BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047308
(878 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 185/565 (32%), Positives = 288/565 (50%), Gaps = 70/565 (12%)
Query: 233 LNAGVPSPMGLSF-STDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGD 291
L G P P+G ++ D +NF++FS +A+ V L LY T P +++ N++GD
Sbjct: 12 LRPGDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVK---NKTGD 68
Query: 292 IWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSI----------- 340
IWH + Y YR G + G + + VL+DPYAK I S+
Sbjct: 69 IWHVFVPGLRPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKI 128
Query: 341 -PNHHDLGLPPKYLGR-----LCKEPDFDWGGDVHLN---LPMEKLVVYRLNVMRFSEHK 391
+ DL + G + P F+W + + +P++ V+Y ++V F++ +
Sbjct: 129 GDQNQDLTYDERDSGEYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFTKLR 188
Query: 392 SSKLPPDIAGTFSGVT--EKVHHLKDLGVNAILLEPILSFDEQK----------GPYFPR 439
LP +I GT+ G+ + + +LKDLG+ + L P+ F +Q+ Y P
Sbjct: 189 LD-LPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPI 247
Query: 440 HFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGI 492
+FFSP + + + S K+MV +LH GIEV+++VV+ TA+G + +GI
Sbjct: 248 NFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSFRGI 307
Query: 493 DDSSYYY------AHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASS 546
D+++YY + + T N LN ++P V QM+L+SLR+WVTE H+DGF F A++
Sbjct: 308 DNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAA 367
Query: 547 LLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNF 606
L R + + I A+ DP+LS+ KLIA+ WD + FP+ +WAE N +
Sbjct: 368 LARELYSVNMLNTFFI-ALQQDPILSQVKLIAEPWDVGQGGYQVGNFPY--QWAEWNGKY 424
Query: 607 CNDVRNFFRGEGL-LSDLATRLCGSGDIF-SDGRGPAFSFNYIARNTGLPLVDLVSFSG- 663
+ +R F+RGE L S++A RL GS DI+ + + P S NY+ + G L DLVS++
Sbjct: 425 RDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSHDGFTLEDLVSYNQK 484
Query: 664 ----------GGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGD 713
G+ SWNCG EGPT V+ R KQ RNF+ L VS G P++ GD
Sbjct: 485 HNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGTPMILGGD 544
Query: 714 ECGQSSWGSPSY----ADRKPFDWN 734
E ++ G+ + + FDWN
Sbjct: 545 ELSRTQRGNNNAFCQDNEITWFDWN 569
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 195/677 (28%), Positives = 295/677 (43%), Gaps = 96/677 (14%)
Query: 233 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDI 292
L G P+P+G + G +NF +FS HA+ V LC++D A+ DL SGDI
Sbjct: 4 LAIGKPAPLGAHYDGQG-VNFTLFSAHAERVELCVFD---ANGQEHRYDLP---GHSGDI 56
Query: 293 WHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNH---HDLGLP 349
WH + + YGYR G + +G++ + +L+DP A+ I ++ H
Sbjct: 57 WHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNE 116
Query: 350 PKYLGRLCKEPD-------FDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGT 402
P Y P +DW D P ++Y +V + + ++P +I GT
Sbjct: 117 PDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLT-YLHPEIPVEIRGT 175
Query: 403 FSGVTEKV--HHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGP---------- 450
+ + V ++LK LG+ A+ L P+ F + P R S + P
Sbjct: 176 YKALGHPVMINYLKQLGITALELLPVAQFASE--PRLQRMGLSNYWGYNPVAMFALHPAY 233
Query: 451 SRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA----DG---ALQGIDDSSYYYAHRG 503
+ +A++ ++ +K LH GIEV+L++V +A DG +L+GID+ SYY+ R
Sbjct: 234 ACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWI-RE 292
Query: 504 EG-----IETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSR 558
+G N LN ++P V LR+WV H+DGF F A+ + G E+
Sbjct: 293 DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM--GRTPEFRQD 350
Query: 559 PPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTR---FPHWKRWAELNTNFCNDVRNFFR 615
PL AI P+LS+ KLIA+ WD +AP + FP +AE N +F + R F+
Sbjct: 351 APLFTAIQNCPVLSQVKLIAEPWD---IAPGGYQVGNFP--PLFAEWNDHFRDAARRFWL 405
Query: 616 GEGL-LSDLATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLVSFSG---------- 663
L L A R S D+F +GR P+ + N + + G L D V F+
Sbjct: 406 HYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEEN 465
Query: 664 -GGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWG- 721
G + S N G+EG ++ERR I L L +S G P+L GDE G S G
Sbjct: 466 RDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGN 525
Query: 722 SPSYADRKP---FDWNALATGFGIQITEFISFLSSFRLKRK---ENIDWHGSDHSPPRWE 775
+ +Y DW+ ++G +T F + L R + EN W D + RW
Sbjct: 526 NNAYCQDNQLTWLDWSQASSG----LTAFTAALIHLRKRIPALVENRWWEEGDGN-VRW- 579
Query: 776 DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVD 835
A L D+ ++ IA NA +VLP WH
Sbjct: 580 ---LNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLP----AGEWH---- 628
Query: 836 TALPFPGFFSTEGKPVL 852
A+P F+ E PV+
Sbjct: 629 -AIP---PFAGEDNPVI 641
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 220/542 (40%), Gaps = 93/542 (17%)
Query: 378 VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILS--------- 428
V+Y ++V F+E +S +P GT+ G K +L LGV A+ P+
Sbjct: 180 VIYEVHVRGFTEQDTS-IPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVV 238
Query: 429 ----FDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484
++ Y ++FSP + + ++ + + MV+ H GI+V ++VV+ T
Sbjct: 239 PNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHT 298
Query: 485 ADG--------------ALQGIDDSSYYYAHRGEGIETTNV-LNCNYPT----VQQMILN 525
A+G + +G+D+++YY G N + N+ T Q +I++
Sbjct: 299 AEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVD 358
Query: 526 SLRHWVTEFHIDGFCFINASSLLRG-FHGEYLSRPP-----------LIEAIAFDPLL-- 571
SL +W +DGF F AS L +G Y + P +A + +L
Sbjct: 359 SLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILRE 418
Query: 572 ---------SKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFFRGEGLLSD 622
S L A+ W G + + FP + W+E N F + +R G ++
Sbjct: 419 FTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFP--QGWSEWNGLFRDSLRQAQNELGSMTI 476
Query: 623 LATR----LCGSGDIF-SDGRGPAFSFNYIARNTGLPLVDLVSFSG-------------G 664
T+ GS ++F S GR P S N+I + G+ L D+ S +G G
Sbjct: 477 YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDG 536
Query: 665 GLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDE------CGQS 718
G ++ SW+ G T AV +RR R + +S G P++ GDE C +
Sbjct: 537 GTSTNYSWDQGMSA-GTGAAVDQRRAA--RTGMAFEMLSAGTPLMQGGDEYLRTLQCNNN 593
Query: 719 SWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPD 778
++ S A+ + W + F I+F + R + W+ S W P
Sbjct: 594 AYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSS--WY--SGSQLTWYQPS 649
Query: 779 CKFLAMRLKVDKAESQLS-SESSQTKGD---LYIACNAADHSESVVLPPPPEGMTWHHLV 834
+ + ++ + + + GD +Y+A N S + LP PP G W+ +
Sbjct: 650 GAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVT 709
Query: 835 DT 836
DT
Sbjct: 710 DT 711
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/551 (21%), Positives = 223/551 (40%), Gaps = 110/551 (19%)
Query: 241 MGLSFSTDG-SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES 299
+G +G ++ ++S A V + +YD D+ + L+ G W +++S
Sbjct: 322 LGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEK--GERG-TWKQTLDS 378
Query: 300 T-----WNFVSYGYRFKGSFSQGDGYKSHLESVL-LDPYAKIIV------NSIPNHHDLG 347
T +F Y Y+++ QG ++VL LDPYAK + + I + H +
Sbjct: 379 TNKLGITDFTGYYYQYQIE-RQG-------KTVLALDPYAKSLAAWNSDDSKIDDAHKVA 430
Query: 348 ----LPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIA--- 400
+ P LG P G +H E V+Y +V F+ + + D+
Sbjct: 431 KAAFVDPAKLG-----PQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPA--IAKDLTKPF 483
Query: 401 GTFSGVTEKVHHLKDLGVNAILLEPILSF---DEQKG----------------PYFPRHF 441
GTF EK+ +LKDLGV I L P+LS+ +E K Y P+++
Sbjct: 484 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 543
Query: 442 FSPTKLHGPS-RGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYA 500
FS T ++ + I K ++ ++H G+ +L+VV+ TA L + +YY+
Sbjct: 544 FSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHF 603
Query: 501 HRGEGIETTNV----LNCNYPTVQQMILNSLRHWVTEFHIDGFCFI-----NASSLLRGF 551
+G T+ L + ++++++S+++ V + +DGF F +A+S+ +
Sbjct: 604 MDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAY 663
Query: 552 HGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHG---VAPKDTRFPHWKRWAELNTNFCN 608
P LI ++ + W + P W + + F +
Sbjct: 664 KAARALNPNLI-------------MLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSD 710
Query: 609 DVRNFFR----GEGLLSDLATRLCGSGDIFS---------DGRGPAFSFNYIARNTGLPL 655
D+RN + EG + + IF + P YIA + L L
Sbjct: 711 DIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTL 770
Query: 656 VDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDEC 715
D+++ S S+ A + RRL+ + N + + + G P ++ G E
Sbjct: 771 FDIIAQSIKKDPSK----------AENYAEIHRRLR-LGNLMVL--TAQGTPFIHSGQEY 817
Query: 716 GQS-SWGSPSY 725
G++ + +P+Y
Sbjct: 818 GRTKQFRNPAY 828
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/551 (21%), Positives = 223/551 (40%), Gaps = 110/551 (19%)
Query: 241 MGLSFSTDG-SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES 299
+G +G ++ ++S A V + +YD D+ + L+ G W +++S
Sbjct: 15 LGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEK--GERG-TWKQTLDS 71
Query: 300 T-----WNFVSYGYRFKGSFSQGDGYKSHLESVL-LDPYAKIIV------NSIPNHHDLG 347
T +F Y Y+++ QG ++VL LDPYAK + + I + H +
Sbjct: 72 TNKLGITDFTGYYYQYQIE-RQG-------KTVLALDPYAKSLAAWNSDDSKIDDAHKVA 123
Query: 348 ----LPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIA--- 400
+ P LG P G +H E V+Y +V F+ + + D+
Sbjct: 124 KAAFVDPAKLG-----PQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPA--IAKDLTKPF 176
Query: 401 GTFSGVTEKVHHLKDLGVNAILLEPILSF---DEQKG----------------PYFPRHF 441
GTF EK+ +LKDLGV I L P+LS+ +E K Y P+++
Sbjct: 177 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 236
Query: 442 FSPTKLHGPS-RGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYA 500
FS T ++ + I K ++ ++H G+ +L+VV+ TA L + +YY+
Sbjct: 237 FSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHF 296
Query: 501 HRGEGIETTNV----LNCNYPTVQQMILNSLRHWVTEFHIDGFCFI-----NASSLLRGF 551
+G T+ L + ++++++S+++ V + +DGF F +A+S+ +
Sbjct: 297 MDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAY 356
Query: 552 HGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHG---VAPKDTRFPHWKRWAELNTNFCN 608
P LI ++ + W + P W + + F +
Sbjct: 357 KAARALNPNLI-------------MLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSD 403
Query: 609 DVRNFFR----GEGLLSDLATRLCGSGDIFS---------DGRGPAFSFNYIARNTGLPL 655
D+RN + EG + + IF + P YIA + L L
Sbjct: 404 DIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTL 463
Query: 656 VDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDEC 715
D+++ S S+ A + RRL+ + N + + + G P ++ G E
Sbjct: 464 FDIIAQSIKKDPSK----------AENYAEIHRRLR-LGNLMVL--TAQGTPFIHSGQEY 510
Query: 716 GQS-SWGSPSY 725
G++ + +P+Y
Sbjct: 511 GRTKQFRNPAY 521
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/551 (21%), Positives = 223/551 (40%), Gaps = 110/551 (19%)
Query: 241 MGLSFSTDG-SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES 299
+G +G ++ ++S A V + +YD D+ + L+ G W +++S
Sbjct: 16 LGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEK--GERG-TWKQTLDS 72
Query: 300 T-----WNFVSYGYRFKGSFSQGDGYKSHLESVL-LDPYAKIIV------NSIPNHHDLG 347
T +F Y Y+++ QG ++VL LDPYAK + + I + H +
Sbjct: 73 TNKLGITDFTGYYYQYQIE-RQG-------KTVLALDPYAKSLAAWNSDDSKIDDAHKVA 124
Query: 348 ----LPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIA--- 400
+ P LG P G +H E V+Y +V F+ + + D+
Sbjct: 125 KAAFVDPAKLG-----PQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPA--IAKDLTKPF 177
Query: 401 GTFSGVTEKVHHLKDLGVNAILLEPILSF---DEQKG----------------PYFPRHF 441
GTF EK+ +LKDLGV I L P+LS+ +E K Y P+++
Sbjct: 178 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 237
Query: 442 FSPTKLHGPS-RGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYA 500
FS T ++ + I K ++ ++H G+ +L+VV+ TA L + +YY+
Sbjct: 238 FSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHF 297
Query: 501 HRGEGIETTNV----LNCNYPTVQQMILNSLRHWVTEFHIDGFCFI-----NASSLLRGF 551
+G T+ L + ++++++S+++ V + +DGF F +A+S+ +
Sbjct: 298 MDADGTPRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAY 357
Query: 552 HGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHG---VAPKDTRFPHWKRWAELNTNFCN 608
P LI ++ + W + P W + + F +
Sbjct: 358 KAARALNPNLI-------------MLGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSD 404
Query: 609 DVRNFFR----GEGLLSDLATRLCGSGDIFS---------DGRGPAFSFNYIARNTGLPL 655
D+RN + EG + + IF + P YIA + L L
Sbjct: 405 DIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDDLTL 464
Query: 656 VDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDEC 715
D+++ S S+ A + RRL+ + N + + + G P ++ G E
Sbjct: 465 FDIIAQSIKKDPSK----------AENYAEIHRRLR-LGNLMVL--TAQGTPFIHSGQEY 511
Query: 716 GQS-SWGSPSY 725
G++ + +P+Y
Sbjct: 512 GRTKQFRNPAY 522
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 118/541 (21%), Positives = 219/541 (40%), Gaps = 112/541 (20%)
Query: 241 MGLSFSTDGS-LNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES 299
+G + DGS + +++S A V + +YD +R P + + +W +++
Sbjct: 135 LGAVLNQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATT---PLVKNNKGVWQTILDT 191
Query: 300 TWNFVSY-GYRFKGSFSQGDGYKSHLESVLLDPYAK--------IIVNSIPNHHDLGLPP 350
+Y GY + +G K ++ +LDPYAK + + I + P
Sbjct: 192 KLGIKNYTGYYYLYEIKRG---KDKVK--ILDPYAKSLAEWDSNTVNDDIKTAKAAFVNP 246
Query: 351 KYLG----RLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKS--SKLPPDIAGTFS 404
LG K +F D V+Y +V F+ +S KL + GTF+
Sbjct: 247 SQLGPQNLSFAKIANFKGRQDA---------VIYEAHVRDFTSDQSLDGKLKNQL-GTFA 296
Query: 405 GVTEKVHHLKDLGVNAILLEPILSF------DEQKGP------------YFPRHFFSPTK 446
+EK+ +L+ LGV I L P+LS+ D+ + Y P+ +F+ +
Sbjct: 297 AFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSG 356
Query: 447 LHGPSRGSISA-INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEG 505
++ SA I +K+++ +H G+ V+L+VV+ TA L + +YY+ +G
Sbjct: 357 MYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNEDG 416
Query: 506 IETTNV----LNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPL 561
+ L + ++++++S+++ +EF +DGF F + G H
Sbjct: 417 SPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFD-----MMGDHDAAAIELAY 471
Query: 562 IEAIAFDPLLSKAKLIADYW------DPHGVAPKDTRFPHWKRWAELNTNFCNDVRN--- 612
EA A +P + +I + W V P D W + + F +D+RN
Sbjct: 472 KEAKAINPNMI---MIGEGWRTFQGDQGKPVKPADQ---DWMKSTDTVGVFSDDIRNSLK 525
Query: 613 ----------FFRG-----EGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVD 657
F G +G+ ++ + G+ +D P YIA + L L D
Sbjct: 526 SGFPNEGTPAFITGGPQSLQGIFKNIKAQ---PGNFEAD--SPGDVVQYIAAHDNLTLHD 580
Query: 658 LVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQ 717
+++ S + P + RRL+ + N + + S G ++ G E G+
Sbjct: 581 VIAKSIN------------KDPKVAEEDIHRRLR-LGNVMIL--TSQGTAFIHSGQEYGR 625
Query: 718 S 718
+
Sbjct: 626 T 626
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 364 WGGDVHLNLPMEKL--VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEK-----------V 410
W GD H P + V+Y +V FS +S + G + TE +
Sbjct: 419 WQGD-HEQTPANPVDEVIYEAHVRDFSIDANSGMKN--KGKYLAFTEHGTKGPDHVKTGI 475
Query: 411 HHLKDLGVNAILLEPILSFD--EQKGP------YFPRHFFSPTKLHGPSRGSISAINSMK 462
LK+LG+ + L+P+ F+ ++ P Y PR++ P + + + I +K
Sbjct: 476 DSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELK 535
Query: 463 EMVKKLHANGIEVLLEVVFTRTADGALQGIDD--SSYYYAHRGEGIETT-----NVLNCN 515
++++ LH I V ++VV+ T D + D YYY G T N
Sbjct: 536 QLIQSLHQQRIGVNMDVVYNHTFDVMVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATE 595
Query: 516 YPTVQQMILNSLRHWVTEFHIDGFCF 541
+P Q+ +L+S+ +WV E+H+DGF F
Sbjct: 596 HPMAQKFVLDSVNYWVNEYHVDGFRF 621
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 162/364 (44%), Gaps = 53/364 (14%)
Query: 372 LPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE 431
L E L++Y ++V F+ P+ GTF GV K+ +LKDLG+ AI + PI F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 432 QKG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490
++ Y + ++ +G G +++V + H G+ V+L+VV+
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEG-------FRKLVDEAHKKGLGVILDVVYNHVGPEGNY 199
Query: 491 GIDDSSYY-YAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR 549
+ Y+ ++ T N + V++ IL ++ +W+ E+++DGF L
Sbjct: 200 MVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR-------LE 252
Query: 550 GFHGEYLSRPP-LIEAIAFDPLLSKAKLI---ADYWDPHGVAPKDT-RFPHWKRWAELNT 604
H + P ++E IA D + +++ +D DP V PK+ + +W +
Sbjct: 253 AVHAIIDTSPKHILEEIA-DVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVD--- 308
Query: 605 NFCNDVRNFFRGE--GLLSD---LATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDL 658
+F + + + GE G +D L + D+F DG+ N+ + G P+ +L
Sbjct: 309 DFHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYS----NFRRKTHGEPVGEL 364
Query: 659 VSFSGGGLASELSWN--CGEEGPTTK-TAVLERRLKQIRNFLFVLYVSLGVPILNMGDEC 715
G + + G G + +++R +I L++L S +P++ MG+E
Sbjct: 365 ---DGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLL--SPYIPMIFMGEEY 419
Query: 716 GQSS 719
G+ +
Sbjct: 420 GEEN 423
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 162/363 (44%), Gaps = 51/363 (14%)
Query: 372 LPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE 431
L E L++Y ++V F+ P+ GTF GV K+ +LKDLG+ AI + PI F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 432 QKG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490
++ Y + ++ +G G +++V + H G+ V+L+VV+
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEG-------FRKLVDEAHKKGLGVILDVVYNHVGPEGNY 199
Query: 491 GIDDSSYY-YAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR 549
+ Y+ ++ T N + V++ IL ++ +W+ E+++DGF +++
Sbjct: 200 MVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIID 259
Query: 550 GFHGEYLSRPPLIEAIAFDPLLSKAKLI---ADYWDPHGVAPKDT-RFPHWKRWAELNTN 605
S ++E IA D + +++ +D DP V PK+ + +W + +
Sbjct: 260 ------TSPKHILEEIA-DVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVD---D 309
Query: 606 FCNDVRNFFRGE--GLLSD---LATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLV 659
F + + + GE G +D L + D+F DG+ N+ + G P+ +L
Sbjct: 310 FHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYS----NFRRKTHGEPVGEL- 364
Query: 660 SFSGGGLASELSWN--CGEEGPTTK-TAVLERRLKQIRNFLFVLYVSLGVPILNMGDECG 716
G + + G G + +++R +I L++L S +P++ MG+E G
Sbjct: 365 --DGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLL--SPYIPMIFMGEEYG 420
Query: 717 QSS 719
+ +
Sbjct: 421 EEN 423
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 162/363 (44%), Gaps = 51/363 (14%)
Query: 372 LPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE 431
L E L++Y ++V F+ P+ GTF GV K+ +LKDLG+ AI + PI F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 432 QKG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490
++ Y + ++ +G G +++V + H G+ V+L+VV+
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEG-------FRKLVDEAHKKGLGVILDVVYNHVGPEGNY 199
Query: 491 GIDDSSYY-YAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR 549
+ Y+ ++ T N + V++ IL ++ +W+ E+++DGF +++
Sbjct: 200 MVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIID 259
Query: 550 GFHGEYLSRPPLIEAIAFDPLLSKAKLI---ADYWDPHGVAPKDT-RFPHWKRWAELNTN 605
S ++E IA D + +++ +D DP V PK+ + +W + +
Sbjct: 260 ------TSPKHILEEIA-DVVHKYNRIVIAQSDLNDPRVVNPKEKCGYNIDAQWVD---D 309
Query: 606 FCNDVRNFFRGE--GLLSD---LATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLV 659
F + + + GE G +D L + D+F DG+ N+ + G P+ +L
Sbjct: 310 FHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYS----NFRRKTHGEPVGEL- 364
Query: 660 SFSGGGLASELSWN--CGEEGPTTK-TAVLERRLKQIRNFLFVLYVSLGVPILNMGDECG 716
G + + G G + +++R +I L++L S +P++ MG+E G
Sbjct: 365 --DGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLL--SPYIPMIFMGEEYG 420
Query: 717 QSS 719
+ +
Sbjct: 421 EEN 423
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 162/363 (44%), Gaps = 51/363 (14%)
Query: 372 LPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE 431
L E L++Y ++V F+ P+ GTF GV K+ +LKDLG+ AI + PI F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 432 QKG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490
++ Y + ++ +G G +++V + H G+ V+L+VV+
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEG-------FRKLVDEAHKKGLGVILDVVYNHVGPEGNY 199
Query: 491 GIDDSSYY-YAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR 549
+ Y+ ++ T N + V++ IL ++ +W+ E+++DGF +++
Sbjct: 200 MVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIID 259
Query: 550 GFHGEYLSRPPLIEAIAFDPLLSKAKLI---ADYWDPHGVAPKD-TRFPHWKRWAELNTN 605
S ++E IA D + +++ +D DP V PK+ + +W + +
Sbjct: 260 ------TSPKHILEEIA-DVVHKYNRIVIAESDLNDPRVVNPKEKVGYNIDAQWVD---D 309
Query: 606 FCNDVRNFFRGE--GLLSD---LATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLV 659
F + + + GE G +D L + D+F DG+ N+ + G P+ +L
Sbjct: 310 FHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYS----NFRRKTHGEPVGEL- 364
Query: 660 SFSGGGLASELSWN--CGEEGPTTK-TAVLERRLKQIRNFLFVLYVSLGVPILNMGDECG 716
G + + G G + +++R +I L++L S +P++ MG+E G
Sbjct: 365 --DGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLL--SPYIPMIFMGEEYG 420
Query: 717 QSS 719
+ +
Sbjct: 421 EEN 423
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 162/363 (44%), Gaps = 51/363 (14%)
Query: 372 LPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE 431
L E L++Y ++V F+ P+ GTF GV K+ +LKDLG+ AI + PI F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 432 QKG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490
++ Y + ++ +G G +++V + H G+ V+L+VV+
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEG-------FRKLVDEAHKKGLGVILDVVYNHVGPEGNY 199
Query: 491 GIDDSSYY-YAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR 549
+ Y+ ++ T N + V++ IL ++ +W+ E+++DGF +++
Sbjct: 200 MVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIID 259
Query: 550 GFHGEYLSRPPLIEAIAFDPLLSKAKLI---ADYWDPHGVAPKDT-RFPHWKRWAELNTN 605
S ++E IA D + +++ +D DP V PK+ + +W + +
Sbjct: 260 ------TSPKHILEEIA-DVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVD---D 309
Query: 606 FCNDVRNFFRGE--GLLSD---LATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLV 659
F + + + GE G +D L + D+F DG+ N+ + G P+ +L
Sbjct: 310 FHHSIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYS----NFRRKTHGEPVGEL- 364
Query: 660 SFSGGGLASELSWN--CGEEGPTTK-TAVLERRLKQIRNFLFVLYVSLGVPILNMGDECG 716
G + + G G + +++R +I L++L S +P++ MG+E G
Sbjct: 365 --DGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLL--SPYIPMIFMGEEYG 420
Query: 717 QSS 719
+ +
Sbjct: 421 EEN 423
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 378 VVYRLNVMRFSEHKSS---------KLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILS 428
V+Y ++ FS H++S L T +G + + ++K+LGV + L P+
Sbjct: 216 VIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVND 275
Query: 429 F---DEQK------GPYFPRHFFSP-----TKLHGPSRGSISAINSMKEMVKKLHANGIE 474
F DE+K Y P HFF+P + H P + +K+M+ LH +G+
Sbjct: 276 FAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQ----TRKTELKQMINTLHQHGLR 331
Query: 475 VLLEVVFTRTADGALQGIDDS--SYYYAHR-----GEGIETTNVLNCNYPTVQQMILNSL 527
V+L+VVF + + Y++ H G N + ++ I + +
Sbjct: 332 VILDVVFNHVYKRENSPFEKTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCV 391
Query: 528 RHWVTEFHIDGFCF 541
+W+ E+++DGF F
Sbjct: 392 VYWLEEYNVDGFRF 405
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 330 DPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSE 389
DPYA+ + + + + FDW + + V Y ++V F+
Sbjct: 90 DPYARFLPDGVHGE----------AEVVDFGTFDWTDADWHGIKLADCVFYEVHVGTFTP 139
Query: 390 HKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKG-PYFPRHFFSPTKLH 448
GT+ EK+ +LK+LGV AI + P+ +FD Q+G Y F++P +
Sbjct: 140 E----------GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPY 189
Query: 449 GPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIET 508
G + +V H G+ V L+VV+ G SSY ++ + +
Sbjct: 190 GRP-------EDLMALVDAAHRLGLGVFLDVVYNHFGP---SGNYLSSYAPSYFTDRFSS 239
Query: 509 TNVLNCNY--PTVQQMILNSLRHWVTEFHIDGF 539
+ +Y P +++ + + R W+ ++H DG
Sbjct: 240 AWGMGLDYAEPHMRRYVTGNARMWLRDYHFDGL 272
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 33/213 (15%)
Query: 330 DPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSE 389
DPYA+ + + + + FDW + + V Y ++V F+
Sbjct: 90 DPYARFLPDGVHGE----------AEVVDFGTFDWTDADWHGIKLADCVFYEVHVGTFTP 139
Query: 390 HKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKG-PYFPRHFFSPTKLH 448
GT+ EK+ +LK+LGV AI + P+ +FD Q+G Y F++P +
Sbjct: 140 E----------GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYAPYAPY 189
Query: 449 GPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIET 508
G + +V H G+ V L+VV+ G SSY ++ + +
Sbjct: 190 GRP-------EDLXALVDAAHRLGLGVFLDVVYNHFGP---SGNYLSSYAPSYFTDRFSS 239
Query: 509 TNVLNCNY--PTVQQMILNSLRHWVTEFHIDGF 539
+Y P ++ + + R W+ ++H DG
Sbjct: 240 AWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGL 272
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 142/369 (38%), Gaps = 66/369 (17%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKG 434
E+ VVY ++ F+ GTF K+ +L +LGV I + P+ F ++G
Sbjct: 135 EQAVVYEMHTGTFTPE----------GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERG 184
Query: 435 -PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA-DGALQGI 492
Y ++P +G + K + H G+ V+L++V +G +
Sbjct: 185 WGYDGVLLYAPHSAYGTP-------DDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPL 237
Query: 493 DDSSYYYAHR----GEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF-----IN 543
++++ R G GI + V++ I+ + +W+TE+H+DG F I
Sbjct: 238 LAPAFFHKERMTPWGNGIA------YDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIE 291
Query: 544 ASSLLRGFHGEYLSRPPLIEAIAFDPLL-----SKAKLIADYWDPHGVAPKDTRFPHWKR 598
SS R E R + E I P+ S+ + D G AP T
Sbjct: 292 DSS-ARHVLVEIAQR--IREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFT------- 341
Query: 599 WAELNTNFCNDVRNFFRGE--GLLSDLA-------TRLCGSGDIFSDGRGPAFSFNYIAR 649
AE N +F N V F GE +D A R G + P +
Sbjct: 342 -AEWNDDFHNAVHVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVK 400
Query: 650 NTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPIL 709
+TG P V V F + + +G T R K + L L +S +P+L
Sbjct: 401 STGQPPVAFVDF----IQNHDQVGNRAQGDRLITLAGAERTKVL---LATLLLSPHIPLL 453
Query: 710 NMGDECGQS 718
MG+E G+S
Sbjct: 454 FMGEEYGES 462
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 134/363 (36%), Gaps = 81/363 (22%)
Query: 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAI 458
G GV + + HL LGVNA+ P+ Y +F G
Sbjct: 167 FGGDLQGVIDHLDHLSKLGVNAVYFTPLFK-ATTNHKYDTEDYFQIDPQFGDK------- 218
Query: 459 NSMKEMVKKLHANGIEVLLEVVFTRTAD------GALQGIDDSSY--YYAHRG------E 504
+++K++V H GI VLL+ VF + L+ + S Y ++ R +
Sbjct: 219 DTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVD 278
Query: 505 GIETTNV---------LNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEY 555
GI T + LN +P V++ +L + +W+ E IDG+ A+ + F E+
Sbjct: 279 GIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREF 338
Query: 556 LSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFFR 615
R + +A +P A ++ + W + + +F A +N F N V +FF
Sbjct: 339 --RRVVKQA---NP---DAYILGEVWHESSIWLEGDQFD-----AVMNYPFTNAVLDFF- 384
Query: 616 GEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCG 675
I FSF + G P ASE+ +N
Sbjct: 385 -----------------IHQIADAEKFSFMLGKQLAGYP----------RQASEVMFNLL 417
Query: 676 EEGPTTKTAVL----ERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPF 731
+ T + +R++K F F + G P + GDE G P RK
Sbjct: 418 DSHDTARLLTQADGDKRKMKLAVLFQFTYF---GTPCIYYGDEVGLDGGHDPGC--RKCM 472
Query: 732 DWN 734
+W+
Sbjct: 473 EWD 475
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 461 MKEMVKKLHANGIEVLLEVVFTRTADGALQGID---------DSSYYYAHRG-EGIETTN 510
+K +V K H+ G+ VL++VV + ++ G++ +S ++ RG + +
Sbjct: 253 LKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSR 312
Query: 511 VLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHG----------EYLSRPP 560
+ N V + +L++LR+W+ EF DGF F +S+L HG EY S
Sbjct: 313 LFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDT 372
Query: 561 LIEAIAF--------DPLLSKAKLIAD 579
++AI + LL +A ++A+
Sbjct: 373 DVDAIVYMMLANHLMHKLLPEATIVAE 399
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 461 MKEMVKKLHANGIEVLLEVVFTRTADGALQGID---------DSSYYYAHRG-EGIETTN 510
+K +V K H+ G+ VL++VV + ++ G++ +S ++ RG + +
Sbjct: 253 LKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSR 312
Query: 511 VLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHG----------EYLSRPP 560
+ N V + +L++LR+W+ EF DGF F +S+L HG EY S
Sbjct: 313 LFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDT 372
Query: 561 LIEAIAF--------DPLLSKAKLIAD 579
++AI + LL +A ++A+
Sbjct: 373 DVDAIVYMMLANHLMHKLLPEATIVAE 399
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 136/368 (36%), Gaps = 90/368 (24%)
Query: 240 PMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES 299
P+G FS D S++ +++ AQGV +C +D PALE + S +W +
Sbjct: 128 PLGAVFSED-SVSLHLWAPTAQGVSVCFFDGPAG--PALET---VQLKESNGVWSVTGPR 181
Query: 300 TWNFVSYGYRFKGSFSQGDGYKSHLESVLL----DPYAKIIVNS-----IPNHHDLGLPP 350
W Y Y D Y VL DPYA+ + + + + ++ L P
Sbjct: 182 EWENRYYLYEV-------DVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKP 234
Query: 351 KYLGRLCKE-PDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTF------ 403
L E P D D+ +Y L++ FS H + + D G F
Sbjct: 235 ASWDELADEKPKLDSFSDI---------TIYELHIRDFSAHDGT-VDSDSRGGFRAFAYQ 284
Query: 404 -SGVTEKVHHLKDLGVNAILLEPILSF-------------DEQKGPYFP----------- 438
S E + L D G+ + L P F DE + FP
Sbjct: 285 ASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVV 344
Query: 439 --------RHFFSPTKLHGPSRGSI-------SAINSMKEMVKKLHANGIEVLLEVVFTR 483
++P L G +GS S I ++MV+ L+ G+ V+++VV+
Sbjct: 345 AIQEEDPYNWGYNPV-LWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNH 403
Query: 484 TADGALQGIDD------SSYYYAHRGEG-IETTNVLN---CNYPTVQQMILNSLRHWVTE 533
GI YY G IE + +N + V ++I++ L +W
Sbjct: 404 LDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVN 463
Query: 534 FHIDGFCF 541
+ +DGF F
Sbjct: 464 YKVDGFRF 471
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 378 VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE--QKGP 435
++Y + V +SE AG F+GVT + +KDLG + + L PI E +KG
Sbjct: 14 MIYSVFVRNYSE----------AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGT 63
Query: 436 YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDS 495
+ + P G+++ K + + H G++V+L++V+ T+ ++ +
Sbjct: 64 LGSPYAIKDYRGINPEYGTLA---DFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHP 120
Query: 496 SYYYAHRGEGIETTNV--------LNCNYPTVQQMILNSLRHWVTEFHIDGF 539
++Y H +G T V L+ + + Q +++L +W ++F +DG+
Sbjct: 121 EWFY-HDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW-SQF-VDGY 169
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAIN 459
GT GV EK+ +L DLGV AI L P+ + Y +F + G +
Sbjct: 46 GGTLWGVAEKLPYLLDLGVEAIYLNPVFA-STANHRYHTVDYFQVDPILGGN-------E 97
Query: 460 SMKEMVKKLHANGIEVLLEVVFTRTADG--ALQGI----DDSSY--YYAHRGEGIETTNV 511
+++ +++ HA+G+ V+L+ VF T G A Q + + S Y +Y +G ++
Sbjct: 98 ALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRDWYHVKGFPLKAYTA 157
Query: 512 ---------------LNCNYPTVQQMILNSLRHWVTEFHIDGF 539
L P V++ +L HW+ F +DG+
Sbjct: 158 HPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGW 199
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 138/393 (35%), Gaps = 84/393 (21%)
Query: 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAI 458
G G+ + + +L DLG+ I L PI Y +F G
Sbjct: 171 FGGDLQGIIDHLDYLADLGITGIYLTPIFR-APSNHKYDTADYFEIDPHFGDK------- 222
Query: 459 NSMKEMVKKLHANGIEVLLEVVFTRTA------DGALQGIDDSSY--YYAHRGEGIET-- 508
++K +VK+ H GI V+L+ VF L+ S Y ++ R ++T
Sbjct: 223 ETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEP 282
Query: 509 ------------TNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYL 556
LN +P V++ +L+ +W+ EF IDG+ A+ + F E+
Sbjct: 283 RPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREFR 342
Query: 557 SRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRW----AELNTNFCNDVRN 612
A L ++ + W H P W R A +N +
Sbjct: 343 Q--------AVKALKPDVYILGEIW--HDAMP-------WLRGDQFDAVMNYPLADAALR 385
Query: 613 FFRGEGL-LSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELS 671
FF E + S+ A RL + A +FN + + L+ +
Sbjct: 386 FFAKEDMSASEFADRLMHVLHSYPKQVNEA-AFNLLGSHDTPRLLTV------------- 431
Query: 672 WNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPF 731
CG G K +L FLF L + G P + GDE G + P RK
Sbjct: 432 --CG--GDVRKVKLL---------FLFQLTFT-GSPCIYYGDEIGMTGGNDPEC--RKCM 475
Query: 732 DWNALATGFGI--QITEFISFLSSFRLKRKENI 762
W+ + + + I+ +R R+ ++
Sbjct: 476 VWDPEKQNKELYEHVKQLIALRKQYRALRRGDV 508
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 30/179 (16%)
Query: 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAI 458
G G+ + + +L DLG+ I L PI Y +F G
Sbjct: 171 FGGDLQGIIDHLDYLADLGITGIYLTPIFR-APSNHKYDTADYFEIDPHFGDK------- 222
Query: 459 NSMKEMVKKLHANGIEVLLEVVFTRTA------DGALQGIDDSSY--YYAHRGEGIET-- 508
++K +VK+ H GI V+L+ VF L+ S Y ++ R ++T
Sbjct: 223 ETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEP 282
Query: 509 ------------TNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEY 555
LN +P V++ +L+ +W+ EF IDG+ A+ + F E+
Sbjct: 283 RPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREF 341
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 396 PPDIAGTFSGVTEKVHHLKDLGVNAILLEPI--LSFDEQKG----PYFPRHFFSPTKLHG 449
P + F + + + LK +G+N + L PI + +KG PY R ++ L G
Sbjct: 17 PGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYEIDLLIG 76
Query: 450 PSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA-DGALQGIDDSSYYYAHRGEGIET 508
++G K+ VK+ H + VL+++V A D L + G
Sbjct: 77 -TKGD------FKKFVKRAHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDENGNPTRK 129
Query: 509 ----TNVLNCNYPT--VQQMILNSLRHWVTEFHIDGF 539
++V++ +Y +++ ++N +R+WV EF +DGF
Sbjct: 130 VPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGF 166
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 141/399 (35%), Gaps = 84/399 (21%)
Query: 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAI 458
G G+ + + +L DLG+ I L PI Y +F G
Sbjct: 171 FGGDLQGIIDHLDYLVDLGITGIYLTPIFR-SPSNHKYDTADYFEVDPHFGDK------- 222
Query: 459 NSMKEMVKKLHANGIEVLLEVVFTRTAD--GALQGI---DDSSYY--YAHRGEGIETTN- 510
++K ++ + H GI V+L+ VF Q + +SS Y + H E T
Sbjct: 223 ETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEP 282
Query: 511 --------------VLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYL 556
LN P V++ +L+ +W+ EF IDG+ A+ + F E+
Sbjct: 283 RPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFR 342
Query: 557 SRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRW----AELNTNFCNDVRN 612
E A P ++ + W H P W R A +N F + V
Sbjct: 343 Q-----EVKALKP---DVYILGEIW--HDAMP-------WLRGDQFDAVMNYPFTDGVLR 385
Query: 613 FFRGEGLLS-DLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELS 671
FF E + + A ++ + + A +FN + G S +
Sbjct: 386 FFAKEEISARQFANQMMHVLHSYPNNVNEA-AFNLL---------------GSHDTSRIL 429
Query: 672 WNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPF 731
CG G K +L FLF L + G P + GDE G + P RK
Sbjct: 430 TVCG--GDIRKVKLL---------FLFQLTFT-GSPCIYYGDEIGMTGGNDPEC--RKCM 475
Query: 732 DWNALATGFGI--QITEFISFLSSFRLKRKENIDWHGSD 768
W+ + + + + I+ +R R+ I + +D
Sbjct: 476 VWDPMQQNKELHQHVKQLIALRKQYRSLRRGEISFLHAD 514
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 140/399 (35%), Gaps = 84/399 (21%)
Query: 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAI 458
G G+ + + +L DLG+ I L PI Y +F G
Sbjct: 171 FGGDLQGIIDHLDYLVDLGITGIYLTPIFR-SPSNHKYDTADYFEVDPHFGDK------- 222
Query: 459 NSMKEMVKKLHANGIEVLLEVVFTRTAD--GALQGI---DDSSYY--YAHRGEGIETTN- 510
++K ++ + H GI V+L+ VF Q + +SS Y + H E T
Sbjct: 223 ETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEP 282
Query: 511 --------------VLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYL 556
LN P V++ +L+ +W+ EF IDG+ A+ + F E+
Sbjct: 283 RPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFR 342
Query: 557 SRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRW----AELNTNFCNDVRN 612
E A P ++ W H P W R A +N F + V
Sbjct: 343 Q-----EVKALKP---DVYILGQIW--HDAMP-------WLRGDQFDAVMNYPFTDGVLR 385
Query: 613 FFRGEGLLS-DLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELS 671
FF E + + A ++ + + A +FN + G S +
Sbjct: 386 FFAKEEISARQFANQMMHVLHSYPNNVNEA-AFNLL---------------GSHDTSRIL 429
Query: 672 WNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPF 731
CG G K +L FLF L + G P + GDE G + P RK
Sbjct: 430 TVCG--GDIRKVKLL---------FLFQLTFT-GSPCIYYGDEIGMTGGNDPEC--RKCM 475
Query: 732 DWNALATGFGI--QITEFISFLSSFRLKRKENIDWHGSD 768
W+ + + + + I+ +R R+ I + +D
Sbjct: 476 VWDPMQQNKELHQHVKQLIALRKQYRSLRRGEISFLHAD 514
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKA 574
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+ A
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRR---LVKSLNPDALIVGA 354
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETYAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 47/219 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEY 555
P V++ + + R W+ E IDG+ A+ + F E+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREF 338
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 47/219 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEY 555
P V++ + + R W+ E IDG+ A+ + F E+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREF 338
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETAAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLDVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLNVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKK 467
E ++ D G + L P+ + P+ + T + P+ + + +V
Sbjct: 268 ELTDYIVDQGFTHVELLPV-----AEHPFAGSWGYQVTSYYAPT-SRFGTPDDFRALVDA 321
Query: 468 LHANGIEVLLEVVFTR-TADGALQGIDDSSYYYAH----RGEGIE-TTNVLNCNYPTVQQ 521
LH GI V+++ V D G D + Y H RGE ++ T V + P V+
Sbjct: 322 LHQAGIGVIVDWVPAHFPKDAWALGRFDGTPLYEHSDPKRGEQLDWGTYVFDFGRPEVRN 381
Query: 522 MILNSLRHWVTEFHIDGFCFINASSLL 548
++ + +W+ EFHIDG +S+L
Sbjct: 382 FLVANALYWLQEFHIDGLRVDAVASML 408
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 50/235 (21%)
Query: 375 EKLVVYRLNVMRFSEHKSSKLPPDI---------------AGTFSGVTEKVHHLKDLGVN 419
++ V+Y++ RF+ S PP G GV +++ +L++LGV
Sbjct: 129 KEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVT 188
Query: 420 AILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479
A+ PI + P H T + + + + +V + H GI+++L+
Sbjct: 189 ALYFTPIFA--------SPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA 240
Query: 480 VFTRTAD------GALQGIDDSSYYYAHRGEGIETTNVLNCNY----------------- 516
VF D LQ + S Y E + NY
Sbjct: 241 VFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTEN 300
Query: 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLL 571
P V++ + + R W+ E IDG+ A+ + F E+ L++++ D L+
Sbjct: 301 PEVKEYLFDVARFWM-EQGIDGWRLNVANEVDHAFWREFRR---LVKSLNPDALI 351
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G F G+ V +LK+LG++ + L P+ S G Y F+S +G R
Sbjct: 17 DGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHG-YDVVDFYSFKAEYGSER----- 70
Query: 458 INSMKEMVKKLHANGIEVLLEV 479
KEM++ H +GI+V+L++
Sbjct: 71 --EFKEMIEAFHDSGIKVVLDL 90
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAIN 459
G G+ EK+ HL +LG+NAI L PI S G Y +F + G R + ++
Sbjct: 235 GGDLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHG-YDIVDYFHVARRLGGDRAFVDLLS 293
Query: 460 SMKEMVKKLHANGIEVLLEVVFTRTA 485
+K I+V+L+ VF T+
Sbjct: 294 ELKRF-------DIKVILDGVFHHTS 312
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 25 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 70
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 71 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 106
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 25 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 70
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 71 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 106
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 26 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 71
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 72 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 107
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 26 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 71
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 72 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 107
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 25 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 70
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 71 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 106
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 26 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 71
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 72 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 107
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 21/96 (21%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHG----PSRG 453
D G F G+TEK+ +LK LG++AI + P H+ SP +G R
Sbjct: 53 DGIGDFKGLTEKLDYLKGLGIDAIWINP--------------HYASPNTDNGYDISDYRE 98
Query: 454 SISAINSMKE---MVKKLHANGIEVLLEVVFTRTAD 486
+ +M++ ++ +L G+ ++++VV ++D
Sbjct: 99 VMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 134
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 436 YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLEVVFTRTADGALQGIDD 494
Y P H+ P + + I + M++ + + G+ V+++VV+ T A D
Sbjct: 559 YDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT--NAAGPTDR 616
Query: 495 SS-------YYYAHRGEGIETTNVLNC------NYPTVQQMILNSLRHWVTEFHIDGFCF 541
+S +YY E + C + ++I +SL W T++ IDGF F
Sbjct: 617 TSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRF 676
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 436 YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLEVVFTRTADGALQGIDD 494
Y P H+ P + + I + M++ + + G+ V+++VV+ T A D
Sbjct: 402 YDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT--NAAGPTDR 459
Query: 495 SS-------YYYAHRGEGIETTNVLNC------NYPTVQQMILNSLRHWVTEFHIDGFCF 541
+S +YY E + C + ++I +SL W T++ IDGF F
Sbjct: 460 TSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRF 519
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 436 YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLEVVFTRTADGALQGIDD 494
Y P H+ P + + I + M++ + + G+ V+++VV+ T A D
Sbjct: 398 YDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT--NAAGPTDR 455
Query: 495 SS-------YYYAHRGEGIETTNVLNC------NYPTVQQMILNSLRHWVTEFHIDGFCF 541
+S +YY E + C + ++I +SL W T++ IDGF F
Sbjct: 456 TSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRF 515
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 436 YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLEVVFTRTADGALQGIDD 494
Y P H+ P + + I + M++ + + G+ V+++VV+ T A D
Sbjct: 396 YDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT--NAAGPTDR 453
Query: 495 SS-------YYYAHRGEGIETTNVLNC------NYPTVQQMILNSLRHWVTEFHIDGFCF 541
+S +YY E + C + ++I +SL W T++ IDGF F
Sbjct: 454 TSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRF 513
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 64/218 (29%)
Query: 378 VVYRLNVMRFSEHKSSKLPPDI-------------AGTFSGVTEKVH--HLKDLGVNAIL 422
VVY++ V RF + +S P G + G+ K++ +L D+GV AI
Sbjct: 13 VVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIW 72
Query: 423 L----EPILS-FDEQKGP-----YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANG 472
+ E + S ++ G Y+ R F P G ++ + +V HA G
Sbjct: 73 ISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFG-------TLSDFQRLVDAAHAKG 125
Query: 473 IEVLLEVVFTRTA-----------------DGALQG--IDDSSYYYAHRG--------EG 505
I+V+++ T+ +G L G +D++ Y+ H G +G
Sbjct: 126 IKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSSLEDG 185
Query: 506 IETTNV----LNCNYPTVQQMILNSLRHWVTEFHIDGF 539
I LN P + + + ++++ W+ + IDG
Sbjct: 186 IYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGI 222
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G G+ EK+ +L +LGV+ + + PI Y +++ G
Sbjct: 25 DGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFG-------T 77
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486
++ E++ + H G++V+L++V T+D
Sbjct: 78 MDDFDELLAQAHRRGLKVILDLVINHTSD 106
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 378 VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYF 437
+ Y+L + F++ D G +GVT+K+ +L LGV A+ L PI P
Sbjct: 39 ISYQLLLYSFADSDG-----DGYGDLNGVTQKLDYLNQLGVKALWLSPI-------HPCM 86
Query: 438 PRHFFSPTKLH--GPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485
H + T P G+ S + +V + H GI++ L+ V T
Sbjct: 87 SYHGYDVTDYTKVNPQLGTESDFD---RLVTEAHNRGIKIYLDYVMNHTG 133
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL--SFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
AGT GV E++ +L+ LGV + L P+L E G Y + + + R +
Sbjct: 107 AGTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRA-------VRPDLGT 159
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTA 485
++ + + + L GI ++L++V A
Sbjct: 160 MDDLSALARALRGRGISLVLDLVLNHVA 187
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G +G+ EK+ +LK LG++AI + P Y R + K +G
Sbjct: 25 DGIGDINGIIEKLDYLKALGIDAIWINPHYDSPNTDNGYDIRDYRKIMKEYG-------T 77
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ ++ ++ + ++++VV T+D
Sbjct: 78 MEDFDRLISEMKKRNMRLMIDVVINHTSD 106
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 37/138 (26%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G G+ EK+ +LK LG++AI + P H+ SP +G +
Sbjct: 39 DGIGDIRGIIEKLDYLKSLGIDAIWINP--------------HYDSPNTDNGYDISNYRQ 84
Query: 458 INSMKE---------MVKKLHANGIEVLLEVVFTRTADGA---LQGIDDSS-----YYYA 500
I MKE +V ++ + ++++VV T+D +Q D + YY+
Sbjct: 85 I--MKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFW 142
Query: 501 HRGEGIETTNVLNCNYPT 518
G+ + N NYP+
Sbjct: 143 RDGKDNQPPN----NYPS 156
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 378 VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYF 437
+ Y+L + F++ D G +GVT+K+ +L LGV A+ L PI P
Sbjct: 39 ISYQLLLYSFADSDG-----DGYGDLNGVTQKLDYLNQLGVKALWLSPI-------HPCX 86
Query: 438 PRHFFSPTKLH--GPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485
H + T P G+ S + +V + H GI++ L+ V T
Sbjct: 87 SYHGYDVTDYTKVNPQLGTESDFD---RLVTEAHNRGIKIYLDYVXNHTG 133
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 54/194 (27%)
Query: 398 DIAGTFSGVTEKVHHLKD--------LGVNAILLEPILSFDEQKGPYFPRHFFSPTKLH- 448
D G G+ EK+ +L D LGVN I L PI K P + H + T +
Sbjct: 21 DGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIF-----KSPSY--HGYDVTDYYK 73
Query: 449 -GPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA---LQGIDD--SSY--YYA 500
P G++ ++V+ H GI+V++++ T++ L+ D S Y YY
Sbjct: 74 INPDYGTLE---DFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYV 130
Query: 501 HRGEGIETTNV--------------------------LNCNYPTVQQMILNSLRHWVTEF 534
G +T LN N P VQ+ ++ ++W+ +
Sbjct: 131 WAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ- 189
Query: 535 HIDGFCFINASSLL 548
+DGF A +
Sbjct: 190 GVDGFRLDGAMHIF 203
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAIN 459
G G+ E + ++++LG+NAI PI Y ++ + G +
Sbjct: 52 GGDLWGIMEDLDYIQNLGINAIYFTPIFQ-SASNHRYHTHDYYQVDPMLGGNE------- 103
Query: 460 SMKEMVKKLHANGIEVLLEVVFTRTADG 487
+ KE++ H I+V+L+ VF ++ G
Sbjct: 104 AFKELLDAAHQRNIKVVLDGVFNHSSRG 131
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 22/92 (23%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAIN 459
G +G+ + + HL+DLGV I L PI FS T H +I+
Sbjct: 261 GGDLAGIMKHIDHLEDLGVETIYLTPI---------------FSSTSYHRYDTIDYKSID 305
Query: 460 S-------MKEMVKKLHANGIEVLLEVVFTRT 484
+++V+ LH+ I+++L++ T
Sbjct: 306 KYLGTMEDFEKLVQVLHSRKIKIVLDITMHHT 337
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL-SFDEQKGP-------YFPRHFFSPTKLHGPS 451
G GV +K+ +LK LGV I L P+L + D G Y+ R F + G
Sbjct: 48 GGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGN- 106
Query: 452 RGSISAINSMKEMVKKLHANGIEVLLEVV 480
+ +V H NGI+V+++ V
Sbjct: 107 ------WTTFDTLVNDAHQNGIKVIVDFV 129
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL---SFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456
AGT GV E+V +L++LGV + L P L + D G F+ + +G S+
Sbjct: 102 AGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGG-------FAVSD-YGQVEPSLG 153
Query: 457 AINSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ + + + +L GI + + V TAD
Sbjct: 154 SNDDLVALTSRLREAGISLCADFVLNHTAD 183
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G G+T K+ +L+ LGV AI L P+ Y ++ + + G
Sbjct: 25 DGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFG-------N 77
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ M ++ + GI++++++V T+D
Sbjct: 78 MADMDNLLTQAKMRGIKIIMDLVVNHTSD 106
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G G+T K+ +L+ LGV AI L P+ Y ++ + + G
Sbjct: 25 DGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFG-------N 77
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ M ++ + GI++++++V T+D
Sbjct: 78 MADMDNLLTQAKMRGIKIIMDLVVNHTSD 106
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL---SFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456
AGT GV E+V +L++LGV + L P L + D G F+ + +G S+
Sbjct: 102 AGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGG-------FAVSD-YGQVEPSLG 153
Query: 457 AINSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ + + + +L GI + + V TAD
Sbjct: 154 SNDDLVALTSRLREAGISLCADFVLNHTAD 183
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHF-FSPTKLHGPSRGSIS 456
D G G+ ++ +L+ LG++AI L P+ + P + S + P G+++
Sbjct: 26 DGIGDLQGIISRLDYLEKLGIDAIWLSPVY-----QSPGVDNGYDISDYEAIDPQYGTMA 80
Query: 457 AINSMKEMVKKLHANGIEVLLEVVFTRTAD 486
M E++ K + I++++++V T+D
Sbjct: 81 ---DMDELISKAKEHHIKIVMDLVVNHTSD 107
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL---SFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456
AGT GV E+V +L++LGV + L P L + D G F+ + +G ++
Sbjct: 103 AGTLRGVAERVPYLQELGVRYLHLLPFLRARAGDNDGG-------FAVSD-YGQVEPALG 154
Query: 457 AINSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ + + + +L A I + + V TAD
Sbjct: 155 SNDDLVALTARLRAANISLCADFVLNHTAD 184
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISA 457
D G G+ K+ +LK+LG++ I L P+ Y + G
Sbjct: 25 DGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFG-------T 77
Query: 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486
+ E++ ++H +++++++V T+D
Sbjct: 78 MEDWDELLHEMHERNMKLMMDLVVNHTSD 106
>pdb|3U3I|A Chain A, A Rna Binding Protein From Crimean-Congo Hemorrhagic Fever
Virus
Length = 482
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 177 TPFTPTSFDTFALELGFEAKQTPFYLSFLLKSPLRDGSGDFEI-------RNHLSAKFCV 229
TP T + F ELG + + T LL +PL+ G +E+ +N + +
Sbjct: 320 TPETFPTVSQFLFELGKQPRGTKKMKKALLSTPLKWGKKLYELFADDSFQQNRI---YMH 376
Query: 230 PVGLNAGVPSPMGLSFST 247
P L AG S MG+ F T
Sbjct: 377 PAVLTAGRISEMGVCFGT 394
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 397 PDIAGTFSGVTEKVHHLKDLGVNAILLEP----ILSFDEQKGPYFPRHFFSPTKLHGPSR 452
P+ + + HL D+G+ A+ + P + D GPY + + G R
Sbjct: 14 PNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPY-DLYDLGEFQQKGTVR 72
Query: 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485
+ +++ + LH+ ++V +VV A
Sbjct: 73 TKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKA 105
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 381 RLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRH 440
+LN +R SE K + +P D+ T + + HL + AI LE +L + + R
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNEL-----HLDHNKIQAIELEDLLRYSK-----LYRL 222
Query: 441 FFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE---------VLLEVVFTRTADGALQG 491
++ GS+S + +++E+ L N + LL+VV+ T + G
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLREL--HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 492 IDD 494
++D
Sbjct: 281 VND 283
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 507 ETTN-VLNCNYPTVQQMILNSLRHWVTEFHID 537
E+TN +L YP VQ+ L S+R T+FH+D
Sbjct: 183 ESTNAILEMQYPKVQKYCLMSVRGCYTDFHVD 214
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 397 PDIAGTFSGVTEKVHHLKDLGVNAILLEP----ILSFDEQKGPYFPRHFFSPTKLHGPSR 452
P+ + + HL D+G+ A+ + P + D GPY + + G R
Sbjct: 14 PNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPY-DLYDLGEFQQKGTVR 72
Query: 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485
+ +++ + LH+ ++V +VV A
Sbjct: 73 TKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKA 105
>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
Length = 310
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 193 FEAKQTPFYLSFLLKSPLRDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLS 244
+A P+ L+ ++ L SGD+ R L K V G+ A VP MG++
Sbjct: 226 LQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIA 277
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 354 GRLCKEPDFDWGGDVHLN---LPMEKLVVYRLN------VMRFSEHKSSKLPPDIAGTFS 404
G+L P F GG LN + + L++ +L+ VM+F K + L + S
Sbjct: 24 GQLSISPIFQ-GGSYQLNNKSIDISSLLLDKLSGESQTVVMKFKADKPNSLQALFGLSNS 82
Query: 405 GVTEKVHH----LKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRG-----SI 455
K ++ ++D G + + D QKG + F P L G +G ++
Sbjct: 83 KAGFKNNYFSIFMRDSGEIGVEIR-----DAQKGINYL--FSRPASLWGKHKGQAVENTL 135
Query: 456 SAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIE 507
++ K+ ++ NGIEV E V T + GID ++ +R EG E
Sbjct: 136 VFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNR-EGKE 186
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 354 GRLCKEPDFDWGGDVHLN---LPMEKLVVYRLN------VMRFSEHKSSKLPPDIAGTFS 404
G+L P F GG LN + + L++ +L+ VM+F K + L + S
Sbjct: 35 GQLSISPIFQ-GGSYQLNNKSIDISSLLLDKLSGESQTVVMKFKADKPNSLQALFGLSNS 93
Query: 405 GVTEKVHH----LKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRG-----SI 455
K ++ ++D G + + D QKG + F P L G +G ++
Sbjct: 94 KAGFKNNYFSIFMRDSGEIGVEIR-----DAQKGINYL--FSRPASLWGKHKGQAVENTL 146
Query: 456 SAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIE 507
++ K+ ++ NGIEV E V T + GID ++ +R EG E
Sbjct: 147 VFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNR-EGKE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,124,774
Number of Sequences: 62578
Number of extensions: 1247723
Number of successful extensions: 2864
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2756
Number of HSP's gapped (non-prelim): 110
length of query: 878
length of database: 14,973,337
effective HSP length: 107
effective length of query: 771
effective length of database: 8,277,491
effective search space: 6381945561
effective search space used: 6381945561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)