BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047306
         (256 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T23|A Chain A, Nmr Solution Structure Of The Archaebacterial Chromosomal
           Protein Mc1
 pdb|2KHL|A Chain A, Refined Solution Structure Of Methanosarcina Thermophila
           Protein Mc1
          Length = 93

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 16/61 (26%)

Query: 129 DEEGNKPVVVYNEQLSQLTL--------------IIQSTLSGSKSVLGNVYKVWRELLDS 174
           DE+GN+  V   +Q  Q  L              II+    G+K V  +V+K W+E++D+
Sbjct: 10  DEDGNEHGVFTGKQPRQAALKAANRGSGTKANPDIIRLRERGTKKV--HVFKAWKEIVDA 67

Query: 175 P 175
           P
Sbjct: 68  P 68


>pdb|3H8N|A Chain A, Crystal Structure Analysis Of Kir2ds4
          Length = 195

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 24  FDVPALYTFSDSVVDAGNNIYYNAISRANYTSYGIDFDGGK-----ATYRFTNGQTEADF 78
           ++ P+L       V AG N+  +  SR++Y  Y +  +G          R  NG  +ADF
Sbjct: 100 YEKPSLSAQPGPTVQAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAVRSINGTFQADF 159


>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
            From Bifidobacterium Longum (Engbf)
          Length = 1376

 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 7    ISQKDLLQHLKLGGHIKFDVPALYTFSDSVVDAGNNIYYNAISRANYTSYGIDF------ 60
            ++QK  L +  +  ++KF+  A Y  S       ++IY  A+ +  Y++  +        
Sbjct: 1014 LTQKGTLVYQTIPQNVKFEAGAKYKVSFDYQSGSDDIYAIAVGQGEYSAGSVKLTNLKKA 1073

Query: 61   --DGGKATYRFTNG 72
              + GKA +  T G
Sbjct: 1074 LGETGKAEFELTGG 1087


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,566,278
Number of Sequences: 62578
Number of extensions: 306268
Number of successful extensions: 671
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)