xpi_A 435 -------------------------------RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNEL 481 (597)
T ss_dssp -------------------------------HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred -------------------------------HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 332 12444555555555555555555555555554421 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC----CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQN----GCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++++..|.++.++..++.+|.
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555555555555555443 33444 4455555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
..|++++|.+.+.+... ..|+++.++..++.+|
T Consensus 562 ~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLA-ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence 55555555555555221 2355555555555554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.8e-29 Score=256.48 Aligned_cols=360 Identities=13% Similarity=0.066 Sum_probs=176.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 282 GLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQ 361 (767)
Q Consensus 282 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (767)
.+.+.|++++|...++++....+. +...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555444443222 23334444444444555555555554444432 1234444444444545555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 047305 362 ARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 441 (767)
|...++.+.+..+ .+...+..++..+.+.|++++|...++++.+..+. +...+..+...+...|++++|...|+++
T Consensus 86 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 161 (388)
T 1w3b_A 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA-- 161 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 5555444444332 23334444444555555555555555544443211 2233344444444444444444444443
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
.+.. +.+..+|..+..++...|++++|+..|++
T Consensus 162 ----------------------------------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 162 ----------------------------------------------IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ----------------------------------------------HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------------------------------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3331 11344455555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
+...+.. +...+..+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|++.|+++++..|.++.
T Consensus 195 al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 195 AVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 5544211 23344555555555555555555555554432 223445555555555555555555555555555555555
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
++..++.++.+.|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++++.. |.+..++..++.+|.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555555555555555555555555221 135555555555555555555555555555555543 444555555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~ 698 (767)
+.|++++|...|+++++
T Consensus 351 ~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 55555555555555554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=8.8e-29 Score=256.47 Aligned_cols=366 Identities=13% Similarity=0.051 Sum_probs=279.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047305 351 KGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELE 430 (767)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 430 (767)
..+.+.|++++|...+..+.+..+ .+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 334445555555555555554432 2344444555555556666666666655555432 24556666666666666666
Q ss_pred HHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047305 431 KANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG 510 (767)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 510 (767)
+|...|+++.. ..+.+...+..++..+...|++++|...|+++.+..+ .+...+..+...+...|
T Consensus 85 ~A~~~~~~al~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 85 EAIEHYRHALR--------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH--------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcc
Confidence 66666665531 1223444566666666666666667777766666532 24566778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWL 590 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (767)
++++|...|+++...... +..++..+...+...|++++|...|+++++.+ +.+...+..+..++...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987422 46789999999999999999999999999864 4467788999999999999999999999
Q ss_pred HHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 591 QYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
++++..|.++.++..++.++...|++++|+..+.+... ..|.++.+|..++.+|.+.|++++|++.|+++++.. |.++
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 305 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA 305 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH
Confidence 99999999999999999999999999999999998432 468888899999999999999999999999999987 8899
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
.++..++.++...|++++|+..++++++. .|+... +..+...+. ..|+ +++|...++++.+. .|+..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~-~~g~-~~~A~~~~~~a~~~--~p~~~ 373 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ-QQGK-LQEALMHYKEAIRI--SPTFA 373 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH-TTTC-CHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhh--CCCCH
Confidence 99999999999999999999999999864 466544 444555555 8888 99999999999864 66643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6e-28 Score=252.82 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 047305 82 YWQTLDELRSGNVSVVS-DVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL---------FLL 151 (767)
Q Consensus 82 a~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~~~ 151 (767)
+..+.+++.+.+....+ .+++.+|.+|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544444 34666677777777777777777777777777777777777777665443 455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 152 ALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 152 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 047305 232 SGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFR 285 (767)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (767)
.|+.||..||++||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555543
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-26 Score=243.62 Aligned_cols=464 Identities=11% Similarity=-0.049 Sum_probs=309.9
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047305 203 KFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282 (767)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (767)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|++++|...++++.+.. +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455556666666666666666666666543 566666666666666666666666666666543 2234556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047305 283 LFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA 362 (767)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 362 (767)
+...|++++|...|+++...++. +......++..+........+.+.+..+...+..|+...+..-. +
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~----- 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------E----- 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh------H-----
Confidence 66666666666666666655432 32333333333333222333333333222222222211111000 0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHh
Q 047305 363 RSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK---AGELEKANLLFYKM 439 (767)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 439 (767)
+ .......|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 151 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 151 ---R--KDKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---H--HhhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 0 00001112222211111110000000 000001124455555555554 89999999999988
Q ss_pred hc-----C-CCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 440 EI-----G-KNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 440 ~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
.. . ..|+.. ...+.+...+..++..+...|++++|...++++.+..+. ...+..++.++...|+++
T Consensus 216 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDE------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHTTTSTTCH------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHhhhhhccCcccc------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 63 1 011000 001455678889999999999999999999999887544 788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...|++++
T Consensus 288 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999997642 356788899999999999999999999998864 4467788889999999999999999999999
Q ss_pred hccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc------chHHHHHHHhh---cCCHHHHHHHHHHHHHc
Q 047305 594 RDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA------PYTIWLIGLCQ---DGQVKEALNIFSVLVEC 664 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 664 (767)
+..|.++.++..++.++...|++++|+..+.+... ..|.++. ++..++.+|.. .|++++|+..++++++.
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988422 1244443 79999999999 99999999999999998
Q ss_pred CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 665 KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 665 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
. |.++.++..++.+|...|++++|...|+++++.. |+......
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~ 487 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQ 487 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHH
Confidence 7 7888999999999999999999999999999855 77655444
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.2e-27 Score=250.66 Aligned_cols=186 Identities=16% Similarity=0.251 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---------HhHHHHHHHHHHHCCCCCCHHH
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR---------ADEAYRLFLKMKDSGCSPDFVA 240 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 240 (767)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555666666666666666666666666666666666666666655433 5677777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 241 YNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE 320 (767)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (767)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777664
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.8e-25 Score=236.06 Aligned_cols=460 Identities=10% Similarity=-0.038 Sum_probs=328.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 167 NIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLN 246 (767)
Q Consensus 167 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (767)
....+......+.+.|++++|...|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35567788889999999999999999999875 789999999999999999999999999998864 336678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 247 GFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD 326 (767)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (767)
++.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+.......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------- 152 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-------- 152 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH--------
Confidence 99999999999999999998763 345555566665555544445544444444333233322222111000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 047305 327 AMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR---NGMVDDAQKLFNK 403 (767)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 403 (767)
......|+.......+..+...... .......+...+......+.. .|++++|+.++++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 --------DKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred --------hhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0111222322222111111100000 000001223444444444443 6777777777777
Q ss_pred HHH-----cCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 404 MEK-----AGCF--------PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 404 ~~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
+.+ .... .+..++..+...+...|++++|...|+++.. ..+. ...+..++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------------LFPR-VNSYIYMALI 279 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------------HCCC-HHHHHHHHHH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------hCcc-HHHHHHHHHH
Confidence 766 2111 1245666777778888888888888877741 1122 6677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 550 (767)
+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++...... +...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877643 36678888999999999999999999999987433 566788899999999999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHh---cCCHHHHHH
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQ---KGEVENAIQ 621 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~ 621 (767)
...++++.+.. +.+..++..++.++.+.|++++|...|+++++..|.++. ++..++.++.. .|++++|+.
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 99999998753 446778888999999999999999999999999888876 88899999999 999999999
Q ss_pred HHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 622 GLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 622 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.+.+... ..|.++.++..++.+|...|++++|...|+++++.+ |.++..+..+
T Consensus 437 ~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 437 LLEKASK-LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTMEEKLQAI 489 (514)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHHHHHHHH
T ss_pred HHHHHHH-hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 9988432 358888889999999999999999999999999987 6666666554
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.6e-24 Score=233.78 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=217.4
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
|++++|..+++++......+... ...-...+..+...+...|++++|...++++.+.. |+...+..+...+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPL-------RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCcchh-------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 57889999998886211100000 00013356777888899999999999999998874 4578888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|++++|+..++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998743 256789999999999999999999999998864 445678889999999999999999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccc------hHHHHHHHhhc----------C
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAP------YTIWLIGLCQD----------G 649 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~------~~~l~~~~~~~----------g 649 (767)
..|+++++..|.++.++..++.++...|++++|+..+.+. ... |.+... +..++.+|... |
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999999999999999999999999999999999999983 322 333332 44556888888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++.. |+...
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 497 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA--RTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHH
Confidence 9999999999999987 7889999999999999999999999999999854 55443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.2e-23 Score=218.61 Aligned_cols=366 Identities=13% Similarity=0.044 Sum_probs=261.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 292 AYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWK 371 (767)
Q Consensus 292 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 371 (767)
+...+.++....+ .+...+..++..+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...++.+.+
T Consensus 11 ~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444332 2455666677777777777777777777766532 2566666677777777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh
Q 047305 372 RDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS-V---GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL 447 (767)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (767)
.++ .+..++..++..|.+.|++++|...|+++.+.. |+ . ..+..++..+...
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--------------------- 144 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ--------------------- 144 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------------
Confidence 553 345666666677777777777777777766543 32 2 3344443332211
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
.+..++..+...|++++|...|+++.+.. +.+...+..++.+|...|++++|+..|+++....
T Consensus 145 ---------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 145 ---------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp ---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 12334556788899999999999998774 3477888999999999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHhc
Q 047305 528 RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL------------MTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
+.+..++..++.++...|++++|+..++++.+.. +.+...+..+ +..+.+.|++++|...|+++++.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3367789999999999999999999999998753 3344444444 77888999999999999999999
Q ss_pred cCCCcc----chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 596 ISGRDD----ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 596 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.|.++. .+..++.++.+.|++++|+..+.+... ..|+++.+|..++.+|...|++++|+..++++++.. |.++.
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 364 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ-MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQ 364 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHH
Confidence 888754 667889999999999999998888432 258888889999999999999999999999999886 77888
Q ss_pred hHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCCCCCCH
Q 047305 672 SCVKLIHG------------LCKRG-----YLDLAMDVFLY-TLKNGFILRP 705 (767)
Q Consensus 672 ~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 705 (767)
++..++.+ |...| ..+++.+.|++ +++ ..||.
T Consensus 365 ~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~ 414 (450)
T 2y4t_A 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGG
T ss_pred HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCC
Confidence 88888844 44444 55677777776 444 34553
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.3e-24 Score=231.98 Aligned_cols=427 Identities=12% Similarity=0.051 Sum_probs=285.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
.+..+...+.+.|++++|...|++++...+. +...+..+..++.+.|++++|+..++++.+.+.. +..++..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 4455555555555555555555555555554322 4455555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCC
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA------GCFPSVGMFNALIDGLCKAGE 428 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 428 (767)
..|++++|...++ .....+.+. ...+..+...+....|...++.+... ...|+.. .+..+....+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSC
T ss_pred HcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcC
Confidence 5566666655554 222221111 11122333334445566666655432 1123322 2233444455
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHcCCCCCH----
Q 047305 429 LEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY--------CTAGLIHKAYKILMQLAESGNLPDI---- 496 (767)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~~~~~~---- 496 (767)
.+.+...+.... ...+........+...+ ...|++++|...++++.+..+. +.
T Consensus 176 ~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 176 SHLEVSSVNTSS--------------NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp HHHHHHTSCCCC--------------SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred hHHHHHHHhhcc--------------ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 544443332221 11111112222222222 2235789999999999876432 22
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 497 ---ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 497 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
.++..+...+...|++++|+..++++... .|+...+..+...+...|++++|...++++.+.. +.+..++..++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHH
Confidence 34667778888999999999999999987 5567788899999999999999999999998864 45688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.++...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL-KFPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999998432 358888889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHh------HHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 047305 654 ALNIFSVLVECKAIVTPPS------CVKLIHGLCKR----------GYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLL 716 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 716 (767)
|+..++++++.. |.++.. +..++.+|... |++++|+..|+++++.. |+... +..+...+.
T Consensus 397 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 397 AIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 999999998765 333322 45567888888 99999999999999854 66544 444555554
Q ss_pred hcCCccHHHHHHHHHHHHHc
Q 047305 717 FSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 717 ~~~~~~~~~a~~~~~~~~~~ 736 (767)
..|+ +++|...+++..+.
T Consensus 474 -~~g~-~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 474 -QMEK-IDEAIELFEDSAIL 491 (537)
T ss_dssp -HTTC-HHHHHHHHHHHHHH
T ss_pred -Hhcc-HHHHHHHHHHHHHh
Confidence 8888 99999999998875
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5e-23 Score=218.06 Aligned_cols=364 Identities=14% Similarity=0.055 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDM 334 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (767)
..+...+..+.... +.+...+..+...+.+.|++++|..+|+++....+. +...+..++..+...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555554432 335678899999999999999999999999987543 7889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 335 RERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNT---HTFTILICGMCRNGMVDDAQKLFNKMEKAGCFP 411 (767)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 411 (767)
.+.+.. +..++..+...|...|++++|...++.+.+..+ .+. ..+..++..+..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH---------------------
Confidence 987544 688999999999999999999999999998764 333 455555444321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
..+..+...+...|++++|+..|+++.. ..+.+...+..++.++...|++++|...|+++.+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILE--------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2234456677889999999999999852 234567889999999999999999999999998764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHH------------HHHHHhcCCHHHHHHHHHHhh
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTL------------INGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 558 (767)
+.+..+|..++.+|...|++++|+..|+++... .|+. ..+..+ +..+...|++++|..+|++++
T Consensus 208 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 208 -NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347889999999999999999999999999976 4443 334444 788999999999999999998
Q ss_pred hCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 559 QNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 559 ~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
+. .|+ ..++..++.++.+.|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|+
T Consensus 285 ~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~ 361 (450)
T 2y4t_A 285 KT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNEN 361 (450)
T ss_dssp HH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSS
T ss_pred hc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcc
Confidence 84 343 447888899999999999999999999999999999999999999999999999999988532 4699
Q ss_pred CccchHHHHHH------------HhhcC-----CHHHHHHHHHH-HHHcC
Q 047305 634 QLAPYTIWLIG------------LCQDG-----QVKEALNIFSV-LVECK 665 (767)
Q Consensus 634 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~ 665 (767)
++.++..++.+ |...| +.+++.+.|++ +++..
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 98888888843 55555 66788888887 45543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7e-21 Score=194.83 Aligned_cols=323 Identities=12% Similarity=-0.008 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047305 343 TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDG 422 (767)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (767)
...+..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|+..++++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 34555566666666666666666666666543 34556666666666666666666666666654322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 423 LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV---HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
+...|++++|...|+++. ...+ .+...+..+..... ...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~ 123 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVL--------------KSNPSEQEEKEAESQLVKADE-----------------------MQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHH--------------TSCCCHHHHHHHHHHHHHHHH-----------------------HHHH
T ss_pred HHHcCChHHHHHHHHHHH--------------hcCCcccChHHHHHHHHHHHH-----------------------HHHH
Confidence 666666666666666653 1112 22222222211110 1112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..+...+...|++++|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+..++..++.++...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3346778888999999999999887642 356678888888999999999999999988753 55677888888889999
Q ss_pred CChhHHHHHHHHHHhccCCCccchH------------HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc----chHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESM------------KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA----PYTIWLI 643 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~----~~~~l~~ 643 (767)
|++++|...|+++++..|.++..+. .++..+...|++++|+..+.+... ..|.++. .+..++.
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-TEPSVAEYTVRSKERICH 280 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHH
Confidence 9999999999999998888887654 337778899999999999888432 2366553 3557889
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++. .|+......
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~ 344 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIRE 344 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 9999999999999999999886 778999999999999999999999999999874 477554333
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.1e-20 Score=193.43 Aligned_cols=333 Identities=13% Similarity=0.016 Sum_probs=274.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 307 DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
+...+..+...+...|++++|+..|+++.+.... +..++..+...+...|++++|...++.+.+..+ .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 4567888999999999999999999999887543 688999999999999999999999999998764 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH
Q 047305 387 GMCRNGMVDDAQKLFNKMEKAGCFP----SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462 (767)
Q Consensus 387 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (767)
.+...|++++|...++++.+.. | +...+..+...+. ..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------------------------~~ 121 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------------------------MQ 121 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------------------------HH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------------------------HH
Confidence 9999999999999999998764 4 2233333322211 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
....++..+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++.... +.+..++..+...+.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 233456778899999999999999988743 477888999999999999999999999999874 336778899999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHH------------HHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYK------------SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKS 606 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l 606 (767)
..|++++|...++++.+.. +.+...+. .++..+.+.|++++|...|+++++..|.++.. +..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999998753 33333332 23666889999999999999999999998754 4468
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
+.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..+..++...+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQ-MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 9999999999999999998432 368889999999999999999999999999999987 777888887777665443
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.3e-17 Score=182.17 Aligned_cols=419 Identities=13% Similarity=0.110 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGI--LPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNG 247 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (767)
--...++.|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..++..+.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 335556667777777777777777763310 11223344455555444 445555554444321 1 2235666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047305 248 FCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDA 327 (767)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 327 (767)
+...|.+++|..+|++... .....+.++ -..+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 6777888888888777521 111122222 25677777777777552 466777888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 328 MKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA 407 (767)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 407 (767)
.+.|.+. -|...|..++..+.+.|++++|.+.+....+....+ ...+.++.+|++.+++++...+. +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 8887553 266777778888888888888888887776655322 23334777788877777533332 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 408 GCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQL 487 (767)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (767)
.++...|..+...|...|++++|..+|... ..|..++..+.+.|+++.|.+.+++.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------------------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------------------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 246666777778888888888888888664 26777788888888888888888776
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 047305 488 AESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA 567 (767)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 567 (767)
. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-...
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 2 5677877777888888877777765532 2245556677788888888888888887776543 33444
Q ss_pred hHHHHHHHHHhc--CChhHHHHHHHHHHhccC-----CCccchHHHHHHHHhcCCHHHHHHHHHHh-hh----------c
Q 047305 568 VYKSLMTWSCRR--RKFSLAFSLWLQYLRDIS-----GRDDESMKSIEEFLQKGEVENAIQGLLEM-DF----------K 629 (767)
Q Consensus 568 ~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~ 629 (767)
.|..+..+|.+- ++..++.+.|..-+...| .+...|..++..|.+.|++++|+..+.+- .. -
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 555555555443 456666666665555444 55666777788888888888887444432 11 0
Q ss_pred CCCCCccchHHHHHHHhhcC---------------CHHHHHHHHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDG---------------QVKEALNIFS 659 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 659 (767)
..+.++..|...+..|...+ +++++..+++
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 13566667777777777655 6666666665
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=5.9e-18 Score=186.82 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=96.4
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHH----------------------
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDV---------------------- 100 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~---------------------- 100 (767)
+|+.|..|-.-+.+..+ +.-....++..+...+.+.++..+|-+..+.+-+.....
T Consensus 525 ~P~~~~~fa~~L~~~~~--p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~ 602 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEE--PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGN 602 (1630)
T ss_pred ChHHHHHHHHHHhcCCC--CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhc
Confidence 68888888777666543 344466688888888888888888877776654322222
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 047305 101 -------FFVLISGYYKVGDCEKALESFGKMKEF------DCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167 (767)
Q Consensus 101 -------~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 167 (767)
+..+...|-+.|-++.|++.|..+... ....++. -+ ..|...=+.+.+.+.+++|.+.++..+
T Consensus 603 ~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~---~l-~~~fg~l~~~~s~~~l~~~l~~n~~qn 678 (1630)
T 1xi4_A 603 QMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPE---WL-VNYFGSLSVEDSLECLRAMLSANIRQN 678 (1630)
T ss_pred CccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHH---HH-HHHHhcCCHHHHHHHHHHHHHHhHhhh
Confidence 224555666677777777776544320 0011111 11 122223345666666666665433322
Q ss_pred HHHH-------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 168 IVTF-------------SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 168 ~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
..+. ..++..+-+.+.++...-.+..+.. +.-|+......|.++++.|+..+..++.++
T Consensus 679 lq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 679 LQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred hhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 2222 2233333333333333322222222 334677777888888888877776665443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=7.9e-18 Score=179.39 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=253.9
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 047305 307 DVVLYGVMIRGLSE----AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD----LGLLDQARSLQVEIWKRDSLPNT 378 (767)
Q Consensus 307 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 378 (767)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...++...+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 44555556666665 566666666666666543 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCchhhhh
Q 047305 379 HTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK----AGELEKANLLFYKMEIGKNPTLFLR 450 (767)
Q Consensus 379 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 450 (767)
..+..|...|.. .+++++|+..|++..+.| ++..+..+...|.. .+++++|+..|++...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~--------- 179 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE--------- 179 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------
Confidence 455556666655 566777777777766653 45566666666665 5677777777766641
Q ss_pred hccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 047305 451 LSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----VGNINGALKLFKEL 522 (767)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 522 (767)
..++..+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|+.+|++.
T Consensus 180 -------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 180 -------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp -------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 1245566666666666 677777888887777653 45667777777775 78889999999888
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHH
Q 047305 523 QLKGLRPDSVTYGTLINGLQR----VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-----RKFSLAFSLWLQYL 593 (767)
Q Consensus 523 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 593 (767)
.+.+ +...+..+...|.. .+++++|+..|+++.+.| +...+..+..+|... +++++|...|+++.
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 45566677777776 788999999999988654 456667777777776 89999999999988
Q ss_pred hccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCC
Q 047305 594 RDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 666 (767)
+. .++.++..++..|...| ++++|++.+.+... ..++.++..++.+|.. .+++++|+.+|+++.+.+
T Consensus 324 ~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 324 EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA---KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 75 45677888888888766 78889888888543 2456779999999998 799999999999998865
Q ss_pred CCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 667 IVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
++.++..++.+|.. .+++++|...|+++++.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46788999999998 899999999999998876
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=3.1e-18 Score=182.58 Aligned_cols=381 Identities=13% Similarity=0.010 Sum_probs=249.6
Q ss_pred cccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 047305 273 LGSYSCLIDGLFR----AKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE----AGKVKDAMKLLSDMRERGIVPDTY 344 (767)
Q Consensus 273 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 344 (767)
...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|++..+.| +..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3344444444444 455555555555555442 34455555555555 555555555555555543 344
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047305 345 CYNALIKGFCD----LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMF 416 (767)
Q Consensus 345 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 416 (767)
.+..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.| ++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555554 455666666666555543 34445555555554 556666666666666543 55566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 047305 417 NALIDGLCK----AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQLA 488 (767)
Q Consensus 417 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 488 (767)
..+...|.. .+++++|..+|++... ..++..+..+...+.. .+++++|...|++..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSAT----------------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 666666665 6666666666666531 1233455555666654 667777777777776
Q ss_pred HcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhh
Q 047305 489 ESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRV-----DREEDAFRIFGQMPQ 559 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~ 559 (767)
+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|...++++.+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 653 45566667777776 788889999988887664 455667777777776 889999999999887
Q ss_pred CCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCCC
Q 047305 560 NGCTPSPAVYKSLMTWSCRRR---KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~p 632 (767)
.+ +...+..+..+|...| ++++|++.|+++.+. .++.++..++..|.. .+++++|++.+.+... .
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~---~ 396 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE---Q 396 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh---C
Confidence 64 4556677777777656 789999999999876 578888899999988 8999999999888543 3
Q ss_pred CCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 633 FQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAI--VTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.++.++..|+.+|.. .+++++|..+|+++.+.+.. .++.+...++.++... .++|.+...+..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~~ 465 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQYI 465 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHHH
Confidence 356779999999998 89999999999999988621 2566666666655432 344444344333
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.4e-20 Score=187.27 Aligned_cols=290 Identities=10% Similarity=-0.050 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+...+..++..+...|++++|..+|+++.. ..+.+...+..++..+...|++++|...++++.+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 86 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVME--------------KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 334455556666666677777666666541 122333445555666667777777777777776653
Q ss_pred CCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 492 NLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
+.+...|..+...+...| ++++|...++++...... +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 163 (330)
T 3hym_B 87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPML 163 (330)
T ss_dssp -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHH
Confidence 235677888888888888 888899998888876422 45678888888888999999999999888753 33456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC--------CCCCccchHHHH
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL--------NDFQLAPYTIWL 642 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~p~~~~~~~~l~ 642 (767)
.++.+|...|++++|.+.|+++++..|.++.++..++.++...|++++|+..+.+..... .|..+.++..++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 788888899999999999999999999998888899999999999999988888732211 155566799999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCc
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDN 721 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~ 721 (767)
.+|...|++++|+..++++++.+ |.++.++..++.+|...|++++|...|+++++. .|+... +..+..++....|+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 99999999999999999999887 778889999999999999999999999998764 466544 44444445335554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.1e-20 Score=186.66 Aligned_cols=291 Identities=13% Similarity=-0.007 Sum_probs=224.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 377 NTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
+...+..++..+...|++++|+.+++++.+.... +...+..++..+...|++++|...++++.. .
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------~ 85 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVD--------------L 85 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--------------H
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--------------h
Confidence 3445556666677777777777777777665432 444555566677777777777777777641 1
Q ss_pred CcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 457 RVHDKASLQTMVEQYCTAG-LIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
.+.+...+..++..+...| ++++|...|+++.+..+ .+...|..+..++...|++++|+..++++...... +...+.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 163 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPML 163 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHH
Confidence 2334556677777777777 78888888887776642 35667888888999999999999999998876422 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc---------CCCccchHHH
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI---------SGRDDESMKS 606 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l 606 (767)
.+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. |..+.++..+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 78888999999999999999998753 4567888888999999999999999999999765 6667788899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC-KRGY 685 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 685 (767)
+.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|++.++++++.. |.++.++..++.++. ..|+
T Consensus 243 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 243 GHVCRKLKKYAEALDYHRQALV-LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 9999999999999998888432 258888889999999999999999999999999887 778889999999884 5565
Q ss_pred hh
Q 047305 686 LD 687 (767)
Q Consensus 686 ~~ 687 (767)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 43
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.9e-17 Score=178.35 Aligned_cols=408 Identities=10% Similarity=0.019 Sum_probs=275.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 307 DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|++++... |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5556666666 355667777777777766652 2255666666666666777777777777776654 35555555553
Q ss_pred H-HHhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhhcCCCchhhhh
Q 047305 387 G-MCRNGMVDDAQK----LFNKMEKA-GCFP-SVGMFNALIDGLCK---------AGELEKANLLFYKMEIGKNPTLFLR 450 (767)
Q Consensus 387 ~-~~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~ 450 (767)
. ....|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++... .|.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~--~P~---- 161 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV--NPM---- 161 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT--SCC----
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh--chh----
Confidence 2 234455555544 55555432 3332 45666666665544 6889999999998863 121
Q ss_pred hccCCCCcchHHHHHHHHHH-------------HHhcCCHHHHHHHHHHH------HHcC---CCCC--------HhhHH
Q 047305 451 LSQGGNRVHDKASLQTMVEQ-------------YCTAGLIHKAYKILMQL------AESG---NLPD--------IITYN 500 (767)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~-------------~~~~g~~~~A~~~~~~~------~~~~---~~~~--------~~~~~ 500 (767)
......+...... ....+++..|..+++.. .+.. ..|+ ...|.
T Consensus 162 -------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 162 -------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp -------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 0111122211111 01345677777777652 2211 1333 24555
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHhh
Q 047305 501 SLINGFCKV----GNI----NGALKLFKELQLKGLRPDSVTYGTLINGLQR-------VDREE-------DAFRIFGQMP 558 (767)
Q Consensus 501 ~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~ 558 (767)
..+...... ++. ..+..+|+++.... +-+...|..++..+.. .|+++ +|+.++++++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 554332221 232 47788999998763 2256778888887775 68876 8999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 559 QNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
+.-.+.+...+..++..+.+.|++++|..+|+++++..|.++ .++...+..+.+.|+.++|++.+.+... ..|.+...
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~~~~~~~ 392 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRHHV 392 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTCCTHH
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-ccCCchHH
Confidence 632345688899999999999999999999999999988885 5888889999999999999999988432 23555554
Q ss_pred hHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--HHHHHHHHH
Q 047305 638 YTIWLIG-LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF-ILR--PRVCNYLLR 713 (767)
Q Consensus 638 ~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~ 713 (767)
+...+.. +...|++++|..+|+++++.. |.++..|..++..+.+.|+.++|+.+|++++..+. .|+ ..++...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5555544 335899999999999999886 77899999999999999999999999999998642 222 225656666
Q ss_pred HHhhcCCccHHHHHHHHHHHHHc
Q 047305 714 SLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 714 ~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
... ..|+ .+.+..+.+++.+.
T Consensus 472 ~e~-~~G~-~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 472 FES-NIGD-LASILKVEKRRFTA 492 (530)
T ss_dssp HHH-HSSC-HHHHHHHHHHHHHH
T ss_pred HHH-HcCC-HHHHHHHHHHHHHH
Confidence 655 7787 89999999988753
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=4.3e-20 Score=189.66 Aligned_cols=263 Identities=13% Similarity=-0.063 Sum_probs=159.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 416 FNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD 495 (767)
Q Consensus 416 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (767)
+..+...+...|++++|...|+++.. ..+.+...+..++..+...|++++|...|+++.+.. +.+
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 131 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQ--------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDN 131 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCC
Confidence 44444445555555555555554431 122233444445555555555555555555554443 224
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----------------HHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----------------TLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
..++..++.+|...|++++|+..++++...... +...+. .+... ...|++++|...++++.+
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHH
Confidence 555566666666666666666666666654221 111111 12222 366777777777777766
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 560 NGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 560 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
..... +..++..++.+|.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 288 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE-LQPGYIRSR 288 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHH
Confidence 43111 4667777777777777777777777777777777777777777777777777777777776321 246666677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----------hHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVT-----------PPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
..++.+|.+.|++++|+..|+++++.. |.+ ..+|..++.+|...|++++|..++++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 777777777777777777777776654 333 5677777777777777777777766443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=5.2e-17 Score=174.96 Aligned_cols=436 Identities=10% Similarity=0.034 Sum_probs=295.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 226 FLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305 (767)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 305 (767)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444432 336677888887 467888999999999988753 3356678888888888899999999999888764
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 047305 306 PDVVLYGVMIRGL-SEAGKVKDAMK----LLSDMRER-GIVP-DTYCYNALIKGFCD---------LGLLDQARSLQVEI 369 (767)
Q Consensus 306 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 369 (767)
|+...|...+... ...|++++|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777666533 34566666554 66665443 4433 45566666665544 56778888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhh
Q 047305 370 WKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFL 449 (767)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (767)
++.........|..........|. .+...++. ...+++..|..++..+.. ...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~-----~~~ 209 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET-----VMK 209 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH-----HHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH-----HHH
Confidence 773111112223222211100110 11111111 123456667666655320 000
Q ss_pred hhccC-CCCcc--------hHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----
Q 047305 450 RLSQG-GNRVH--------DKASLQTMVEQYCTA----GLI----HKAYKILMQLAESGNLPDIITYNSLINGFCK---- 508 (767)
Q Consensus 450 ~~~~~-~~~~~--------~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 508 (767)
.+... ...++ ....|...+...... ++. ..+...|+++.... +.+...|..++..+..
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 00000 00111 123444444333221 232 47788999888763 3367888888887775
Q ss_pred ---cCCHH-------HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-H-hhHHHHHHH
Q 047305 509 ---VGNIN-------GALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-P-AVYKSLMTW 575 (767)
Q Consensus 509 ---~g~~~-------~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~ 575 (767)
.|+++ +|..++++.... +.| +...|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKF 365 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHH
Confidence 78887 899999999862 234 4668889999999999999999999999984 443 3 578888888
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHH-HHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE-FLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
+.+.|++++|.++|+++++..|.....+...+.. +...|+.++|...+.+ +.. .|+++.+|..++..+.+.|+.++
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhh
Confidence 8899999999999999999888777666655544 3468999999999988 443 48889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 654 ALNIFSVLVECKAIVTPP----SCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|..+|++++..+ +.++. .|...+......|+.+.+..+++++++.-
T Consensus 444 Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 444 TRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999875 33443 77778888888999999999999998753
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=5.2e-20 Score=188.70 Aligned_cols=263 Identities=12% Similarity=-0.002 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLIN 539 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 539 (767)
+...+..++..+...|++++|...|+++.+..+ .+..+|..++.+|...|++++|+..|+++..... .+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 445678888999999999999999999988743 4778899999999999999999999999998742 25678899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-H----------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPS-P----------AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKS 606 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l 606 (767)
+|...|++++|+..++++.+.. |+ . .++..++.++.+.|++++|...|+++++..|. ++.++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998742 22 2 22334577889999999999999999999999 88899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.. |.++.++..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT-VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998432 358888899999999999999999999999999987 77899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILR-------------PRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
++|+..|+++++.. |+ ...+..+...+. ..|+ .+.+....++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQQQVPHPAISGNIWAALRIALS-LMDQ-PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC------------CHHHHHHHHHHH-HHTC-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCCcccchhhhHHHHHHHHHHHHH-HcCc-HHHHHHHHHh
Confidence 99999999998743 33 344555666655 6676 6666665544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.4e-19 Score=182.90 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=229.7
Q ss_pred HHHcCCHHHHHH-HHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 047305 423 LCKAGELEKANL-LFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNS 501 (767)
Q Consensus 423 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 501 (767)
+...|++++|+. .+.+...- .| .....+...+..++..+...|++++|...|+++.+.. +.+...|..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~-~~---------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF-EE---------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp -----------CHHHHCCCCC-CS---------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhc-CC---------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344578888888 77765311 11 1112234567889999999999999999999999875 347788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH-----------
Q 047305 502 LINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK----------- 570 (767)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 570 (767)
+..++...|++++|+..++++..... .+..++..++.++...|++++|...++++.+.. +.+...+.
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998753 367789999999999999999999999998854 22222222
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 571 -----SLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 571 -----~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+...+ ..|++++|...|+++++..|. ++.++..++.++...|++++|+..+.+... ..|.++.++..++.
T Consensus 182 ~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~ 259 (368)
T 1fch_A 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VRPNDYLLWNKLGA 259 (368)
T ss_dssp ----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHH
Confidence 233334 899999999999999999999 788889999999999999999999998432 25888888999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------------HHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR------------PRVCNYL 711 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l 711 (767)
+|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++.. |+ ...+..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHH
Confidence 9999999999999999999987 7889999999999999999999999999998753 43 3456666
Q ss_pred HHHHhhcCCccHHHHHHHHHHH
Q 047305 712 LRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 712 ~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
...+. ..|+ +++|..++++.
T Consensus 337 ~~~~~-~~g~-~~~A~~~~~~~ 356 (368)
T 1fch_A 337 RLALS-MLGQ-SDAYGAADARD 356 (368)
T ss_dssp HHHHH-HHTC-GGGHHHHHTTC
T ss_pred HHHHH-HhCC-hHhHHHhHHHH
Confidence 66666 7787 89998887653
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.7e-18 Score=179.24 Aligned_cols=390 Identities=11% Similarity=-0.043 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 047305 238 FVAYNALLNGFCKLRRVDEALALLRSFEKD-----G--FVP-RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE-----K- 303 (767)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~- 303 (767)
...|+.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666655331 0 011 1234555555555555555555555554431 0
Q ss_pred CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 304 IE-PDVVLYGVMIRGLSEA--GKVKDAMKLLSDMRERGIVPDTYCYNALIKG---FCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 304 ~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
.. ....++..+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|...++..++.++ .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 00 1223344333333332 3455555555555543222 23333332222 2233444445555544444332 22
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 378 THTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 378 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
..++..+...+.. .|++++|..++++...... .+..++..+...|...|++++|...+++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------- 274 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKAL------------- 274 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHH-------------
Confidence 3333333322222 2344445555554444332 134444444555555555555555554442
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
...+.+..++..++..|...+... ... ............+.++.|...++....... .+..+
T Consensus 275 -~~~p~~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~ 336 (472)
T 4g1t_A 275 -EYIPNNAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRV 336 (472)
T ss_dssp -HHSTTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCC
T ss_pred -HhCCChHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhh
Confidence 111222333333333322110000 000 000000000111224455555555554421 13345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh--hHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA--VYKSLMTW-SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
+..+...+...|++++|+..|+++++....+... .+..+... +...|++++|+..|+++++..|........
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----- 411 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-----
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-----
Confidence 5556666666666666666666665533222111 12222221 234556666666666666655544221110
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
...+.+.+.+ ....+|.++.+|..+|.+|...|++++|++.|+++++.+ +.+|.+.
T Consensus 412 -----~~~l~~~~~~-~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~-~~~p~a~ 467 (472)
T 4g1t_A 412 -----KDKLQKIAKM-RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG-SLIPSAS 467 (472)
T ss_dssp -----HHHHHHHHHH-HHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred -----HHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcHh
Confidence 1111111111 111235555555555555555555555555555555544 3334333
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=5e-19 Score=181.38 Aligned_cols=265 Identities=11% Similarity=-0.029 Sum_probs=220.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+...+..+...+.+.|++++|...|+++.. ..+.+...+..++..+...|++++|...|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--------------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 345578888899999999999999998862 234567889999999999999999999999998874
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-h----------hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-V----------TYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
+.+..+|..++.+|...|++++|+..++++.... |+. . .+..+...+...|++++|+.+++++++.
T Consensus 130 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 130 -PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3367889999999999999999999999998763 332 2 2234578889999999999999999986
Q ss_pred CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchH
Q 047305 561 GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYT 639 (767)
Q Consensus 561 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~ 639 (767)
... .+..++..++.+|...|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++.
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~ 285 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE-IQPGFIRSRY 285 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHH
Confidence 422 16889999999999999999999999999999999999999999999999999999999998432 3588899999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC------------ChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV------------TPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.++.+|...|++++|+..|+++++.. |. +..+|..++.++...|+.+.|..+.++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999998764 22 367899999999999999999887765
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.3e-17 Score=163.05 Aligned_cols=262 Identities=7% Similarity=-0.051 Sum_probs=214.6
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD-KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
+-....|++..|+..++++. ...+.+ ......+..+|...|+++.|+..++.. ..|+..++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~--------------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~ 68 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK--------------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAV 68 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC--------------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--------------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHH
Confidence 44567899999999988763 111122 345566789999999999999877542 35677788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
..+...+...|+.++|++.++++...+..|+. ..+..+..++...|++++|+..+++ +.+...+..++.+|.+
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 88899999999999999999999987655654 4566777899999999999999987 4678889999999999
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.|++++|.+.|+++++..|++....... +..+...|++++|+..+.++... .|+++.+++.++.++.+.|++++|++
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999988865433322 24445569999999999995433 68999999999999999999999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL-AMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
.++++++.+ |.++.++..++.++...|+.++ +.++++++++.. |+++....
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~~d 273 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFIKE 273 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 999999997 8899999999999999999976 578999998754 88765544
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=9.8e-19 Score=173.40 Aligned_cols=371 Identities=12% Similarity=0.095 Sum_probs=190.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARS 364 (767)
Q Consensus 285 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (767)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566788888887772 2347888888888888888888888542 366688888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 047305 365 LQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKN 444 (767)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 444 (767)
.++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 76666553 2456777788888888888888877774 267778888999999999999999888776
Q ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 445 PTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 149 -----------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 149 -----------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp -----------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred -----------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 25778888999999999999999887 27889999999999999999996654442
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc--CChhHHHHHHHHHHhccC-----
Q 047305 525 KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR--RKFSLAFSLWLQYLRDIS----- 597 (767)
Q Consensus 525 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p----- 597 (767)
...+.....++..|.+.|++++|+.+++..+... +-....|..+..+|++- ++..+.++.|..-+...|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 2233335568888999999999999999998654 45567777777777654 466666776666666666
Q ss_pred CCccchHHHHHHHHhcCCHHHHHHHHHHh-hhc----------CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 598 GRDDESMKSIEEFLQKGEVENAIQGLLEM-DFK----------LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
.+...|..++..|.+.++++.|+..+.+- ... ..+.+...|...+..|. +...+++.-+..++...
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~- 356 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR- 356 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc-
Confidence 77888899999999999999998877763 220 13667777888888777 55566677777766432
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCc
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 721 (767)
-|+ ...+..+.+.|++.-+..+++.+... +....+.-+..++....+
T Consensus 357 -ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~----n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 357 -LDH---TRAVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNESLNNLFITEED 403 (449)
T ss_dssp -CCH---HHHHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHHHHHHHHHTTC
T ss_pred -cCc---HHHHHHHHHcCCcHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhh
Confidence 222 34556778999999999999877643 445556555555545554
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=3.2e-18 Score=172.42 Aligned_cols=266 Identities=8% Similarity=-0.052 Sum_probs=223.1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI 538 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 538 (767)
.+...+..++..+...|++++|...|+++.+..+ .+...+..+..++...|++++|...++++.... +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 3556678889999999999999999999988743 377888899999999999999999999999874 23667888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL--------------MT-WSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
..+...|++++|...++++.+.. +.+...+..+ .. ++...|++++|...++++++..|.++.++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 99999999999999999998753 2233333333 33 37788999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++.++..++.+|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998432 358888889999999999999999999999999987 77899999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTLKNGFILR-------------PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
|++++|...++++++.. |+ +..+..+...+. ..|+ +++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLN-VMNR-PDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHH-HTTC-HHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHH-hcCC-HHHHHHHHHHH
Confidence 99999999999998754 55 334444555555 8888 99999887753
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.8e-18 Score=166.18 Aligned_cols=275 Identities=10% Similarity=-0.021 Sum_probs=212.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHH
Q 047305 386 CGMCRNGMVDDAQKLFNKMEKAGCFPSV--GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKAS 463 (767)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (767)
......|++..|+..++...... |+. .....+..+|...|++++|+..++. ..+++...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------------~~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------------SSAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------------TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------------cCChhHHH
Confidence 34456788888888887654432 332 3445667888888998888865532 13356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 464 LQTMVEQYCTAGLIHKAYKILMQLAESGNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
+..++..+...++.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 7788888888899999999999988765434 566677778899999999999999987 346778888999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAV---YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
+.|++++|...++++.+.. |+... ...++..+...|++++|..+|+++++..|+++.+++.++.++.+.|++++|
T Consensus 142 ~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998753 44321 123345555669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH-HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE-ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
...+.+... .+|+++.++..++.++...|+.++ |.++++++++.+ |.++.+. +...+.+.++++..-|
T Consensus 220 ~~~l~~al~-~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 220 EGVLQEALD-KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHHHc
Confidence 999998322 359999999999999999999976 568999999887 6666554 3456666666665544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=2e-18 Score=173.99 Aligned_cols=266 Identities=10% Similarity=-0.078 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL 493 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (767)
..+..+...+...|++++|..+|+++.. ..+.+...+..++..+...|++++|...++++.+.. +
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--------------AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c
Confidence 4566778889999999999999999852 234467788889999999999999999999998874 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHhh
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL--------------IN-GLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~ 558 (767)
.+...+..+..++...|++++|+..++++...... +...+..+ .. .+...|++++|..+++++.
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 36788899999999999999999999999987422 22333333 22 3778899999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 559 QNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
+.. +.+..++..++.++...|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++
T Consensus 166 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~ 243 (327)
T 3cv0_A 166 EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD-INPGYVRVM 243 (327)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHH
Confidence 864 457888999999999999999999999999999999999999999999999999999999988432 358888889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCC------------ChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIV------------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..++.+|...|++++|+..++++++.. |. ++.++..++.++...|++++|..+++++++
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998876 44 578999999999999999999999886543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=175.84 Aligned_cols=382 Identities=10% Similarity=-0.069 Sum_probs=181.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 047305 273 LGSYSCLIDGLFRAKRYDEAYAWYRKMFEE--------KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-----G- 338 (767)
Q Consensus 273 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 338 (767)
...|+.|...+...|++++|++.|++.++. .......+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445667777777777777777777665432 01113456666777777777777777766665432 0
Q ss_pred CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 339 IVP-DTYCYNALIKGFCD--LGLLDQARSLQVEIWKRDSLPNTHTFTILICG---MCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 339 ~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
..+ ...++.....++.. .+++++|...|+.+++..+ .+...+..+... +...++.++|+..+++..+.+.. +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 011 23344444433333 2346666666666665543 233333333333 23345555566666655554322 3
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 413 VGMFNALIDGLCKA----GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLA 488 (767)
Q Consensus 413 ~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (767)
..++..+...+... +++++|...+++.. ...+....++..++..+...|++++|...++++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--------------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHH--------------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 44444444444332 33444444444442 1223333444444444444444444444444444
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhh
Q 047305 489 ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAV 568 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 568 (767)
+..+ .+..++..+..+|...+.... ... ...........+.++.|...++++.+.. +.+...
T Consensus 275 ~~~p-~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 275 EYIP-NNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HHST-TCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HhCC-ChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 3321 123333333333321110000 000 0000000111223456666666666543 334556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc---hHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE---SMKSIEE-FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+..++.+|...|++++|++.|+++++..|++... +..++.. +...|++++|+..+.+.. ...|.+..
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal-~i~~~~~~-------- 407 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV-KINQKSRE-------- 407 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HSCCCCHH--------
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCcccHH--------
Confidence 6667777777777777777777777666554432 2333332 345677777777766621 12344422
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
..+....+..++++.++.+ |.++.++..+|.+|...|++++|++.|+++++.+
T Consensus 408 --~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 408 --KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp --HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred --HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122344555666666665 6777778888888888888888888888887644
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=2e-17 Score=154.56 Aligned_cols=196 Identities=15% Similarity=0.030 Sum_probs=96.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
+...+..+...+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++..|.++.++..++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444555555555555555555555555432 33444555555555555555555555555555555555555555555
Q ss_pred HHhc-----------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 610 FLQK-----------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 610 ~~~~-----------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+... |++++|+..+.+... ..|+++.++..++.+|...|++++|+..|+++++.+ .++.++..++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER-VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 555555555555211 235555555555555555555555555555555554 45555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 679 GLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|...|++++|+..|+++++.. |+.......+..++...|+ +++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGK-AEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccC-HHHHHHHHHH
Confidence 5555555555555555555432 4433333333333324554 5555555544
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.9e-17 Score=162.89 Aligned_cols=307 Identities=9% Similarity=0.070 Sum_probs=151.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
+.|++++|.++++++. ++.+|..++.++.+.|++++|.+.|... +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999882 3458999999999999999999999653 577789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHH
Q 047305 400 LFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (767)
+++..++. .+++.+.+.++.+|.+.|+++++.++++. ++...+..++..|...|.+++
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------------------pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------------------PNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ----------------------------CHHHHTTTTTC--------------------C----------------CTTT
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------CcHHHHHHHHHHHHHcCCHHH
Confidence 88887764 35678889999999999999998876631 344589999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
|...|.++ ..|..++.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|......+
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 99999976 37899999999999999999999998 27889999999999999999996655543
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh--cCCHHHHHHHHHH-hhhcCCC----
Q 047305 560 NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ--KGEVENAIQGLLE-MDFKLND---- 632 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~-~~~~~~p---- 632 (767)
...+.....++..|.+.|++++|+.+++..+...+.....+..++.+|.+ -++..+.++.+.. +. ..|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~ 278 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRA 278 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHH
Confidence 23444466788999999999999999999999998888888888888876 4556666666554 22 235
Q ss_pred -CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 047305 633 -FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 633 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 687 (767)
.++..|..++..|.+.++++.|.. .|.+. +++..--..+-++..+-.+.+
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 567789999999999999999987 44443 333223333444444444443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.8e-17 Score=154.92 Aligned_cols=199 Identities=14% Similarity=-0.020 Sum_probs=154.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
++...+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|+..++++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566777777788888888888888888766322 45677777788888888888888888887753 44566777777
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 574 TWSCRR-----------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 574 ~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
.++.+. |++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.... . +++.++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c-cchHHHHHHH
Confidence 888888 99999999999999999999999999999999999999999999994332 2 6778899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.+|...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..++++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999987 8889999999999999999999999998763
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.7e-17 Score=157.52 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhh
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLR--PD----SVT 533 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~ 533 (767)
....+..++..+...|++++|...|+++.+.. .+...|..+..++...|++++|+..++++...... |+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34577788999999999999999999998886 67888999999999999999999999999875321 12 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+..+..++...|++++|...++++.+. .|+. ..+.+.|++++|...++++++..|.++.++..++.++...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 888999999999999999999999874 3443 3466778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++..++.+|...|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIK-RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998432 358888889999999999999999999999999987 788999999999999999999999999
Q ss_pred HHHHHC
Q 047305 694 LYTLKN 699 (767)
Q Consensus 694 ~~~~~~ 699 (767)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=1.5e-16 Score=160.57 Aligned_cols=251 Identities=10% Similarity=0.017 Sum_probs=210.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGN-INGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
+.+..++..+...+...|++++|+..++++++..+ .+...|+.+..++...|+ +++|+..|++++..... +...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 34567888899999999999999999999998753 367889999999999997 99999999999987543 6678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh-cCC
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ-KGE 615 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~ 615 (767)
+..++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++++.+|.+..+++.++.++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999864 55788899999999999999999999999999999999999999999999 666
Q ss_pred HHHHH-----HHHHHhhhcCCCCCccchHHHHHHHhhcC--CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----
Q 047305 616 VENAI-----QGLLEMDFKLNDFQLAPYTIWLIGLCQDG--QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG---- 684 (767)
Q Consensus 616 ~~~A~-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 684 (767)
.++|+ ..+.+.. ..+|++..+|+.++.+|...| ++++|++.++++ +.+ +.++.++..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al-~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMI-KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 57773 5566522 246999999999999999988 699999999998 665 778899999999999874
Q ss_pred -----ChhHHHHHHHHH-HHCCCCCCHH-HHHHHHHHHh
Q 047305 685 -----YLDLAMDVFLYT-LKNGFILRPR-VCNYLLRSLL 716 (767)
Q Consensus 685 -----~~~~A~~~~~~~-~~~~~~~~~~-~~~~l~~~l~ 716 (767)
.+++|+.+|+++ ++. .|... .|.++...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 653 36543 3444444443
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.6e-16 Score=153.59 Aligned_cols=246 Identities=11% Similarity=-0.011 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD--SVTYGTLIN 539 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 539 (767)
..+...+..+...|++++|...|+++.+..+ .+...+..+..+|...|++++|+..++++......|+ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566677777777777777777776632 2445667777777777777777777777776321111 123667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
.+...|++++|+..++++.+.. +.+..++..++.+|...|++++|+..|+++++..|.++.++..++......+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 334566777777777777777777777777777777777777777333344577777
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCC-CCC------hHhHHHHHHHHHhcCChhHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKA-IVT------PPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A 689 (767)
++.+.+... ..|.++..+..++.++...|+ +++|+..++++++... .|+ ..++..++.+|...|++++|
T Consensus 162 ~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLE-LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH-HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776322 246666667777777777776 7777777777754320 122 14566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
..+|+++++.. |+.......+
T Consensus 241 ~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHhcC--ccHHHHHHHh
Confidence 77777777643 6655444433
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=3.4e-16 Score=158.12 Aligned_cols=251 Identities=8% Similarity=0.015 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL-IHKAYKILMQLAESG 491 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 491 (767)
...|..+...+...|++++|+..++++. ...+.+..++..+..++...|+ +++|+..|+++++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al--------------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAI--------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH--------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH--------------HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 4567888888999999999999999986 2345677899999999999997 999999999999885
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS 571 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 571 (767)
+. +...|..+..++...|++++|+..|++++..... +...|..+..++...|++++|+..++++++.+ +.+...|..
T Consensus 163 P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~ 239 (382)
T 2h6f_A 163 PK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 239 (382)
T ss_dssp TT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 43 7889999999999999999999999999988543 67789999999999999999999999999864 456788999
Q ss_pred HHHHHHh-cCChhHH-----HHHHHHHHhccCCCccchHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 572 LMTWSCR-RRKFSLA-----FSLWLQYLRDISGRDDESMKSIEEFLQKG--EVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 572 l~~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
+..++.+ .|..++| ++.|+++++..|.+..+++.++.++...| ++++|++.+.++ ...|+++.++..++.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~ 317 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVD 317 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHH
Confidence 9999988 5665888 59999999999999999999999999988 689999988887 567999999999999
Q ss_pred HHhhcC---------CHHHHHHHHHHH-HHcCCCCChHhHHHHHHHHHhc
Q 047305 644 GLCQDG---------QVKEALNIFSVL-VECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 644 ~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
+|.+.| .+++|+++|+++ .+.+ |.....|..++..+...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 999874 369999999999 8887 77777888777766543
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.9e-16 Score=148.11 Aligned_cols=225 Identities=8% Similarity=0.000 Sum_probs=193.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HhhH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC--TPS----PAVY 569 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 569 (767)
...|..+...+...|++++|+..++++.... .+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999887 6888999999999999999999999999987421 112 5788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
..++.++...|++++|...|+++++..|. +..+...|++++|+..+.+... ..|.++.++..++.++...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAY-VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998776 4667888999999998888532 35888888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCccHHHHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDNKKVHAYH 728 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~a~~ 728 (767)
++++|+..++++++.. |.++.++..++.+|...|++++|+..++++++.. |+.. .+..+...+. ..|+ +++|..
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~-~~g~-~~~A~~ 228 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI-AVKE-YASALE 228 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-HHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHH-HHhh-HHHHHH
Confidence 9999999999999987 7889999999999999999999999999999865 6644 4444555555 8888 999999
Q ss_pred HHHHHHHc
Q 047305 729 LLCRMKSV 736 (767)
Q Consensus 729 ~~~~~~~~ 736 (767)
.+++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998754
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=2e-15 Score=147.23 Aligned_cols=242 Identities=13% Similarity=-0.023 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMT 574 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 574 (767)
..+......+...|++++|+..++++.+.... +...+..+..++...|++++|+..++++.+....++ ...+..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566778889999999999999999987432 455888999999999999999999999988431221 334888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
++...|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++..+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-PTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-SSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988432 3688999999999555556699999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhhcCCccHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGY---LDLAMDVFLYTLKNG-FILRP------RVCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~------~~~~~l~~~l~~~~~~~~~ 724 (767)
+..++++++.. |.++..+..++.++...|+ +++|...|+++++.. -.|++ ..+..+...+. ..|+ ++
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~ 238 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT-INRD-KV 238 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH-HTTC-HH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HcCC-HH
Confidence 99999999987 7778999999999999999 899999999998742 11332 23333444444 7888 99
Q ss_pred HHHHHHHHHHHcCCCCCCcch
Q 047305 725 HAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 725 ~a~~~~~~~~~~~~~~~~~~~ 745 (767)
+|...+++..+. .|+....
T Consensus 239 ~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHhc--CccHHHH
Confidence 999999999876 4665543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=5.1e-16 Score=148.63 Aligned_cols=214 Identities=13% Similarity=0.073 Sum_probs=159.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
....|..+...+...|++++|+..|+++..... .+...+..+...+...|++++|+..++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 445667777778888888888888888887532 256677788888888888999998888887753 446778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
++...|++++|.+.|+++++..|.++.++..++..+...|++++|+..+.+... ..|.++..+..++.+|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999999998898888888899999999999999888888432 2477788899999999999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
+..++++.+.. +.++.++..++.+|...|++++|...++++++.. |+.......+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHTC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHHH
Confidence 99999998886 7778899999999999999999999999998754 666554444433
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=2.1e-14 Score=139.96 Aligned_cols=225 Identities=13% Similarity=-0.022 Sum_probs=189.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
.++..+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35667778888899999999999999998873 356778888888888 999999999999998875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 535 GTLINGLQR----VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 535 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
..+...|.. .+++++|+..|+++.+.+ +...+..+..+|.. .+++++|+..|+++++.. ++.++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 888888988 999999999999998864 67788888888888 899999999999999865 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 607 IEEFLQ----KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 607 ~~~~~~----~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+..|.. .+++++|+..+.+.... .++.++..++.+|.. .+++++|+..|+++.+.+ + +.++..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~--~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-N--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-C--HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-C--HHHHHHHHH
Confidence 888888 89999999888884322 345668899999999 899999999999998875 2 678888999
Q ss_pred HHHh----cCChhHHHHHHHHHHHCC
Q 047305 679 GLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 679 ~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
+|.. .+++++|...|+++++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 899999999999998865
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.9e-15 Score=156.69 Aligned_cols=218 Identities=11% Similarity=0.014 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 498 TYNSLINGFCKVG---NINGALKLFKELQLKGLRPDSVTYGTLINGLQRV----DREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 498 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
.+..+...|...| +.++|+..|+...+.| .++...+..+...|... +++++|+..|++.. +.++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 5566666666667 6777777777777665 23444445555555443 57777777777766 23444555
Q ss_pred HHHHH-H--HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-----CHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 571 SLMTW-S--CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-----EVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 571 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
.+..+ + ...+++++|...|+++.+. .++.+.+.++..|. .| ++++|++.+.+.. |.++.++..|+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 55555 3 4567777787777777754 36677777777776 44 7778877777654 55666788888
Q ss_pred HHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 643 IGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 643 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
.+|.. ..++++|+.+|+++.+.| ++.+...|+.+|.. ..+.++|...|+++.+.| ++. ....+..
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g---~~~-a~~~l~~ 398 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD---TPE-ANDLATQ 398 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC---CHH-HHHHHHH
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC---CHH-HHHHHHH
Confidence 77776 348888888888887765 34566777877774 457888888888887765 222 2222222
Q ss_pred Hhh--cCCccHHHHHHHHHHHHH
Q 047305 715 LLF--SKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 715 l~~--~~~~~~~~a~~~~~~~~~ 735 (767)
+.. ..++ ..+|..+.++-+.
T Consensus 399 l~~~~~~~~-~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 399 LEAPLTPAQ-RAEGQRLVQQELA 420 (452)
T ss_dssp HHTTCCHHH-HHHHHHHHHHHHH
T ss_pred HHHhCCHHH-HHHHHHHHHHHHH
Confidence 221 2223 6677777776553
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3.3e-15 Score=143.85 Aligned_cols=206 Identities=13% Similarity=-0.061 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
..|..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445556666666666666776666666553 1244556666666666777777777776666542 33455666666667
Q ss_pred HhcCChhHHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
...|++++|.+.|+++++ ..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766 5555666666677777777777777766666322 2366666677777777777888888
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
+..++++.+.. +.++..+..++.++...|++++|..+++++++.. |+....
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 88888777765 6667777777777777888888888888777644 554443
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=1.1e-15 Score=159.99 Aligned_cols=352 Identities=14% Similarity=0.021 Sum_probs=219.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 314 MIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLL---DQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
+...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|...++...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566666666666666665554 222333444444555555 5666666555533 22334444443333
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHH
Q 047305 391 NG-----MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQ 465 (767)
Q Consensus 391 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (767)
.| ++++|...|++..+.|.. ..+..+...|...+..+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~--------------------------------- 125 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN--------------------------------- 125 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT---------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC---------------------------------
Confidence 33 455566666555554322 1334444444433322111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
.++.+.+......+ +...+..+...|...+.++++......+.+.-...+...+..+...|...|
T Consensus 126 ------------~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 126 ------------VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp ------------CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 12344444444443 345666777778877755555444333332222234447888889999999
Q ss_pred ---CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHhccCCCccchHHHHHH-H--HhcCC
Q 047305 546 ---REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR----RKFSLAFSLWLQYLRDISGRDDESMKSIEE-F--LQKGE 615 (767)
Q Consensus 546 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~--~~~g~ 615 (767)
+.++|+..|++..+.| +++...+..+..+|... +++++|...|+++. |.++.++..++.. + ...|+
T Consensus 191 ~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC
T ss_pred CcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999877 56666656777777655 79999999999988 8999999999998 4 56899
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC-----CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCh
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG-----QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYL 686 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 686 (767)
+++|+..+.+... +.++.++..|+.+|. .| ++++|+.+|+++. +.++.+...|+.+|.. ..++
T Consensus 267 ~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 267 VEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999998542 456778999999998 55 9999999999998 4567889999988887 4499
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCC
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKD--NKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~a~~~~~~~~~~~~ 738 (767)
++|...|+++.+.| ++.....+...+....| .+..+|..++++..+.|.
T Consensus 339 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 339 QKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998765 33344445444442222 238899999999888775
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=5e-15 Score=139.70 Aligned_cols=200 Identities=10% Similarity=-0.059 Sum_probs=107.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+...+..++..+...|++++|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344555555666666666666666666655421 134455555555566666666666666655432 234445555555
Q ss_pred HHHhc-CChhHHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 575 WSCRR-RKFSLAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
++... |++++|...++++++ ..|.+..++..++.++...|++++|+..+.+... ..|.++..+..++.+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA-AQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCH
Confidence 55556 666666666666555 3333344455555555555555555555555221 1344455555555555555555
Q ss_pred HHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 652 KEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++|+..++++++.. | .++..+..++.++...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555543 3 4445555555555555555555555555543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=8.7e-15 Score=138.04 Aligned_cols=199 Identities=11% Similarity=-0.099 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.|+++++..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345555555666666666666666655532 3345555555566666666666666666666666666666666666666
Q ss_pred hc-CCHHHHHHHHHHhhh-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 612 QK-GEVENAIQGLLEMDF-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 612 ~~-g~~~~A~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
.. |++++|+..+.+... ...|.+..++..++.++...|++++|+..++++.+.. |.++.++..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 666666665555321 1223344555666666666666666666666665554 44555666666666666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFIL-RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 690 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
...++++++.. | +......++..+....|+ .++|..+++.+..
T Consensus 167 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRV--EVLQADDLLLGWKIAKALGN-AQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 66666665533 3 333333333333334554 5666666655543
No 50
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=168.28 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 047305 131 PDVYIYNAVLNIAFRKQLFLLALAVYYEMVK---LNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYT 207 (767)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 207 (767)
-...+|++||++|++.|++++|.++|.+|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3445788888888888888888888877754 4678888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------cccHHHHH
Q 047305 208 IVISGLCQINR-ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPR------LGSYSCLI 280 (767)
Q Consensus 208 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li 280 (767)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888887 467888888888888888888888887665443 333333333 2233333 44555666
Q ss_pred HHHHhcC
Q 047305 281 DGLFRAK 287 (767)
Q Consensus 281 ~~~~~~~ 287 (767)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=4.6e-15 Score=134.81 Aligned_cols=167 Identities=12% Similarity=0.012 Sum_probs=140.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
+...|..+..++...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|...+.+++...|.++.++..++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 55678888888888888888888888888753 44677888888888888888999888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
+...++++.|...+.+... ..|.++.++..++.+|...|++++|++.|+++++.+ |.++.++..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA-LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888888888777432 358888888999999999999999999999998887 78888899999999999999999
Q ss_pred HHHHHHHHHC
Q 047305 690 MDVFLYTLKN 699 (767)
Q Consensus 690 ~~~~~~~~~~ 699 (767)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=8.4e-15 Score=140.96 Aligned_cols=210 Identities=15% Similarity=-0.013 Sum_probs=179.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
...+..+...+...|++++|...++++.+.. +.+...+..++.+|...|++++|.+.|+++++..|.+..++..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3567788889999999999999999998763 456788899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhh-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLEMDF-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
...|++++|++.+.+... ...|.++.++..++.+|...|++++|+..++++.+.. +.++.++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998533 2357777889999999999999999999999999987 77889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
...++++++.. |+.......+..++...|+ +++|...++++.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFED-RDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH--CCCCHHHHH
Confidence 99999998743 6655544444444447888 99999999999875 465554433
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=3.9e-15 Score=145.51 Aligned_cols=219 Identities=12% Similarity=-0.101 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGNL---PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
|++++|+..++++.+.... .+...+..++.++...|++++|+..|+++..... .+..++..++.++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444433111 1233444445555555555555555555554421 13444555555555555555555
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
..++++++.. +.+..++..++.+|.+.|++++|...|+++++..|.++....... .+...|++++|+..+.+.... .
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc-C
Confidence 5555555432 223444555555555555555555555555555555443332222 223345555555555442211 2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI---VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|.+.. ...++..+...++.++|+..++++.+.... .++.++..++.+|...|++++|...|+++++
T Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333 223444455555555555555555443210 1134555555555555555555555555554
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=2.6e-15 Score=143.64 Aligned_cols=218 Identities=11% Similarity=0.033 Sum_probs=171.5
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI 538 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 538 (767)
.....+..++..+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++..... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 455677788889999999999999999998764 33678888999999999999999999999998742 3667888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
..+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...++++++..|.++.++..++.++...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998864 45778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++.++..++.+..
T Consensus 178 A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 178 ALSQFAAVTE-QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC---
T ss_pred HHHHHHHHHH-hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHh
Confidence 9999988432 358888889999999999999999999999999987 777777766654433
No 55
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=167.73 Aligned_cols=151 Identities=12% Similarity=0.123 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 97 VSDVFFVLISGYYKVGDCEKALESFGKMK---EFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSL 173 (767)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 173 (767)
.-.+|+++|.+|++.|+.++|.++|+.|. ..|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44789999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 047305 174 LINGLSKSGKT-EVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPD------FVAYNALLN 246 (767)
Q Consensus 174 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 246 (767)
+|.++|+.|+. +.|.++|++|.+.|+.||..+|++++....+ +.+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 7899999999999999999999999876544 3455555555 3345544 455666777
Q ss_pred HHHhcC
Q 047305 247 GFCKLR 252 (767)
Q Consensus 247 ~~~~~~ 252 (767)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=8.9e-15 Score=154.05 Aligned_cols=213 Identities=9% Similarity=-0.102 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNI-NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
++++...+++..... +.+...+..+..++...|++ ++|+..|+++.+.... +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466667777665542 34677888889999999999 9999999999887422 46788999999999999999999999
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhc--------CCHHH
Q 047305 556 QMPQNGCTPSPAVYKSLMTWSCRR---------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK--------GEVEN 618 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~~ 618 (767)
++++. .|+...+..+..+|... |++++|+..|+++++..|.++.++..++.+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99875 46678888899999998 9999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhhcCCC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 619 AIQGLLEMDFKLND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 619 A~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
|+..+.+... ..| .++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.++...|++++|++.+++
T Consensus 240 A~~~~~~al~-~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEK-VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH-HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988432 257 888889999999999999999999999999987 78888999999999999999999886644
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2.7e-13 Score=132.08 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=196.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQL 487 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 487 (767)
++.++..+...+...|++++|...|++... +.+...+..+...+.. .+++++|...|++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 667888888999999999999999998852 3455678889999999 99999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 047305 488 AESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR----VDREEDAFRIFGQMPQ 559 (767)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 559 (767)
.+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..++++.+
T Consensus 69 ~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 69 CDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 8875 67888889999999 999999999999999874 67788899999998 9999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCC
Q 047305 560 NGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (767)
.+ +...+..+..+|.. .+++++|...|+++++. .++.++..++.+|.. .+++++|+..+.+....
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 215 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-- 215 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--
Confidence 65 56777788888888 89999999999999976 457888899999999 99999999999884332
Q ss_pred CCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Q 047305 632 DFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 665 (767)
.++.++..++.+|.. .+++++|+++|+++.+.+
T Consensus 216 -~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 -ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 225679999999999 999999999999999987
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.6e-14 Score=150.18 Aligned_cols=278 Identities=13% Similarity=0.037 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhh
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS----VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRL 451 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 451 (767)
.....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~--- 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----A--- 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H---
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----H---
Confidence 34555666677777888888888888887776432 3 246677777888888888888888775310 0
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCC---------------
Q 047305 452 SQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-PD----IITYNSLINGFCKVGN--------------- 511 (767)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------- 511 (767)
......+....++..++..+...|++++|...++++.+.... ++ ..++..+...|...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 000112233445666677777777777777777666543110 11 2355566666666776
Q ss_pred -----HHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHH
Q 047305 512 -----INGALKLFKELQLK----GLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPS----PAVYKSLMTWS 576 (767)
Q Consensus 512 -----~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 576 (767)
+++|+..+++.... +..|. ..++..+...+...|++++|...++++.+... .++ ..++..++.+|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666655432 10111 12455555566666666666666666543200 011 22455555556
Q ss_pred HhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHHh-hhcC----CCCCccchHHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLEM-DFKL----NDFQLAPYTIWLIGL 645 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~p~~~~~~~~l~~~~ 645 (767)
...|++++|...++++++..|.. ..++..++.+|...|++++|+..+.+. .... .+....++..++.+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666666666655443332 223344455555555555554444441 1100 011122344555555
Q ss_pred hhcCCHHHHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLV 662 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~ 662 (767)
...|++++|+..+++++
T Consensus 318 ~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=6e-15 Score=153.68 Aligned_cols=277 Identities=14% Similarity=0.042 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES--- 490 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 490 (767)
..+..+...+...|++++|+..|+++.... | .........+..++..+...|++++|...++++.+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-T---------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-c---------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345556778889999999999999885210 0 000111257788899999999999999999987653
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC-----------------
Q 047305 491 -GN-LPDIITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSVTYGTLINGLQRVDR----------------- 546 (767)
Q Consensus 491 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~----------------- 546 (767)
+. ......+..+...|...|++++|+..++++... +-.| ...++..+...+...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 11 123456778888999999999999999988754 1111 23467788888999999
Q ss_pred HHHHHHHHHHhhhC----CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHhcCC
Q 047305 547 EEDAFRIFGQMPQN----GC-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQKGE 615 (767)
Q Consensus 547 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~ 615 (767)
+++|+..+++..+. +. .....++..+..+|...|++++|...|+++++..|.... ++..++.+|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 99999998887652 11 112447778888899999999999999999987766554 77788999999999
Q ss_pred HHHHHHHHHHh-hhc--C--CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCC
Q 047305 616 VENAIQGLLEM-DFK--L--NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 616 ~~~A~~~~~~~-~~~--~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~ 685 (767)
+++|+..+.+. ... . .+....++..++.+|...|++++|+.+++++++... .....++..++.+|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 99998888873 211 0 011245688999999999999999999999875421 1124478889999999999
Q ss_pred hhHHHHHHHHHHHCC
Q 047305 686 LDLAMDVFLYTLKNG 700 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~ 700 (767)
+++|..+++++++..
T Consensus 359 ~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 359 HERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998743
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=150.64 Aligned_cols=279 Identities=14% Similarity=0.003 Sum_probs=214.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
.....+......+...|++++|...|+++.... | .........+..++..+...|++++|...++++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-T---------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c---------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456677788889999999999999999985211 0 111112457888999999999999999999987543
Q ss_pred ----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCC--------------
Q 047305 491 ----GNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD----SVTYGTLINGLQRVDR-------------- 546 (767)
Q Consensus 491 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~-------------- 546 (767)
+..| ....+..+...|...|++++|+..+++....... ++ ..++..+...+...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 1111 2456778889999999999999999988764110 12 3367888889999999
Q ss_pred ------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHH
Q 047305 547 ------EEDAFRIFGQMPQN----GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEE 609 (767)
Q Consensus 547 ------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~ 609 (767)
+++|...+++..+. +..+ ...++..++.+|...|++++|...++++++..|.... ++..++.+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999887652 1111 2457778888999999999999999999987666555 77889999
Q ss_pred HHhcCCHHHHHHHHHHh-hhcC-CC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-----CChHhHHHHHHH
Q 047305 610 FLQKGEVENAIQGLLEM-DFKL-ND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI-----VTPPSCVKLIHG 679 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~-~~~~-~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~ 679 (767)
|...|++++|+..+.+. .... .+ ....++..++.+|...|++++|+..++++++.... ....++..++.+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999998883 2110 11 11456889999999999999999999999764211 115678899999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 047305 680 LCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~ 699 (767)
|...|++++|..+++++++.
T Consensus 317 ~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=4.4e-14 Score=128.32 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=148.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+..+|..++.+|.+.|++++|++.|+++++.+|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999988532 35888888999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCcc
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNK 722 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~ 722 (767)
.+...+++++|...++++.+.. |.++.++..++.+|...|++++|+..|+++++.. |+... +..+...+. ..|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~-~~g~- 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYE-GKGL- 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHH-HCCC-
Confidence 9999999999999999999987 8889999999999999999999999999999854 66554 444555554 8888
Q ss_pred HHHHHHHHHHHHHc
Q 047305 723 KVHAYHLLCRMKSV 736 (767)
Q Consensus 723 ~~~a~~~~~~~~~~ 736 (767)
+++|...+++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.3e-14 Score=149.24 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-D 530 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 530 (767)
....+..++..+...|++++|...|+++.+.... +. ..|..+..+|...|++++|+..++++... +..| .
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445556788899999999999999999887433 33 46788889999999999999999988753 1111 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQN----G-CTPSPAVYKSLMTWSCRRRK-----------------FSLAFSL 588 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 588 (767)
...+..+...|...|++++|...++++.+. + .+....++..+..+|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 356788889999999999999999998763 1 12235577888889999999 9999999
Q ss_pred HHHHHhcc------CCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCc------cchHHHHHHHhhcCCHHHHH
Q 047305 589 WLQYLRDI------SGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQL------APYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 589 ~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 655 (767)
++++++.. +....++..++.+|...|++++|+..+.+. ... |... .++..++.+|...|++++|+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99988543 223346778899999999999999998883 221 2222 26899999999999999999
Q ss_pred HHHHHHHHcCCCC------ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCccHHH
Q 047305 656 NIFSVLVECKAIV------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF----ILRPRVCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 656 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~ 725 (767)
..++++++.. +. ...++..++.+|...|++++|..+++++++... .+........+..++...|+ +++
T Consensus 284 ~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~ 361 (411)
T 4a1s_A 284 EHYKRTLALA-VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-HER 361 (411)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-HHH
Confidence 9999997653 21 156788999999999999999999999986421 11111122333334448888 999
Q ss_pred HHHHHHHHHHc
Q 047305 726 AYHLLCRMKSV 736 (767)
Q Consensus 726 a~~~~~~~~~~ 736 (767)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997743
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=3.6e-14 Score=143.25 Aligned_cols=275 Identities=14% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPS----VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
+......+...|++++|+..++++.+.... + ...+..+...+...|++++|...+++.... .. ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~---~~~~ 78 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----AR---TIGD 78 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HH---HHTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hh---cccc
Confidence 444556677778888888888887775422 3 345667777777788888888777665300 00 0000
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----h
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD----S 531 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 531 (767)
.+... ..+..+...+...|++++|...+++...... .++ .
T Consensus 79 ~~~~~-----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 79 QLGEA-----------------------------------KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHH-----------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 11112 2344444455555555555555554443210 001 1
Q ss_pred hhHHHHHHHHHhcCC--------------------HHHHHHHHHHhhhC----CC-CCCHhhHHHHHHHHHhcCChhHHH
Q 047305 532 VTYGTLINGLQRVDR--------------------EEDAFRIFGQMPQN----GC-TPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
.++..+...+...|+ +++|...+++..+. +. .....++..+..++...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 244455555555555 56666555554331 11 112335556666677777777777
Q ss_pred HHHHHHHhccCCCcc------chHHHHHHHHhcCCHHHHHHHHHHh-hhc--C--CCCCccchHHHHHHHhhcCCHHHHH
Q 047305 587 SLWLQYLRDISGRDD------ESMKSIEEFLQKGEVENAIQGLLEM-DFK--L--NDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~--~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
..++++++..+.... ++..++.++...|++++|+..+.+. ... . .+....++..++.+|...|++++|+
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777755443332 5556677777777777776666662 111 0 0111445778888888889999998
Q ss_pred HHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 656 NIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 656 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
..++++++... +....++..++.+|...|++++|..+++++++.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888865421 111446778888888899999999998888764
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=9.2e-14 Score=135.65 Aligned_cols=244 Identities=10% Similarity=-0.080 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047305 357 GLLDQARSLQVEIWKRDSL---PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKAN 433 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 433 (767)
|++++|...++.+.+.... .+..++..+...+...|++++|...|+++.+.... +..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555544211 12344555555555555666666555555554321 4455555555555555555555
Q ss_pred HHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 434 LLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
..|+++.. ..+.+...+..++..+...|++++|...++++.+.. |+.......+..+...|+++
T Consensus 98 ~~~~~al~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (275)
T 1xnf_A 98 EAFDSVLE--------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEK 161 (275)
T ss_dssp HHHHHHHH--------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHh--------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHH
Confidence 55555431 011123334444444444444444444444444432 22222222222334445566
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWL 590 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (767)
+|...+++..... .++... ..++..+...++.++|...+.++.+..... +..++..++.+|.+.|++++|...|+
T Consensus 162 ~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 162 QAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666655554432 112222 224444455555555555555554321100 13444555555555555555555555
Q ss_pred HHHhccCCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 591 QYLRDISGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
++++..|.+.. ..+.++...|++++|++.
T Consensus 240 ~al~~~p~~~~---~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 240 LAVANNVHNFV---EHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHTTCCTTCH---HHHHHHHHHHHHHHC---
T ss_pred HHHhCCchhHH---HHHHHHHHHHHHHhhHHH
Confidence 55555444322 223344444555544433
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=7.7e-14 Score=143.47 Aligned_cols=230 Identities=7% Similarity=-0.006 Sum_probs=123.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----hhhHH
Q 047305 467 MVEQYCTAGLIHKAYKILMQLAES----GNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD-----SVTYG 535 (767)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~ 535 (767)
.+..+...|++++|...++++.+. +..+ ...++..+..+|...|++++|+..+++..+... .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566667777777777766543 1111 124556666666677777777777666654210 011 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----cc-CCCccchH
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQN----GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-----DI-SGRDDESM 604 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-p~~~~~~~ 604 (767)
.+..+|...|++++|...++++++. +..+ ...++..++.+|...|++++|...|+++++ .. |....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666666666666666666666542 1000 123555566666666666666666666665 33 44444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-hhhc---CCCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLE-MDFK---LNDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~-~~~~---~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.++.+|...|++++|...+.+ +... .+|.....+..++.+|...|+ +++|+.++++.. ..+....++..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 666666666666666555555 2110 112222224455556666665 555555555541 1122233455566
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047305 678 HGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|...|++++|..+|+++++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665544
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=2.6e-14 Score=150.48 Aligned_cols=214 Identities=8% Similarity=-0.065 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE-EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLW 589 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (767)
.+++++..+++..... ..+...+..+..++...|++ ++|+..|+++++.. +.+...+..++.+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667777887766542 23667888999999999999 99999999998864 446889999999999999999999999
Q ss_pred HHHHhccCCCccchHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc--------CCHH
Q 047305 590 LQYLRDISGRDDESMKSIEEFLQK---------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD--------GQVK 652 (767)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~ 652 (767)
+++++..|. ..++..++.++... |++++|+..+.+... ..|.++.+|..++.+|... |+++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999999998 68889999999999 999999999998432 3599999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHH
Q 047305 653 EALNIFSVLVECKAI---VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHL 729 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~ 729 (767)
+|+..|+++++.+ | .++.++..++.+|...|++++|+..|+++++.. |+.......+..++...|+ +++|...
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~-~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSR-LTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999987 6 789999999999999999999999999999854 7765544444444436666 7777765
Q ss_pred HHH
Q 047305 730 LCR 732 (767)
Q Consensus 730 ~~~ 732 (767)
+++
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 443
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=2.4e-11 Score=130.98 Aligned_cols=442 Identities=12% Similarity=0.052 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 047305 185 EVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRR---VDEALALL 261 (767)
Q Consensus 185 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 261 (767)
.+-...|++.+..+. -|..+|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334445555555543 37888888888888888888888888888876 45566677777777777777 88888888
Q ss_pred HHHHhCCC-CCCcccHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh---------
Q 047305 262 RSFEKDGF-VPRLGSYSCLIDGLFRAKRY--------DEAYAWYRKMFE-EKI-EPD-VVLYGVMIRGLSE--------- 320 (767)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 320 (767)
++.+.... .|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88877531 35666777766655554432 334466666554 244 443 4567766665432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (767)
.++++.+..+|+.+.......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 33456677777777642111111222221111100000 001111111 01122333343
Q ss_pred HHHHHHc--CCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHhhcCCCchhh
Q 047305 401 FNKMEKA--GCF---------------P-----S---VGMFNALIDGLCKAG-------ELEKANLLFYKMEIGKNPTLF 448 (767)
Q Consensus 401 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~ 448 (767)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-------- 336 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-------- 336 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--------
Confidence 4332210 110 1 0 123444443222211 0122344555553
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 449 LRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
...+..+..|...+..+...|+.++|. .+|++..... +.+...|...+......|++++|..+|+.+.....
T Consensus 337 ------~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 337 ------QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp ------HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 224456777778888888888888886 8888887653 34556677777777788888888888888875310
Q ss_pred ---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-CChhHH
Q 047305 528 ---------RPD------------SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-RKFSLA 585 (767)
Q Consensus 528 ---------~p~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A 585 (767)
.|+ ...|...++...+.|..+.|+.+|.++++.-......+|...+..-.+. ++.+.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 132 2356667777777788888888888887641122334444444433344 447888
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-C-CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN-D-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
..+|+.+++..|.++..+...+......|+.+.|...+.+...... + .....|..++..-...|+.+.+..+.+++.+
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877777777777777888888777777432221 1 2334566666666677888888888888877
Q ss_pred cC
Q 047305 664 CK 665 (767)
Q Consensus 664 ~~ 665 (767)
..
T Consensus 570 ~~ 571 (679)
T 4e6h_A 570 KF 571 (679)
T ss_dssp HS
T ss_pred hC
Confidence 75
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=5.9e-11 Score=127.90 Aligned_cols=223 Identities=7% Similarity=-0.132 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF-RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQ 591 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (767)
+.+..+|++++... .-....|...+..+...|+.++|. .+|++++.. .+.+...+..++....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567788888763 236678888888888889888996 999999874 455666777888888899999999999999
Q ss_pred HHhcc-----------CC-----------CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-
Q 047305 592 YLRDI-----------SG-----------RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD- 648 (767)
Q Consensus 592 ~~~~~-----------p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 648 (767)
+++.. |. ...+|...+....+.|+.+.|...+.+......+.....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 98753 32 12356666777778899999988888843221122334455555555554
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHH
Q 047305 649 GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a 726 (767)
++.+.|..+|+.+++.. +.++..+..+++.....|+.+.|+.+|++++.....++ ..++...+.+=. ..|. .+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~-~~G~-~~~~ 560 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES-KVGS-LNSV 560 (679)
T ss_dssp SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH-HTCC-SHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcCC-HHHH
Confidence 45899999999998874 77888888999988899999999999999987542111 234555555544 7787 8899
Q ss_pred HHHHHHHHHcCCCCCC
Q 047305 727 YHLLCRMKSVGYDLDA 742 (767)
Q Consensus 727 ~~~~~~~~~~~~~~~~ 742 (767)
..+.+++.+. .|+.
T Consensus 561 ~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 561 RTLEKRFFEK--FPEV 574 (679)
T ss_dssp HHHHHHHHHH--STTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 9999998865 4553
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=9.6e-13 Score=130.38 Aligned_cols=217 Identities=9% Similarity=-0.020 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHH
Q 047305 478 HKAYKILMQLAESGNLPDIITYNSLINGFCK-------VGNI-------NGALKLFKELQLKGLRP-DSVTYGTLINGLQ 542 (767)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 542 (767)
++|...|+++.... +.+...|..++..+.. .|++ ++|..+|++.+.. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 56666777666542 2355566666655542 3554 6666666666652 123 3345666666666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCC-Hh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH-hcCCHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPS-PA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL-QKGEVENA 619 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 619 (767)
..|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++++..|.....+...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666677777777666653 332 22 56666666666666777777777666666665555544443322 25666666
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCC--ChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK-AIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+..+.+... ..|.++.+|..++..+.+.|++++|+.+|+++++.+ ++| ....|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLK-KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665211 236666666666666666666666666666666642 122 3445666666666666666666666666
Q ss_pred HHC
Q 047305 697 LKN 699 (767)
Q Consensus 697 ~~~ 699 (767)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.3e-12 Score=129.49 Aligned_cols=219 Identities=10% Similarity=-0.008 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQ-------RVDRE-------EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
++|+..|++++... +-+...|..++..+. ..|++ ++|..+|+++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998863 225667877777765 35775 8999999999973124456789999999999
Q ss_pred cCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh-cCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ-DGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~ 656 (767)
.|++++|..+|+++++..|.++. ++..++..+.+.|++++|+..+.+... ..|.+...|...+..... .|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-STTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999887 899999999999999999999988432 346666666655555333 699999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILR--PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
+|+++++.. |.++..|..++..+.+.|++++|+.+|++++... +.|+ ..++..++.... ..|+ .++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-~~g~-~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-NIGD-LASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-HHSC-HHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HcCC-HHHHHHHHHHH
Confidence 999999886 7889999999999999999999999999999863 3453 345666666665 7787 99999999998
Q ss_pred HHc
Q 047305 734 KSV 736 (767)
Q Consensus 734 ~~~ 736 (767)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=1.1e-13 Score=130.71 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=120.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
++..+......+...|++++|+..|++.......++...+..+..++...|++++|+..++++++.. +.+...+..++.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666677777777777777777665432455555556666677777777777777766642 234556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCc-------cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CccchHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRD-------DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF--QLAPYTIWLIGL 645 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~--~~~~~~~l~~~~ 645 (767)
+|...|++++|+..|+++++..|.++ .++..++..+...|++++|+..+.+... ..|+ ++.++..++.+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-VTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHH
Confidence 67777777777777777777777666 4455566666666666666666665321 2455 555566666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
...| ...++++...+ +.++..+.. ......+.+++|+.+|+++++.. |+......++
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 4333 33344444443 233333222 22334455677777777776643 5554444333
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=7.3e-14 Score=152.52 Aligned_cols=164 Identities=14% Similarity=0.054 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
..+++.+..++.+.|++++|+..|+++++.. +.+...+..++.+|.+.|++++|++.|+++++..|++..++.+++.+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999998853 445778889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
.+.|++++|++.+.+ +. .+|+++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.+|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999888 44 359999999999999999999999999999999987 88899999999999999999999
Q ss_pred HHHHHHHHH
Q 047305 690 MDVFLYTLK 698 (767)
Q Consensus 690 ~~~~~~~~~ 698 (767)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.3e-13 Score=138.98 Aligned_cols=271 Identities=14% Similarity=0.074 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-Chh
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD----IITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSV 532 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 532 (767)
..+...+..+...|++++|...|+++.+.... + ...+..+...+...|++++|+..++++... +..| ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556678889999999999999999887433 3 356788889999999999999999987643 1111 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPS----PAVYKSLMTWSCRRRK--------------------FSLAFS 587 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 587 (767)
++..+...+...|++++|...++++.+... .++ ..++..+..++...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 678888999999999999999999875310 111 3477788888999999 999999
Q ss_pred HHHHHHhc------cCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcC----CCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 588 LWLQYLRD------ISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKL----NDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 588 ~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.++++++. .+....++..++..+...|++++|+..+.+. .... .+....++..++.+|...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988754 2223346678899999999999999998883 2110 11122368999999999999999999
Q ss_pred HHHHHHHcCCCCC------hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH---H-HHHHHHHHHhhcCCccHHH
Q 047305 657 IFSVLVECKAIVT------PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI-LRP---R-VCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 657 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~-~~~~l~~~l~~~~~~~~~~ 725 (767)
.++++++.. +.. ..++..++.+|...|++++|...++++++.... .++ . .+..+...+. ..|+ +++
T Consensus 245 ~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~-~~~ 321 (338)
T 3ro2_A 245 YYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGN-HDQ 321 (338)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTC-HHH
T ss_pred HHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCC-hHH
Confidence 999987543 222 567888999999999999999999999764211 111 1 2333444444 7888 999
Q ss_pred HHHHHHHHHHc
Q 047305 726 AYHLLCRMKSV 736 (767)
Q Consensus 726 a~~~~~~~~~~ 736 (767)
|...+++..+.
T Consensus 322 A~~~~~~a~~~ 332 (338)
T 3ro2_A 322 AMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=1.1e-13 Score=151.08 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=147.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~ 642 (767)
.+...+..++.+|.+.|++++|++.|+++++..|++..++.+++.+|.+.|++++|+..+.+ +. .+|+++.+|..++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999998 44 3699999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCcc
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNK 722 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 722 (767)
.+|...|++++|++.|+++++.+ |.+..++..++.+|...|++++|+..|+++++.. |+.......+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~- 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD- 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc-
Confidence 99999999999999999999997 8889999999999999999999999999999854 8765544444444448887
Q ss_pred HHHHHHHHHHHH
Q 047305 723 KVHAYHLLCRMK 734 (767)
Q Consensus 723 ~~~a~~~~~~~~ 734 (767)
+++|.+.++++.
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899988888866
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.2e-12 Score=134.64 Aligned_cols=236 Identities=12% Similarity=-0.063 Sum_probs=182.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---
Q 047305 419 LIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-P--- 494 (767)
Q Consensus 419 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--- 494 (767)
....+...|++++|...|++..... ...........++..++..+...|+++.|...+++..+.... +
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL--------IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG--------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH--------hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 5567788999999999999985210 000112235578889999999999999999999988653111 1
Q ss_pred --CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-
Q 047305 495 --DIITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD----SVTYGTLINGLQRVDREEDAFRIFGQMPQN----GC- 562 (767)
Q Consensus 495 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~- 562 (767)
...+++.+..+|...|++++|+..+++....... ++ ..++..+..+|...|++++|+..++++.+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1356788889999999999999999998854111 12 137888999999999999999999998872 33
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccC-----CCccchHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCC
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS-----GRDDESMKSIEEFLQKGE---VENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~p~~ 634 (767)
+....++..++.+|.+.|++++|...++++++..+ .....+..++..|...|+ .++|+..+.+... .|..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~ 338 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADL 338 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHH
Confidence 33466788899999999999999999999996532 222334568889999999 8888888877632 2555
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..++..++.+|...|++++|..+++++++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667889999999999999999999999753
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=2.4e-13 Score=135.35 Aligned_cols=243 Identities=12% Similarity=0.012 Sum_probs=170.3
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES-------GNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-- 525 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 525 (767)
...+.....+..++..+...|++++|...++++.+. ........+..+...|...|++++|+..++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334556778889999999999999999999988763 22234567788889999999999999999988764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 526 ----GLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQN------GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 526 ----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+-.| ...++..+...+...|++++|...++++.+. +..| ....+..++.++...|++++|.++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2122 2456788888999999999999999998763 2222 35567788888999999999999999998
Q ss_pred hc--------cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh--------cCCCCCccchHHHH------HHHhhcCCH
Q 047305 594 RD--------ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF--------KLNDFQLAPYTIWL------IGLCQDGQV 651 (767)
Q Consensus 594 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~p~~~~~~~~l~------~~~~~~g~~ 651 (767)
+. .|....++..++.+|...|++++|+..+.+... ...+.....+..+. ..+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 66 444555677888889999999999888887321 12233333333333 333344566
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|...++++.... +....++..++.+|...|++++|..+|+++++
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777777654 66677888899999999999999999988876
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.52 E-value=6.5e-13 Score=125.32 Aligned_cols=212 Identities=11% Similarity=-0.052 Sum_probs=170.2
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL 537 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 537 (767)
..++..+...+..+...|++++|...|+++.+....++...+..+..++...|++++|+..+++....... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35668899999999999999999999999998865467778888999999999999999999999987422 45678899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSP-------AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKSIE 608 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 608 (767)
..++...|++++|+..++++++.. +.+. ..|..+..++...|++++|++.|+++++..|. ++.++..++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998853 3344 55788888899999999999999999999999 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 609 EFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
+|...|+. .+.+... ..+.+...+ ........+.+++|+..++++++.. |.++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~-~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATP-LASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGG-GTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHh-cccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 99887764 1222211 123332223 3334456688999999999999987 77777777666553
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=1.3e-12 Score=118.69 Aligned_cols=165 Identities=13% Similarity=0.035 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++..|.++.++..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777778888888888888877643 3456777778888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
..|++++|+..+.+... ..|.++..+..++.+|...|++++|+..++++.+.. +.++.++..++.++...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh-cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777432 247777778888888888888888888888888776 6777888888888888888888888
Q ss_pred HHHHHHHC
Q 047305 692 VFLYTLKN 699 (767)
Q Consensus 692 ~~~~~~~~ 699 (767)
.++++++.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888764
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=1.1e-13 Score=120.15 Aligned_cols=146 Identities=10% Similarity=-0.008 Sum_probs=115.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
|+.++...|++++|++.+++++...|.++..++.++.+|.+.|++++|++.+.+.. ..+|+++.+|..++.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCch
Confidence 44556677888889888888888888888888888999999999999988888832 13588888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhhcCCc
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDV-FLYTLKNGFILRPRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 721 (767)
++|+..|+++++.+ |.++.++..++.+|.+.|++++|... ++++++. .|+.+....+...++...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99999999998887 77888888999999999988876665 5888774 47777766666666655554
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=5.1e-12 Score=129.46 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----hh
Q 047305 464 LQTMVEQYCTAGLIHKAYKILMQLAESGN-LPD----IITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD-----SV 532 (767)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~ 532 (767)
+...+..+...|++++|...|+++.+... .++ ..++..+..+|...|+++.|+..+++...... .++ ..
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33456667788999999999988865421 122 34677788888899999999998888775311 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----ccCCCccc
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-----DISGRDDE 602 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 602 (767)
+++.+..+|...|++++|...++++++. +.. ....++..++.+|...|++++|+..|+++++ ..|....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 6777888888899999999888887652 111 1234677788888888999999999988887 77777777
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHH-hhhcC---CCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLE-MDFKL---NDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
+..++.++.+.|++++|+..+.+ +.... +|.....+..++..|...|+ +++|+.++++.. ..+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHH
Confidence 78888888888888888888877 32211 23333345666677777777 777777777632 11333456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++.+|...|++++|..+|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888765
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=134.88 Aligned_cols=237 Identities=10% Similarity=-0.040 Sum_probs=168.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------C
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLK-------GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN------G 561 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 561 (767)
+..++..+...+...|++++|+.+++++... ........+..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888899999999999999999999873 11223456888899999999999999999998763 2
Q ss_pred C-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--------CCCccchHHHHHHHHhcCCHHHHHHHHHHh-hh---
Q 047305 562 C-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--------SGRDDESMKSIEEFLQKGEVENAIQGLLEM-DF--- 628 (767)
Q Consensus 562 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 628 (767)
. +....++..++.+|...|++++|...|+++++.. |....++..++.++...|++++|+..+.+. ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 2346678888999999999999999999999764 444556778899999999999999998883 32
Q ss_pred ---cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC-------C-CCC------hHhHHHHHHHHHhcCChhHHHH
Q 047305 629 ---KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK-------A-IVT------PPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 629 ---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~------~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
...|....++..++.+|...|++++|+..++++++.. . +.. ...+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1245556679999999999999999999999998642 1 111 2223334445556777888888
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 692 VFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.++++... .|+... +..+...+. ..|+ +++|..++++..+
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~-~~g~-~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYR-RQGK-FEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHH-HHTC-HHHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHH
Confidence 88887653 254444 334444444 8888 9999999998765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=1.5e-11 Score=126.01 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=178.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-P-- 494 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-- 494 (767)
.....+...|++++|+..|++...-. ......+....++..++..+...|+++.|...++++.+.... +
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKEL--------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTG--------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH--------hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 34456778999999999999875210 001122334567888999999999999999999987653111 1
Q ss_pred ---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC
Q 047305 495 ---DIITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQN----GC 562 (767)
Q Consensus 495 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~ 562 (767)
...+++.+..+|...|++++|+..+++..+. +..+ ...++..+..+|...|++++|+..++++.+. +.
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 2356788899999999999999999988763 1111 1246788899999999999999999998861 22
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-----ccchHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCC
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR-----DDESMKSIEEFLQKGE---VENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~p~~ 634 (767)
+....++..++.++.+.|++++|...++++++..+.. ...+..+...+...|+ ..+|+..+.+... .|..
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~ 335 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYI 335 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHH
Confidence 3346788889999999999999999999999764432 2233456677778888 8888888777432 2445
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
...+..++.+|...|++++|...|+++.+.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566889999999999999999999999754
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=5.7e-12 Score=114.34 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=143.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-DAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999988432 2588888899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCccHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~ 724 (767)
...|++++|+..++++.+.. +.++.++..++.++...|++++|...++++++.. |+.. .+..+...+. ..|+ ++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~-~~~~-~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYE-QMGR-HE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-HH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHH-HcCC-HH
Confidence 99999999999999999886 7889999999999999999999999999998864 5544 4444555554 8888 99
Q ss_pred HHHHHHHHHHHc
Q 047305 725 HAYHLLCRMKSV 736 (767)
Q Consensus 725 ~a~~~~~~~~~~ 736 (767)
+|...+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=7.9e-11 Score=120.47 Aligned_cols=272 Identities=13% Similarity=-0.024 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hh
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDII----TYNSLINGFCKVGNINGALKLFKELQLKGL-RPDS----VT 533 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~ 533 (767)
........+...|++++|...+++........+.. .+..+...+...|++++|...+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445666778999999999999987764333322 456667788889999999999998875311 1122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-----c
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQN----GCT--P-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-----D 601 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~ 601 (767)
+..+...+...|++++|...+++.++. +.. | ....+..+..++...|++++|...++++++..+... .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778888999999999999988652 222 2 234566678888899999999999999997665432 3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccchH-----HHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHh
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAPYT-----IWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPS 672 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 672 (767)
++..++.++...|++++|...+.+. .....+..+..+. ..+.++...|++++|...++++.+....+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4567888899999999999888883 2212222221122 234557789999999999999876542211 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGF----ILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+..++.++...|++++|...+++++.... .++.......+...+...|+ .++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR-KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 67788999999999999999998865321 11111133333444447787 8999998888663
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=6.9e-13 Score=115.04 Aligned_cols=146 Identities=10% Similarity=-0.073 Sum_probs=122.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEV 616 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (767)
|...+...|++++|+..++...... +.+...+..++.+|.+.|++++|++.|+++++..|.++.++..++.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667788999999999887632 224556677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH-HHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI-FSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
++|+..+.+.. ..+|.++.++..++.+|.+.|++++|.+. ++++++.+ |.++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999998832 23699999999999999999999887765 58999987 8889999999998888875
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=2.1e-10 Score=117.37 Aligned_cols=276 Identities=14% Similarity=-0.030 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc
Q 047305 383 ILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG----MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458 (767)
Q Consensus 383 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (767)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++..... . ......
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~ 90 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----R---QHDVWH 90 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----H---HTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----H---hcCcHH
Confidence 34445567788888888888876654222322 45556667777888888888877663100 0 000000
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESG----NL--P-DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS 531 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 531 (767)
.....+..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++........
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 168 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-- 168 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--
Confidence 111223334444444555555555544443211 00 1 11223334444444455555555444444321110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchH-----
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESM----- 604 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~----- 604 (767)
+.......+..+..++...|++++|...++++++..+. .+..+.
T Consensus 169 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 169 -----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp -----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 00001123334444444555555555555544433211 111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----ccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCCh-HhHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQ----LAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIVTP-PSCVK 675 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~ 675 (767)
..+..+...|++++|...+.+.... .|.+ ...+..++.++...|++++|...++++.+. +.+++. .++..
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 1122344555555555554442111 1111 112445566666666666666666665432 111111 24555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++.++...|+.++|...+++++.
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666666666666666666654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=2.1e-12 Score=126.43 Aligned_cols=225 Identities=10% Similarity=-0.040 Sum_probs=146.8
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhHHHHH
Q 047305 473 TAGLIHKAYKILMQLAE-------SGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK------GLRP-DSVTYGTLI 538 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~ 538 (767)
..|++++|...+++..+ ...+....++..+..+|...|++++|+..++++... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555566666555543 222224567778888888999999999998888754 2122 234677888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC------C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc--------cCCCccch
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN------G-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD--------ISGRDDES 603 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~ 603 (767)
.++...|++++|...++++++. . .+....++..++.+|...|++++|...|+++++. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888889999999888888763 1 1223567777888888888999999888888866 44445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh-hh-------cCCCCCccchHHHHHHHhhcCCHHHHHH------HHHHHHHcCCCCC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEM-DF-------KLNDFQLAPYTIWLIGLCQDGQVKEALN------IFSVLVECKAIVT 669 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~~ 669 (767)
..++.+|...|++++|+..+.+. .. ...+.....+..++..+...+....+.. .++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 77788888888888888877773 21 1234445555555555555444333332 22222111 1334
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..++..++.+|...|++++|..+|+++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888888888888888888764
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1.7e-11 Score=118.25 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=128.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C-CCHhh
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD----SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-T-PSPAV 568 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~ 568 (767)
+...+..+...+.+.|++++|+..|+++.... |+ ...+..+..++...|++++|+..|+++++... . .....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45555666666777777777777777777652 32 34566666777777777777777777766421 1 12345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 569 YKSLMTWSCR--------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 569 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
+..++.++.. .|++++|+..|+++++..|.++.+...+.......+. + ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------~--------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------L--------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----------H--------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----------H--------HHHHHH
Confidence 5556666666 7777777777777777777666544333222111111 1 111578
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCVKLIHGLCKR----------GYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
++.+|...|++++|+..|+++++.. |. .+.++..++.+|... |++++|+..|+++++.. |++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 8999999999999999999998875 44 356788999999877 88999999999998854 76643
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=6.5e-12 Score=116.04 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
..++.+|.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... .+|+++.++..++.+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHh
Confidence 34788889999999999999999999999999999999999999999999999988422 36999999999999987765
Q ss_pred C--HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047305 650 Q--VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCN 709 (767)
Q Consensus 650 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 709 (767)
. .+.+...++++... +|....+...+.++...|++++|+..|+++++ +.|++....
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 4 45666777776532 33344566778888899999999999999986 457765433
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=3.7e-11 Score=112.68 Aligned_cols=186 Identities=11% Similarity=-0.079 Sum_probs=117.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C-HhhHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP-S-PAVYKS 571 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~ 571 (767)
...+..+...+...|++++|+..|+++...... |. ...+..++.++.+.|++++|+..|+++++..... . ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777888888888777765221 11 2356667777777777777877777777642111 1 113444
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 572 LMTWSCR------------------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 572 l~~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
++.++.+ .|++++|+..|+++++..|+++.+........... ..+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~----------~~~~------ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK----------DRLA------ 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH----------HHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH----------HHHH------
Confidence 4444433 45677777777777777777665543221111100 0010
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.....++..|.+.|++++|+..|+++++.. |.++ .++..++.+|.+.|++++|+..++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 113467788888888888888888888775 4443 567888888888888888888888887654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=2e-11 Score=117.76 Aligned_cols=176 Identities=10% Similarity=0.015 Sum_probs=119.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---ccchHHHHHHHHhcCCHHHHHHHHHHh-hhc-CCCCCccchH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR---DDESMKSIEEFLQKGEVENAIQGLLEM-DFK-LNDFQLAPYT 639 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~p~~~~~~~ 639 (767)
+...+...+..+.+.|++++|+..|+++++..|.+ +.++..++.+|...|++++|+..+.+. ... .+|..+.++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555555666666777777777777777776666 556666777777777777777776663 221 1223344566
Q ss_pred HHHHHHhh--------cCCHHHHHHHHHHHHHcCCCCChHhH-----------------HHHHHHHHhcCChhHHHHHHH
Q 047305 640 IWLIGLCQ--------DGQVKEALNIFSVLVECKAIVTPPSC-----------------VKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 640 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.++.++.. .|++++|+..|+++++.. |.++... ..++.+|...|++++|+..|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777 777777777777777765 5454444 678999999999999999999
Q ss_pred HHHHCCCCCCH----HHHHHHHHHHhhcC----------CccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 695 YTLKNGFILRP----RVCNYLLRSLLFSK----------DNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 695 ~~~~~~~~~~~----~~~~~l~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
++++.. |++ ..+..+..++. .. |+ +++|...++++... .|+......
T Consensus 173 ~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~ 233 (261)
T 3qky_A 173 AVFDAY--PDTPWADDALVGAMRAYI-AYAEQSVRARQPER-YRRAVELYERLLQI--FPDSPLLRT 233 (261)
T ss_dssp HHHHHC--TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHH-HHHHHHHHHHHHHH--CTTCTHHHH
T ss_pred HHHHHC--CCCchHHHHHHHHHHHHH-Hhcccchhhcccch-HHHHHHHHHHHHHH--CCCChHHHH
Confidence 999865 552 23333444443 33 66 89999999998875 577764443
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=8.4e-12 Score=137.51 Aligned_cols=148 Identities=8% Similarity=-0.072 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..+..++...|++++|+..++++++.+ +.+...+..++.+|...|++++|++.|+++++.+|.++.++..++.++.+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22344444444444455555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
.|++++ +..+.+.. ..+|.++.+|..++.+|.+.|++++|++.|+++++.+ |.+..++..++.++...|
T Consensus 514 ~g~~~~-~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTCCCT-TCHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred cCChHH-HHHHHHHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccC
Confidence 555544 44444421 1234444445555555555555555555555554443 333444444444444433
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=1.6e-11 Score=120.17 Aligned_cols=227 Identities=9% Similarity=-0.073 Sum_probs=157.3
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHHH
Q 047305 507 CKVGNINGALKLFKELQLK-------GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN------GC-TPSPAVYKSL 572 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 572 (767)
...|++++|+.++++.... .......++..+...+...|++++|+..++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 11123457888999999999999999999998764 22 2245678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc--------cCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh------cCCCCCccc
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRD--------ISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF------KLNDFQLAP 637 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~------~~~p~~~~~ 637 (767)
+.+|...|++++|.+.|+++++. .|....++..++.+|...|++++|+..+.+ +.. ...|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999976 355566778899999999999999999988 332 114555667
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcC--------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH---C--CCCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECK--------AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK---N--GFILR 704 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~ 704 (767)
+..++.+|...|++++|+.+++++++.. .+.....+..++..+...+....+..+.+ +.. . ...|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE-YGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHhcCCCCHH
Confidence 9999999999999999999999997641 13334456666666665555444443222 211 1 11133
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.......+..++...|+ +++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGK-LEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 23333334444448888 9999999998764
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=7.9e-12 Score=137.69 Aligned_cols=185 Identities=8% Similarity=-0.075 Sum_probs=144.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047305 472 CTAGLIHKAYKILMQLA--------ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR 543 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 543 (767)
...|++++|++.++++. +.. +.+...+..+..++...|++++|+..++++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999887 432 335667888888899999999999999999876422 56678888888999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++.+|.++.++..++.++.+.|++++|+..+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998754 3456778888888999999999 99999999999999999999999999999999998888
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHH-HHHHHHH
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA-LNIFSVL 661 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 661 (767)
.+.. ..+|.+..++..++.++...++.+++ .+-++++
T Consensus 558 ~~al-~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 558 DEVP-PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp HTSC-TTSTTHHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred Hhhc-ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 8842 24688888899999998887774444 3344443
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=6.3e-11 Score=116.08 Aligned_cols=191 Identities=9% Similarity=-0.123 Sum_probs=116.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--CHhhHHHHHH
Q 047305 505 GFCKVGNINGALKLFKELQLK----GLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC---TP--SPAVYKSLMT 574 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 574 (767)
.|...|++++|+..|++.... |-.++ ..+|+.+..+|...|++++|+..++++++... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777766543 21111 34667777777777777777777777665210 11 1346667777
Q ss_pred HHHhc-CChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc-------chHH
Q 047305 575 WSCRR-RKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA-------PYTI 640 (767)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~-------~~~~ 640 (767)
+|... |++++|+..|+++++..|.. ..++..++.++...|++++|+..+.+... ..|.+.. .+..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK-SSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTSSCTTTGGGHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcCCcccHHHHHHHHH
Confidence 77775 88888888888887766644 23455677777777777777777776321 1233322 3566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-----hHHHHHHHHH--hcCChhHHHHHHHHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIVTPP-----SCVKLIHGLC--KRGYLDLAMDVFLYTL 697 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~~ 697 (767)
++.++...|++++|+..|+++++.. |.... .+..++.++. ..+++++|+..|++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 7777777788888888887776654 22211 2333444443 3456777777776653
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=4.5e-11 Score=110.36 Aligned_cols=136 Identities=8% Similarity=-0.015 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+..++.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++..|+++.++..++.+|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 48889999999999999999999864 45688999999999999999999999999999999999999999999987765
Q ss_pred HH--HHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 616 VE--NAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 616 ~~--~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+ .+...+.+.. .|.. ...+..++.++...|++++|+..|+++++.. |+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 44 3444433332 1221 2246778889999999999999999999875 5554444443
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=4.6e-11 Score=117.07 Aligned_cols=229 Identities=11% Similarity=-0.050 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKV--G-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
+|.+++++..+.- +++...| . +.+. + ++++|...|++. +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4566677665552 2221112 2 2233 2 488898888876 446788999999999999
Q ss_pred HhhhC----CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhc-CCHHHHHHHH
Q 047305 556 QMPQN----GCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQK-GEVENAIQGL 623 (767)
Q Consensus 556 ~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~ 623 (767)
++.+. |-++. ..+|..++.+|.+.|++++|+..|+++++..|.. ..++..++.+|... |++++|+..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98763 31222 5688899999999999999999999999876654 34677899999996 9999999999
Q ss_pred HH-hhhcCCCCC------ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-------hHHHHHHHHHhcCChhHH
Q 047305 624 LE-MDFKLNDFQ------LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP-------SCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 624 ~~-~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A 689 (767)
.+ +... |.. ..++..++.+|...|++++|+..|+++.+.. +.+.. ++..++.++...|++++|
T Consensus 142 ~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 142 ELAGEWY--AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH--HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98 3322 211 3458899999999999999999999999876 33222 567889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH------HHHHHHHHhh-cCCccHHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRV------CNYLLRSLLF-SKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~------~~~l~~~l~~-~~~~~~~~a~~~~~~~~ 734 (767)
+..|+++++ +.|+... +..+...+-. ..++ +++|...++++.
T Consensus 219 ~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~~~~~ 267 (292)
T 1qqe_A 219 ARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHGGGC--C---------HHHHHHHHHHHHTTCTTT-HHHHHHHHTTSS
T ss_pred HHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCC
Confidence 999999975 3355332 2223333321 3344 778887776643
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.29 E-value=3e-12 Score=110.04 Aligned_cols=130 Identities=8% Similarity=-0.029 Sum_probs=108.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
..+...+.+.+...+- ++++++..|.++.++..++..+.+.|++++|+..+.+... .+|.++.+|..++.+|
T Consensus 9 ~~~~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIY 80 (151)
T ss_dssp CHHHHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 3445555555544444 4455677889999999999999999999999999988432 3699999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++.. |++.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999987 8889999999999999999999999999999855 7765
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=1.4e-09 Score=104.92 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=177.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG--NINGALKLFKELQLKGLRPDSVTYGTLINGL----QRV 544 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 544 (767)
.......++|+..++.++..++. +...|+.-..++...| ++++++.+++.+.....+ +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33444557899999999887533 6677888888888888 999999999999987544 555666655555 445
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh--HHHHHHHHHHhccCCCccchHHHHHHHHhcCC----
Q 047305 545 ---DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS--LAFSLWLQYLRDISGRDDESMKSIEEFLQKGE---- 615 (767)
Q Consensus 545 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---- 615 (767)
+++++++.+++++++.. +.+..+|..-.-++.+.|.++ ++++.++++++.+|.|..++...+.+....|.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78899999999998854 556677776666777888888 99999999999999999999999888888877
Q ss_pred --HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH-HHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCChhHHH
Q 047305 616 --VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE-ALNIFSVLVECK--AIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 616 --~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
++++++.+.+.-. .+|.+.++|+.+..++.+.|+..+ +..+..++.+.+ -+.++.++..++++|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~-~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIV-KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH-HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8888888777322 369999999999999999888544 556777776542 2567888999999999999999999
Q ss_pred HHHHHHHH
Q 047305 691 DVFLYTLK 698 (767)
Q Consensus 691 ~~~~~~~~ 698 (767)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=2.3e-10 Score=107.24 Aligned_cols=184 Identities=10% Similarity=-0.039 Sum_probs=125.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCT-P-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESMK 605 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~ 605 (767)
...+..++..+...|++++|+..|+++++.... + ....+..++.+|.+.|++++|+..|+++++..|.++. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677788888999999999888874321 1 1356777788888889999999999998888888875 5566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH------------
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC------------ 673 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------ 673 (767)
++.++...|.. ....+..++..+...|++++|+..|+++++.. |.++.++
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHH
Confidence 67776654321 01113344455555677777777777777765 4444333
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 674 -----VKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 674 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
..++..|.+.|++++|+..|+++++.. |+.+ .+..+..++. ..|+ +++|...++++...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~-~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYR-QMQM-NAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHH-HcCC-cHHHHHHHHHHHhh
Confidence 467889999999999999999999865 5543 3444555555 8888 99999999998875
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=9.8e-11 Score=99.61 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..++..+...|++++|..+++++++..|.+...+..++..+...|++++|+..+.+... ..|.++..+..++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHH
Confidence 4556667777778888888888888877777777777778888888888888777777432 246667778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.|++++|+..++++.+.. +.++.++..++.++...|++++|...++++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 889999999888888776 6677888888888888999999999888887643
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=5.3e-11 Score=116.06 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+...+.+.|++++|...|+++++..|.++.++..++.++.+.|++++|+..+.++.. ..|+........+..+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcchHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555444211 12333322333333344
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
..++.++|+..++++++.+ |.++..+..++.+|...|++++|+..|+++++.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4455555555555555544 445555555555555555555555555555543
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=4.8e-11 Score=106.92 Aligned_cols=161 Identities=11% Similarity=0.024 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH-Hh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF-LQ 612 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~ 612 (767)
+......+...|++++|...++++++.. +.+...+..+..++.+.|++++|+..|+++++..| ++......+... ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3344445555555666665555555432 22344555555555555666666666555555555 443322222121 11
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCChhHHHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV-TPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.++..+|+..+.+.. ...|+++.++..++.++...|++++|+..|+++++.++.+ ++..+..++.++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al-~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQEL-AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111222344444421 1235555666666666666666666666666666554211 23455666666666666666666
Q ss_pred HHHHHH
Q 047305 692 VFLYTL 697 (767)
Q Consensus 692 ~~~~~~ 697 (767)
.|++++
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=1e-10 Score=114.00 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=144.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 528 RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
+.+...+..+...+...|++++|...|+++++.. +.+...+..++.++.+.|++++|...++++++..|+........+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345567788889999999999999999998864 456788889999999999999999999999999996555555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPSCVKLIHGLCKRGY 685 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 685 (767)
..+...++.++|+..+.+... ..|+++.++..++.+|...|++++|+..|+++++.+ |.+ ..++..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 667788888889888887322 359999999999999999999999999999999887 544 7789999999999999
Q ss_pred hhHHHHHHHHHHH
Q 047305 686 LDLAMDVFLYTLK 698 (767)
Q Consensus 686 ~~~A~~~~~~~~~ 698 (767)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998864
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=5.6e-11 Score=106.47 Aligned_cols=161 Identities=11% Similarity=0.019 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH-h
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL-C 646 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~-~ 646 (767)
.+...+..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..| ++..+..++... .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-ChHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999988432 246 665444444332 2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhhcCCccH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP---RVCNYLLRSLLFSKDNKK 723 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~ 723 (767)
..+...+|+..++++++.+ |.++..+..++.++...|++++|+..|+++++.. |++ ..+..+...+. ..|+ .
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~a~~~l~~~~~-~~g~-~ 160 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN--LGAQDGEVKKTFMDILS-ALGQ-G 160 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTTTTTHHHHHHHHHHH-HHCS-S
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccChHHHHHHHHHHHH-HhCC-C
Confidence 3344456899999999987 8889999999999999999999999999998765 543 34444555554 7787 8
Q ss_pred HHHHHHHHHHHH
Q 047305 724 VHAYHLLCRMKS 735 (767)
Q Consensus 724 ~~a~~~~~~~~~ 735 (767)
++|...+++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999988654
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=1.7e-09 Score=104.41 Aligned_cols=233 Identities=4% Similarity=-0.100 Sum_probs=184.2
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG--LIHKAYKILMQLAESGNLPDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 504 (767)
...++|+.++.++. ...+.+..+|+.....+...| +++++++.++.+...++. +..+|+.-..
T Consensus 47 e~s~~aL~~t~~~L--------------~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~ 111 (306)
T 3dra_A 47 EYSERALHITELGI--------------NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQL 111 (306)
T ss_dssp CCSHHHHHHHHHHH--------------HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------------HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHH
Confidence 34468888888875 234456677888888888888 999999999999987543 6667776555
Q ss_pred HH----Hhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 505 GF----CKV---GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREE--DAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 505 ~~----~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
.+ ... +++++++.+++.+.+...+ +..+|..-..++.+.|.++ +++++++++++.+ +-+-..|..-..+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 55 555 7899999999999988644 7788888888888889888 9999999999865 4466677666666
Q ss_pred HHhcCC------hhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh--cCCCCCccchHHHHHHHh
Q 047305 576 SCRRRK------FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF--KLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 576 ~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~--~~~p~~~~~~~~l~~~~~ 646 (767)
+.+.++ ++++++.+++++..+|.+..+++.+..++.+.|+..+++..+.. ... ...|.++.++..++.+|.
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 667776 99999999999999999999999999999999986665554444 221 123777888999999999
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCCChHhHHHHH
Q 047305 647 QDGQVKEALNIFSVLVE-CKAIVTPPSCVKLI 677 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~ 677 (767)
+.|+.++|+++++.+.+ .+ |.....|...+
T Consensus 270 ~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 99999999999999986 56 66666666544
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=7.5e-11 Score=127.96 Aligned_cols=152 Identities=9% Similarity=-0.095 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.|+++++..|.+..++..++.+|...|++++|++.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555544421 22344444555555555555555555555555555555555555555555555555555555
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR---GYLDLAMDVFLYTLKN 699 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 699 (767)
+... ..|+++.++..++.+|...|++++|++.++++++.+ |.++.++..++.++... |++++|.+.++++++.
T Consensus 82 ~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASD-AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 4211 134455555555555555555555555555555544 44455555555555555 5555555555555543
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.22 E-value=1.1e-10 Score=97.36 Aligned_cols=108 Identities=7% Similarity=-0.051 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+...+..|.+.|++++|++.|+++++..|.++.++..++.+|...|++++|+..+.+.. ..+|.++.+|..+|.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI-RLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555544444421 1234444445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.|++++|++.|+++++.+ |.++.++..++
T Consensus 94 ~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 555555555555555444 44444444433
No 109
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=2.3e-09 Score=101.98 Aligned_cols=182 Identities=10% Similarity=-0.006 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 558 (767)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 2233334455555556666666666666554443211 23344455555666666666666666665
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHh--cCChhHHHHHHHHHHhccCC--CccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 559 QNGCTP-----SPAVYKSLMTW--SCR--RRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 559 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
+. .| +..+...++.+ ... .+++.+|..+|+++.+..|+ .+..+++ ++.+.|++++|.+.+..+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 42 33 12232333322 111 22566666666665554443 1111111 4455555555544444321
Q ss_pred hcC---------CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 628 FKL---------NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 628 ~~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
... +|+++.++.+++......|+ +|.++++++.+.. |.+|
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCCh
Confidence 110 24555545444444444454 5555555555554 4444
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=8.5e-11 Score=98.03 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=100.8
Q ss_pred HhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 593 LRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
...+|.....+...|..|.+.|++++|++.+.+.. ..+|.++.+|..++.+|.+.|++++|+..++++++.+ |.++.+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 83 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKG 83 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHH
Confidence 44677777888899999999999999999999832 2369999999999999999999999999999999998 888999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLR 713 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 713 (767)
+..++.+|...|++++|+..|+++++.. |+.......+.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 9999999999999999999999999854 77665444333
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=8e-10 Score=102.16 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC----ChhHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR----KFSLAFSLW 589 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 589 (767)
+|+..|++..+.| +...+..+...|...+++++|+..|++..+.| ++..+..+..+|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 44455555555555566666666666655533 34444445555544 4 555565555
Q ss_pred HHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCCC--CCccchHHHHHHHhh----cCCHHHHHHHHH
Q 047305 590 LQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLND--FQLAPYTIWLIGLCQ----DGQVKEALNIFS 659 (767)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 659 (767)
+++.+ +.++.+...++..|.. .+++++|+..+.+.... .| .++.++..|+.+|.. .+++++|+.+|+
T Consensus 77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 55543 2444555555555554 45555555555553211 12 113445555555555 445555555555
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHC
Q 047305 660 VLVECKAIVTPPSCVKLIHGLCKR-G-----YLDLAMDVFLYTLKN 699 (767)
Q Consensus 660 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 699 (767)
++.+. +.++.++..|+.+|... | ++++|+..|+++.+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55544 23334455555555432 2 455555555555443
No 112
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.1e-08 Score=97.41 Aligned_cols=187 Identities=13% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 047305 397 AQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL 476 (767)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (767)
|+..|++....+ .++..++..+..++...|++++|++++.+.... .....+...+...+..+.+.|+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------------~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN------------DEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------------SCSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------CCCcCcHHHHHHHHHHHHHCCC
Confidence 555565555443 234444455566666666666666666654200 0001334444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 477 IHKAYKILMQLAESGNLP-----DIITYNSLING--FCKVG--NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
.+.|.+.+++|.+. .| +..+...++.+ ....| ++++|..+|+++... .|+..+...++.++.+.|++
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 55555555555443 22 12222333333 22222 455555555555433 23322222233345555555
Q ss_pred HHHHHHHHHhhhCC---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 548 EDAFRIFGQMPQNG---------CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 548 ~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
++|...++.+.+.. -+.++.++..++.+....|+ +|.+++.++.+..|+++.+
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 55555555433210 02233344333333333443 4455555555555554443
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.16 E-value=5.9e-11 Score=102.36 Aligned_cols=112 Identities=14% Similarity=-0.013 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
..|+++++..|.+...+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 346677777888888888888888888888888888877422 358888888888888888899999999999988887
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|.++.++..++.+|...|++++|+..|+++++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7788888888889999999999999998887743
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=3.7e-10 Score=122.45 Aligned_cols=153 Identities=10% Similarity=-0.103 Sum_probs=116.7
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
.|++++|.+.|+++++..|.+..++..++..+...|++++|++.+.+.. ...|+++.++..++.+|...|++++|++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998843 246899999999999999999999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcC---CccHHHHHHHHHHHH
Q 047305 659 SVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSK---DNKKVHAYHLLCRMK 734 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~---~~~~~~a~~~~~~~~ 734 (767)
+++++.+ |.++.++..++.+|...|++++|.+.|+++++.. |+... +..+...+. .. |+ +++|...+++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~-~~~~~g~-~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRR-RLCDWRA-LDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTCCTT-HHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-Hhhcccc-HHHHHHHHHHHH
Confidence 9999987 7889999999999999999999999999999864 66544 444444444 66 77 999999999988
Q ss_pred HcC
Q 047305 735 SVG 737 (767)
Q Consensus 735 ~~~ 737 (767)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.8e-09 Score=99.78 Aligned_cols=175 Identities=15% Similarity=0.005 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD----REEDAFRIF 554 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~A~~~~ 554 (767)
+|...|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677788887763 67788888999999999999999999998875 56777788888877 6 899999999
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCC--CccchHHHHHHHHh----cCCHHHHHHHHH
Q 047305 555 GQMPQNGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQ----KGEVENAIQGLL 624 (767)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~ 624 (767)
++..+.| ++..+..+..+|.. .+++++|+.+|+++.+..|. .+.++..++..|.. .+++++|+..+.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 66777888888877 88999999999999988773 48899999999998 889999999999
Q ss_pred HhhhcCCCCCccchHHHHHHHhhc-C-----CHHHHHHHHHHHHHcC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQD-G-----QVKEALNIFSVLVECK 665 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 665 (767)
+.... |.++.++..|+.+|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 85433 55666799999999865 3 8999999999999887
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.2e-09 Score=92.74 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++++..|.++..+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34556666777777777777777776543 33556666677777777788888888877777777777777777778888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.|++++|+..+.+... ..|.++..+..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888777777432 246666678888888888888888888888887664
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=1.4e-10 Score=99.66 Aligned_cols=100 Identities=10% Similarity=-0.148 Sum_probs=91.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+.+.|++++|+..|+++++.+|.++..+..++.+|...|++++|+..+.+... .+|+++.+|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA-LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCCCCcHHHHHHHHH
Confidence 4557778888899999999999999999999999999999999999999999999999998422 359999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcC
Q 047305 645 LCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~ 665 (767)
|...|++++|+..|+++++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=5e-10 Score=108.65 Aligned_cols=195 Identities=9% Similarity=-0.070 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
...+..+...+...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|+..++++++..|.+..+++.++.+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666777777777777777777777642 335667777777777788888888888888887888777777888888
Q ss_pred HhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
...|++++|+..+.+ +.. .|+++..+...++...+ ..++..... ......+.++.+...++..+ .|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 888888888777776 322 24443333333333332 222222222 22233466666666665543 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++.++++++ ..|+......-+..+..+.++.+++|..+|++..+.
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888765 346665555544444434433377888888876643
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.10 E-value=4.7e-10 Score=100.65 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=107.6
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH-HhhcCCH--HH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG-LCQDGQV--KE 653 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~ 653 (767)
...|++++|+..++++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++.+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4578899999999999999999999999999999999999999988888322 247888889999999 7788998 99
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
|+..++++++.+ |.++.++..++.+|...|++++|...|+++++.. |+......++
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 155 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN--SPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTSCHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCccHHHHH
Confidence 999999999887 7788899999999999999999999999998854 6554333333
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=5.3e-10 Score=108.51 Aligned_cols=195 Identities=8% Similarity=-0.099 Sum_probs=148.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+...+..+...+...|++++|+..|++....... +...+..+..++...|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566777888899999999999999999887322 66788889999999999999999999998753 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
+|...|++++|...|+++++..|+++..+...+....+..+.... ........|.++.+...++..+ .|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW----NSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH----HHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999999999998876665444444433222222 1222233466666566665543 7999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLK 698 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 698 (767)
++.++++++.+ |.+......+...+.+. +.+++|.++|+++.+
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999886 66666666677666665 778999999998865
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.5e-09 Score=101.93 Aligned_cols=193 Identities=11% Similarity=-0.051 Sum_probs=134.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHhhh------------CCCC-----
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSVTYGTL-------INGLQRVDREEDAFRIFGQMPQ------------NGCT----- 563 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~------------~~~~----- 563 (767)
..++...|.+.|.++...... ....|+.+ ..++...++..+++..+...++ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 456677777777777665322 23455555 3444444444455555544443 1100
Q ss_pred ---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchH
Q 047305 564 ---PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYT 639 (767)
Q Consensus 564 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~ 639 (767)
........+...+...|++++|.+.|+.++...|.+. ..+.++..+.+.|++++|+..+.+.....+|.. ..++.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 0123444566678888999999999988888888777 788888899999999999888876432212211 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
.++.++...|++++|+..|+++......| .+......+.++.+.|+.++|...|+++.... |+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 99999999999999999999998543213 45578889999999999999999999998754 65
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=1.5e-09 Score=107.15 Aligned_cols=198 Identities=8% Similarity=-0.061 Sum_probs=135.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
..|++++|.+++++..+.... . + +...+++++|...|.++ +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 356778888888877654211 1 0 11146777777776654 345677788888888
Q ss_pred HHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHH
Q 047305 553 IFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 553 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
.+.++.+. +-. ....+|..+..+|.+.|++++|+..|+++++..+.. ..++..++.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877652 111 114467777778888888888888888888654322 2355677888887 88888888
Q ss_pred HHHH-hhhcCCC----CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC------hHhHHHHHHHHHhcCChhHHH
Q 047305 622 GLLE-MDFKLND----FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT------PPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 622 ~~~~-~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+.+ +...... ....++..++.+|...|++++|+..|+++++.. +.+ ..++..++.++...|++++|+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8877 3221101 113468888999999999999999999987642 111 235667778888889999999
Q ss_pred HHHHHHH
Q 047305 691 DVFLYTL 697 (767)
Q Consensus 691 ~~~~~~~ 697 (767)
..|++++
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.07 E-value=2e-09 Score=95.21 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..++..+...|++++|...|+++++..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777666666321 24666666777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCChhHHHHHHHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIH--GLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 697 (767)
..|++++|+..++++++.+ |.++..+..++. .+...|++++|+..+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665 555555533333 3666677777777666553
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.07 E-value=3e-10 Score=97.39 Aligned_cols=110 Identities=14% Similarity=-0.038 Sum_probs=78.0
Q ss_pred HHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 047305 588 LWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI 667 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 667 (767)
.|+++++..|.+...+..++..+...|++++|+..+.+... .+|.++.+|..++.+|...|++++|+..|+++++.+ |
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44555666666666667777777777777777777766322 247777777777777777788888888888877776 6
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 668 VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 668 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.++.++..++.+|...|++++|+..|+++++.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777788888888888888888777764
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.07 E-value=3.6e-10 Score=97.37 Aligned_cols=117 Identities=11% Similarity=-0.098 Sum_probs=97.4
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
.++++++.. +.+...+..++..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..|
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-MDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC
Confidence 455555432 234556777888899999999999999999999999999999999999999999999999988422 358
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
+++.++..++.+|...|++++|+..|+++++.. |.++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI-ANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCCcc
Confidence 999999999999999999999999999998875 445544
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=8.9e-08 Score=100.35 Aligned_cols=101 Identities=10% Similarity=0.024 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-HHHHHHHHH
Q 047305 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKR-YDEAYAWYR 297 (767)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 297 (767)
.+.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 56666666666543 222 7788888888887764 3577777777766665553 345566666
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHC
Q 047305 298 KMFEE-KIEP-DVVLYGVMIRGLS----EAGKVKDAMKLLSDMRER 337 (767)
Q Consensus 298 ~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~ 337 (767)
..+.. |..| +...|...+..+. .+++.+.+..+|+.....
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 66543 3222 5566666665543 235566777777777763
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=1.4e-08 Score=99.43 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNG-CTPSP----AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMK 605 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~ 605 (767)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..|+++++..+.... ++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 12221 12334566666777888888888888875444333 4667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh------cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC----CC-ChHhHH
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDF------KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA----IV-TPPSCV 674 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~ 674 (767)
++.+|...|++++|+..+.+... ...+....++..++.+|.+.|++++|+.+++++++... .. -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 78888888888888777777321 11223334688888888888888888888888865321 11 156788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHH
Q 047305 675 KLIHGLCKRGY-LDLAMDVFLYTLK 698 (767)
Q Consensus 675 ~l~~~~~~~g~-~~~A~~~~~~~~~ 698 (767)
.+|.+|.+.|+ +++|...|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888884 5888888888865
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=5.9e-09 Score=96.74 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+..+...+...|++++|+..++++. .|+...+..++.+|...|++++|+..|+++++..|.++.++..++.+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3444555555666666666665553 334555555555555666666666666555555555555555555555555
Q ss_pred CCHHHHHHHHHH
Q 047305 614 GEVENAIQGLLE 625 (767)
Q Consensus 614 g~~~~A~~~~~~ 625 (767)
|++++|+..+.+
T Consensus 85 ~~~~~A~~~~~~ 96 (213)
T 1hh8_A 85 EKYDLAIKDLKE 96 (213)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 555555444444
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=3.1e-09 Score=89.88 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=84.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+...+..++..+...|++++|...|+++++..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCchHHHHHHHH
Confidence 34556667777777788888888888888877777777777777777777777777777666322 24666666777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
+|...|++++|+..++++++.. |.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777765 556666777777776655
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.02 E-value=8.5e-08 Score=93.27 Aligned_cols=233 Identities=8% Similarity=0.011 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
++..+.......+..++|++.+++++..++. +...|+.-..++...| .+++++.+++.+.....+ +..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3344444445556667899999999887543 6677888777777788 599999999999987544 666787777777
Q ss_pred Hhc-C-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 542 QRV-D-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS--------LAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 542 ~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
... + ++++++.+++++++.. +.+...|..-.-++.+.|.++ ++++.++++++.+|.|..++...+.++.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 666 6 7889999999998754 445666665555555666666 8999999999999999999999888888
Q ss_pred hcCC-------HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH--------------------HHHHHHHHHHHHc
Q 047305 612 QKGE-------VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV--------------------KEALNIFSVLVEC 664 (767)
Q Consensus 612 ~~g~-------~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~ 664 (767)
..+. ++++++.+.+.- ..+|.+..+|+.+..++.+.|+- .+..+....+...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8776 677777777632 13588888898888888877664 2233333333222
Q ss_pred C-----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 665 K-----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 665 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
. ..+++.++..++++|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 1366778888899999889999999999887643
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.02 E-value=1.2e-09 Score=93.62 Aligned_cols=118 Identities=10% Similarity=-0.137 Sum_probs=95.9
Q ss_pred HHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 553 IFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 553 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
.|+++++. .| +...+..++..+.+.|++++|+..|+++++..|.++..+..++.++...|++++|+..+.+... .+
T Consensus 6 ~l~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~ 82 (142)
T 2xcb_A 6 TLAMLRGL--SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL-MD 82 (142)
T ss_dssp ---CCTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC
T ss_pred hHHHHHcC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC
Confidence 44444442 33 4456667777888999999999999999999999999999999999999999999999988432 35
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
|.++.++..++.+|...|++++|+..|+++++.. |.++....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 124 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA-AAQPAHEA 124 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCGGGHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCcchHH
Confidence 9999999999999999999999999999998876 55554443
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=1.2e-08 Score=94.66 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC 577 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (767)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..++++++.. +.+...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455556666677777776666552 4455666666666677777777777777666543 334556666666666
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|++++|++.|+++++..|.+..... .. +.....|..+.++..++.+|...|++++|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~------~~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY------KI-------------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC------GG-------------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH------HH-------------hccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 777777777777777666666553321 00 01112244444566666666666666666666
Q ss_pred HHHHHHcC
Q 047305 658 FSVLVECK 665 (767)
Q Consensus 658 ~~~~~~~~ 665 (767)
|+++++..
T Consensus 144 ~~~al~~~ 151 (213)
T 1hh8_A 144 LALATSMK 151 (213)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 66666554
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.01 E-value=3.5e-09 Score=89.14 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=92.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-IDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cCccCHHHHHHHHHH
Confidence 3456666777777888888888888888888888877777888888888888888777777322 247777778888888
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
|...|++++|+..++++.+.+ |.++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888887776 66777777888888777764
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=6.9e-09 Score=102.34 Aligned_cols=120 Identities=8% Similarity=-0.043 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHH-hhhc-CCC---CCccc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLE-MDFK-LND---FQLAP 637 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~p---~~~~~ 637 (767)
+..+..+|.. |++++|+..|+++++..|.. ..++..++.+|...|++++|+..+.+ +... ..+ .....
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3334444444 44555555554444433322 22334445555555555555555554 1110 000 01124
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh-----HhHHHHHHHHHhcCChhHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP-----PSCVKLIHGLCKRGYLDLAMDV 692 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~ 692 (767)
+..++.++...|++++|+..|++++ .. |... .....++.++ ..|+.+.+..+
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6677777777788888888888887 43 3221 1233445444 56676666553
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=3.7e-07 Score=95.63 Aligned_cols=104 Identities=8% Similarity=0.059 Sum_probs=63.9
Q ss_pred cC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 047305 251 LR-RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK-VKDAM 328 (767)
Q Consensus 251 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 328 (767)
.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366677777776653 122 8888888888888875 4688888888877766653 35566
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhC
Q 047305 329 KLLSDMRER-GIVP-DTYCYNALIKGFC----DLGLLDQARSLQVEIWKR 372 (767)
Q Consensus 329 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~ 372 (767)
.+|+..... |..| +...|...+..+. ..++.+.+..+|+.++..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 677766553 4333 4566666665443 234567777777777764
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.99 E-value=3.8e-10 Score=112.62 Aligned_cols=157 Identities=11% Similarity=-0.018 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
+++++|+..++...+.. +.+...+..+...|.+.|++++|+..|+++++..|.+.... .+.+.+ +.
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~~~~-~~ 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------NEEAQK-AQ 192 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------SHHHHH-HH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC------------hHHHHH-HH
Confidence 33444444444433311 11344555666666666666777666666666666653210 000000 00
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
|....+|..++.+|.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~ 262 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PN 262 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SS
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC
Confidence 0012346666666666666666666666666665 5556666666666666666666666666666533 54
Q ss_pred HHHHHHHHHHHhhcCCccHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a 726 (767)
.......+..++...|+ +++|
T Consensus 263 ~~~a~~~l~~~~~~~~~-~~~a 283 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRR-QLAR 283 (336)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHH-HHHH
Confidence 44333333333324444 4444
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.4e-08 Score=99.45 Aligned_cols=164 Identities=9% Similarity=-0.039 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccch
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDES 603 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 603 (767)
...+..+...|++++|...+.+..+...... ...+..++..+...|++++|...|+++++..+.. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444555666666666666666554321111 0122334444556667777777777776543332 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh-h-cCCCCC----ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----C-ChHh
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMD-F-KLNDFQ----LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----V-TPPS 672 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~ 672 (767)
..++.+|...|++++|+..+.+.. . ...|++ ..++..++.+|...|++++|+.+++++++.... . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 566777777777777777766621 1 112332 146899999999999999999999998764311 0 1567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLA-MDVFLYTLK 698 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 698 (767)
+..++.+|.+.|++++| ..++++++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88999999999999999 888988864
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=4.3e-09 Score=104.97 Aligned_cols=164 Identities=7% Similarity=-0.100 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 047305 510 GNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSL 588 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (767)
+++++|+..++..... .| +...+..+...+.+.|++++|+..|+++++.. |+...+ ..+.+.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~-- 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQ-- 189 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHH--
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHH--
Confidence 3444555555444332 23 35578889999999999999999999998853 221000 001111
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
+..|....++.+++.+|.+.|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+ |.
T Consensus 190 -----~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~ 262 (336)
T 1p5q_A 190 -----KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PN 262 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS
T ss_pred -----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 11111223444555555555555555555555211 236666667777777777777777777777777765 66
Q ss_pred ChHhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047305 669 TPPSCVKLIHGLCKRGYLDLA-MDVFLYTL 697 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 697 (767)
++.++..++.++...|++++| ...|+++.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776 44555554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=5.4e-09 Score=98.09 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=147.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHhccCCCccchHH----------
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSL-------MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK---------- 605 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~---------- 605 (767)
..++...|.+.|.++.+.. +.....|..+ ..++.+.++..+++..+.+.++..|......+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999853 4456788777 577777888889998898888877765554444
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHh
Q 047305 606 -----------SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPS 672 (767)
Q Consensus 606 -----------l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 672 (767)
++..+...|++++|.+.+..+.. ..|.+. ....++.++.+.|+|++|+..|++..... .|. ..+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 67889999999999999988543 347777 78999999999999999999999776542 221 347
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PR-VCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+..++.++...|++++|+..|+++......|. .. .......++. +.|+ .++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr-~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGN-ESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhc
Confidence 88899999999999999999999985332254 32 3444555555 8888 99999999999875
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.96 E-value=9.5e-08 Score=92.60 Aligned_cols=183 Identities=9% Similarity=-0.096 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC-HHHHHHHH
Q 047305 547 EEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR--KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE-VENAIQGL 623 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~ 623 (767)
+++++.+++.++... +.+..+|..-..++.+.| .+++++++++++++.+|.|..++.....+....|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456777777776643 345556655555555556 36777777777777777777777777777777776 46776666
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhc--------------CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc------
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQD--------------GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR------ 683 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 683 (767)
.++-. .+|.+..+|+..+.++... +.++++++++++++..+ |.|..+|+.+.+.+...
T Consensus 169 ~~~I~-~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT-RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH-HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH-HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 66322 3577777777777776665 45788888888888887 77888887777777765
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hhcCCccHHHHHHHHHHHHHc
Q 047305 684 -----GYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL----LFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 684 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+.++++++.++++++.. |+.. +..+...+ ....|. .+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~--pd~~-w~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE--PENK-WCLLTIILLMRALDPLLY-EKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTTT-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--cccc-hHHHHHHHHHHhhccccc-HHHHHHHHHHHHHh
Confidence 46788888888888744 7763 33322221 213444 67888888888754
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.94 E-value=7.5e-09 Score=86.34 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+..++..+.+.|++++|++.|+++++.+|.++.++.+++.+|...|++++|++.+.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 344455555555555555555555555554444444444444444444444444443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=1.3e-08 Score=84.68 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=73.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..++..+...|++++|.+.|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCccHHHHHHHHHHH
Confidence 445556666667777777777777777766666666666666666666666666666655322 2355555566666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
...|++++|+..++++.+.. |.++..+..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 66677777777777666665 55556666666555443
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=2.4e-07 Score=90.55 Aligned_cols=163 Identities=9% Similarity=0.055 Sum_probs=120.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccc------hHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCC----ccchHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDE------SMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQ----LAPYTI 640 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~----~~~~~~ 640 (767)
.+..+...|++++|...++++++..+..+.. +..++..+...|++++|+..+.+. .......+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566788999999999999999877766552 224778888899999999999984 32212222 225899
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-HHHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVEC------KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG----FILR-PRVCN 709 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~ 709 (767)
+|.+|...|++++|+.+|+++++. ..+....++..++.+|...|++++|+.+++++++.. ..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999841 212224478899999999999999999999998632 1122 22344
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 710 YLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 710 ~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+...+. ..|+.+++|...+++...
T Consensus 241 ~lg~~~~-~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLR-KLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCcHHHHHHHHHHHHH
Confidence 4444444 777536999999998764
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=1.2e-07 Score=92.20 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=167.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-C-Ch
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-R-KF 582 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 582 (767)
..+.+..++|+++++.++..+.. +..+|+.-..++...| .+++++.+++.++... +.+..+|..-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 34455667899999999987433 4556777777788888 5999999999999864 45667777666666666 7 89
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC----
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE--------NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ---- 650 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---- 650 (767)
++++++++++++.+|.+..++.....+..+.|.++ ++++.+.++-. .+|.+..+|+..+.++.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-VDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999988888877776 78887777432 369999999999999999887
Q ss_pred ---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC----CCC
Q 047305 651 ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL--------------------DLAMDVFLYTLKNG----FIL 703 (767)
Q Consensus 651 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~~~ 703 (767)
++++++.+++++..+ |.|..+|+.+..++.+.|+- .+.......+.... ..+
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 799999999999997 88999999999999887764 12222222221111 112
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 704 ~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+.....++.-.+...|+ .++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~-~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNR-VDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 233333333333336776 8999999999864
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=7.6e-09 Score=86.48 Aligned_cols=96 Identities=6% Similarity=-0.082 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+...+..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... .+|.++.+|..++.+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHH
Confidence 3444555555566666666666666555555555555555555555555555444444211 134444445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 047305 648 DGQVKEALNIFSVLVEC 664 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~ 664 (767)
.|++++|+..|+++++.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.91 E-value=8.6e-09 Score=86.15 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=88.3
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
....+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..++++++.+ |.++.++..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345667889999999999999999998422 358899999999999999999999999999999987 888999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047305 679 GLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+|...|++++|+..|+++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=6.1e-09 Score=93.25 Aligned_cols=126 Identities=6% Similarity=0.047 Sum_probs=100.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH-HHhcCCH--HH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE-FLQKGEV--EN 618 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~ 618 (767)
...|++++|...+++.++.. +.+...+..++.+|...|++++|...|+++++..|.++.++..++.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677888888888887653 45677888888888889999999999999999999888888888888 7788888 88
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++
T Consensus 100 A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALA-LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN-SPRI 149 (177)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTS
T ss_pred HHHHHHHHHH-hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCc
Confidence 9888887432 358888889999999999999999999999998886 4444
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.89 E-value=1.1e-08 Score=85.27 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=86.2
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh-------Hh
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP-------PS 672 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~ 672 (767)
.++..+|..+.+.|++++|+..+.+ +. .+|.++.+|..++.+|...|++++|++.++++++.+ |.+. .+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHH
Confidence 3456789999999999999999988 44 369999999999999999999999999999998765 3322 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+..+|.++...|++++|++.|++++.. .|++.+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 778899999999999999999999874 377665433
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.89 E-value=1.2e-08 Score=93.18 Aligned_cols=123 Identities=7% Similarity=-0.117 Sum_probs=68.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc----------------cchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD----------------DESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
...+..++..+.+.|++++|+..|+++++..|.++ .++..++.+|...|++++|+..+.+...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 34455666667777888888888888887777666 3444455555555555555555444211
Q ss_pred CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
..|.++.++..++.+|...|++++|+..|+++++.. |.++.++..++.++...|+.+++.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 134455555555555555555555555555555544 444555555555555554444444
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.88 E-value=1.1e-08 Score=90.09 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=72.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..+...+.+.|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... .+|.++.+|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Confidence 3456666677777777777777777777777777777777777777777777777666666321 246666667777777
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
|...|++++|+..|+++++.. |.++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE-GNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-SSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 777777777777777776665 4444433
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=2.6e-08 Score=81.94 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 34445555555666666666666666655555555555555555555555555544444211 12444444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
..|++++|...++++.+.+ |.++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 5555555555555555443 3344443333
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.88 E-value=6e-07 Score=86.99 Aligned_cols=223 Identities=8% Similarity=-0.050 Sum_probs=169.0
Q ss_pred hcCCH-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 473 TAGLI-HKAYKILMQLAESGNLPDIITYNSLINGFCKVGN----------INGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 473 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
+.|.+ ++|+..++.++..++. +...|+.--..+...+. +++++.+++.+.....+ +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44554 4799999999887533 56667665555544443 67899999999987544 777888888888
Q ss_pred HhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhccCCCccchHHHHHHHHhc-----
Q 047305 542 QRVD--REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK-FSLAFSLWLQYLRDISGRDDESMKSIEEFLQK----- 613 (767)
Q Consensus 542 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 613 (767)
...+ .+++++.++.++.+.. +.+...|..-.-++...|. ++++++.++++++.+|.|..+++..+.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 8877 4899999999999864 4566677666666777888 59999999999999999999999988887765
Q ss_pred ---------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-----------CCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 614 ---------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-----------GQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 614 ---------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
+.++++++.+.+.-. .+|++..+|+-+.+++... +.++++++.++++++.. |.+.-++
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~-~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l 275 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF-TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWCL 275 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchHH
Confidence 457788888887322 3599999999888888777 46899999999999986 5554333
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHHCC
Q 047305 674 VKLIHGL---CKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 674 ~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 700 (767)
..++... ...|..++....+.++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3333222 14677889999999998743
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=1.4e-09 Score=99.50 Aligned_cols=155 Identities=10% Similarity=-0.092 Sum_probs=109.2
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----------------cchH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----------------APYT 639 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----------------~~~~ 639 (767)
....|.+++|.+.|+...+..+.....+..++..+...|++++|+..+.+... ..|.++ .++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHH
Confidence 44567777777777665555566667788899999999999999999998432 235555 6799
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSK 719 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 719 (767)
.++.+|...|++++|+..++++++.. |.++.++..++.+|...|++++|+..|+++++.. |+.......+..+....
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 7889999999999999999999999999998854 76655454444444344
Q ss_pred CccHHHHH-HHHHHHHH
Q 047305 720 DNKKVHAY-HLLCRMKS 735 (767)
Q Consensus 720 ~~~~~~a~-~~~~~~~~ 735 (767)
++ .+++. ..++++-.
T Consensus 170 ~~-~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 170 KE-ARKKDKLTFGGMFD 185 (198)
T ss_dssp HH-HHC-----------
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 44 44444 44444443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=1e-08 Score=94.22 Aligned_cols=155 Identities=11% Similarity=-0.118 Sum_probs=89.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh------ccCCCccchHHHHHHHHhcCCHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR------DISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.|++++|.++++.+.. .......++..+..++...|++++|...++++++ ..|....++..++.++...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 1112344445555555555555555555555554 22223334445556666666666
Q ss_pred HHHHHHHH-hhh-cCCC----CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCh
Q 047305 618 NAIQGLLE-MDF-KLND----FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-IVT----PPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 618 ~A~~~~~~-~~~-~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 686 (767)
+|+..+.+ +.. ...+ ....++..++.++...|++++|+..++++++... ..+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66555555 111 0012 1234588889999999999999999999864311 111 23457889999999999
Q ss_pred hHHHHHHHHHHHC
Q 047305 687 DLAMDVFLYTLKN 699 (767)
Q Consensus 687 ~~A~~~~~~~~~~ 699 (767)
++|...++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=1.2e-07 Score=92.88 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC----cc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ----LA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~----~~ 636 (767)
.+...+..+...|++++|.+.+.+.++..+.... .+..++..+...|++++|+..+.+ +.......+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444566788999999999999999988776543 234567788889999999999888 332111111 33
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHH---HcCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CC-
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLV---ECKAIVT----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI----LR- 704 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~- 704 (767)
+++.+|.+|...|++++|+.+|++++ +.. +.+ ..++..++.+|...|++++|+.+++++++.... ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 68999999999999999999999997 332 222 258889999999999999999999999864211 11
Q ss_pred HHHHHHHHHHHhhcCCccHHHH-HHHHHHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHA-YHLLCRMKS 735 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a-~~~~~~~~~ 735 (767)
...+..+...+. ..|+ +++| ...+++...
T Consensus 236 ~~~~~~lg~~y~-~~g~-~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLR-KLEY-EEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHH-HTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCC-cHHHHHHHHHHHHH
Confidence 223333444444 7887 8899 777887653
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=3.6e-08 Score=87.06 Aligned_cols=128 Identities=9% Similarity=-0.001 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|...++++++..|.++.++..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35555566666777777777777766542 33566666677777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHH--HHhhcCCHHHHHHHHHHHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLI--GLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 662 (767)
.|++++|+..+.+... ..|.+...+..++. .+...|++++|++.+++..
T Consensus 94 ~~~~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVK-VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777766321 24666555533333 3666778888888777764
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=1.8e-08 Score=85.67 Aligned_cols=99 Identities=11% Similarity=-0.079 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|.++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCchhHHHHHHHHHH
Confidence 4455555556666666666666666666665555555555555555555555555555554211 235555555555555
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 047305 645 LCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~ 664 (767)
|...|++++|+..|+++++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.1e-08 Score=84.59 Aligned_cols=111 Identities=14% Similarity=-0.025 Sum_probs=94.8
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|.....+..++..+...|++++|+..+.+... ..|.+..++..++.+|...|++++|+..++++++.. +.++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 355566778899999999999999999998432 358888889999999999999999999999999987 778899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.+|...|++++|+..|+++++.. |+......
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 122 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAAD 122 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHH
Confidence 9999999999999999999998754 65544333
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=3.5e-08 Score=80.17 Aligned_cols=103 Identities=10% Similarity=-0.076 Sum_probs=68.0
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC--ChHhH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV--TPPSC 673 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 673 (767)
.|.+...+..++..+...|++++|+..+.+... ..|.+..++..++.++...|++++|+..++++++.. +. +..++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 355666666666666666777766666666321 235566667777777777777777777777777665 55 56667
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCC
Q 047305 674 VKLIHGLCKR-GYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 674 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 700 (767)
..++.++... |++++|++.+++++...
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777777 77777777777776543
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=5.1e-08 Score=81.05 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=90.9
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 047305 600 DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHG 679 (767)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 679 (767)
...+..++..+...|++++|++.+.+... ..|.++.++..++.++...|++++|+.+++++.+.. +.++.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45677889999999999999999988432 257788889999999999999999999999999886 7788899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 680 LCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
|...|++++|...++++++.. |+......
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 115 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQ 115 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 999999999999999998754 65444333
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=2.1e-08 Score=82.75 Aligned_cols=94 Identities=7% Similarity=-0.080 Sum_probs=58.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 682 (767)
+..++..+.+.|++++|+..+.+... ..|.++.+|..++.++...|++++|+..|+++++.+ |.++.++..++.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34455555566666666555555221 236666666666666666666666666666666665 5566666666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 047305 683 RGYLDLAMDVFLYTLK 698 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~ 698 (767)
.|++++|+..|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=1.7e-08 Score=83.19 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..++..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.. ..+|+++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999999999999999999999998888832 2358888889999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 047305 648 DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~ 665 (767)
.|++++|+..++++++.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998765
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=6.4e-08 Score=85.17 Aligned_cols=107 Identities=8% Similarity=-0.068 Sum_probs=93.6
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
+.+...+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+ |.++.++..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33455677889999999999999999998432 358899999999999999999999999999999997 8889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.+|...|++++|+..|+++++.. |+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE--GNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--SSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCchH
Confidence 999999999999999999998854 66543
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=3.2e-08 Score=83.12 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=94.2
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|.+...+..++..+...|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++.+.. |.++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE-LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 345556777889999999999999999998432 258888889999999999999999999999999886 778899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.++...|++++|...|+++++.. |+......
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 118 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELD--PDNETYKS 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHH
Confidence 9999999999999999999998864 65444333
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=3.9e-08 Score=83.54 Aligned_cols=104 Identities=13% Similarity=-0.087 Sum_probs=91.4
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
..|.++..+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 3566778888999999999999999999988422 358888899999999999999999999999999987 78899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.++.+|...|++++|+..|+++++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999999998743
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=1e-07 Score=79.92 Aligned_cols=94 Identities=15% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc---cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHhHHHHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL---APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPSCVKLI 677 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 677 (767)
..++..+...|++++|+..+.+... ..|.++ .++..++.+|...|++++|+..|+++++.. |.+ +.++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3444444444555555444444211 123333 345556666666666666666666665554 344 44555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+|...|++++|+..|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666553
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=7.8e-08 Score=82.88 Aligned_cols=101 Identities=15% Similarity=-0.066 Sum_probs=53.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|+++++..|.++. ...++..++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~a~~ 74 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------------------------QAVLHRNRAAC 74 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--------------------------------HHHHHHHHHHH
Confidence 3444555555555556666666666555555544300 02335555555
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++
T Consensus 75 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 75 HLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555543 44455555555555555555555555555554
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.75 E-value=1.4e-07 Score=79.06 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---ccchHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIWL 642 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l~ 642 (767)
+..++..+...|++++|...|+++++..|.++ .++..++.++...|++++|+..+.+... ..|++ +.++..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-RYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HCCCCcccHHHHHHHH
Confidence 44566778899999999999999999999888 6888999999999999999999988432 24777 66799999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+|...|++++|+..|+++++.. |.++.+.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY-PGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 99999999999999999998876 66655544433
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.2e-07 Score=77.89 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=91.1
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
..+..++..+...|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++.+.. |.++.++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK-LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4567788999999999999999998432 358888889999999999999999999999999887 77889999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 681 CKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
...|++++|...++++++.+ |+.......+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE--ANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999999999998744 6655444333
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.74 E-value=4e-08 Score=86.32 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--------CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--------SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
...+...+..+.+.|++++|+..|.++++.. |.++. ...+ .|.+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~---------------------~~~~----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE---------------------WVEL----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH---------------------HHHH----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH---------------------HHHH----HHHHHHH
Confidence 3455666777788888888888888887652 22111 0011 2555567
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLL 712 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 712 (767)
|..++.+|.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+.. .+...+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~l 138 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 8888888888888888888888888886 7778888888888888888888888888888754 6655 444433
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=3.9e-08 Score=102.98 Aligned_cols=118 Identities=12% Similarity=0.029 Sum_probs=73.0
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
.+.+.|++++|++.|+++++..|.+..++..++.+|.+.|++++|++.+.+.. ...|.++.++..++.+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456666666666666666666666666666666666666666666666632 13466666666677777777777777
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHH--HHhcCChhHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHG--LCKRGYLDLAMDVFL 694 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 694 (767)
++.|+++++.. |.++.++..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766665 5555566666655 666666777776666
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.72 E-value=5.9e-09 Score=108.81 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=84.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..+...|.+.|++++|+..|+++++..|.++.... +.. ..+. +....+|..++.+|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------~~~-~~~~-------~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------KES-KASE-------SFLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------HHH-HHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------HHH-HHHH-------HHHHHHHHHHHHHH
Confidence 345555566666666666666666666666665532110 000 0000 11134577788888
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 725 (767)
.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++. .|+.......+..++...++ +++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~-~~~ 403 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKE-HNE 403 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHH-HHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH-HHH
Confidence 88888888888888887776 667777778888888888888888888887763 46655544444444435554 444
Q ss_pred HH-HHHHHHH
Q 047305 726 AY-HLLCRMK 734 (767)
Q Consensus 726 a~-~~~~~~~ 734 (767)
+. .++++|-
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 33 3444443
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=9.3e-08 Score=87.68 Aligned_cols=158 Identities=11% Similarity=-0.058 Sum_probs=112.3
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh-----cCCCCCccchHHHHHHHhhcCCH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF-----KLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
...|++++|.+.++.+....+....++..++..+...|++++|+..+.+... ...|....++..++.+|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4679999999965555443335566778899999999999999999888321 12244456799999999999999
Q ss_pred HHHHHHHHHHHHc--CCC----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHH---HHHHHHHHhhcCCc
Q 047305 652 KEALNIFSVLVEC--KAI----VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI-LRPRV---CNYLLRSLLFSKDN 721 (767)
Q Consensus 652 ~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~---~~~l~~~l~~~~~~ 721 (767)
++|+..++++++. ..+ ....++..++.++...|++++|...++++++.... .++.. ....+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999998754 112 12456888999999999999999999999753111 12221 11233333337888
Q ss_pred cHHHHHHHHHHHHH
Q 047305 722 KKVHAYHLLCRMKS 735 (767)
Q Consensus 722 ~~~~a~~~~~~~~~ 735 (767)
+++|...+++..+
T Consensus 163 -~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 -LLEAQQHWLRARD 175 (203)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 9999999988764
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.6e-07 Score=80.96 Aligned_cols=106 Identities=11% Similarity=-0.117 Sum_probs=87.1
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
.|.+...+..++..+...|++++|+..|+++++.. +.+ ..++..++.+|...|++++|+..++++++.. |+...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 100 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVK 100 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHH
Confidence 46677789999999999999999999999999876 444 7889999999999999999999999998854 65444
Q ss_pred -HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 708 -CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 708 -~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+..+...+. ..|+ +++|...+++.... .|+..
T Consensus 101 ~~~~~a~~~~-~~~~-~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 101 ALYRRSQALE-KLGR-LDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp HHHHHHHHHH-HHTC-HHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHHHH-HcCC-HHHHHHHHHHHHHc--CCCcH
Confidence 444444444 7887 99999999998875 46554
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.71 E-value=1.5e-08 Score=83.20 Aligned_cols=86 Identities=10% Similarity=-0.014 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHHhc---cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRD---ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
.|++++|+..|+++++. .|.++.++..++.+|...|++++|+..+.+... ..|+++.++..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777766 354555555555555555555555555555211 13555555555555555555555555
Q ss_pred HHHHHHHHcC
Q 047305 656 NIFSVLVECK 665 (767)
Q Consensus 656 ~~~~~~~~~~ 665 (767)
..++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 5555555443
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.70 E-value=3.5e-08 Score=83.22 Aligned_cols=109 Identities=13% Similarity=-0.093 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+...+..+.+.|++++|+..|+++++..|.++..- + . ...|.+..+|.+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---------------a------~--~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---------------A------F--DHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---------------C------C--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---------------h------h--hhccchHHHHHHHHHHHH
Confidence 3445566677889999999999999999888865430 0 0 001222335888888888
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCChHhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 647 QDGQVKEALNIFSVLVEC-------KAIVTPPSC----VKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+.|++++|+..++++++. + |.+...| ...+.++...|++++|+..|+++++.
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888888888888877 6 6667777 88888888888888888888888773
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=7.3e-08 Score=80.89 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-------ccchHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-------LAPYTI 640 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-------~~~~~~ 640 (767)
.+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+.... .|.+ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccccchhHHHHHHHHHH
Confidence 44445555555666666666666655555555444444455555555555554444441110 1111 333445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
++.+|...|++++|+..|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=2.9e-07 Score=74.64 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=86.8
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHH-
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRV- 707 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~- 707 (767)
.|.++..+..++.++...|++++|+..++++++.. +.++.++..++.++...|++++|+..++++++.. |+ ...
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 78 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDV 78 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHH
Confidence 47888889999999999999999999999999987 7788999999999999999999999999999854 65 444
Q ss_pred HHHHHHHHhhcC-CccHHHHHHHHHHHHHc
Q 047305 708 CNYLLRSLLFSK-DNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 708 ~~~l~~~l~~~~-~~~~~~a~~~~~~~~~~ 736 (767)
+..+...+. .. |+ +++|.+.+++....
T Consensus 79 ~~~l~~~~~-~~~~~-~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALR-YIEGK-EVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHT-TCSSC-SHHHHHHHHHHGGG
T ss_pred HHHHHHHHH-HHhCC-HHHHHHHHHHHhhc
Confidence 444444444 78 87 99999999998865
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.68 E-value=2.7e-08 Score=87.36 Aligned_cols=100 Identities=13% Similarity=-0.057 Sum_probs=80.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc------------------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC------------------KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+...|..+.+.|++++|+..|+++++. + +.+..++..++.+|.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 667788888888888888888888776 4 567788999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 700 GFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 700 ~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
. |+.....+.++..+...|+ +++|...+++.... .|+..
T Consensus 93 ~--p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E--ETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S--TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CGGGH
T ss_pred C--CcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhc--CCCCH
Confidence 4 7755544444444448888 99999999998875 56654
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.68 E-value=9.6e-08 Score=99.62 Aligned_cols=141 Identities=12% Similarity=-0.016 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--------------HhhHHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--------------PAVYKSLMTW 575 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 575 (767)
++++|+..|+..... .| ....+..+...+.+.|++++|+..|+++++...... ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344555544443332 22 345688888999999999999999999987421111 3444455555
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
|.+.|++++|+..|+++++..|.++.+++.++.+|...|++++|+..+.+.. ...|.+..++..++.++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444444444444444444444444321 12344444444444444444444333
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.65 E-value=1.2e-07 Score=79.46 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=89.5
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-------hHh
Q 047305 600 DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-------PPS 672 (767)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~ 672 (767)
+..+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. +.+ +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 34567789999999999999999998432 258888889999999999999999999999998775 444 778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+..++.+|...|++++|...|+++++.. |++.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 117 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 9999999999999999999999998854 66544443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.64 E-value=1e-07 Score=95.97 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..+...+.+.|++++|+..|+++++..+..+ .....+++ ....|.+..+|..++.+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAEDADG--------AKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCHHHH--------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccChHHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 455667777788888888888888876432211 00011111 01224455567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
.|++++|++.++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+.......+..+....++ .+++
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~-~~~a 360 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKA-QKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 777777777777777765 6667777777777777777777777777777643 5544444444444334444 4443
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=9.2e-07 Score=94.17 Aligned_cols=173 Identities=9% Similarity=-0.078 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-
Q 047305 512 INGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR----------EEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR- 580 (767)
Q Consensus 512 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 580 (767)
.++|++.++.+...+.+ +..+|+.-..++...|+ +++++..++.+++.. +.+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45677777777766322 34456655555555555 777788887777653 445666666666666777
Q ss_pred -ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----------
Q 047305 581 -KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---------- 648 (767)
Q Consensus 581 -~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------- 648 (767)
+++++.+.++++++.+|.+..+|...+.+....| .++++++.+.++- +.+|.+..+|+..+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 5688888888888888888888888888887777 7777777766642 34677777888888877763
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 047305 649 ----GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL 688 (767)
Q Consensus 649 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 688 (767)
+.+++|++++++++..+ |.+..+|..+.+++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788888888888887 7788888888888888777554
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.61 E-value=2e-07 Score=81.67 Aligned_cols=130 Identities=14% Similarity=-0.025 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCc------cchHHHHHHHHhcCCHHHHHHHHHHh-hh--c--CCCCCccc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD------DESMKSIEEFLQKGEVENAIQGLLEM-DF--K--LNDFQLAP 637 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~--~~p~~~~~ 637 (767)
+..+...+...|++++|...++++++..+... .++..++..+...|++++|+..+.+. .. . ..+....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33344444444444444444444443322211 13334444444445555444444441 10 0 00111335
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..++.++...|++++|+..++++++... +....++..++.+|...|++++|...++++++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77888888888888888888888764310 11244677788888888999999988888865
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.60 E-value=4.2e-08 Score=97.76 Aligned_cols=149 Identities=12% Similarity=0.007 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+...+.+.|++++|+..|+++++..|.+. .+...|+..++...+. ..+|..++.+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4455677778888999999999999988877654 1234455555543332 124888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
+.|++++|+..++++++.+ |.+..++..++.+|...|++++|+..|+++++ +.|+.......+..+........+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887 77888999999999999999999999999875 44766655555554432333337788
Q ss_pred HHHHHHHHHc
Q 047305 727 YHLLCRMKSV 736 (767)
Q Consensus 727 ~~~~~~~~~~ 736 (767)
..++++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888754
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=3.5e-07 Score=77.13 Aligned_cols=93 Identities=12% Similarity=-0.102 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC-------Ch-----HhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV-------TP-----PSCVKLIHGLCKRGYLDLAMDVFLYTLKN-----GFI 702 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 702 (767)
..|..+.+.|++++|+..|+++++.+ |. +. .+|..++.++.+.|++++|+..++++++. .+.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 45667778888888888888887765 33 22 38999999999999999999999999984 115
Q ss_pred CCHHHHH-----HHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 703 LRPRVCN-----YLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 703 ~~~~~~~-----~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
|+..... ....++. ..|+ +++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~-~lgr-~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALD-GLGR-GAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHH-HCCC-HHHHHHHHHHHHh
Confidence 8866544 4555555 8898 9999999999774
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.57 E-value=1.1e-06 Score=93.49 Aligned_cols=170 Identities=8% Similarity=-0.063 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-
Q 047305 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK----------FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG- 614 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 614 (767)
..++|++.++++++.+ +.+..+|..-..++...|+ ++++.+.++++++.+|.+..+|...+.++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 4468899999998854 3455667666666666777 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---------
Q 047305 615 -EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR--------- 683 (767)
Q Consensus 615 -~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 683 (767)
+++++++.+.++-. .+|.+..+|+..++++.+.| .++++++.++++++.+ +.+..+|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~-~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE-ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh-hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 77999998888432 46999999999999999999 9999999999999998 88999999999998874
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCc
Q 047305 684 -----GYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDN 721 (767)
Q Consensus 684 -----g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~ 721 (767)
+.+++|++++++++... |+.. .|.++...+. ..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~-~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLG-RAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHS-CCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHh-cCCC
Confidence 56799999999999855 6654 4666554443 4443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=5.2e-08 Score=79.92 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHhhhcC--CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 612 QKGEVENAIQGLLEMDFKL--NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
..|++++|+..+.+..... +|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888988888843221 47778889999999999999999999999999987 88899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 047305 690 MDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~ 707 (767)
+..++++++.. |+++.
T Consensus 81 ~~~~~~al~~~--p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAET--SDDET 96 (117)
T ss_dssp HHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHhC--CCcHH
Confidence 99999998854 55543
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.9e-06 Score=89.78 Aligned_cols=165 Identities=5% Similarity=-0.083 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC------Cccc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSP----AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG------RDDE 602 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~ 602 (767)
+..++..|...|++++|.+++..+...- ..++. .+...+...+...|++++|..++.+++...+. ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555544310 00111 11222222333445566666666555532111 1223
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhc-----CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCC----hH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFK-----LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC--KAIVT----PP 671 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~ 671 (767)
+..++..|...|++++|...+.++... ..+....++..++.+|...|++++|..++++++.. ..+.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 345566666666666666655552110 11223345667777777777777777777776432 11111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+..++..+...|++++|...|.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445556666677777777777766654
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=4.7e-07 Score=94.79 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
...+.+.|++++|++.+++..+.... +...+..+..++.+.|++++|+..++++++.. +.+...+..++.+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34455666677777777666665211 34566666666666666666666666666642 33455666666666666666
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHH--HHhcCCHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEE--FLQKGEVENAIQGLL 624 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 624 (767)
++|.+.|+++++..|.+..++..++.+ +.+.|++++|++.+.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666666666666666655555 556666666666655
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-07 Score=79.17 Aligned_cols=110 Identities=11% Similarity=-0.032 Sum_probs=65.9
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.+.+.+++|++.++++++.+|.++.++..++.++...|+++.+...+ +.+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 35567788888888888888888888888888877776654221110 12455555
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRG-----------YLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
.|+++++.+ |.+..+|+.++.+|...| ++++|+.+|+++++. .|+...+...+..
T Consensus 68 ~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 68 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 555555554 445555555555555442 566666666666553 3555544444443
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=6.6e-07 Score=90.03 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=79.6
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH----------------cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE----------------CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF 701 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 701 (767)
+..++..+.+.|++++|+..|+++++ .. +.+..++..++.+|.+.|++++|+..++++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 66778888888888888888888876 44 667889999999999999999999999999975
Q ss_pred CCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 702 ILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 702 ~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
.|+.....+.++..+...|+ +++|...+++..+. .|+..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l--~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEI--APEDK 341 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCH
T ss_pred CchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCH
Confidence 47655544444444448888 99999999998875 46544
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=3.5e-07 Score=91.11 Aligned_cols=147 Identities=8% Similarity=0.006 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC 577 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (767)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3444555555566666666666665543 222221 112222333222211 124555666666
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh-hcCCHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC-QDGQVKEALN 656 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 656 (767)
+.|++++|+..|+++++..|.+..+++.++.+|...|++++|+..+.+.. ...|.+..++..++.+.. ..+..+++..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666655555521 123555555555555422 2344555555
Q ss_pred HHHHHHHc
Q 047305 657 IFSVLVEC 664 (767)
Q Consensus 657 ~~~~~~~~ 664 (767)
.|+++...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 55555544
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.4e-06 Score=85.29 Aligned_cols=166 Identities=8% Similarity=-0.122 Sum_probs=118.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc------hHHHHHHHHhcCCHHHHHHHHHHh-h----hcCCCCCcc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE------SMKSIEEFLQKGEVENAIQGLLEM-D----FKLNDFQLA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~-~----~~~~p~~~~ 636 (767)
.+..++..|.+.|++++|.+.+.++++..+..... ...++..+...|++++|+..+.+. . ....+....
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35678889999999999999999998765554332 234566667789999998888772 1 112233345
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-H---
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILRP-R--- 706 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~--- 706 (767)
++..++.+|...|++++|+.+++++..... +....++..++.+|...|++++|..++++++... -.+++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 688999999999999999999999864311 1124578889999999999999999999987531 01222 1
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 707 VCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 707 ~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
.+...+..+....|+ +++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~-y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKD-YKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 222234444446676 999988887765
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.41 E-value=4.4e-07 Score=76.32 Aligned_cols=98 Identities=10% Similarity=-0.081 Sum_probs=75.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL----------DLAMDVFLYTLKNGFILRPR-VCNYLLRS 714 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 714 (767)
.+.+.+++|++.++++++.+ |.++..|..++.++...|++ ++|+..|+++++.+ |+.. .+..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34567888888888888887 78888888888888887765 59999999999854 7755 45555555
Q ss_pred HhhcC-----------CccHHHHHHHHHHHHHcCCCCCCcchhhhhh
Q 047305 715 LLFSK-----------DNKKVHAYHLLCRMKSVGYDLDACLYPKTKS 750 (767)
Q Consensus 715 l~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 750 (767)
+. +. |+ +++|.+.|++..+. .|+...|...+.
T Consensus 90 y~-~lg~l~P~~~~a~g~-~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YT-SFAFLTPDETEAKHN-FDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HH-HHHHHCCCHHHHHHH-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HH-HhcccCcchhhhhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 55 44 35 99999999999875 788888766543
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=1e-06 Score=77.04 Aligned_cols=139 Identities=15% Similarity=0.022 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLR-PDS----VTYGTLINGLQRVDREEDAFRIFGQMPQN----GCTP-SP 566 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~ 566 (767)
.++..+...+...|++++|+..+++....... ++. .++..+...+...|++++|...++++.+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666666666666665543110 011 23444555555555555555555555431 0000 02
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+..++...|++++|...++++++..+.. ...+.....+..++.+|.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------------~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-----------------------------KDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------------------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-----------------------------cchHhHHHHHHHHHHHHH
Confidence 233344444445555555555544443211100 001122345788899999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 047305 647 QDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~ 664 (767)
..|++++|++.++++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.32 E-value=1.3e-06 Score=71.11 Aligned_cols=80 Identities=8% Similarity=-0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+|++.|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666655555555555555555555555555211 2355555555555555555666666655555554
Q ss_pred c
Q 047305 664 C 664 (767)
Q Consensus 664 ~ 664 (767)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.32 E-value=1.6e-06 Score=68.42 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=59.3
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+|+++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 58888889999999999999999999999999887 778889999999999999999999999998763
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.30 E-value=5e-06 Score=86.15 Aligned_cols=131 Identities=4% Similarity=-0.085 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHhhhC-----CC-CC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 541 LQRVDREEDAFRIFGQMPQN-----GC-TP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+...|++++|+.++++.++. |. .| ...+++.++.+|...|++++|..++++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-------------------- 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-------------------- 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------------
Confidence 45667777777777666541 10 11 24466666777777777777777766554
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCChHh---HHHHHHHHHhcCC
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTPPS---CVKLIHGLCKRGY 685 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~ 685 (767)
....+.-....|+....+++|+.+|...|++++|+.+++++++ .| +..|.+ ...+..++...|+
T Consensus 379 -------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 -------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp -------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 3333333333456666789999999999999999999999863 44 444443 4567778888888
Q ss_pred hhHHHHHHHHHHHC
Q 047305 686 LDLAMDVFLYTLKN 699 (767)
Q Consensus 686 ~~~A~~~~~~~~~~ 699 (767)
+++|..+|+++.+.
T Consensus 451 ~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 451 FRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888888653
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.30 E-value=8.5e-06 Score=78.93 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=106.4
Q ss_pred CCCCHhhHHHHHHHH--Hhc---CChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---C--C--HHHHHH-HHHH-hh
Q 047305 562 CTPSPAVYKSLMTWS--CRR---RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---G--E--VENAIQ-GLLE-MD 627 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~--~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g--~--~~~A~~-~~~~-~~ 627 (767)
.+.+...|...+.+. ... ....+|+.+|+++++.+|+...++..++.+|... + . ...++. .+.. ..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355667777766553 222 3457899999999999999988888776666421 1 1 111111 1111 12
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
....|.++.+|..++..+...|++++|+..+++++..+ |+...+..+++++...|++++|.+.|+++++.+ |...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 23458888889999888888899999999999999987 677788899999999999999999999999854 88776
Q ss_pred HHH
Q 047305 708 CNY 710 (767)
Q Consensus 708 ~~~ 710 (767)
+..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=4.3e-06 Score=86.63 Aligned_cols=104 Identities=9% Similarity=-0.044 Sum_probs=78.2
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN--- 699 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 699 (767)
.|+...++++|+.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|...|++++|+.+++++++.
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556799999999999999999999999863 33 3333 45788999999999999999999998762
Q ss_pred CCCCCHHHHHH---HHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 700 GFILRPRVCNY---LLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 700 ~~~~~~~~~~~---l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
-+.|+++.... ++.......+. +++|..+++++++.
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~~~-~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMELRM-FRQNEFMYHKMREA 464 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 23377654443 33333335666 89999999999864
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.2e-07 Score=72.15 Aligned_cols=88 Identities=9% Similarity=0.049 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC------hHhHHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT------PPSCVKLIH 678 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 678 (767)
.++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|++.++++++.. |.+ ..++..++.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLIT-AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHH
Confidence 344444444444444444444211 134445555566666666666666666666665554 333 445555555
Q ss_pred HHHhcCChhHHHHHHH
Q 047305 679 GLCKRGYLDLAMDVFL 694 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~ 694 (767)
++...|+.++|+..++
T Consensus 87 ~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 87 AQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHCCCCCSSSSS
T ss_pred HHHHHHhHhhhHhHHH
Confidence 5555555555554443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=7e-07 Score=72.24 Aligned_cols=94 Identities=11% Similarity=-0.062 Sum_probs=64.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC------ccchH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ------LAPYT 639 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~------~~~~~ 639 (767)
...+..++..+...|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.. ...|++ ..++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHH
Confidence 44556666677777777777777777777777777777777777777777777777777632 234665 55566
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~ 660 (767)
.++.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 677777777766666655443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=5.8e-06 Score=63.76 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=33.3
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..+..++.++...|++++|+..++++++.. |.++.++..++.+|...|++++|+..++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 335555555555555555555555555544 44455555555555555555555555555554
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=2.3e-05 Score=65.98 Aligned_cols=110 Identities=9% Similarity=-0.114 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALN 656 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 656 (767)
++++|...|+++.+..... +. ++..|...+..++|++.+.+... ..++.++..|+.+|.. .+++++|+.
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~---~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACE---LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4555555555555543222 22 55555555555556555555322 2344557777777776 677777777
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
+|+++.+.+ ++.+...|+.+|.. .++.++|...|+++.+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777654 45667777777777 777777777777777654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.13 E-value=7.7e-06 Score=63.03 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=72.8
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+...+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456778899999999999999999998432 358888889999999999999999999999999987 778889999998
Q ss_pred HHHhcC
Q 047305 679 GLCKRG 684 (767)
Q Consensus 679 ~~~~~g 684 (767)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 887654
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=1.3e-05 Score=65.14 Aligned_cols=79 Identities=13% Similarity=-0.061 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|+..+.+.. ...|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++
T Consensus 4 a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555532 2468899999999999999999999999999999987 78889999999999999999999999999987
Q ss_pred C
Q 047305 699 N 699 (767)
Q Consensus 699 ~ 699 (767)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=1.2e-05 Score=63.25 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=51.9
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
.+|.++.++..++.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|++.|+++++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVE-TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3577777788888888888888888877777322 34777778888888888888888888888888765
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=5.5e-05 Score=63.56 Aligned_cols=111 Identities=10% Similarity=-0.099 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAI 620 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 620 (767)
+++++|...|++..+.| .+... +..+|...+..++|.+.|+++.+. .++.+.+.++..|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45677888888877766 33332 666666667777788888888765 567777888888877 78888888
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 665 (767)
+.+.+... ..++.++..|+.+|.. .+++++|+.+|+++.+.|
T Consensus 82 ~~~~~Aa~---~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACG---LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887443 2456678999999998 799999999999999887
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=3.8e-05 Score=58.78 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=57.2
Q ss_pred CCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.|+++..+..++.+++..++ .++|..+++++++.+ |.++.++..++..+...|++++|+.+|+++++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 47778888888888865544 688999999998887 8888888889999999999999999999888754
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.85 E-value=6.9e-05 Score=76.22 Aligned_cols=78 Identities=6% Similarity=-0.169 Sum_probs=56.2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---C
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN---G 700 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 700 (767)
|....++++|+.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|..+|++++|+.+|+++++. -
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 34445688899999999999999999998863 33 3333 35778899999999999999999988652 2
Q ss_pred CCCCHHHHHH
Q 047305 701 FILRPRVCNY 710 (767)
Q Consensus 701 ~~~~~~~~~~ 710 (767)
+.|+++....
T Consensus 416 lG~~Hp~~~~ 425 (433)
T 3qww_A 416 HGKDHPYISE 425 (433)
T ss_dssp TCTTCHHHHH
T ss_pred cCCCChHHHH
Confidence 2355544333
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.73 E-value=2.3e-05 Score=61.49 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=21.3
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.+.|++++|+..|+++++..|.++. ++..++.+|...|++++|+..+.+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444443 333444444444444444333333
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.73 E-value=9.1e-05 Score=57.97 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP-SCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
...+..+...|++++|+..++++++.+ |.++. ++..++.+|...|++++|+..|+++++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445666777777777777777777765 56666 77777777777777777777777777643
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.65 E-value=0.0011 Score=61.37 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=88.0
Q ss_pred hccCCCccchHHHHHHH---Hh--cCC------HHHHHHHHHHhhhcCCCC--CccchHHHHHHHhh-----cCCHHHHH
Q 047305 594 RDISGRDDESMKSIEEF---LQ--KGE------VENAIQGLLEMDFKLNDF--QLAPYTIWLIGLCQ-----DGQVKEAL 655 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~---~~--~g~------~~~A~~~~~~~~~~~~p~--~~~~~~~l~~~~~~-----~g~~~~A~ 655 (767)
+..|++...+++.+.+. .. .|. ...|...+++. ...+|. +..+|..++..|.. .|+.++|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerA-leLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERA-CDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHH-HHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 45566666665543332 22 232 34555555552 124577 56689999999998 49999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLKNGFI--LRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+.|+++++.+...+..++..+++.++.. |+.++|.+++++++..... |+... ..... -++|..++.+
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l----an~~~------q~eA~~LL~~ 294 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL----LVILS------QKRARWLKAH 294 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH----HHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH----HHHHH------HHHHHHHHHH
Confidence 9999999998323588999999999884 9999999999999987644 33322 22222 4566666666
Q ss_pred HH
Q 047305 733 MK 734 (767)
Q Consensus 733 ~~ 734 (767)
+.
T Consensus 295 ~~ 296 (301)
T 3u64_A 295 VQ 296 (301)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.56 E-value=0.00015 Score=73.74 Aligned_cols=94 Identities=3% Similarity=-0.162 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHhhhC---CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 543 RVDREEDAFRIFGQMPQN---GCTP----SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
..|++++|..++++.++. -+.| ...+++.++.+|...|++++|+.++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 346788888888776541 1112 24577788888989999999999887775
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
....+.-....|+....+++|+.+|..+|++++|+.+++++++
T Consensus 368 -----~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 368 -----KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -----HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4444443344566667899999999999999999999999863
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.00027 Score=72.13 Aligned_cols=76 Identities=16% Similarity=0.022 Sum_probs=53.7
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN---GFIL 703 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 703 (767)
..++++++.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|...|++++|+.+++++++. -+.|
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34588888888888888888888888753 23 3333 34777888888999999999988888652 2236
Q ss_pred CHHHHHHH
Q 047305 704 RPRVCNYL 711 (767)
Q Consensus 704 ~~~~~~~l 711 (767)
+++....+
T Consensus 408 ~Hp~~~~~ 415 (429)
T 3qwp_A 408 EHSLIEDL 415 (429)
T ss_dssp TSHHHHHH
T ss_pred CChHHHHH
Confidence 65544443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00052 Score=69.97 Aligned_cols=108 Identities=7% Similarity=-0.109 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC---CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQN---GCTP----SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
+..+...|++++|+.+++++++. -+.| ...++..++.+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L----------------- 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM----------------- 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence 33455667888888888777642 1112 24566777777878888888888876665
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCChHhH
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTPPSC 673 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 673 (767)
..+.+.-....|+....+++|+.+|...|++++|+.+++++++ .| +..|.+.
T Consensus 357 ----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~ 413 (429)
T 3qwp_A 357 ----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG-REHSLIE 413 (429)
T ss_dssp ----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHH
T ss_pred ----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3444433334566667799999999999999999999999863 45 4555443
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.51 E-value=0.00039 Score=53.08 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=44.5
Q ss_pred cCCCccchHHHHHHHHhcCC---HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 596 ISGRDDESMKSIEEFLQKGE---VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.|+++..+..++.++...++ .++|...+.+ +. .+|+++.++..+|..+...|++++|+..|+++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666666666666654333 4666555555 32 357777777777777777777777777777777765
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.43 E-value=0.00074 Score=53.13 Aligned_cols=72 Identities=11% Similarity=-0.129 Sum_probs=58.2
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcC------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECK------AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
-+..+|..+...|+++.|+.+|+++++.. -.+.+.++..|+.+|.+.|++++|..+++++++. .|+......
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHh
Confidence 37789999999999999999999987641 1345678899999999999999999999999874 477655433
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.00078 Score=55.87 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 631 NDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.|.+..+...+++++.+.+ +.++++.+++...+.+.| ....+++.++-+|++.|++++|+++++.+++.. |++.
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie--P~n~ 105 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNN 105 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 3566777899999999988 677999999999887522 357888899999999999999999999998844 7665
Q ss_pred HHHHH
Q 047305 707 VCNYL 711 (767)
Q Consensus 707 ~~~~l 711 (767)
....+
T Consensus 106 QA~~L 110 (152)
T 1pc2_A 106 QAKEL 110 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.41 E-value=0.00053 Score=56.87 Aligned_cols=89 Identities=11% Similarity=-0.056 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
....+.+.|.+.++..|.+..+.+.+++++.+.+ +.++++..+.++-....| .....+..|+-+|++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456667777777778888888899999999988 566898888885444335 456678999999999999999999
Q ss_pred HHHHHHHcCCCCCh
Q 047305 657 IFSVLVECKAIVTP 670 (767)
Q Consensus 657 ~~~~~~~~~~~~~~ 670 (767)
+++++++.. |.+.
T Consensus 93 y~~~lL~ie-P~n~ 105 (152)
T 1pc2_A 93 YVRGLLQTE-PQNN 105 (152)
T ss_dssp HHHHHHHHC-TTCH
T ss_pred HHHHHHhcC-CCCH
Confidence 999999886 5444
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.012 Score=57.12 Aligned_cols=153 Identities=10% Similarity=-0.099 Sum_probs=102.6
Q ss_pred HHHhccCCCccchHHH--HHHHHhcCC---HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---C-CH-H--HHH-HH
Q 047305 591 QYLRDISGRDDESMKS--IEEFLQKGE---VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---G-QV-K--EAL-NI 657 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l--~~~~~~~g~---~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g-~~-~--~A~-~~ 657 (767)
+.....|.++.++... +..+...+. ..+|+..+.+.. ..+|+.+.+|..++.+|... + .. . +++ ..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3456678888888654 444554444 467888888732 24699988888888877532 1 11 1 111 12
Q ss_pred HHHH--HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 658 FSVL--VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 658 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
++.. ...+ +.++.++..++..+...|++++|+..+++++..+ |+...+ .++..++.-.|+ +++|.+.+++...
T Consensus 264 ~~a~~a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~-~llG~~~~~~G~-~~eA~e~~~~Alr 338 (372)
T 3ly7_A 264 IDNIVTLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNY-VLLGKVYEMKGM-NREAADAYLTAFN 338 (372)
T ss_dssp HHHHHTCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHH-HHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHhcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHH-HHHHHHHHHCCC-HHHHHHHHHHHHh
Confidence 2221 1333 7788889999888888999999999999999875 664433 444555547888 9999999999876
Q ss_pred cCCCCCCcchhhhhhh
Q 047305 736 VGYDLDACLYPKTKSL 751 (767)
Q Consensus 736 ~~~~~~~~~~~~~~~~ 751 (767)
. .|+..+|--+.++
T Consensus 339 L--~P~~~t~~~~~~l 352 (372)
T 3ly7_A 339 L--RPGANTLYWIENG 352 (372)
T ss_dssp H--SCSHHHHHHHHHS
T ss_pred c--CCCcChHHHHhCc
Confidence 5 5666666555443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.88 E-value=0.014 Score=47.41 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=78.0
Q ss_pred CCCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc
Q 047305 563 TPSPAVYKSLMTWSCRRRKF------SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA 636 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~ 636 (767)
+.|..+|-..+....+.|+. +..+++|++++...|+.....+ +.+..+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w----------------rrYI~L---------- 63 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN----------------ESFARI---------- 63 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC----------------HHHHHH----------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH----------------HHHHHH----------
Confidence 44677777777777777887 7888888888888777632211 111111
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
|...+ .+...++.++|.++|+.+++.+ +.=..+|...++--.++|+++.|++++.+++..+..
T Consensus 64 -WIrYA-~~~ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 64 -QVRFA-ELKAIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -HHHHH-HHHHHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -HHHHH-HHHHhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 11111 1123379999999999997764 333778888888888999999999999999987633
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.73 E-value=0.0078 Score=55.82 Aligned_cols=82 Identities=7% Similarity=-0.050 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhccCC--CccchHHHHHHHHhc-----CCHHHHHHHHHH-hhhcCCCCC-ccchHHHHHHHhhc-CCH
Q 047305 582 FSLAFSLWLQYLRDISG--RDDESMKSIEEFLQK-----GEVENAIQGLLE-MDFKLNDFQ-LAPYTIWLIGLCQD-GQV 651 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~-~~~~~~p~~-~~~~~~l~~~~~~~-g~~ 651 (767)
...|...++++++.+|. +..++..++..|... |+.++|.+.|++ +. ..|+. ..++...+..++.. |++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666666666 444666666666663 667777666666 33 23643 66677777777764 777
Q ss_pred HHHHHHHHHHHHcC
Q 047305 652 KEALNIFSVLVECK 665 (767)
Q Consensus 652 ~~A~~~~~~~~~~~ 665 (767)
++|.+++++++...
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777777654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.69 E-value=0.0084 Score=47.69 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=51.7
Q ss_pred CCccchHHHHHHHhhcCCHHH---HHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 633 FQLAPYTIWLIGLCQDGQVKE---ALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
.+..+-..++|++.+..+..+ ++.+++...+.+.| ....+...|+-++++.|++++|+++++.+++.. |+....
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e--P~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHH
Confidence 444456677777777665544 77777777665411 245667777777888888888888888777743 766555
Q ss_pred HHHHHH
Q 047305 709 NYLLRS 714 (767)
Q Consensus 709 ~~l~~~ 714 (767)
..|...
T Consensus 111 ~~Lk~~ 116 (126)
T 1nzn_A 111 KELERL 116 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.67 E-value=0.01 Score=46.43 Aligned_cols=75 Identities=9% Similarity=-0.160 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNG------CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
....+...+...++++.|...++.+.+.. -.+...++..+..++.+.|+++.|..+++++++..|.++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555566666666666666554420 123355666667777777777777777777777777776665444
Q ss_pred H
Q 047305 607 I 607 (767)
Q Consensus 607 ~ 607 (767)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.062 Score=60.68 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKEL 522 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (767)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455566555554322 24556666666666666666666666655
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.12 Score=58.25 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 469 EQYCTAGLIHKAYK-ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 469 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34456788888876 44221 1122236677778889999998876532 11 113345678999
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
++|.++.+.+ .+...|..++..+.+.|+++.|+..|.++
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 9999987543 46789999999999999999999988765
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.27 E-value=0.038 Score=43.99 Aligned_cols=100 Identities=10% Similarity=-0.080 Sum_probs=75.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH---HHHHHHHhhhcCCC-CCccchHHHHHHHhh
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN---AIQGLLEMDFKLND-FQLAPYTIWLIGLCQ 647 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 647 (767)
+++.-........+.+.|.+.....+....+.+.+++++.+..+... ++.++.++-....| .....+..|+-++++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 34444445566778888888888778888888999999999887776 88888886544334 344568888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
.|+|++|+.+++.+++.. |.+.-+
T Consensus 87 lg~Y~~A~~~~~~lL~~e-P~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE-PQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 999999999999999876 545433
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.15 E-value=0.27 Score=39.01 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=44.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
.......+..+|+-++-.+++..++... +++|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4444556667777777777777765533 777788888888888888888888888888777643
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.74 Score=39.23 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 047305 110 KVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIK 189 (767)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 189 (767)
+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345555555544433 2344555555555555555555555544321 2223333344455544444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 190 MLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
+-+.....| -++....++...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333322 133334444445555555555533
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.25 Score=42.09 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=84.0
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
..++|+++.|.++.+.+ ++...|..++......|+++-|.+.+.+... +..+.-.|.-.|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44677888887776554 4566677778888888888888777777541 677777788888887777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
.+-+.+...| -++.-..++.-.|++++++++|.+. |..|. .++ +.+..|. .+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e----A~~---~A~t~g~-~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL----AYA---VAKANGD-EAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH----HHH---HHHHTTC-HHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH----HHH---HHHHcCc-HHHHHHHHHHh
Confidence 7766666554 2244455677889999999988654 32221 112 2224565 67777776664
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.60 E-value=0.12 Score=41.80 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
..++.+-..++|++.+..+ ..+++.+++...+.+......+...++-++++.|++++|+++.+.+++. .|+....
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 4455668899999998864 4678999999987653346778889999999999999999999999985 4876544
Q ss_pred HHH
Q 047305 709 NYL 711 (767)
Q Consensus 709 ~~l 711 (767)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.45 E-value=8.3e-06 Score=80.07 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=84.9
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
....+|..+....+..+++.+|.+.|-+. -++..|..++.+..+.|.+++-+..++-.++. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 35678899999988888888776555322 35567888999999999999999988755543 34445556888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 141 NIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
-+|++.++..+-.+++ . .|+..-...+..-|...|.++.|.-+|..+
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9999998865443322 1 366656677777888888888887776643
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.27 E-value=0.082 Score=42.15 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=62.2
Q ss_pred CccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 634 QLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.+-..++|++.+..+ ..+++.+++.+.+.+......++..++-++++.|++++|+++.+.+++. .|+......
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 44558899999998864 4679999999987763345788999999999999999999999999874 487765555
Q ss_pred HHHH
Q 047305 711 LLRS 714 (767)
Q Consensus 711 l~~~ 714 (767)
|...
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.97 E-value=0.13 Score=43.06 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
+..+++++...+++..|...|+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444455555555555555554
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.89 E-value=0.15 Score=42.67 Aligned_cols=45 Identities=16% Similarity=-0.076 Sum_probs=25.0
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 669 TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
+..+...++.||.+.|++++|+.+++.+..+.. .+-.+.+++.|+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R---t~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR---TPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC---CHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc---CHHHHHHHHHHh
Confidence 344556667777777777777777665543321 123444555444
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.87 E-value=6 Score=43.79 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQ 196 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 196 (767)
|..++.++.+.++.+.+.++|+.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455556666777777777777653
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.70 E-value=0.32 Score=39.69 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHh-hHHHHH------HHHHhcCCHHHHHHHHHHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLI------HKAYKILMQLAESGNLPDII-TYNSLI------NGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~~~ 524 (767)
+.+.++|...+...-+.|+. +...++|+++... .+|+.. .|...+ ..+...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777777777777 7777788877665 333321 111111 112344778888888888866
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 525 KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 525 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
.+-+. ...|...+..-.+.|+...|++++.+.+..+.+| ...+...+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 53333 5556666666677888888888888888765333 334443333
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.67 E-value=0.00016 Score=71.24 Aligned_cols=224 Identities=10% Similarity=0.015 Sum_probs=118.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 047305 39 MKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKAL 118 (767)
Q Consensus 39 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 118 (767)
.+.+.++.-.+++.-+++. .+....-+.++-.+++.++..+..+.+. .|+..-...+..-|...|.++.|.
T Consensus 94 ~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 94 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp TTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHH
Confidence 3344555555555544333 2344444455555666665543322221 233334445666666666666666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 119 ESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
-+|..+.. |..|..++.+.|+++.|.+.-.+ ..+..+|..+-.+|...+.+..|...--.+.-.
T Consensus 165 ilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh- 228 (624)
T 3lvg_A 165 LLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH- 228 (624)
T ss_dssp TTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-
T ss_pred HHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-
Confidence 66654432 22233334455555544432211 245667777777787777777765544433321
Q ss_pred CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------C
Q 047305 199 ILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD-GFV------P 271 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~ 271 (767)
..-...++.-|-..|.+++-+.+++.-... -......|+-|.-.|++- +.++..+.++..-.+ +++ -
T Consensus 229 ----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 ----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp ----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 222334555667778888888888777632 234667788777777764 334433333322111 111 1
Q ss_pred CcccHHHHHHHHHhcCCHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAY 293 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~ 293 (767)
....|..++-.|..-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 2455667777777777776654
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.13 Score=55.56 Aligned_cols=59 Identities=17% Similarity=0.011 Sum_probs=50.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+..=+..+...|+++-|+++.++++... |.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3333556677899999999999999886 8889999999999999999999999998873
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.10 E-value=1.5 Score=43.84 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=76.3
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|+.+.|.+.+.+++.......-.-.. ...-.......+.+... .+...++..+...|++++|+..
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~------~~~w~~~~r~~l~~~~~-------~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR------DFQFVEPFATALVEDKV-------LAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT------TSTTHHHHHHHHHHHHH-------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC------chhHHHHHHHHHHHHHH-------HHHHHHHHHHHHCCCHHHHHHH
Confidence 3577888888888888654333211100 00001111122333211 1255667778888999999998
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRVC 708 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 708 (767)
++.+.... |-+...+..+..+|.+.|+..+|.+.|++..+ .|+.|.+.+-
T Consensus 194 l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 194 LEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 88888876 77888888899999999999999998887654 3778877653
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.83 E-value=0.43 Score=38.10 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=52.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 526 GLRPDSVTYGTLINGLQRVDRE---EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 526 ~~~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
+-.|+..+--.++.++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|..+.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3356666666677777776654 3577788777765421223444455556778888888888888888888888765
Q ss_pred h
Q 047305 603 S 603 (767)
Q Consensus 603 ~ 603 (767)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.83 E-value=0.87 Score=36.87 Aligned_cols=76 Identities=8% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTYGTLINGLQRVDRE---EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|+..+-..++.++.++.+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|..+.+.+++..|.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 46666666777777777654 35777888777643222333344455557788888888888888888888887654
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.20 E-value=3.2 Score=41.06 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHhhH--
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-GLRPD---SVTYGTLINGLQRV-DREEDAFRIFGQMPQNGCTPSPAVY-- 569 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~-- 569 (767)
.....|...|.+.|+.++..+++...... +.-|- ......+++.+... +..+.-.++..+.++-. ..+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566778888888888888877766432 00111 12344455555432 23333344444443310 0111111
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 570 ----KSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 570 ----~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
..++..|...|++.+|.+++.++++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1445556666666666666655554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.58 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
=|..||.+..+.+.+++|.+.|+..+.. .=++..+..|+..+.
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~ 657 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYL 657 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHH
Confidence 3556666666666666666666666542 244455555665555
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.02 E-value=13 Score=37.74 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=117.6
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHH----HHHHh
Q 047305 509 VGNINGALKLFKELQLK-----GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLM----TWSCR 578 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~ 578 (767)
.|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+. |..+ .....++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37889999887766642 23334556788889999999999988888776543 3222 2222333 33333
Q ss_pred cCChhHHHHHHHHHHh---ccCCCc--------cchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----ccchHHHH
Q 047305 579 RRKFSLAFSLWLQYLR---DISGRD--------DESMKSIEEFLQKGEVENAIQGLLEMDFKLN-DFQ----LAPYTIWL 642 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~---~~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p~~----~~~~~~l~ 642 (767)
....+.... ...+. .....- .....++..|...|++.+|...+.++..... ..+ ...+..-+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333332211 12222 111111 1124578899999999999999999543211 111 23567778
Q ss_pred HHHhhcCCHHHHHHHHHHHHH--cCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVE--CKAIVTP----PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..|...+++.+|..++.++.. ...++++ ..+...+..+...+++.+|...|.++..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888999999999999999742 1112222 3456677888889999999999988864
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.95 E-value=11 Score=35.74 Aligned_cols=80 Identities=8% Similarity=-0.035 Sum_probs=44.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---CCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---GEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
-++.....++..|.+.|++.+|...|- -...+++..+..+..-.... |...++ ..+..
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i---~~~~~s~~~~a~~l~~w~~~~~~~~~~e~----------------dlf~~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM---LGTHDSMIKYVDLLWDWLCQVDDIEDSTV----------------AEFFS 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHTTCCCHHHH----------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH---hCCCccHHHHHHHHHHHHHhcCCCCcchH----------------HHHHH
Confidence 367778888888888888888887762 11111233333332222222 333332 22222
Q ss_pred H-HHHHhhcCCHHHHHHHHHHHH
Q 047305 641 W-LIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 641 l-~~~~~~~g~~~~A~~~~~~~~ 662 (767)
. +--|...|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 2 224556788888888888764
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.22 E-value=15 Score=37.30 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
|++++|++.+..+++.. ...............++..+...|+++...+.+..+...... .......++..+
T Consensus 30 ~~~~~a~e~ll~lEK~~--------r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKT--------RQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHH--------SSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh--------hhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 56777777665554210 122344556777888999999999999998888766543222 122223333322
Q ss_pred ----HhcCCHHHH--HHHHHHHHH--CC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC---HhhH
Q 047305 507 ----CKVGNINGA--LKLFKELQL--KG-LRP---DSVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTPS---PAVY 569 (767)
Q Consensus 507 ----~~~g~~~~A--~~~~~~~~~--~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~ 569 (767)
......+.. ..+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222322221 111111110 01 111 1123356788899999999999999998642 22221 4566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh---ccCCCcc----chHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLR---DISGRDD----ESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
...++.|...+++..|..++.++.. ..+..+. .+...+..+...+++.+|.+.|.+.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6778889999999999999998752 2233332 2235677888899999998888874
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.94 E-value=4.9 Score=46.81 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh--------hhhhcc-
Q 047305 383 ILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL--------FLRLSQ- 453 (767)
Q Consensus 383 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~- 453 (767)
.++..+.+.+..+.+.++..-. +.++..--.+..++...|++++|.++|.+...+..... ...+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4566677777777776644322 23555555667788999999999999988753221110 000000
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQLKGLRP 529 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 529 (767)
......-...|..++..+.+.|.++.+.++-+.+.+.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0111122345677788888888888888888777654322222 2577788888888899988888877776533
Q ss_pred ChhhHHHHHHHHHhcCCHH
Q 047305 530 DSVTYGTLINGLQRVDREE 548 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~ 548 (767)
-...+..++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2445666666666655543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.63 E-value=4.8 Score=46.88 Aligned_cols=164 Identities=10% Similarity=0.062 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
...++..+...+.++.+.++..-. +.++...-.++.+|..+|++++|.+.|.++............
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~--------- 880 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA--------- 880 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh---------
Confidence 344556667777777666655433 223333345566677888888888888776533222211110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCChhHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP----SCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 689 (767)
..... ..+.... .....-+..|..++..+.+.|.++.++++-+.+++...+.++. .|..+...+...|++++|
T Consensus 881 -~~~~~-~~~~~~~-~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 881 -VLREF-QEIAEKY-HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -SHHHH-HHHHHTT-TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -hhccc-ccccccc-cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00000 0111100 0111223457788888888899999999998887654233321 466788888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
...+-.+..... -......++..++
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lc 982 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLT 982 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHH
Confidence 888877654332 2334445555555
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.60 E-value=1.8 Score=39.60 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 607 IEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
+....+.|..++|++.+.. +. ..|.+...-..+...+|-.|+|++|.+-++...+.+ |+...-..+..-+.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~--- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVK--- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHH---
Confidence 3456778999999888887 44 359999888899999999999999999999998875 433222111111111
Q ss_pred hhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHc
Q 047305 686 LDLAMDVFLYTLKNGFIL-----RPRVCNYLLRSLLF-SKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~-~~~~~~~~a~~~~~~~~~~ 736 (767)
|+..=++....+..| .+.-...++.++.. ..|+ .++|..+-.++.+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~-~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-YEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhc
Confidence 222222232322222 22333445555543 3566 88888888877654
No 253
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.43 E-value=7.1 Score=31.23 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 342 DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGC 409 (767)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 409 (767)
+...+...+..+...|+-++-.+++..++.. .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455556666666666666666665443 235566666666677777777777777666666654
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.75 E-value=1.7 Score=43.28 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH-----HcCCCCChHhHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-----ECKAIVTPPSCV 674 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 674 (767)
..++..+...|++++|+..+..+. ..+|.+...+..++.+|.+.|+..+|++.|++.. +.|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~-~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALT-FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345677778899999888887753 2468888889999999999999999999999874 468888876544
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.59 E-value=26 Score=34.53 Aligned_cols=299 Identities=10% Similarity=-0.019 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA-GLIHKAYKILMQLAESGN 492 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 492 (767)
.....+...|.+.|+.++..+++..... .+.. -...........+++.+... +..+.-.++..+..+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 90 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-----FLSS----ISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK 90 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-----GGGG----SCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHH----hchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456678888889999888888877631 0000 11123344556667766653 333444444444433210
Q ss_pred CCCHhhH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 047305 493 LPDIITY------NSLINGFCKVGNINGALKLFKELQLKGLRPDSV-----TYGTLINGLQRVDREEDAFRIFGQMPQN- 560 (767)
Q Consensus 493 ~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 560 (767)
. +..+| ..++..|...|++.+|.+++.++.+.--+.|.. .+..-+..|...+++.++..++......
T Consensus 91 ~-~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 91 Q-EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 0 11223 257888999999999999999988642222222 3445556778899999999999887542
Q ss_pred -CCCCCHhhHH----HHHHHHH-hcCChhHHHHHHHHHHhccCCCccc-----hHHHHHHHHhcCCHHHHHHHHHH-hhh
Q 047305 561 -GCTPSPAVYK----SLMTWSC-RRRKFSLAFSLWLQYLRDISGRDDE-----SMKSIEEFLQKGEVENAIQGLLE-MDF 628 (767)
Q Consensus 561 -~~~~~~~~~~----~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~-~~~ 628 (767)
.+.+++.+.. +-+..+. ..++|.+|...|-++.+....-... ...++-+....++..+--..+.. ...
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~ 249 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAI 249 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccc
Confidence 2323333222 2233356 7899999999998887654432211 11122222223332221111111 111
Q ss_pred c-CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 629 K-LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 629 ~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
. ..|. ...+..+..+ ...+++.+...+++..... +..|+....++-..+-+. .+.++ .++ +.|-..+
T Consensus 250 ~~~~pe-i~~l~~L~~a-~~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~I--r~~~L---~~i----~~pYsrI 317 (394)
T 3txn_A 250 TYSGRD-IDAMKSVAEA-SHKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDTM--LEQNL---CRI----IEPYSRV 317 (394)
T ss_dssp TTCSHH-HHHHHHHHHH-HHTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHHH--HHHHH---HHH----HTTCSEE
T ss_pred ccCCcc-HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHH--HHHHH---HHH----hHhhcee
Confidence 1 1122 1224444444 4456777776666665432 355654333222222111 11111 122 2344333
Q ss_pred -HHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 708 -CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 708 -~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
+..+...+ .-. .+++...+-+|...|-
T Consensus 318 sl~~iA~~l--~ls--~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 318 QVAHVAESI--QLP--MPQVEKKLSQMILDKK 345 (394)
T ss_dssp EHHHHHHHH--TCC--HHHHHHHHHHHHHTTS
T ss_pred eHHHHHHHH--CcC--HHHHHHHHHHHHHCCC
Confidence 33344333 333 5889999999886653
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.18 E-value=46 Score=35.25 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 474 AGLIHKAYKILMQLAESGNLPDIITY----NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
..+.+.|...+....+.... +.... ..++..+...+...++...+...... .++.......+....+.|+++.
T Consensus 227 r~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred hcCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 34889999999888654322 33222 22333333445345666666665544 2344444444455567799999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF- 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 628 (767)
|...|..|.... .....-.--+..++.+.|+.++|..+|.++.+. ..++.+. +..+.|.... ...
T Consensus 304 a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~~fYg~l-Aa~~Lg~~~~-------~~~~ 369 (618)
T 1qsa_A 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFYPMV-AAQRIGEEYE-------LKID 369 (618)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHHHHH-HHHHTTCCCC-------CCCC
T ss_pred HHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CChHHHH-HHHHcCCCCC-------CCCC
Confidence 999999887532 123333445566778899999999999998752 2343322 1112221000 000
Q ss_pred cCCCCCc-----cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 629 KLNDFQL-----APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 629 ~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
...+... ..-...+..+...|....|...+..+.+. .++.-...++......|..+.++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0001000 01234456678889999999888887754 2334445667777788888887765543
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.11 E-value=57 Score=36.28 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=116.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 047305 352 GFCDLGLLDQARSLQVEIWKRD--SLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGC-------FPSVGMFNALIDG 422 (767)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 422 (767)
+....|+.+++..++...+..+ ..+....-..+.-+....|...++..++........ .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445677777777666655421 112223333344445555555566666666554311 0011111222222
Q ss_pred H--HHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 047305 423 L--CKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN 500 (767)
Q Consensus 423 ~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (767)
+ ...++ +++...+..+.....+ .........++..+...|+.+....++..+.+.. ..+..-..
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~------------~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA------------TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGL 528 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH------------HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHH
Confidence 2 22333 3444444444311110 0111233344555556677666666666655432 11222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 501 SLINGFCKVGNINGALKLFKELQLKGLRPDSV--TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
.+.-++...|+.+.+..+.+.+.... .|... ....+.-+|+..|+.....++++.+.... ..+..-...+.-++..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 33344446677777777766666531 11111 11233345666777666666777776531 2222222222223444
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHh--cCCH-HHHHHHHHHhh
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ--KGEV-ENAIQGLLEMD 627 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~-~~A~~~~~~~~ 627 (767)
.|+.+.+..++..+.+. .++.+....+.++.. .|+. .+++..+..+.
T Consensus 607 ~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 56655555555444332 234444433333322 2222 45666666654
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.11 E-value=9.7 Score=34.84 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.|++++|++....-++..|.|......++..++-.|++++|.+.+.-
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.02 E-value=8.8 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 127 FDCQPDVYIYNAVLNIAFRKQLFLLALAVYYE 158 (767)
Q Consensus 127 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 158 (767)
..+-|++....+.+++|.+.+++..|.++++-
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 70 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEV 70 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33334444444444444444444444443333
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.90 E-value=33 Score=32.52 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKL----LSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-+.+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34555666677777766654322 122344554444333 33344456666666666666555
Q ss_pred HhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 354 CDLGLLD-QARSLQVEIW----KRD--SLPNTHTFTILICGMCRNGMVDDAQKLFN 402 (767)
Q Consensus 354 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (767)
......+ .-.++++.++ +.+ ..-++.....+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4422111 0111222221 121 12355666666667777777777666553
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.72 E-value=6 Score=29.63 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMK 230 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 230 (767)
..+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.44 E-value=35 Score=32.57 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL----SDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
++..-|.+.+++++|.+++..-. ..+.+.|+...+.++. +-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34555667777777777654322 1233344444433333 3334456666666655555555
Q ss_pred HhcCCHH-HHHHHHHHHH----hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 354 CDLGLLD-QARSLQVEIW----KR--DSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 354 ~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
.....-+ .-..+.+.++ +. ...-++.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4433211 0011111111 11 12335556666666677777777766665
No 263
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=81.72 E-value=22 Score=29.67 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----------------CC
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----------------VT 669 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~ 669 (767)
+.-.+.-.|++..++-++.++. ..++..--.-+|.+.+++.+|+..++++++-.+. .|
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhcchHhHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3444445555555554444321 1122222233455556666666666666532222 11
Q ss_pred -hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 670 -PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 670 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
...++.++..+...|+.++|+.++...-.
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 22355667777777777888777776544
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.12 E-value=60 Score=34.39 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD--KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 504 (767)
.+.+.|...+...... ...... ......++..+...+...++...+....... .+.....-.+.
T Consensus 228 ~d~~~A~~~~~~~~~~------------~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r 293 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA------------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (618)
T ss_dssp HCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhc------------cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHH
Confidence 4788999988777410 111111 1122233333444553556667776655442 33333333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 505 GFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
...+.|+++.|...|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44577999999999998865321 1333455667788899999999999999874
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.90 E-value=8.3 Score=33.47 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.+...++.++|.-|...++.-. ...|...+..+...|++.+|..+|+..++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3447789999999977665544 4567778888889999999999999999888777443
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.99 E-value=13 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=13.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 493 LPDIITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
.||...|..+.. .+.|..+++..-+..+..
T Consensus 68 ~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 68 YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 445555544332 244555554444444433
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.61 E-value=16 Score=36.85 Aligned_cols=99 Identities=9% Similarity=-0.153 Sum_probs=59.2
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCChHhHH---
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLEMDFK--LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC-KAIVTPPSCV--- 674 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--- 674 (767)
.+...++..|.+.|++++|.+.+.++... ........+...+.++...+++..|...+.++... ...+++....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35567778888888888887777774322 11223345667777777778888888887777432 1122332222
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 675 -KLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 675 -~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.-|.++...+++.+|...|-.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2233344667777777777666543
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.85 E-value=12 Score=27.75 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK 525 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (767)
+...|++++|..+.+.. ..||...|..+.. .+.|..+++..-+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444444444433222 2455555544432 3555555555555455444
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.46 E-value=17 Score=28.90 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047305 156 YYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQ 196 (767)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 196 (767)
++.+....+-|++.+....+++|.+.+|+..|.++|+-++.
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344444444444444444444445444444444443
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.39 E-value=27 Score=35.23 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=69.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCCcc----c
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKL-NDFQLA----P 637 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~p~~~~----~ 637 (767)
..+...+++.|.+.|++++|.+.|.++........ ..+...+..+...+++..+...+.+..... ...++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34677889999999999999999999986544433 455677888999999999988888843221 122222 1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
...-|..+...++|.+|...|-.+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 22334455667999999998888754
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.68 E-value=36 Score=27.17 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLN 246 (767)
Q Consensus 186 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (767)
+..+-++.+...++.|++....+.+++|.+.+++..|..+|+-.+.. ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566666666677777777777777777777777777777777544 2333444554443
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.35 E-value=14 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+++.++|..|...++... ...|...+..+...|++.+|.++|+..++.+-.|-..+-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 457888999987776554 44577788888899999999999999999887876654333
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.02 E-value=33 Score=38.88 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
.+...|.++-|.+ +..-.|.++...+.+|.+|...|++++|...|.+..
T Consensus 819 ~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 819 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444443332 234444444444555555555555555555555533
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.46 E-value=14 Score=30.47 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 652 KEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+++.++|.-+...++.-. ...|...+..+...|++.+|.++|+..++.+-.|-...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 458999999987776554 45677788889999999999999999999887775544
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.50 E-value=39 Score=25.23 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=21.6
Q ss_pred HHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047305 213 LCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD 267 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (767)
+...|++++|..+.+.+. .||...|.+|... +.|-.+++...+..+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 344455555554443322 3444444443322 444444444444444433
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.91 E-value=38 Score=25.27 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047305 213 LCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD 267 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (767)
+...|++++|..+.+.+. .||...|.+|... +.|-.+++...+..+..+
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 444555555554433322 3454444443322 445555555554444443
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.78 E-value=46 Score=29.42 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 652 KEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
+++.++|.-|...++.-. ...|...+..+...|++.+|..+|+..++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 688899999987776554 456777888899999999999999999998877743
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.97 E-value=1e+02 Score=26.76 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCC
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDA 742 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 742 (767)
|..+++.+ ..++..++..+|+-+..+|+.-....+..-.+.++...|+ +++|..+++.-.+.+-.|-.
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF-FLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCccHH
Confidence 33344333 2455779999999999999887776666666666768888 99999999998887766653
No 279
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=48.49 E-value=1.1e+02 Score=25.14 Aligned_cols=84 Identities=10% Similarity=-0.016 Sum_probs=48.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 687 (767)
...+-..++.+.+..+.......-|.. .-..|+..|.+..++.+-. +..+-.++.+...--..+-|+|...|+++
T Consensus 16 ~~afl~~dYs~VI~~L~~~~~~~Lp~~--~kY~LA~SYI~~e~Ls~eQ---KenIln~itlkSde~yL~YWIyiGRg~~~ 90 (161)
T 2ynq_A 16 TELFLQNKYSDVITTLEDYAPEDMPYV--IQYELASSYVMTESLTEEQ---RQTVSNNITLKTDEQYMLYWIYIGRSQSE 90 (161)
T ss_dssp HHHHTTTCHHHHHHHHTTSCGGGSCHH--HHHHHHHHHHHTSSSCHHH---HHHHHHTCCTTSCHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhhHHHHHHHHhcCChhhCChh--HHHHHHHHHHHccCCCHHH---HHHHHhhCCccCCHHHHHHHHHHcCCchH
Confidence 344456677777777766554433432 2556677777765554222 22222223444444455677888888888
Q ss_pred HHHHHHHHH
Q 047305 688 LAMDVFLYT 696 (767)
Q Consensus 688 ~A~~~~~~~ 696 (767)
+|+.+-+.+
T Consensus 91 eAlDiA~~L 99 (161)
T 2ynq_A 91 EALELARTI 99 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888776655
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.43 E-value=1.4e+02 Score=30.57 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCH--hhH-HHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSP--AVY-KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
..++.+++.|...+.++.|..+..+..-- ...++. ..| ..++..+.-.++|.+|.+.+..+++..|.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 46788889999999999999999988521 001121 222 245666778899999999999999988877644
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=45.13 E-value=68 Score=32.83 Aligned_cols=63 Identities=8% Similarity=-0.009 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
...++.|...|.++.... +.+...|+.++-.....|+.-+|.-.|-+.+-...+-+.+..++.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 344455555555554431 233444555554444455555555555554443333344444443
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.87 E-value=2.2e+02 Score=27.13 Aligned_cols=76 Identities=16% Similarity=0.060 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVY-KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIE 608 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 608 (767)
|+..-..+...|.+.+++.+|...|- . |-.+....+ ..+.+++.+.+ ..++--++.+ .+-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaR--------------aVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE-SHTAPLYCAR--------------AVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-CccHHHHHHH--------------HHH
Confidence 45555667778888888888887772 2 333333455 34444443333 3333222222 234
Q ss_pred HHHhcCCHHHHHHHHH
Q 047305 609 EFLQKGEVENAIQGLL 624 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~ 624 (767)
-|.-.++...|...+.
T Consensus 196 ~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 196 PYLLVANVRAANTAYR 211 (336)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 4566677777655433
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.66 E-value=1.4e+02 Score=24.93 Aligned_cols=112 Identities=16% Similarity=-0.027 Sum_probs=70.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
+-.+++.++-.-.-+- |..+..-..+...+.-.|.+..++-++.+. ...++...-.-+|.+.+++..|+.
T Consensus 14 kY~dYdt~~fLsa~L~----~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAACLL----PCKPEYRMLMSIVLYLNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHHHc----cCChHHHhhhhhhhhhcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666632222232 444454556666788899999998877543 222233334458889999999999
Q ss_pred HHHHHHHCCCCC----------------CHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 692 VFLYTLKNGFIL----------------RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 692 ~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
.++++++..+.- |...+..+++-++.+.|+ .+||...+..--
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~-r~EaI~y~~~Sf 141 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY-REEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC-HHHhhhHhhhhc
Confidence 999999654432 223444466667767887 899999887633
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.51 E-value=72 Score=26.53 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=42.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCC--ChHhHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIV--TPPSCVKLIH------GLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..+...|+|=+|-++++.+-.....+ +...|-.|++ ...+.|+.+.|..++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667799999999999996654344 4455656666 33478999999999999976
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.48 E-value=1e+02 Score=27.37 Aligned_cols=22 Identities=9% Similarity=-0.115 Sum_probs=11.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC
Q 047305 142 IAFRKQLFLLALAVYYEMVKLN 163 (767)
Q Consensus 142 ~~~~~g~~~~A~~~~~~~~~~~ 163 (767)
..++.|+.+.+..+++.+.+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3445566655555555544444
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.16 E-value=1.4e+02 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
.-..+..|...+..+-..|++.+|.++|+..++.+-.|-
T Consensus 92 G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 92 GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 355566788999999999999999999999988775554
No 287
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=42.03 E-value=55 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF---SKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~a~~~~~~~~~ 735 (767)
|+.++|+++|++.+. .|...+.. ..|..|+.|..|-+||.+
T Consensus 33 G~k~~A~~~YkkGi~-----------eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~ 76 (89)
T 3eab_A 33 GQKEQAVEWYKKGIE-----------ELEKGIAVIVTGQGEQCERARRLQAKMMT 76 (89)
T ss_dssp SSGGGSHHHHHHHHH-----------HHHHHHHSCCCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----------HHHhhcCCccCCCChhHHHHHHHHHHHHH
Confidence 777888888877654 22222221 245568999999999885
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.71 E-value=1.3e+02 Score=26.97 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047305 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMT 195 (767)
Q Consensus 166 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 195 (767)
.+.......+..+.+.|+.++|..+|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344445555566666666666666665443
No 289
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=41.43 E-value=1.4e+02 Score=30.48 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 682 (767)
+..+|....-.+.++.|...+.+.. ...|.+..+|+.||......|+.-+|+-.|-+.+-.. .|-+.+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~-~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 4567777777888888977777632 3469999999999999999999999999999988765 6778888888777665
Q ss_pred c
Q 047305 683 R 683 (767)
Q Consensus 683 ~ 683 (767)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.39 E-value=79 Score=32.31 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=46.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhH-HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGL-RPDS--VTY-GTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
...+|.+++.|...+.++.|..+.....--.. .++. ..| ..+...+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788999999999999999999998751100 0111 122 23445667789999999999998764
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.67 E-value=2.6e+02 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 241 YNALLNGFCKLRRVDEALALLRSFE 265 (767)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (767)
...++.-|...++.+++...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3455666666666666666666643
No 292
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.96 E-value=87 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHc
Q 047305 650 QVKEALNIFSVLVEC 664 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~ 664 (767)
..+.|+.++.++++.
T Consensus 11 ~l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777544
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.28 E-value=1.7e+02 Score=23.99 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 549 DAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
++..+|..|...|+-. -...|...+..+...|++.+|.++|+..++.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3778888887766544 4567777788888888888888888887764
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.25 E-value=2e+02 Score=25.76 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=43.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 503 INGFCKVGNINGALKLFKELQLK--GLRP----DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
++.+....++++|..++++.... +.++ ........+..-.....-.-+..+.+.+ .. .+........+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 44555666666666666655432 1121 1111112222222222222333444444 22 44555566666777
Q ss_pred HhcCChhHHHHHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~ 593 (767)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888876554
No 295
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.72 E-value=1.6e+02 Score=22.78 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh------cCCccH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF------SKDNKK 723 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~ 723 (767)
.+++|..++.++++.+ ..|+.+.|+++|++.++. |...+.. ..|..|
T Consensus 18 ~h~~AF~~Is~AL~~D----------------E~g~k~~Al~lYk~GI~e-----------Le~Gl~I~~~~~~~~g~~w 70 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD----------------ELGQKEEAKNYYKQGIGH-----------LLRGISISSKESEHTGPGW 70 (116)
T ss_dssp HHHHHHHHHHHHHHHH----------------HHTCHHHHHHHHHHHHHH-----------HHHHHSSCCCCTTCCCSHH
T ss_pred HHHHHHHHHHHHhhhh----------------hcCCHHHHHHHHHHHHHH-----------HHHhccccccCCCCCChhH
Confidence 4577777777776543 137888888888877642 2222221 335669
Q ss_pred HHHHHHHHHHHH
Q 047305 724 VHAYHLLCRMKS 735 (767)
Q Consensus 724 ~~a~~~~~~~~~ 735 (767)
++|..|.+||..
T Consensus 71 e~Ar~lq~KM~~ 82 (116)
T 2dl1_A 71 ESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999884
No 296
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.28 E-value=82 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=23.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHcCC
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEF--DCQPDVYIYNAVLNIAFRKQL 148 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~ 148 (767)
.++..+...+.+-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444555555555555544 444455555555555555553
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.14 E-value=2.8e+02 Score=27.83 Aligned_cols=56 Identities=7% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHH
Q 047305 31 KTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDEL 89 (767)
Q Consensus 31 ~~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~ 89 (767)
.+++..+....++++.|+++-. |.+-...-+.|..-+..+...|+|++|..+--..
T Consensus 332 ~~ivpyi~~~l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 332 ENIIPYITNVLQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccchhhhhhccCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445555555556665544332 2221123444555555555555555555544433
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.35 E-value=1.1e+02 Score=24.90 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 114 CEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444444433344444444444444444
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.95 E-value=2.2e+02 Score=23.63 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLP--NTHTFTILIC------GMCRNGMVDDAQKLFNKMEK 406 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 406 (767)
+.|++-+|.++++.+......+ ....|..||. ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477778877887777765545 4455555555 23456777777777777654
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.78 E-value=2.8e+02 Score=31.33 Aligned_cols=52 Identities=13% Similarity=-0.105 Sum_probs=36.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKME 440 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 440 (767)
++..+...|.++-|.++..- .+.++..--.+..+|...|++++|..+|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56677778887766553322 22355544567788999999999999999875
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.49 E-value=1.5e+02 Score=23.99 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=20.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 105 ISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333333444455555555544443444444444455555444
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.19 E-value=1.3e+02 Score=26.36 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=13.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcc
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~ 596 (767)
.+|.+.|.+++|.+++++.....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHhcchHHHHHHHHHHhcCC
Confidence 34566666666666666665543
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.52 E-value=1.6e+02 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMF 300 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~ 300 (767)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555555566666666665553
No 304
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.96 E-value=1.4e+02 Score=27.18 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q 047305 328 MKLLSDMRERGI 339 (767)
Q Consensus 328 ~~~~~~~~~~~~ 339 (767)
.++++.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 305
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.77 E-value=3.5e+02 Score=24.59 Aligned_cols=169 Identities=6% Similarity=-0.105 Sum_probs=0.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ--KGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
+......++....+.+++++..+..+++.+.++.-..--.++..+..+ .|....+.+.+..+..+.......-...++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHhhc--CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-----------------hHHHHHHHHHHH---CC
Q 047305 643 IGLCQD--GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL-----------------DLAMDVFLYTLK---NG 700 (767)
Q Consensus 643 ~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~---~~ 700 (767)
.-|... .....-=.-.-.+++..+-|+...-...+..+-..|++ +.|...|+++.. ..
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHH---HHHHHhhcCCccHHHHHHHHHHH
Q 047305 701 FILRPRVCNY---LLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 701 ~~~~~~~~~~---l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
+.|.+++... ....++...-+..++|..+.++.
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~A 225 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
No 306
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.34 E-value=66 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=10.2
Q ss_pred HhcCChhHHHHHHHHHHH
Q 047305 681 CKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~ 698 (767)
-+.|++++|+.+|.++++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345566666666655543
No 307
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.89 E-value=1.6e+02 Score=26.83 Aligned_cols=24 Identities=4% Similarity=0.069 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 047305 284 FRAKRYDEAYAWYRKMFEEKIEPD 307 (767)
Q Consensus 284 ~~~~~~~~A~~~~~~~~~~~~~~~ 307 (767)
+..+.......+++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 344444444555556666655443
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.55 E-value=2e+02 Score=22.70 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 047305 174 LINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 174 l~~~~~~~g~~~~A~~~~~~~ 194 (767)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444445555555555444
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.37 E-value=97 Score=24.98 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 047305 67 SAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGD 113 (767)
Q Consensus 67 ~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (767)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444444555555555555444455555555555555443
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.03 E-value=4.1e+02 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 047305 242 NALLNGFCKLRRVDEALALLRSF 264 (767)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~ 264 (767)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555566666666666554
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.86 E-value=2.1e+02 Score=23.39 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444445555555555554444445555555555555554
No 312
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.44 E-value=74 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.6
Q ss_pred HhcCChhHHHHHHHHHHH
Q 047305 681 CKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~ 698 (767)
-+.|++++|+.+|.++++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345666666666665543
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.31 E-value=1.8e+02 Score=23.22 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=18.5
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 047305 67 SAVISMLLKPN-GFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVG 112 (767)
Q Consensus 67 ~~l~~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (767)
..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33344443333 33344444444444433334444444444444333
No 314
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.17 E-value=8.5e+02 Score=28.50 Aligned_cols=83 Identities=7% Similarity=0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+-.+.|.++.+---..|..+.....+--.+.|++-.|.+++.++++.. |....+..++..+- ..| |.-.....++
T Consensus 1267 ~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~-~l~--w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1267 EINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAING-ALG--HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHH-HHS--CHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHH-HcC--CHHHHHHHHh
Confidence 334455555443223344454445555557888888888888888754 55555544443332 344 5666666666
Q ss_pred HHHcCCCC
Q 047305 733 MKSVGYDL 740 (767)
Q Consensus 733 ~~~~~~~~ 740 (767)
+.-..+.+
T Consensus 1342 ~~~~~~p~ 1349 (1354)
T 3lxu_X 1342 MMITAFPS 1349 (1354)
T ss_dssp HHHHHSCS
T ss_pred hhhhhCcc
Confidence 65444433
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.34 E-value=4.8e+02 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 311 YGVMIRGLSEAGKVKDAMKLLSDMR 335 (767)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (767)
.+.++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 4555666666677777777776664
No 316
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.92 E-value=99 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=18.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
+...+..+.+.|+|++|++..+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455667778888888887777764
No 317
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=23.48 E-value=4e+02 Score=23.80 Aligned_cols=49 Identities=10% Similarity=-0.051 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHH---CCCCCCHHHHHHH---H-HHHhhcCCccHHHHHHHHHHHHH
Q 047305 686 LDLAMDVFLYTLK---NGFILRPRVCNYL---L-RSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 686 ~~~A~~~~~~~~~---~~~~~~~~~~~~l---~-~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+.|...|+.+.. ..+.|.+++...+ . -+++.-.+. .++|..+.++.-+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~-~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANS-PEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4667777777654 2567777664442 2 233323455 8888888877654
No 318
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.16 E-value=95 Score=26.66 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=17.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
+..|.+.|.+++|.+++++.....+.+...-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr 154 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFK 154 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHH
Confidence 3457777777777777777766655555443
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.04 E-value=3e+02 Score=22.19 Aligned_cols=43 Identities=12% Similarity=-0.037 Sum_probs=19.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 141 NIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGK 183 (767)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 183 (767)
..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3333344444555555555554433344443334444444443
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.68 E-value=2.3e+02 Score=25.03 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCC
Q 047305 686 LDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDA 742 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 742 (767)
.+++..+|+-+..+++.-....+..-.+.++...|+ +.+|..+++.-.+.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGL-FQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCccHH
Confidence 478999999999999887776666666666767888 99999999998877766643
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.58 E-value=1.3e+02 Score=24.68 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 277 SCLIDGLFRAKRYDEAYAWYRKMF 300 (767)
Q Consensus 277 ~~li~~~~~~~~~~~A~~~~~~~~ 300 (767)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555566666666655553
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.51 E-value=2.9e+02 Score=21.95 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=33.0
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 89 LRSGNVSVVSDVFFVLISGYYKVG-DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
+.+.|...++.- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 445555554432 24455555555 56667777777766655566666655666555555
No 323
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.47 E-value=3.7e+02 Score=23.01 Aligned_cols=141 Identities=15% Similarity=0.042 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 97 VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLIN 176 (767)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 176 (767)
++.+-...+..+.+.+.. +++..+..+.. .++...-...+.++.+.++.+ +...+..+.+ .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 444444555555555543 23332222322 234444444444555444422 2222333332 244445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 177 GLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRR 253 (767)
Q Consensus 177 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (767)
++.+.|+.+ +...+..+.. .++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555555432 2222223332 134444444444444444422 3333333332 2344444444444444443
No 324
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.31 E-value=2e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+|..+...|++++|...|-+++.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~ 45 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIA 45 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.07 E-value=2.7e+02 Score=22.53 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 149 FLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSG 182 (767)
Q Consensus 149 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 182 (767)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555444433333333333334444433
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.76 E-value=2.1e+02 Score=26.36 Aligned_cols=8 Identities=13% Similarity=-0.301 Sum_probs=3.1
Q ss_pred HHCCCCCC
Q 047305 335 RERGIVPD 342 (767)
Q Consensus 335 ~~~~~~~~ 342 (767)
.+.|..++
T Consensus 215 l~~gad~~ 222 (285)
T 3kea_A 215 FKYDINIY 222 (285)
T ss_dssp TTSCBCST
T ss_pred HHcCCCCC
Confidence 33344333
No 327
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.48 E-value=74 Score=22.59 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=19.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
...+++-|+..|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34567777778888888888887754
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.39 E-value=2.7e+02 Score=22.62 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 89 LRSGNVSVVSDVFFVLISGYYKVG-DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
+.+.|...++.-. .++..+...+ .+-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444443222 3333443333 44555666665555444445555444444444444
No 329
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.32 E-value=2e+02 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.6
Q ss_pred HhcCCHHHHHHHHH
Q 047305 319 SEAGKVKDAMKLLS 332 (767)
Q Consensus 319 ~~~g~~~~a~~~~~ 332 (767)
+..|+.+-+.-+++
T Consensus 169 ~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 169 IKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 44555554444443
No 330
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.61 E-value=1.5e+02 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.+...+..+.+.|++++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44557778899999999988776664
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.37 E-value=1.8e+02 Score=23.89 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 047305 174 LINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 174 l~~~~~~~g~~~~A~~~~~~~ 194 (767)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.35 E-value=1.7e+02 Score=23.12 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=20.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 047305 69 VISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVG 112 (767)
Q Consensus 69 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (767)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444434444445555555554444444444444444444444
No 333
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.14 E-value=4.9e+02 Score=23.55 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=87.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 467 MVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGN----INGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
.+..+...|. ..+...+..+.+. ++...-...+.++...|. ....+.++..+... .++...-...+.++.
T Consensus 43 A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~~aL~ 116 (280)
T 1oyz_A 43 SARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTA 116 (280)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred HHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 3334444443 2344444444432 344444444555555553 22233333322222 335544445555554
Q ss_pred hcCC-----HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-CH
Q 047305 543 RVDR-----EEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-EV 616 (767)
Q Consensus 543 ~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~ 616 (767)
..+. ...+...+..+.. .++..+-...+.++...|+. .+...+.++++. +++.+....+.++...| ..
T Consensus 117 ~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 117 QRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLKD--PNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTCCC
T ss_pred HHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC--CCHHHHHHHHHHHHhhccCc
Confidence 4431 2344444444442 45666655666666666652 244444444432 22333334444444433 12
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
..++..+.++-. ++ ++..-...+.++...|+ .+++..+.++++. ++ +....+.++.+.|. +++...+.++
T Consensus 191 ~~~~~~L~~~l~--d~-~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~ 260 (280)
T 1oyz_A 191 SDIRDCFVEMLQ--DK-NEEVRIEAIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTM 260 (280)
T ss_dssp HHHHHHHHHHTT--CS-CHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHH
T ss_pred HHHHHHHHHHhc--CC-CHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHH
Confidence 334444444321 12 23334444555555553 3344444444322 11 22333444444444 3445555444
Q ss_pred H
Q 047305 697 L 697 (767)
Q Consensus 697 ~ 697 (767)
+
T Consensus 261 l 261 (280)
T 1oyz_A 261 L 261 (280)
T ss_dssp H
T ss_pred H
Confidence 4
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.13 E-value=2.5e+02 Score=22.91 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=40.2
Q ss_pred CCCCChhhHHHHHHHHhcCC-CchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChh
Q 047305 58 KRLRSFASNSAVISMLLKPN-GFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCE 115 (767)
Q Consensus 58 ~~~~~~~~~~~l~~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (767)
.+.+.+..=..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 11 ~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 11 AGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp TTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34455555566777776665 66678888888887776677777777777777777543
Done!