Query 047308
Match_columns 878
No_of_seqs 400 out of 2622
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1.3E-96 3E-101 879.0 62.0 605 236-872 2-687 (688)
2 PRK03705 glycogen debranching 100.0 7E-96 2E-100 866.5 57.6 589 233-873 4-657 (658)
3 COG1523 PulA Type II secretory 100.0 1.9E-92 4.1E-97 827.6 47.1 604 233-874 12-692 (697)
4 TIGR02102 pullulan_Gpos pullul 100.0 4.3E-84 9.3E-89 790.1 60.2 636 171-875 261-1006(1111)
5 PRK14510 putative bifunctional 100.0 4.4E-84 9.4E-89 809.0 54.0 562 233-823 8-648 (1221)
6 TIGR02104 pulA_typeI pullulana 100.0 9.6E-82 2.1E-86 749.2 45.3 535 236-838 7-600 (605)
7 PLN02877 alpha-amylase/limit d 100.0 2E-79 4.3E-84 733.7 47.3 591 235-874 209-969 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 3.3E-78 7.2E-83 726.2 41.8 574 239-874 126-897 (898)
9 KOG0470 1,4-alpha-glucan branc 100.0 1.8E-75 3.9E-80 664.8 39.6 691 87-874 4-753 (757)
10 PRK12568 glycogen branching en 100.0 4.3E-73 9.4E-78 668.7 51.1 549 239-874 125-729 (730)
11 PRK14706 glycogen branching en 100.0 6E-72 1.3E-76 661.4 49.5 555 239-875 25-623 (639)
12 PRK12313 glycogen branching en 100.0 4.2E-71 9.1E-76 661.8 49.8 555 239-876 25-630 (633)
13 PRK05402 glycogen branching en 100.0 1.4E-70 2.9E-75 664.6 53.0 553 239-874 118-724 (726)
14 TIGR01515 branching_enzym alph 100.0 1.6E-70 3.5E-75 652.7 46.8 548 239-872 15-613 (613)
15 PLN02447 1,4-alpha-glucan-bran 100.0 8.6E-70 1.9E-74 641.6 49.3 608 189-876 61-733 (758)
16 TIGR02402 trehalose_TreZ malto 100.0 1.4E-70 3.1E-75 643.3 41.6 465 251-818 1-540 (542)
17 PRK14705 glycogen branching en 100.0 8.8E-70 1.9E-74 667.7 47.8 545 239-874 621-1223(1224)
18 COG0296 GlgB 1,4-alpha-glucan 100.0 4.5E-65 9.8E-70 587.8 39.1 556 239-872 24-627 (628)
19 PLN02960 alpha-amylase 100.0 5.7E-60 1.2E-64 556.6 42.9 513 286-875 320-893 (897)
20 PRK10785 maltodextrin glucosid 100.0 2.1E-58 4.5E-63 547.6 42.7 485 250-833 20-580 (598)
21 TIGR02456 treS_nterm trehalose 100.0 3.7E-54 8E-59 507.3 37.5 453 373-873 2-538 (539)
22 TIGR02403 trehalose_treC alpha 100.0 1.8E-53 4E-58 500.5 35.1 424 373-872 1-542 (543)
23 PRK10933 trehalose-6-phosphate 100.0 4.8E-53 1E-57 496.4 35.9 427 373-874 7-551 (551)
24 PRK09505 malS alpha-amylase; R 100.0 1.2E-50 2.6E-55 480.4 31.5 376 372-813 185-682 (683)
25 PLN03244 alpha-amylase; Provis 100.0 4.8E-48 1E-52 447.0 41.4 488 286-875 325-868 (872)
26 PRK09441 cytoplasmic alpha-amy 100.0 1.3E-47 2.8E-52 446.3 34.1 378 401-872 19-479 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 8.5E-44 1.9E-48 389.5 13.1 275 401-721 1-314 (316)
28 PLN02784 alpha-amylase 100.0 7E-38 1.5E-42 368.2 48.5 295 375-758 497-835 (894)
29 PLN00196 alpha-amylase; Provis 100.0 3.9E-39 8.5E-44 366.2 30.2 335 399-837 39-420 (428)
30 PLN02361 alpha-amylase 100.0 2.3E-38 5E-43 355.9 30.6 283 402-758 27-345 (401)
31 COG0366 AmyA Glycosidases [Car 100.0 4.9E-37 1.1E-41 360.1 26.5 396 377-823 1-494 (505)
32 PRK13840 sucrose phosphorylase 100.0 8.7E-36 1.9E-40 340.3 30.5 374 400-821 16-475 (495)
33 TIGR03852 sucrose_gtfA sucrose 100.0 3.9E-35 8.4E-40 333.1 25.4 384 383-819 4-467 (470)
34 KOG0471 Alpha-amylase [Carbohy 100.0 3.9E-33 8.4E-38 326.8 27.9 427 373-872 14-544 (545)
35 TIGR02455 TreS_stutzeri trehal 100.0 4.6E-31 9.9E-36 301.9 32.5 448 375-876 50-684 (688)
36 TIGR02401 trehalose_TreY malto 100.0 1.3E-26 2.8E-31 276.4 34.0 81 400-487 12-93 (825)
37 PRK14511 maltooligosyl trehalo 99.9 3.2E-21 6.9E-26 231.3 33.5 81 400-487 16-97 (879)
38 smart00642 Aamy Alpha-amylase 99.9 5.1E-22 1.1E-26 199.2 10.4 94 381-486 1-97 (166)
39 KOG2212 Alpha-amylase [Carbohy 99.8 3.3E-19 7.2E-24 187.8 20.6 387 403-867 39-491 (504)
40 PF14872 GHL5: Hypothetical gl 99.8 1.6E-16 3.4E-21 179.5 34.6 278 239-546 26-392 (811)
41 cd02852 Isoamylase_N_term Isoa 99.7 9.7E-17 2.1E-21 152.4 11.7 96 242-338 1-96 (119)
42 cd02856 Glycogen_debranching_e 99.7 4.4E-16 9.6E-21 144.1 11.4 92 240-338 1-92 (103)
43 cd02860 Pullulanase_N_term Pul 99.6 5.6E-15 1.2E-19 136.0 9.6 87 241-339 1-87 (100)
44 PRK14507 putative bifunctional 99.6 5.9E-15 1.3E-19 187.5 10.6 80 400-486 754-834 (1693)
45 PF02922 CBM_48: Carbohydrate- 99.4 3.3E-13 7.1E-18 120.2 8.7 82 240-333 1-85 (85)
46 cd02853 MTHase_N_term Maltooli 99.3 5.8E-12 1.3E-16 112.4 8.3 73 242-337 1-73 (85)
47 TIGR01531 glyc_debranch glycog 99.3 4.7E-12 1E-16 156.8 8.5 86 400-488 128-214 (1464)
48 COG3280 TreY Maltooligosyl tre 99.2 8.7E-12 1.9E-16 144.0 7.1 79 402-487 17-96 (889)
49 cd02854 Glycogen_branching_enz 99.1 1.6E-10 3.6E-15 105.9 9.0 76 248-338 4-87 (99)
50 cd02855 Glycogen_branching_enz 99.0 2.5E-09 5.5E-14 99.1 9.6 84 240-338 9-97 (106)
51 cd02858 Esterase_N_term Estera 98.7 4.3E-08 9.3E-13 87.5 8.1 70 247-337 4-74 (85)
52 PF14701 hDGE_amylase: glucano 98.6 1.6E-07 3.4E-12 106.1 9.1 89 400-489 18-107 (423)
53 PF02806 Alpha-amylase_C: Alph 98.4 1E-06 2.2E-11 80.2 8.5 86 776-874 6-94 (95)
54 PF02638 DUF187: Glycosyl hydr 98.3 5E-06 1.1E-10 92.1 11.3 138 402-545 17-164 (311)
55 PRK05402 glycogen branching en 98.2 2.2E-06 4.8E-11 105.4 7.3 79 239-336 19-98 (726)
56 PF14871 GHL6: Hypothetical gl 98.2 1.7E-05 3.7E-10 76.7 11.1 119 408-542 4-131 (132)
57 cd02861 E_set_proteins_like E 98.0 2E-05 4.4E-10 69.8 8.3 66 250-337 3-70 (82)
58 cd02688 E_set E or "early" set 98.0 2.8E-05 6E-10 68.0 8.9 57 250-313 5-62 (83)
59 PF11941 DUF3459: Domain of un 97.9 2.7E-05 5.8E-10 69.8 7.2 88 747-871 1-89 (89)
60 PF11852 DUF3372: Domain of un 97.7 0.0001 2.2E-09 73.5 7.5 115 743-874 42-167 (168)
61 COG1649 Uncharacterized protei 97.6 0.0004 8.6E-09 78.7 10.9 135 400-546 60-210 (418)
62 PF02324 Glyco_hydro_70: Glyco 97.3 0.00057 1.2E-08 80.0 8.2 105 374-486 562-674 (809)
63 KOG3625 Alpha amylase [Carbohy 97.2 0.00042 9E-09 82.6 5.3 87 400-487 138-225 (1521)
64 PF02065 Melibiase: Melibiase; 97.1 0.0037 8.1E-08 71.4 12.4 135 403-547 57-195 (394)
65 cd06592 GH31_glucosidase_KIAA1 97.1 0.0035 7.6E-08 69.5 11.1 124 401-544 27-164 (303)
66 cd06593 GH31_xylosidase_YicI Y 96.9 0.0035 7.7E-08 69.5 9.8 128 401-546 21-160 (308)
67 PF13199 Glyco_hydro_66: Glyco 96.6 0.019 4.1E-07 68.2 12.5 135 402-545 116-268 (559)
68 cd06597 GH31_transferase_CtsY 96.5 0.005 1.1E-07 69.3 6.8 133 402-545 22-187 (340)
69 PF10438 Cyc-maltodext_C: Cycl 96.2 0.011 2.4E-07 51.8 5.9 72 777-873 7-78 (78)
70 cd06599 GH31_glycosidase_Aec37 96.2 0.019 4.1E-07 64.1 9.3 126 404-544 29-167 (317)
71 smart00632 Aamy_C Aamy_C domai 96.1 0.045 9.8E-07 48.3 9.4 70 778-872 7-78 (81)
72 PF13200 DUF4015: Putative gly 96.1 0.045 9.7E-07 60.6 11.4 133 400-545 9-147 (316)
73 PF02324 Glyco_hydro_70: Glyco 95.8 0.05 1.1E-06 64.4 10.8 288 509-837 143-481 (809)
74 PRK14510 putative bifunctional 95.8 0.34 7.4E-06 63.3 19.5 50 397-446 739-792 (1221)
75 cd06591 GH31_xylosidase_XylS X 95.7 0.019 4.2E-07 64.1 6.7 128 401-545 21-159 (319)
76 PLN02960 alpha-amylase 95.6 0.009 2E-07 73.3 3.9 64 233-299 113-177 (897)
77 cd06594 GH31_glucosidase_YihQ 95.6 0.022 4.8E-07 63.5 6.7 131 402-544 21-165 (317)
78 PLN02784 alpha-amylase 95.6 0.058 1.3E-06 66.2 10.5 109 106-232 275-392 (894)
79 cd02859 AMPKbeta_GBD_like AMP- 94.8 0.15 3.2E-06 44.9 8.1 64 250-336 3-67 (79)
80 PRK14507 putative bifunctional 94.7 0.14 3E-06 67.7 10.7 122 698-837 1501-1665(1693)
81 PRK14582 pgaB outer membrane N 94.7 0.31 6.7E-06 59.3 12.9 127 402-543 332-466 (671)
82 PRK10426 alpha-glucosidase; Pr 94.5 0.19 4.2E-06 61.2 10.9 131 404-546 221-364 (635)
83 PF01055 Glyco_hydro_31: Glyco 94.5 0.093 2E-06 61.2 8.0 125 402-545 41-180 (441)
84 cd06598 GH31_transferase_CtsZ 94.4 0.072 1.6E-06 59.5 6.5 128 402-544 22-163 (317)
85 cd06600 GH31_MGAM-like This fa 94.4 0.083 1.8E-06 59.0 6.8 126 401-545 21-160 (317)
86 cd06602 GH31_MGAM_SI_GAA This 94.2 0.094 2E-06 59.1 6.9 127 402-545 22-165 (339)
87 cd06604 GH31_glucosidase_II_Ma 94.2 0.2 4.3E-06 56.5 9.4 124 402-545 22-159 (339)
88 PF08533 Glyco_hydro_42C: Beta 94.1 0.11 2.5E-06 42.7 5.5 48 802-872 10-57 (58)
89 PF09154 DUF1939: Domain of un 93.5 0.22 4.8E-06 41.0 5.9 57 806-872 1-57 (57)
90 PF00150 Cellulase: Cellulase 93.1 0.53 1.1E-05 50.7 10.1 64 405-482 22-85 (281)
91 PRK10658 putative alpha-glucos 92.8 0.18 3.9E-06 61.8 6.6 84 460-545 326-418 (665)
92 cd06562 GH20_HexA_HexB-like Be 91.8 1.6 3.6E-05 49.3 12.3 129 402-537 16-151 (348)
93 cd06542 GH18_EndoS-like Endo-b 91.6 0.58 1.3E-05 50.4 8.1 62 458-542 50-111 (255)
94 PF05913 DUF871: Bacterial pro 91.2 0.36 7.7E-06 54.7 6.0 59 402-482 12-70 (357)
95 cd06595 GH31_xylosidase_XylS-l 91.1 0.44 9.6E-06 52.6 6.6 127 402-543 23-157 (292)
96 cd06603 GH31_GANC_GANAB_alpha 90.6 0.4 8.7E-06 54.1 5.8 126 401-544 21-161 (339)
97 PRK11052 malQ 4-alpha-glucanot 90.3 0.83 1.8E-05 56.2 8.6 121 458-582 354-501 (695)
98 cd06563 GH20_chitobiase-like T 90.1 3.5 7.6E-05 46.9 12.9 131 402-535 16-165 (357)
99 PF02449 Glyco_hydro_42: Beta- 89.8 1.4 3.1E-05 50.3 9.6 119 404-544 10-137 (374)
100 PLN02950 4-alpha-glucanotransf 89.4 6 0.00013 50.3 15.2 53 399-451 278-335 (909)
101 cd06564 GH20_DspB_LnbB-like Gl 89.1 2.3 5.1E-05 47.6 10.4 128 402-535 15-155 (326)
102 PRK14508 4-alpha-glucanotransf 88.7 1.4 3.1E-05 52.1 8.7 118 459-582 198-347 (497)
103 PLN03244 alpha-amylase; Provis 88.7 0.41 8.9E-06 58.4 4.1 64 233-299 116-180 (872)
104 cd06589 GH31 The enzymes of gl 88.6 2.2 4.8E-05 46.3 9.5 92 401-544 21-115 (265)
105 cd06568 GH20_SpHex_like A subg 88.6 4.7 0.0001 45.3 12.3 126 402-534 16-153 (329)
106 cd02742 GH20_hexosaminidase Be 88.6 2.9 6.3E-05 46.4 10.6 128 401-534 13-147 (303)
107 PF14488 DUF4434: Domain of un 88.5 1.9 4E-05 43.6 8.2 71 403-483 19-89 (166)
108 cd02875 GH18_chitobiase Chitob 88.2 0.92 2E-05 51.6 6.4 53 462-542 67-119 (358)
109 COG1501 Alpha-glucosidases, fa 88.0 0.87 1.9E-05 56.6 6.5 85 460-545 322-415 (772)
110 cd02857 CD_pullulan_degrading_ 87.0 2.2 4.8E-05 39.6 7.3 67 240-312 12-81 (116)
111 PF01301 Glyco_hydro_35: Glyco 86.8 0.51 1.1E-05 52.8 3.3 61 405-481 25-85 (319)
112 cd06570 GH20_chitobiase-like_1 86.7 5 0.00011 44.7 11.0 125 402-534 16-146 (311)
113 cd02871 GH18_chitinase_D-like 86.6 2.3 5.1E-05 47.3 8.4 59 458-542 59-117 (312)
114 COG3589 Uncharacterized conser 86.4 0.78 1.7E-05 50.6 4.2 58 403-482 15-72 (360)
115 PF00728 Glyco_hydro_20: Glyco 86.4 1.9 4.2E-05 48.5 7.8 135 402-541 16-162 (351)
116 cd06601 GH31_lyase_GLase GLase 86.3 1.8 4E-05 48.6 7.4 108 402-544 22-132 (332)
117 PLN02635 disproportionating en 83.9 2.3 4.9E-05 50.8 6.9 118 459-582 224-373 (538)
118 PLN02763 hydrolase, hydrolyzin 83.4 2.8 6.1E-05 53.1 7.8 122 402-543 199-334 (978)
119 cd06545 GH18_3CO4_chitinase Th 83.1 3.5 7.7E-05 44.3 7.6 61 459-542 46-106 (253)
120 COG1523 PulA Type II secretory 82.5 3.1 6.8E-05 51.0 7.5 83 235-337 61-152 (697)
121 PRK14508 4-alpha-glucanotransf 81.9 1.9 4.1E-05 51.2 5.3 54 398-451 20-74 (497)
122 COG3280 TreY Maltooligosyl tre 81.4 1.4 3E-05 53.2 3.8 88 698-789 713-816 (889)
123 cd06565 GH20_GcnA-like Glycosy 81.3 7.9 0.00017 43.0 9.6 116 402-535 15-131 (301)
124 TIGR03356 BGL beta-galactosida 79.6 11 0.00023 44.0 10.4 99 401-535 51-150 (427)
125 PLN03059 beta-galactosidase; P 79.2 3.1 6.8E-05 51.7 6.0 56 405-479 60-118 (840)
126 PF07745 Glyco_hydro_53: Glyco 78.5 4.8 0.0001 45.2 6.8 58 407-485 27-84 (332)
127 KOG1065 Maltase glucoamylase a 78.4 13 0.00028 46.0 10.7 126 400-543 307-446 (805)
128 PF03198 Glyco_hydro_72: Gluca 78.1 2.5 5.5E-05 46.6 4.3 51 405-484 54-104 (314)
129 TIGR03849 arch_ComA phosphosul 74.1 7.8 0.00017 41.3 6.5 57 399-481 59-122 (237)
130 TIGR01531 glyc_debranch glycog 73.1 1E+02 0.0022 41.1 16.9 69 506-584 473-546 (1464)
131 PF10566 Glyco_hydro_97: Glyco 71.5 40 0.00086 36.9 11.3 97 399-544 27-128 (273)
132 COG1640 MalQ 4-alpha-glucanotr 70.5 24 0.00052 41.9 10.1 24 459-482 210-233 (520)
133 PF02446 Glyco_hydro_77: 4-alp 69.2 6.8 0.00015 46.6 5.4 52 399-450 13-66 (496)
134 PRK10076 pyruvate formate lyas 69.2 13 0.00028 39.2 6.9 67 404-477 145-211 (213)
135 PF01120 Alpha_L_fucos: Alpha- 68.7 34 0.00073 38.8 10.6 117 408-545 95-216 (346)
136 PTZ00445 p36-lilke protein; Pr 68.6 14 0.0003 38.8 6.7 65 402-477 26-96 (219)
137 PLN02635 disproportionating en 68.2 7.9 0.00017 46.3 5.6 54 398-451 43-101 (538)
138 cd02874 GH18_CFLE_spore_hydrol 67.8 7.8 0.00017 43.0 5.2 64 461-542 47-110 (313)
139 PRK05628 coproporphyrinogen II 66.6 14 0.00031 42.2 7.1 85 408-541 109-194 (375)
140 PRK12568 glycogen branching en 65.8 17 0.00036 45.2 7.8 77 240-336 29-105 (730)
141 PF14883 GHL13: Hypothetical g 64.3 1E+02 0.0022 34.0 12.4 119 408-541 21-142 (294)
142 PF02679 ComA: (2R)-phospho-3- 61.7 12 0.00026 40.2 4.9 56 399-480 72-134 (244)
143 cd06546 GH18_CTS3_chitinase GH 61.0 33 0.00071 37.1 8.3 61 459-542 59-119 (256)
144 KOG0496 Beta-galactosidase [Ca 60.6 14 0.00031 44.4 5.7 58 407-481 52-110 (649)
145 PF13204 DUF4038: Protein of u 59.9 17 0.00038 40.0 6.0 71 402-483 28-110 (289)
146 TIGR01211 ELP3 histone acetylt 59.3 30 0.00065 41.4 8.2 86 408-541 207-294 (522)
147 PLN03236 4-alpha-glucanotransf 59.1 12 0.00026 46.3 5.0 52 398-449 77-133 (745)
148 PRK13384 delta-aminolevulinic 58.4 2E+02 0.0043 32.1 13.4 128 377-538 32-163 (322)
149 COG3867 Arabinogalactan endo-1 57.8 47 0.001 36.4 8.5 61 409-483 68-128 (403)
150 COG2730 BglC Endoglucanase [Ca 57.7 19 0.0004 41.8 6.0 60 407-479 76-136 (407)
151 PRK14705 glycogen branching en 57.7 23 0.00049 46.5 7.3 78 240-336 522-601 (1224)
152 PRK08208 coproporphyrinogen II 57.5 30 0.00065 40.4 7.8 85 408-541 142-227 (430)
153 TIGR00217 malQ 4-alpha-glucano 56.3 36 0.00078 40.7 8.2 116 459-579 212-359 (513)
154 PRK15452 putative protease; Pr 56.0 81 0.0018 37.1 10.9 52 458-542 45-96 (443)
155 cd06569 GH20_Sm-chitobiase-lik 55.6 37 0.0008 39.9 8.1 127 402-532 20-191 (445)
156 cd00598 GH18_chitinase-like Th 54.7 45 0.00098 34.2 7.9 61 459-542 49-111 (210)
157 PF02903 Alpha-amylase_N: Alph 54.2 37 0.00081 32.0 6.5 64 250-313 22-90 (120)
158 smart00812 Alpha_L_fucos Alpha 51.6 1.3E+02 0.0027 34.8 11.4 113 408-544 85-202 (384)
159 PRK11052 malQ 4-alpha-glucanot 51.1 23 0.00049 43.9 5.6 54 398-451 159-216 (695)
160 PRK09852 cryptic 6-phospho-bet 51.0 85 0.0018 37.2 10.1 102 401-535 68-169 (474)
161 cd00384 ALAD_PBGS Porphobilino 50.8 3.5E+02 0.0077 30.1 13.9 128 377-538 22-153 (314)
162 cd04824 eu_ALAD_PBGS_cysteine_ 48.1 1.1E+02 0.0024 33.9 9.6 131 377-538 22-157 (320)
163 PRK13210 putative L-xylulose 5 47.9 1.6E+02 0.0035 31.6 11.3 54 405-477 17-70 (284)
164 PRK09058 coproporphyrinogen II 47.8 45 0.00098 39.2 7.2 85 408-541 164-249 (449)
165 PRK05904 coproporphyrinogen II 47.3 84 0.0018 35.7 9.0 64 408-487 104-168 (353)
166 cd06547 GH85_ENGase Endo-beta- 46.9 21 0.00046 40.3 4.1 62 463-543 50-111 (339)
167 cd02877 GH18_hevamine_XipI_cla 46.9 1.1E+02 0.0024 33.6 9.7 96 412-542 19-128 (280)
168 TIGR00539 hemN_rel putative ox 46.3 59 0.0013 36.9 7.7 98 377-541 88-186 (360)
169 PRK08446 coproporphyrinogen II 45.3 63 0.0014 36.6 7.7 86 407-541 98-184 (350)
170 PLN03236 4-alpha-glucanotransf 45.3 51 0.0011 41.0 7.3 82 459-547 274-372 (745)
171 PF07071 DUF1341: Protein of u 45.1 49 0.0011 34.3 5.9 44 406-475 137-180 (218)
172 PF13380 CoA_binding_2: CoA bi 44.9 39 0.00084 31.9 5.0 42 404-477 66-107 (116)
173 PRK15014 6-phospho-beta-glucos 44.4 1.1E+02 0.0024 36.3 9.8 101 401-535 66-167 (477)
174 TIGR01370 cysRS possible cyste 43.8 68 0.0015 35.9 7.4 42 505-547 131-172 (315)
175 PLN02950 4-alpha-glucanotransf 41.5 63 0.0014 41.4 7.5 85 459-547 461-559 (909)
176 cd04823 ALAD_PBGS_aspartate_ri 41.4 5.5E+02 0.012 28.7 14.0 131 377-539 25-159 (320)
177 PRK08207 coproporphyrinogen II 41.4 79 0.0017 37.6 7.9 65 407-487 269-334 (488)
178 PRK09249 coproporphyrinogen II 41.2 88 0.0019 36.8 8.3 85 408-541 152-237 (453)
179 PF14400 Transglut_i_TM: Inact 40.5 95 0.002 31.4 7.1 66 177-258 8-76 (165)
180 PRK05660 HemN family oxidoredu 39.6 94 0.002 35.6 8.0 85 408-541 108-193 (378)
181 PF09260 DUF1966: Domain of un 39.6 1.4E+02 0.003 27.1 7.4 72 779-874 6-82 (91)
182 PRK08599 coproporphyrinogen II 39.6 69 0.0015 36.6 6.9 85 408-541 101-186 (377)
183 cd06543 GH18_PF-ChiA-like PF-C 39.0 2E+02 0.0043 31.9 10.1 93 411-542 19-111 (294)
184 PRK01060 endonuclease IV; Prov 38.1 1.6E+02 0.0036 31.7 9.3 52 404-475 12-63 (281)
185 TIGR00538 hemN oxygen-independ 36.5 1E+02 0.0022 36.2 7.9 87 407-542 151-238 (455)
186 TIGR01233 lacG 6-phospho-beta- 36.4 2E+02 0.0044 34.0 10.3 101 401-537 50-150 (467)
187 PRK09057 coproporphyrinogen II 35.6 95 0.0021 35.6 7.2 85 408-541 105-189 (380)
188 PRK13347 coproporphyrinogen II 35.4 92 0.002 36.7 7.2 86 407-541 152-238 (453)
189 PRK11145 pflA pyruvate formate 34.8 61 0.0013 34.5 5.2 64 406-476 181-245 (246)
190 PRK09283 delta-aminolevulinic 33.6 5.9E+02 0.013 28.6 12.4 129 377-539 30-162 (323)
191 TIGR01212 radical SAM protein, 33.2 1.7E+02 0.0036 32.5 8.5 52 457-541 161-212 (302)
192 PF08821 CGGC: CGGC domain; I 33.1 1.4E+02 0.003 28.0 6.5 54 403-477 51-104 (107)
193 PRK13511 6-phospho-beta-galact 33.0 2.4E+02 0.0052 33.4 10.1 68 400-484 50-117 (469)
194 PRK05799 coproporphyrinogen II 32.9 1.2E+02 0.0025 34.7 7.4 61 408-484 100-161 (374)
195 COG1306 Uncharacterized conser 32.8 2.6E+02 0.0056 31.0 9.2 120 404-545 77-219 (400)
196 smart00518 AP2Ec AP endonuclea 32.6 3.5E+02 0.0075 29.0 10.7 90 405-541 11-103 (273)
197 TIGR00433 bioB biotin syntheta 31.8 1.9E+02 0.0041 31.6 8.6 60 407-483 123-182 (296)
198 PF01212 Beta_elim_lyase: Beta 31.3 40 0.00087 37.2 3.1 24 457-480 143-166 (290)
199 TIGR03581 EF_0839 conserved hy 31.1 86 0.0019 33.0 5.2 22 406-427 137-158 (236)
200 PF02446 Glyco_hydro_77: 4-alp 30.2 46 0.001 39.6 3.6 88 458-549 191-292 (496)
201 TIGR01210 conserved hypothetic 29.8 80 0.0017 35.3 5.2 89 407-541 117-207 (313)
202 PRK07379 coproporphyrinogen II 29.3 71 0.0015 36.9 4.9 62 408-485 116-178 (400)
203 PRK14581 hmsF outer membrane N 28.7 3.8E+02 0.0083 33.3 11.0 143 378-542 315-465 (672)
204 PLN02808 alpha-galactosidase 28.4 2E+02 0.0044 33.1 8.2 59 803-874 320-384 (386)
205 cd00019 AP2Ec AP endonuclease 28.4 5.1E+02 0.011 27.9 11.2 92 404-542 10-105 (279)
206 PRK06582 coproporphyrinogen II 28.2 84 0.0018 36.2 5.2 63 408-486 112-174 (390)
207 cd03413 CbiK_C Anaerobic cobal 28.1 88 0.0019 28.9 4.3 28 406-433 44-71 (103)
208 cd05014 SIS_Kpsf KpsF-like pro 27.5 1.8E+02 0.0039 27.1 6.6 60 411-477 20-79 (128)
209 PLN02692 alpha-galactosidase 26.7 4.6E+02 0.01 30.5 10.6 61 803-875 344-410 (412)
210 PRK09589 celA 6-phospho-beta-g 26.4 3.5E+02 0.0076 32.1 10.0 68 400-484 63-131 (476)
211 PRK06294 coproporphyrinogen II 26.4 92 0.002 35.6 5.1 62 408-485 104-166 (370)
212 PF00232 Glyco_hydro_1: Glycos 25.9 2E+02 0.0043 33.9 7.9 105 402-540 56-162 (455)
213 PRK09593 arb 6-phospho-beta-gl 25.7 4.3E+02 0.0094 31.4 10.6 68 401-484 70-137 (478)
214 PRK04302 triosephosphate isome 25.7 1.1E+02 0.0024 32.2 5.2 44 410-479 78-121 (223)
215 COG2179 Predicted hydrolase of 25.7 1.8E+02 0.0039 29.6 6.2 48 410-477 20-67 (175)
216 PRK09856 fructoselysine 3-epim 24.9 1.7E+02 0.0036 31.5 6.5 51 405-476 14-64 (275)
217 cd03412 CbiK_N Anaerobic cobal 24.9 1.2E+02 0.0026 29.0 4.8 29 403-431 55-83 (127)
218 TIGR03471 HpnJ hopanoid biosyn 24.8 1.4E+02 0.0029 35.4 6.2 61 407-483 287-347 (472)
219 PRK07094 biotin synthase; Prov 24.7 1.5E+02 0.0033 32.9 6.3 62 407-484 129-190 (323)
220 PLN02849 beta-glucosidase 24.6 3.4E+02 0.0075 32.5 9.5 67 401-484 76-142 (503)
221 PF01791 DeoC: DeoC/LacD famil 24.6 62 0.0013 34.4 3.0 57 407-482 79-135 (236)
222 PF07555 NAGidase: beta-N-acet 24.5 2.1E+02 0.0045 32.0 7.2 98 402-541 13-110 (306)
223 PF00724 Oxidored_FMN: NADH:fl 24.3 2E+02 0.0043 32.5 7.2 28 457-486 78-105 (341)
224 PRK08898 coproporphyrinogen II 24.0 99 0.0022 35.6 4.8 63 408-486 123-185 (394)
225 cd04733 OYE_like_2_FMN Old yel 24.0 3.2E+02 0.0069 30.7 8.8 29 457-487 80-108 (338)
226 PRK15447 putative protease; Pr 23.7 1.8E+02 0.0039 32.2 6.6 53 400-477 14-66 (301)
227 COG3669 Alpha-L-fucosidase [Ca 23.6 6.3E+02 0.014 29.2 10.5 93 374-486 21-125 (430)
228 PF15640 Tox-MPTase4: Metallop 23.5 81 0.0018 30.2 3.1 26 454-479 17-42 (132)
229 PRK05967 cystathionine beta-ly 23.4 85 0.0018 36.3 4.0 31 453-483 160-190 (395)
230 PRK09028 cystathionine beta-ly 23.3 85 0.0018 36.3 4.1 30 453-482 157-186 (394)
231 PRK09936 hypothetical protein; 23.3 3.1E+02 0.0068 30.3 8.0 101 403-541 37-140 (296)
232 PF01373 Glyco_hydro_14: Glyco 22.9 1.2E+02 0.0025 35.1 4.9 67 400-485 12-79 (402)
233 COG1242 Predicted Fe-S oxidore 22.9 2.2E+02 0.0047 31.3 6.6 52 458-542 167-218 (312)
234 TIGR00542 hxl6Piso_put hexulos 22.9 1.4E+02 0.0031 32.3 5.5 54 404-476 16-69 (279)
235 cd06548 GH18_chitinase The GH1 22.7 94 0.002 34.7 4.2 28 515-542 105-132 (322)
236 PF07894 DUF1669: Protein of u 22.7 53 0.0012 36.0 2.1 22 459-481 137-158 (284)
237 PRK13209 L-xylulose 5-phosphat 22.6 7.3E+02 0.016 26.6 11.1 54 405-477 22-75 (283)
238 COG1874 LacA Beta-galactosidas 21.9 1.3E+02 0.0029 37.1 5.4 63 404-485 30-94 (673)
239 PF00490 ALAD: Delta-aminolevu 21.6 1.9E+02 0.0041 32.3 6.0 132 377-539 28-164 (324)
240 cd00958 DhnA Class I fructose- 21.6 1E+02 0.0022 32.5 4.0 59 401-481 73-131 (235)
241 PLN02803 beta-amylase 21.4 4.1E+02 0.0089 31.8 8.9 79 377-486 86-171 (548)
242 cd02803 OYE_like_FMN_family Ol 21.3 2.7E+02 0.0058 30.9 7.5 88 458-548 76-167 (327)
243 PF13407 Peripla_BP_4: Peripla 21.2 1.5E+02 0.0033 31.0 5.3 47 401-477 39-85 (257)
244 cd03414 CbiX_SirB_C Sirohydroc 21.2 2.1E+02 0.0045 26.5 5.6 26 406-431 47-72 (117)
245 PLN02229 alpha-galactosidase 21.1 4.2E+02 0.0092 31.0 9.0 63 402-477 81-146 (427)
246 PRK14453 chloramphenicol/florf 20.9 2.5E+02 0.0055 31.9 7.1 68 381-477 253-324 (347)
247 PLN02808 alpha-galactosidase 20.9 1.6E+02 0.0035 33.9 5.6 103 403-545 51-156 (386)
248 PRK14457 ribosomal RNA large s 20.7 2.7E+02 0.0059 31.6 7.3 68 378-477 256-324 (345)
249 PLN02998 beta-glucosidase 20.7 4E+02 0.0088 31.8 9.0 67 401-484 79-145 (497)
250 TIGR02494 PFLE_PFLC glycyl-rad 20.6 1.3E+02 0.0029 32.8 4.8 63 403-472 231-295 (295)
251 cd00945 Aldolase_Class_I Class 20.6 2.4E+02 0.0052 28.2 6.4 62 402-483 63-124 (201)
252 cd02931 ER_like_FMN Enoate red 20.6 4.9E+02 0.011 29.9 9.5 28 457-486 81-109 (382)
253 PRK05939 hypothetical protein; 20.2 1.1E+02 0.0023 35.5 4.0 29 453-481 142-170 (397)
254 PLN02814 beta-glucosidase 20.2 4.9E+02 0.011 31.2 9.6 67 401-484 74-140 (504)
255 cd02876 GH18_SI-CLP Stabilin-1 20.1 1.1E+02 0.0023 34.2 3.9 28 515-542 88-115 (318)
256 smart00636 Glyco_18 Glycosyl h 20.1 1.1E+02 0.0024 34.0 4.1 28 515-542 87-114 (334)
257 COG2200 Rtn c-di-GMP phosphodi 20.1 1.5E+02 0.0032 32.0 4.9 87 377-482 121-216 (256)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.3e-96 Score=879.02 Aligned_cols=605 Identities=34% Similarity=0.610 Sum_probs=483.0
Q ss_pred CCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcC
Q 047308 236 GVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFS 315 (878)
Q Consensus 236 g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~ 315 (878)
|.+.+|||++.++| ++|+||||+|++|+|+||++.+ ..+..+++| .++++|||+++|+++.+|.+|+|||++.+.
T Consensus 2 g~~~~LGa~~~~~g-~~F~vwap~A~~V~L~l~~~~~-~~~~~~~~m---~~~~~gvW~~~v~~~~~g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 2 GMPFPLGATWDGQG-VNFALFSANAEKVELCLFDAQG-EKEEARLPL---PERTDDIWHGYLPGAQPGQLYGYRVHGPYD 76 (688)
T ss_pred CCCcCCCeEEeCCc-EEEEEECCCCCEEEEEEEcCCC-CceeeEEec---ccCCCCEEEEEECCCCCCCEEEEEEeeeeC
Confidence 67889999999887 9999999999999999997643 233345555 467889999999999999999999998777
Q ss_pred CCCCCccccceeecCccccccccCCCCCCCC------------------CCCCCcccccccCCCCCCCCC-CCCCCCCCC
Q 047308 316 QGDGYKSHLESVLLDPYAKIIVNSIPNHHDL------------------GLPPKYLGRLCKEPDFDWGGD-VHLNLPMEK 376 (878)
Q Consensus 316 ~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~------------------~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~d 376 (878)
|..|.++++.+.++||||+++........+. ..+....+.+++ +.|+|+++ ..|..+|++
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d-~~~~w~~~~~~p~~~~~d 155 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD-PDFDWGGDEQRPRTPWED 155 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC-CCCCCCCcccCCCCCccc
Confidence 8889899899999999999997431100000 000001223333 46999987 566778999
Q ss_pred cEEEEEecccccCCCCCCCCCCCCCCHHHHHHH--HHHHHhcCCCeEEEccCcccCCC----------CCCCCCCCCCCc
Q 047308 377 LVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEK--VHHLKDLGVNAILLEPILSFDEQ----------KGPYFPRHFFSP 444 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~k--LdyLk~LGvt~I~L~PI~~~~~~----------~~gY~~~~yfa~ 444 (878)
+|||||||++|+..+ ++++...+|||+||+++ |||||+|||||||||||+++... .|||+|.+||+|
T Consensus 156 ~iIYE~hvr~Ft~~~-~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~ 234 (688)
T TIGR02100 156 TIIYEAHVKGFTQLH-PDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAP 234 (688)
T ss_pred cEEEEEEhHHhcCCC-CCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccccc
Confidence 999999999999864 44555678999999996 99999999999999999998542 379999999999
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC-------cCCCCCCCCCccccCC------CCCCcccc
Q 047308 445 TKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGIDDSSYYYAHRG------EGIETTNV 511 (878)
Q Consensus 445 d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-------~~~~~d~~~yY~~~~~------~~~~~~~d 511 (878)
+++||+. ++++|||+||++||++||+|||||||||++.+ ++.++++..||..+.. +.++++++
T Consensus 235 d~~y~~~----g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ 310 (688)
T TIGR02100 235 EPRYLAS----GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNT 310 (688)
T ss_pred ChhhcCC----CCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccc
Confidence 9999874 37899999999999999999999999999974 3556666667754431 24678899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCCC
Q 047308 512 LNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDT 591 (878)
Q Consensus 512 ln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~~ 591 (878)
||+++|+||++|+++++||++||||||||||++..+.++..+ +....+++++++.++++++++||||+|+.........
T Consensus 311 ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~-~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~~ 389 (688)
T TIGR02100 311 LNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYG-FDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQVG 389 (688)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCC-CcccHHHHHHHHhCcccCCeEEEEeeecCCCCccccc
Confidence 999999999999999999999999999999999988765322 1223468889988899999999999999653322223
Q ss_pred CCCcccchhhhhhHHHHHHHHHHhcC-CcHHHHHHHHcCCCcccCC-CCCCceeeeeeccCCCCCccccccccC------
Q 047308 592 RFPHWKRWAELNTNFCNDVRNFFRGE-GLLSDLATRLCGSGDIFSD-GRGPAFSFNYIARNTGLPLVDLVSFSG------ 663 (878)
Q Consensus 592 ~~~~~~~~~~~n~~f~d~ir~~l~g~-~~~~~~~~~l~~s~~~f~~-~~~~~~~inyi~~HD~~tL~D~v~~~~------ 663 (878)
.|+. .|++||+.|++.+|.|++|. +...+++.+++++.++|.. .+.+..+||||++||++||+|+++++.
T Consensus 390 ~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~n 467 (688)
T TIGR02100 390 NFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEAN 467 (688)
T ss_pred CCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhc
Confidence 4542 57999999999999999997 4678899999999888863 246888999999999999999998743
Q ss_pred -----CCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCCCC---CCCCcc
Q 047308 664 -----GGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYADR---KPFDWN 734 (878)
Q Consensus 664 -----~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~~r---~~~~W~ 734 (878)
++...|+|||||.+|++.+..+.+.|.+++|++++++||+||+||||||||+|+++.|+ |+|+++ ++|+|+
T Consensus 468 ge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~ 547 (688)
T TIGR02100 468 GENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWS 547 (688)
T ss_pred cccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCcc
Confidence 35567899999999999998888889999999999999999999999999999999765 788764 678998
Q ss_pred ccccCCCccHHHHHHHHHHHHhhc--------c---------CCccc---cCCCCCCCCccCCCCcEEEEEEeccccccc
Q 047308 735 ALATGFGIQITEFISFLSSFRLKR--------K---------ENIDW---HGSDHSPPRWEDPDCKFLAMRLKVDKAESQ 794 (878)
Q Consensus 735 ~~~~~~~~~l~~f~k~Li~LRk~~--------~---------~~i~~---~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~ 794 (878)
... ..+++++|+|.||+|||++ . ++++| +|.....++|.++..++|+|.+.+....+
T Consensus 548 ~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~- 624 (688)
T TIGR02100 548 LDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGG- 624 (688)
T ss_pred ccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCC-
Confidence 643 3578999999999999998 1 24667 45555677887656799999997632100
Q ss_pred ccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 795 LSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 795 ~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
.....+.++|++|++.+.+++.||..+ ..|++++||....+... . ......+.|+|+|++||+
T Consensus 625 ----~~~~~~~~~v~~N~~~~~~~~~lP~~~--~~w~~~~dt~~~~~~~~--------~-~~~~~~~~v~~~s~~vl~ 687 (688)
T TIGR02100 625 ----DPGADDSLLLLLNAGPEPVPFKLPGGG--GRWELVLDTADEEAPGI--------H-LDAGQEAELPARSVLLLR 687 (688)
T ss_pred ----CCCCCCeEEEEECCCCCCeEEECCCCC--CcEEEEecCCCCCCccc--------c-ccCCCEEEEcCCEEEEEe
Confidence 001236799999999999999999743 58999999975332111 0 111346899999999986
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=7e-96 Score=866.49 Aligned_cols=589 Identities=31% Similarity=0.524 Sum_probs=472.4
Q ss_pred CCCCCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECC
Q 047308 233 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKG 312 (878)
Q Consensus 233 ~~~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~ 312 (878)
+..|.+.||||++.++| |+|+||||+|++|+|++|++.+.. .+++| .++++|+|++.|+++.+|..|.|||++
T Consensus 4 ~~~g~~~pLGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~~~~---~~~~m---~~~~~gvW~~~v~~~~~G~~Y~yrv~g 76 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQG-VNFTLFSAHAERVELCVFDENGQE---QRYDL---PARSGDIWHGYLPGARPGLRYGYRVHG 76 (658)
T ss_pred cCCCCCCCcceEEeCCC-EEEEEECCCCCEEEEEEEcCCCCe---eeEee---eeccCCEEEEEECCCCCCCEEEEEEcc
Confidence 35788899999999887 999999999999999999764321 24555 456889999999999999999999998
Q ss_pred CcCCCCCCccccceeecCccccccccCCCCC---CCC-C----CCC--CcccccccCCCCCCCCCCCCCCCCCCcEEEEE
Q 047308 313 SFSQGDGYKSHLESVLLDPYAKIIVNSIPNH---HDL-G----LPP--KYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRL 382 (878)
Q Consensus 313 ~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~---~g~-~----~~~--~~~~~~~~~~~~~W~~~~~~~~~~~d~VIYev 382 (878)
.+.|+.|.++++.+.++||||+++....... .+. . .+. ....+++..+.|+|+++.+|..+|+++||||+
T Consensus 77 ~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 77 PWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDDHYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecCCCCCCCCCCCCCCccccEEEEE
Confidence 7778889999999999999999997421000 000 0 000 01123333456999999888889999999999
Q ss_pred ecccccCCCCCCCCCCCCCCHHHHHHH--HHHHHhcCCCeEEEccCcccCC----------CCCCCCCCCCCCccCCCCC
Q 047308 383 NVMRFSEHKSSKLPPDIAGTFSGVTEK--VHHLKDLGVNAILLEPILSFDE----------QKGPYFPRHFFSPTKLHGP 450 (878)
Q Consensus 383 hv~~Ft~~~~s~~~~~~~Gt~~gi~~k--LdyLk~LGvt~I~L~PI~~~~~----------~~~gY~~~~yfa~d~~yGt 450 (878)
||++||..++ ..+...+|||+|++++ |||||+||||+||||||+++.+ ..|||+|.+||+|+++||+
T Consensus 157 hvr~ft~~~~-~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt 235 (658)
T PRK03705 157 HVRGLTYLHP-EIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYAS 235 (658)
T ss_pred ehhhhcccCC-CCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCC
Confidence 9999997532 3334578999999974 9999999999999999999853 3479999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC-------cCCCCCCCCCccccCC----CCCCcccccCCCCHHH
Q 047308 451 SRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGIDDSSYYYAHRG----EGIETTNVLNCNYPTV 519 (878)
Q Consensus 451 ~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-------~~~~~d~~~yY~~~~~----~~~~~~~dln~~~p~V 519 (878)
+.+ .+++|||+||++||++||+||||||||||+.. .+.+++++.||+.+.. +..+++++||+++|+|
T Consensus 236 ~~~--~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~V 313 (658)
T PRK03705 236 GPE--TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAV 313 (658)
T ss_pred CCc--chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHH
Confidence 633 57899999999999999999999999999973 3556677777765432 2356789999999999
Q ss_pred HHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCCCCCCcccch
Q 047308 520 QQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRW 599 (878)
Q Consensus 520 r~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~ 599 (878)
|++|+++++||++||||||||||+|.++.++. .+....+++++++.+|++++++||||+|+..........++. .|
T Consensus 314 r~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~--~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~~~~~~~g~~~~--~~ 389 (658)
T PRK03705 314 VDWAIDCLRYWVETCHVDGFRFDLATVLGRTP--EFRQDAPLFTAIQNDPVLSQVKLIAEPWDIGPGGYQVGNFPP--PF 389 (658)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCc--ccchhhHHHHHHhhCccccceEEEEecccCCCChhhhcCCCc--ce
Confidence 99999999999999999999999999887542 222335578899989999999999999997543333334542 58
Q ss_pred hhhhhHHHHHHHHHHhcC-CcHHHHHHHHcCCCcccC-CCCCCceeeeeeccCCCCCccccccccC-----------CCC
Q 047308 600 AELNTNFCNDVRNFFRGE-GLLSDLATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLVSFSG-----------GGL 666 (878)
Q Consensus 600 ~~~n~~f~d~ir~~l~g~-~~~~~~~~~l~~s~~~f~-~~~~~~~~inyi~~HD~~tL~D~v~~~~-----------~~~ 666 (878)
++||+.|++.+|.|+.+. +...+++.++.++.++|. .++.|..+||||++||++||+|+++++. ++.
T Consensus 390 ~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~ 469 (658)
T PRK03705 390 AEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGT 469 (658)
T ss_pred EEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhccchhhccccccccc
Confidence 999999999999998764 567889999999988886 3467999999999999999999998875 334
Q ss_pred CCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCCCC---CCCCccccccCCCc
Q 047308 667 ASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYADR---KPFDWNALATGFGI 742 (878)
Q Consensus 667 ~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~~r---~~~~W~~~~~~~~~ 742 (878)
..++|||||.+|++.+..+.+.|.+++|+++++||++||+||||||||+|+++.|+ |+|++. ++|+|+.. .+
T Consensus 470 ~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~----~~ 545 (658)
T PRK03705 470 NNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQA----DR 545 (658)
T ss_pred ccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCccccccchh----hh
Confidence 56789999999999999999999999999999999999999999999999999885 789875 56788754 26
Q ss_pred cHHHHHHHHHHHHhhc------------cCCccccCCC---CCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEE
Q 047308 743 QITEFISFLSSFRLKR------------KENIDWHGSD---HSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLY 807 (878)
Q Consensus 743 ~l~~f~k~Li~LRk~~------------~~~i~~~g~~---~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~ll 807 (878)
++++|+|.||+|||++ ..++.|+..+ ....+|.+. .++++|... +.++
T Consensus 546 ~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~-~~~~~~~~~----------------~~~~ 608 (658)
T PRK03705 546 GLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQG-PKQLQILLS----------------DRWL 608 (658)
T ss_pred HHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCc-ceEEEEEEC----------------CCEE
Confidence 8999999999999998 1235554333 345667543 567777763 3599
Q ss_pred EEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEE
Q 047308 808 IACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEA 873 (878)
Q Consensus 808 Vv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~ 873 (878)
|++|.+.++++++||. +.|+++++++... . + .....+.+|++|++||..
T Consensus 609 v~~N~~~~~~~~~lp~----~~w~~~~~~~~~~--~-----~------~~~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 609 IAINATLEVTEIVLPE----GEWHAIPPFAGED--N-----P------VITAVWHGPAHGVCVFQR 657 (658)
T ss_pred EEECCCCCCeEEECCC----cceEEEEccCCCc--c-----c------ccCceeeecCcEEEEEec
Confidence 9999999999999985 3799996554311 0 0 112357799999999874
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-92 Score=827.62 Aligned_cols=604 Identities=35% Similarity=0.602 Sum_probs=506.2
Q ss_pred CCCCCCCCCceEEec---CCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEE
Q 047308 233 LNAGVPSPMGLSFST---DGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYR 309 (878)
Q Consensus 233 ~~~g~~~~lGa~~~~---~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~ 309 (878)
+..|.+.|||+++.. +| ++|++|+.+|++|.||+|+.....++...+ ++..+.|.+|++.+|++..+..|.||
T Consensus 12 ~~~g~~~plga~~~~~~~~g-~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~---~~~~~~G~iw~~~~p~~~~g~~y~yr 87 (697)
T COG1523 12 LQPGKPYPLGATVIDIDGDG-VNFALFSSHAERVELCLFDEAGNTEEGRLY---PYDGELGAIWHLWLPGAKPGQVYGYR 87 (697)
T ss_pred eccCCcccccceeeeccCcc-eEEeeeccccceEEEEecCccccccccccc---ccCCccccEEEEEcCCCceeeEEEEe
Confidence 357888999999844 66 999999999999999999765443332123 34467788999999999999999999
Q ss_pred ECCCcCCCCCCccccceeecCccccccccCCC-C---CCCCC-------------CCCCcccccccCCCCCCCCCCCCCC
Q 047308 310 FKGSFSQGDGYKSHLESVLLDPYAKIIVNSIP-N---HHDLG-------------LPPKYLGRLCKEPDFDWGGDVHLNL 372 (878)
Q Consensus 310 i~~~~~~~~g~~~~~~~~~~DPyA~~~~~~~~-~---~~g~~-------------~~~~~~~~~~~~~~~~W~~~~~~~~ 372 (878)
+.+.+.|..|.++++.+..+||||+++..... . ..+.. .......+++..+.|+|+.+.+|..
T Consensus 88 ~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~~~~~~ 167 (697)
T COG1523 88 VHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWENDKPPRI 167 (697)
T ss_pred cCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccCCCCCC
Confidence 99988889999999999999999999974321 0 00000 0011223444445599999988888
Q ss_pred CCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHH--HHHHHhcCCCeEEEccCcccCC----------CCCCCCCCC
Q 047308 373 PMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEK--VHHLKDLGVNAILLEPILSFDE----------QKGPYFPRH 440 (878)
Q Consensus 373 ~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~k--LdyLk~LGvt~I~L~PI~~~~~----------~~~gY~~~~ 440 (878)
||+++||||+|||+||. ..++++...+|||.|++++ |+|||+||||||+||||+++.. +.|||+|.+
T Consensus 168 p~~~~vIYE~HVr~fT~-~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~ 246 (697)
T COG1523 168 PWEDTVIYEAHVRDFTQ-LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLN 246 (697)
T ss_pred CccceEEEEeeeccccc-CCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCccc
Confidence 99999999999999997 5578888899999999999 9999999999999999998742 357999999
Q ss_pred CCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC-------cCCCCCCCCCccccCC----CCCCcc
Q 047308 441 FFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGIDDSSYYYAHRG----EGIETT 509 (878)
Q Consensus 441 yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-------~~~~~d~~~yY~~~~~----~~~~~~ 509 (878)
||+|+++|.+.+.|..++.|||.||+++|++||+||||||||||+++ +|+++++..||..++. ++++||
T Consensus 247 fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcG 326 (697)
T COG1523 247 FFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCG 326 (697)
T ss_pred ccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccC
Confidence 99999999998779999999999999999999999999999999863 7899998778776653 467899
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCC
Q 047308 510 NVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPK 589 (878)
Q Consensus 510 ~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~ 589 (878)
+.||++|||||++|+|+|+||++||||||||||.+..+.++.. ....++++..++..+|++...++|||+|+.+....+
T Consensus 327 Ntln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~-~~~~~~~l~~~~~~~p~l~~~kliAepwD~g~~gyq 405 (697)
T COG1523 327 NTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM-LFDINANLFLAGEGDPVLSGVKLIAEPWDIGPGGYQ 405 (697)
T ss_pred cccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccc-ccccCcchhhhccCCccccCceeeecchhhcCCCcc
Confidence 9999999999999999999999999999999999998887765 234456788889999999999999999997765555
Q ss_pred CCCCCcccchhhhhhHHHHHHHHHHhcC-CcHHHHHHHHcCCCcccC-CCCCCceeeeeeccCCCCCccccccccC----
Q 047308 590 DTRFPHWKRWAELNTNFCNDVRNFFRGE-GLLSDLATRLCGSGDIFS-DGRGPAFSFNYIARNTGLPLVDLVSFSG---- 663 (878)
Q Consensus 590 ~~~~~~~~~~~~~n~~f~d~ir~~l~g~-~~~~~~~~~l~~s~~~f~-~~~~~~~~inyi~~HD~~tL~D~v~~~~---- 663 (878)
...||...+|++||..|++.+|.|++|+ +....++.++.++.++|. .++.|..+||||++||++||+|+++|++
T Consensus 406 vG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khne 485 (697)
T COG1523 406 VGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNE 485 (697)
T ss_pred cccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhccCCCh
Confidence 5678866789999999999999999997 477899999999998887 4588999999999999999999999987
Q ss_pred -------CCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCCCCC---CCC
Q 047308 664 -------GGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYADRK---PFD 732 (878)
Q Consensus 664 -------~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~~r~---~~~ 732 (878)
++...+.+||+|.+|++.++.+...|.++.+++++.+|+++|+|||-+|||+|+++.|+ |+||+.+ +++
T Consensus 486 ange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlD 565 (697)
T COG1523 486 ANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLD 565 (697)
T ss_pred hhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcccccccccccccccccccccCCcccceec
Confidence 33445679999999999999999999999999999999999999999999999999996 7998765 566
Q ss_pred ccccccCCCccHHHHHHHHHHHHhhc---------c-----CCccc---cCCCCCCCCccCCCCcEEEEEEecccccccc
Q 047308 733 WNALATGFGIQITEFISFLSSFRLKR---------K-----ENIDW---HGSDHSPPRWEDPDCKFLAMRLKVDKAESQL 795 (878)
Q Consensus 733 W~~~~~~~~~~l~~f~k~Li~LRk~~---------~-----~~i~~---~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~ 795 (878)
|+. ..++.+++|+++||+|||++ . .++.| ++...+..+|.+.....+++...+.
T Consensus 566 W~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~------ 636 (697)
T COG1523 566 WST---EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGD------ 636 (697)
T ss_pred cCc---cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCC------
Confidence 662 34589999999999999998 1 35554 3444567788877678888888652
Q ss_pred cccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 796 SSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 796 ~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
..+++|++|...+...+.||... ++|..++++....+ . ...++.++++|++||...
T Consensus 637 -------~~~~lv~~N~~~~~~~~~lp~~~--~~~~~~~~~~~~~~-------~-------~~~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 637 -------KERLLVLINATAEPVEFELPEDE--GKWAGLVDTSTPPG-------F-------DIREVSLPGRSVLVLTRR 692 (697)
T ss_pred -------CccEEEEecCCccccceeccccc--CcceeeecccCCCC-------c-------ccceeecCCcEEEEEeec
Confidence 57899999999999999999854 57999999886321 0 011688999999999853
No 4
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4.3e-84 Score=790.10 Aligned_cols=636 Identities=19% Similarity=0.284 Sum_probs=448.3
Q ss_pred CCCceeeceeeCC-CCeEEEEEeecCCCCCeEEEEeeccccCCCCCcchhhccccCcccccccCCCCCCCCCceEEecCC
Q 047308 171 KTGSIETPFTPTS-FDTFALELGFEAKQTPFYLSFLLKSPLRDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLSFSTDG 249 (878)
Q Consensus 171 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~~~g 249 (878)
|+.+.+|.++++. ..+++++.+|+.+++||+|+|..+...+ ..++++.+. .+.|+++|||++.++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~-----------~y~y~g~LGa~~~~~g 327 (1111)
T TIGR02102 261 GNTVDITDVTIDTDKKTVTVKGDFNLDKSPYTVSYNEVSVPT--KQSWRLKDE-----------MYAYDGKLGAQLHEDG 327 (1111)
T ss_pred CceeecceeeecCCcceEEeeccCCcccCCEEEEeccccchh--hcchhhhhh-----------hhccCCCCCCEEecCC
Confidence 4566778887764 5899999999999999999998765543 345554431 2456789999999887
Q ss_pred eEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcC------CCCCceeEEEECCCcCCCCCCccc
Q 047308 250 SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES------TWNFVSYGYRFKGSFSQGDGYKSH 323 (878)
Q Consensus 250 ~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~------~~~g~~Y~y~i~~~~~~~~g~~~~ 323 (878)
+++|+||||+|++|+|++|+..+......+++| .++.+|||++++++ ...|.+|.|+|.+. +
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m---~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~-----~---- 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVEL---KKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRG-----G---- 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEec---ccCCCCEEEEEECCcccCcccCCCceEEEEEECC-----C----
Confidence 789999999999999999976544333346666 45788999999985 34789999999864 1
Q ss_pred cceeecCccccccccCCC-CCCCCCCCCCcccccccC-----CCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCCC
Q 047308 324 LESVLLDPYAKIIVNSIP-NHHDLGLPPKYLGRLCKE-----PDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPP 397 (878)
Q Consensus 324 ~~~~~~DPyA~~~~~~~~-~~~g~~~~~~~~~~~~~~-----~~~~W~~~~~~~~~~~d~VIYevhv~~Ft~~~~s~~~~ 397 (878)
....++||||+++..... ..++.. ....+.+++. ..++|.+ .++..+++++||||+|||+|+.+.+++...
T Consensus 396 ~~~~~~DPYA~al~~~n~~~~~~~~--~~~ks~vvD~~~~~p~~~~~~~-~~~~~~~~d~vIYElHVrdFt~d~~~~~~~ 472 (1111)
T TIGR02102 396 DKVLALDPYAKSLAAWNDATSDDQI--KVAKAAFVDPSSLGPQELDFAK-IENFKKREDAIIYEAHVRDFTSDPAIAGDL 472 (1111)
T ss_pred ceEEEeChhheEEeccCcccccccC--CCCceEEEcCcccCcccccccc-ccccCCccceEEEEEechhhCcCCCCCccc
Confidence 257899999999873110 001100 0111222222 2467764 334446899999999999999765433211
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCCeEEEccCcccC-------------------CCCCCCCCCCCCCccCCCCCC-CCCcc
Q 047308 398 -DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFD-------------------EQKGPYFPRHFFSPTKLHGPS-RGSIS 456 (878)
Q Consensus 398 -~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~-------------------~~~~gY~~~~yfa~d~~yGt~-~~~~~ 456 (878)
..+|||+||+++|+|||+||||||||||||++. ...|||+|.+||+|+++||++ .+|..
T Consensus 473 ~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ 552 (1111)
T TIGR02102 473 TAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPEL 552 (1111)
T ss_pred ccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccc
Confidence 257999999999999999999999999999741 123899999999999999985 46778
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccCCCC-cCCCCCCCCCccccCCCC----CCcccccCCCCHHHHHHHHHHHHHHH
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVVFTRTADG-ALQGIDDSSYYYAHRGEG----IETTNVLNCNYPTVQQMILNSLRHWV 531 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-~~~~~d~~~yY~~~~~~~----~~~~~dln~~~p~Vr~~iid~l~~Wl 531 (878)
+++|||+||++||++||+|||||||||++.. .|..+++ .||++....+ ..+++++|++|+|||++|+|+++||+
T Consensus 553 ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p-~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv 631 (1111)
T TIGR02102 553 RIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEP-NYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLV 631 (1111)
T ss_pred cHHHHHHHHHHHHHCCCEEEEecccccccccccccccCC-CceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999984 5666654 5665432111 23468999999999999999999999
Q ss_pred HhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCC---CCCCCCCCcccchhhhhhHHHH
Q 047308 532 TEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGV---APKDTRFPHWKRWAELNTNFCN 608 (878)
Q Consensus 532 ~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~---~~~~~~~~~~~~~~~~n~~f~d 608 (878)
+||||||||||++.++...++.. ...++ +...++++||||+|+.... .........+..+......|++
T Consensus 632 ~ey~VDGFRfDl~g~~d~~~~~~------~~~~l--~~~dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD 703 (1111)
T TIGR02102 632 DEFKVDGFRFDMMGDHDAASIEI------AYKEA--KAINPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSD 703 (1111)
T ss_pred HhcCCcEEEEeccccCCHHHHHH------HHHHH--HHhCcCEEEEEecccccCCCCcccccccchhhHhcCCcccEecH
Confidence 99999999999887654443321 11221 2223589999999996211 1111111222223323367788
Q ss_pred HHHHHHhcCC--------------cHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccC
Q 047308 609 DVRNFFRGEG--------------LLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNC 674 (878)
Q Consensus 609 ~ir~~l~g~~--------------~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~ 674 (878)
.+|++++|.. .+..+...+.++...|.. ..|..+||||+|||++||+|+++++......
T Consensus 704 ~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~-~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~------ 776 (1111)
T TIGR02102 704 DIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEA-DSPGDVVQYIAAHDNLTLHDVIAQSIKKDPK------ 776 (1111)
T ss_pred HHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccccc-CCcccEEEEEecCCCCchHhhhhhccccCcc------
Confidence 8888888531 234566777776655532 4689999999999999999999887522100
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCC---------------------------
Q 047308 675 GEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYA--------------------------- 726 (878)
Q Consensus 675 g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~--------------------------- 726 (878)
..++. ....++.|++++++||+|||||||+||||++++.++ |+||
T Consensus 777 ----~~e~~---~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1111)
T TIGR02102 777 ----VAENQ---EEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPY 849 (1111)
T ss_pred ----cccch---HHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccc
Confidence 00111 122456778889999999999999999999999875 3333
Q ss_pred ----------CCCCCCccccccC----CCccHHHHHHHHHHHHhhc-----------cCCccccCCCCCCCCccCCCCcE
Q 047308 727 ----------DRKPFDWNALATG----FGIQITEFISFLSSFRLKR-----------KENIDWHGSDHSPPRWEDPDCKF 781 (878)
Q Consensus 727 ----------~r~~~~W~~~~~~----~~~~l~~f~k~Li~LRk~~-----------~~~i~~~g~~~~~~~~~~~~~~v 781 (878)
..|+++|++.... ....+++|+|.||+|||++ ...+.|+...+. .+|.. ...+
T Consensus 850 ~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~-~~~~~-~~~~ 927 (1111)
T TIGR02102 850 FIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQ-NEIEE-EDLV 927 (1111)
T ss_pred cccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCCCC-ccccc-CCcE
Confidence 3567889876431 1257999999999999998 123444332221 23433 3589
Q ss_pred EEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCC-CCCCeEEEEccCCCCCCCCccCCCCceeeecCceEE
Q 047308 782 LAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPP-PEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYT 860 (878)
Q Consensus 782 laf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~-~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~ 860 (878)
++|...+. ..+.++|++|.+.+++++.||.. +....|.+++|........+.. ... +.. ....
T Consensus 928 ia~~~~~~------------~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~~~~g~~~~~~-~~~-~~~--~~~~ 991 (1111)
T TIGR02102 928 VAYQIVAT------------NGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDAEQAGVTGIAE-PKG-VEL--TAEG 991 (1111)
T ss_pred EEEEEecC------------CCCeEEEEECCCCCCEEEECCCCcccccceEEEEcccccCcccccc-ccc-ccc--cCCe
Confidence 99998653 23579999999999999999973 3345799999976432100110 000 001 1236
Q ss_pred EEEcCcEEEEEEEcc
Q 047308 861 YEMKPYSCTLFEASN 875 (878)
Q Consensus 861 ~~vp~~S~~Vl~~~~ 875 (878)
++|||+|++||....
T Consensus 992 ~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 992 LKLDPLTAAVVRVGG 1006 (1111)
T ss_pred EEEcCcEEEEEEecc
Confidence 899999999998763
No 5
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.4e-84 Score=809.02 Aligned_cols=562 Identities=29% Similarity=0.494 Sum_probs=454.9
Q ss_pred CCCCCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECC
Q 047308 233 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKG 312 (878)
Q Consensus 233 ~~~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~ 312 (878)
...|++.||||++.++| |+|+||||+|++|+||+|++++.. +..+++| ..+++|||++.|++...|..|+|++++
T Consensus 8 ~~~g~~~plGA~~~~~g-v~F~v~ap~A~~V~L~lf~~~~~~-~~~~~~l---~~~~g~vW~~~i~~~~~g~~Ygyrv~g 82 (1221)
T PRK14510 8 VSPGFREPLGAVPDGGG-VNLALFSGAAERVEFCLFDLWGVR-EEARIKL---PGRTGDVWHGFIVGVGPGARYGNRQEG 82 (1221)
T ss_pred cCCCCCCCCceEEECCe-EEEEEECCCCCEEEEEEEECCCCC-eeEEEEC---CCCcCCEEEEEEccCCCCcEEEEEecc
Confidence 45789999999999887 999999999999999999875432 2335655 357899999999999999999999998
Q ss_pred CcCCCCCCccccceeecCccccccccCCCCCCCCCC-----------CC--CcccccccCCCCCCCCCCCCCCCCCCcEE
Q 047308 313 SFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGL-----------PP--KYLGRLCKEPDFDWGGDVHLNLPMEKLVV 379 (878)
Q Consensus 313 ~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~-----------~~--~~~~~~~~~~~~~W~~~~~~~~~~~d~VI 379 (878)
...++.|.++++.+.++||||+++........++.. +. ....+++.. .|+|.++.++..+|+++||
T Consensus 83 ~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~-~~~W~~~~~~~~~~~d~vI 161 (1221)
T PRK14510 83 PGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPT-PFTWAPRSPLHGDWDDSPL 161 (1221)
T ss_pred CCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeec-ccccCCCCCCCCCcccCeE
Confidence 877788999999999999999999742210011000 00 011122223 6999998888889999999
Q ss_pred EEEecccccCCCCCCCCCCCCCCHHHHH--HHHHHHHhcCCCeEEEccCcccCCC----------CCCCCCCCCCCccCC
Q 047308 380 YRLNVMRFSEHKSSKLPPDIAGTFSGVT--EKVHHLKDLGVNAILLEPILSFDEQ----------KGPYFPRHFFSPTKL 447 (878)
Q Consensus 380 Yevhv~~Ft~~~~s~~~~~~~Gt~~gi~--~kLdyLk~LGvt~I~L~PI~~~~~~----------~~gY~~~~yfa~d~~ 447 (878)
||+||++||... +..+.+.+|+|++|. ++|+|||+||||+||||||+++... .|||++.+||+|+++
T Consensus 162 YE~hvr~ft~~~-~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~ 240 (1221)
T PRK14510 162 YEMNVRGFTLRH-DFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPR 240 (1221)
T ss_pred EEEccchhhccC-CCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChh
Confidence 999999999743 233445789999999 6799999999999999999998543 368999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC-------cCCCCCCCCCccccC------CCCCCcccccCC
Q 047308 448 HGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGIDDSSYYYAHR------GEGIETTNVLNC 514 (878)
Q Consensus 448 yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-------~~~~~d~~~yY~~~~------~~~~~~~~dln~ 514 (878)
||+. +++|||+||++||++||+||||||||||+.+ ++.++++..||..++ .+.+++++.+|+
T Consensus 241 yg~~-----~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~ 315 (1221)
T PRK14510 241 LAPG-----GEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNL 315 (1221)
T ss_pred hccC-----cHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCcccc
Confidence 9953 5699999999999999999999999999985 345667777876542 134677888999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEccCccc---ccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCCC
Q 047308 515 NYPTVQQMILNSLRHWVTEFHIDGFCFINASSL---LRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDT 591 (878)
Q Consensus 515 ~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l---~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~~ 591 (878)
++|+|+++|+++++||++ |||||||||+|.++ ..+++.. ..+.++++..++++.+++||||+|+.........
T Consensus 316 ~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~---~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~~~g 391 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDE---FRQFLKAMDQDPVLRRLKMIAEVWDDGLGGYQYG 391 (1221)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHH---HHHHHHHhCCCcCcccCcEEEecccCCCCccccC
Confidence 999999999999999997 99999999999999 4455432 2346777888888889999999999765444444
Q ss_pred CCCcccchhhhhhHHHHHHHHHHhcCC-cHHHHHHHHcCCCcccCC-CCCCceeeeeeccCCCCCccccccccC------
Q 047308 592 RFPHWKRWAELNTNFCNDVRNFFRGEG-LLSDLATRLCGSGDIFSD-GRGPAFSFNYIARNTGLPLVDLVSFSG------ 663 (878)
Q Consensus 592 ~~~~~~~~~~~n~~f~d~ir~~l~g~~-~~~~~~~~l~~s~~~f~~-~~~~~~~inyi~~HD~~tL~D~v~~~~------ 663 (878)
.|+. .|++||+.|++.+|.|++|+. ...+++.++.++.++|.. .+.+..++|||++||++||.|+++|+.
T Consensus 392 ~f~~--~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~an 469 (1221)
T PRK14510 392 KFPQ--YWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEAN 469 (1221)
T ss_pred CCCc--ceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHHHhhhccccchhc
Confidence 5654 378999999999999999975 478899999999888863 356788999999999999999999764
Q ss_pred -----CCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCC---CCCCCCcc
Q 047308 664 -----GGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYA---DRKPFDWN 734 (878)
Q Consensus 664 -----~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~---~r~~~~W~ 734 (878)
++...+.|||||.+|++.+..+...+.+++|++++++||+|||||||||||+|+++.|+ |+|+ ++++|+|+
T Consensus 470 ge~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~ 549 (1221)
T PRK14510 470 GEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWG 549 (1221)
T ss_pred cccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCCCCCCccccCCcc
Confidence 34556789999999999999988889999999999999999999999999999999986 6775 57789998
Q ss_pred ccccCCCccHHHHHHHHHHHHhhc------------------cCCccccCCCC---CCCCccCCCCcEEEEEEecccccc
Q 047308 735 ALATGFGIQITEFISFLSSFRLKR------------------KENIDWHGSDH---SPPRWEDPDCKFLAMRLKVDKAES 793 (878)
Q Consensus 735 ~~~~~~~~~l~~f~k~Li~LRk~~------------------~~~i~~~g~~~---~~~~~~~~~~~vlaf~R~~~~~~~ 793 (878)
..+ +++++|+|+||+|||++ .+++.|++.++ ..++|.++..+.+++.......+
T Consensus 550 ~~~----~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~- 624 (1221)
T PRK14510 550 NED----EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGE- 624 (1221)
T ss_pred ccc----HHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCC-
Confidence 643 58999999999999997 03567765433 34678777788898888653210
Q ss_pred cccccCCCCCCeEEEEEeCCCCcEEEEcCC
Q 047308 794 QLSSESSQTKGDLYIACNAADHSESVVLPP 823 (878)
Q Consensus 794 ~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~ 823 (878)
...++.++|++|++.+++++.||.
T Consensus 625 ------~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 625 ------RQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred ------CCCCCeEEEEECCCCCCeEEECCh
Confidence 012468999999999999999986
No 6
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=9.6e-82 Score=749.22 Aligned_cols=535 Identities=23% Similarity=0.359 Sum_probs=402.7
Q ss_pred CCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcC
Q 047308 236 GVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFS 315 (878)
Q Consensus 236 g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~ 315 (878)
.|+++|||++.++| ++|+||||+|++|+|++|++++...+...++|. +..+|+|++.|++...|..|+|+|++.
T Consensus 7 ~~~~~lG~~~~~~~-~~F~vwaP~a~~V~l~~~~~~~~~~~~~~~~m~---~~~~gvw~~~i~~~~~g~~Y~y~v~~~-- 80 (605)
T TIGR02104 7 YYDGELGAVYTPEK-TVFRVWAPTATEVELLLYKSGEDGEPYKVVKMK---RGENGVWSAVLEGDLHGYFYTYQVCIN-- 80 (605)
T ss_pred CCCCCCccEEECCe-eEEEEECCCCCEEEEEEEcCCCCCccceEEecc---cCCCCEEEEEECCCCCCCEEEEEEEcC--
Confidence 47789999999887 999999999999999999876544444566664 567899999999999999999999864
Q ss_pred CCCCCccccceeecCccccccccCCCCCCCCCCCCCccccccc---CCCCCCCCCC-CCCCCCCCcEEEEEecccccCCC
Q 047308 316 QGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCK---EPDFDWGGDV-HLNLPMEKLVVYRLNVMRFSEHK 391 (878)
Q Consensus 316 ~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~W~~~~-~~~~~~~d~VIYevhv~~Ft~~~ 391 (878)
|. ...++||||+++... +. .+.+.+ ...++|..+. ++..+++++||||+||++||.++
T Consensus 81 ---~~----~~~~~DPya~~~~~~-----~~------~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~ 142 (605)
T TIGR02104 81 ---GK----WRETVDPYAKAVTVN-----GK------RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHE 142 (605)
T ss_pred ---CC----eEEEcCCCcceeccC-----CC------cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCC
Confidence 21 357899999998632 11 011222 2346888776 66778999999999999999887
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHhcCCCeEEEccCcccCC---------CCCCCCCCCCCCccCCCCCC
Q 047308 392 SSKLPPDIAGTFSGVTEK-----------VHHLKDLGVNAILLEPILSFDE---------QKGPYFPRHFFSPTKLHGPS 451 (878)
Q Consensus 392 ~s~~~~~~~Gt~~gi~~k-----------LdyLk~LGvt~I~L~PI~~~~~---------~~~gY~~~~yfa~d~~yGt~ 451 (878)
++++. ..|||.|++++ |||||+||||+||||||+++.+ ..|||++.+||+|+++||++
T Consensus 143 ~~~~~--~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~ 220 (605)
T TIGR02104 143 NSGVK--NKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTN 220 (605)
T ss_pred CCCcC--CCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcC
Confidence 76653 47999998876 9999999999999999999864 24799999999999999985
Q ss_pred -CCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC---cCCCCCCCCCccc-cC----CCCCCcccccCCCCHHHHHH
Q 047308 452 -RGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG---ALQGIDDSSYYYA-HR----GEGIETTNVLNCNYPTVQQM 522 (878)
Q Consensus 452 -~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~---~~~~~d~~~yY~~-~~----~~~~~~~~dln~~~p~Vr~~ 522 (878)
..+.++++|||+||++||++||+||||||+||++.. .|.+.. +.||++ +. .+++++++++|+++|+||++
T Consensus 221 p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~ 299 (605)
T TIGR02104 221 PYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTV-PGYYYRYNEDGTLSNGTGVGNDTASEREMMRKF 299 (605)
T ss_pred CCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCC-CCeeEEECCCCCccCCCcccCCcccCCHHHHHH
Confidence 345667899999999999999999999999999852 455554 355544 22 23466788999999999999
Q ss_pred HHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCC--C---CCCCccc
Q 047308 523 ILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPK--D---TRFPHWK 597 (878)
Q Consensus 523 iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~--~---~~~~~~~ 597 (878)
|+++++||++||||||||||++.++..+++.+ +.+++ ++..++++||||.|+....... . .......
T Consensus 300 i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~------~~~~~--~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~ 371 (605)
T TIGR02104 300 IVDSVLYWVKEYNIDGFRFDLMGIHDIETMNE------IRKAL--NKIDPNILLYGEGWDLGTPLPPEQKATKANAYQMP 371 (605)
T ss_pred HHHHHHHHHHHcCCCEEEEechhcCCHHHHHH------HHHHH--HhhCCCeEEEEccCCCCCCcchhhhhhhhccCCCC
Confidence 99999999999999999999998877665432 22222 4456789999999996643211 0 0111112
Q ss_pred chhhhhhHHHHHHHH---------HHhcC-CcHHHHHHHHcCCCcccC---CCCCCceeeeeeccCCCCCccccccccCC
Q 047308 598 RWAELNTNFCNDVRN---------FFRGE-GLLSDLATRLCGSGDIFS---DGRGPAFSFNYIARNTGLPLVDLVSFSGG 664 (878)
Q Consensus 598 ~~~~~n~~f~d~ir~---------~l~g~-~~~~~~~~~l~~s~~~f~---~~~~~~~~inyi~~HD~~tL~D~v~~~~~ 664 (878)
.++.||+.|++.++. |+.|. +....++..+.++...+. ....|..++||++|||++++.|++.+...
T Consensus 372 ~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~ 451 (605)
T TIGR02104 372 GIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANP 451 (605)
T ss_pred ceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCC
Confidence 467899999999983 44444 345667777777644331 12467789999999999999998876531
Q ss_pred CCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCC---CCCCCCccccccCC
Q 047308 665 GLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYA---DRKPFDWNALATGF 740 (878)
Q Consensus 665 ~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~---~r~~~~W~~~~~~~ 740 (878)
+. ..+.+.+++|+|++++||+|||||||||||+|+++.++ |+|+ .+++|+|+....
T Consensus 452 ~~------------------~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~-- 511 (605)
T TIGR02104 452 DE------------------TEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKAT-- 511 (605)
T ss_pred CC------------------CHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCcccccc--
Confidence 10 12445678999999999999999999999999998765 5664 467899986543
Q ss_pred CccHHHHHHHHHHHHhhccCCccccCCCCC---CCC-ccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCc
Q 047308 741 GIQITEFISFLSSFRLKRKENIDWHGSDHS---PPR-WEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHS 816 (878)
Q Consensus 741 ~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~---~~~-~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~ 816 (878)
...+++|+|+||+|||++ +.+. .+.... ... +....+++++|.|.... ..+..+.++|++|++.++
T Consensus 512 ~~~~~~~~~~Li~lRk~~-pal~-~~~~~~i~~~~~~~~~~~~~vla~~r~~~~--------~~~~~~~llVv~N~s~~~ 581 (605)
T TIGR02104 512 FKDDVNYIKGLIALRKAH-PAFR-LSSAEDIRKHLEFLPAEPSGVIAYRLKDHA--------NGDPWKDIIVIHNANPEP 581 (605)
T ss_pred chHHHHHHHHHHHHHhhC-cccc-CCChhhhcceeEEccCCCCcEEEEEEeCCc--------CCCCcCeEEEEEeCCCCC
Confidence 467999999999999998 1111 111100 000 11124679999997531 001125799999999999
Q ss_pred EEEEcCCCCCCCeEEEEccCCC
Q 047308 817 ESVVLPPPPEGMTWHHLVDTAL 838 (878)
Q Consensus 817 ~~~~Lp~~~~g~~W~~l~dt~~ 838 (878)
+++.||. .+.|+++++|..
T Consensus 582 ~~v~lp~---~~~w~~~~~~~~ 600 (605)
T TIGR02104 582 VDIQLPS---DGTWNVVVDNKN 600 (605)
T ss_pred eEEECCC---CCCEEEEECCCc
Confidence 9999875 258999999875
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2e-79 Score=733.70 Aligned_cols=591 Identities=19% Similarity=0.288 Sum_probs=399.5
Q ss_pred CCCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCc
Q 047308 235 AGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSF 314 (878)
Q Consensus 235 ~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~ 314 (878)
+.|+++|||++.++| ++|+||||+|++|+|++|++.....+...++| . ..+|||++++++...|.+|.|+|+. +
T Consensus 209 y~y~~~LGA~~~~~g-~~F~VWAPtA~~V~L~lyd~~~~~~~~~~~~m---~-~~~GVWsv~v~~~~~G~~Y~Y~V~v-~ 282 (970)
T PLN02877 209 FAYDGPLGAHFSKDA-VSLYLWAPTAQAVSLCLYDDPRGKEPLEIVQL---K-ESNGVWSVEGPKSWEGCYYVYEVSV-Y 282 (970)
T ss_pred ccCCCCCcceEecCC-EEEEEECCCCCEEEEEEecCCCCccceEEecc---c-CCCCEEEEEeccCCCCCeeEEEEee-c
Confidence 457789999999887 99999999999999999987644444444555 2 6789999999999999999999984 3
Q ss_pred CCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCC---CCCCCCCCCcEEEEEecccccCCC
Q 047308 315 SQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGD---VHLNLPMEKLVVYRLNVMRFSEHK 391 (878)
Q Consensus 315 ~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~---~~~~~~~~d~VIYevhv~~Ft~~~ 391 (878)
+|..|.. ....++||||+++..+.. .+...+ +... ...+.+|... .++..+++++||||+|||+||..+
T Consensus 283 ~p~~g~~--~~~~v~DPYA~als~ng~--~S~vvD---l~~~-~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d 354 (970)
T PLN02877 283 HPSTGKV--ETCYANDPYARGLSADGR--RTLLVD---LDSD-DLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSAND 354 (970)
T ss_pred ccCCCcc--cccccCCccceEEecCCC--ceEEEC---Cccc-cCCChhhhhcccccCccCCCcccEEEEEeccccccCC
Confidence 4444431 245789999999963211 111110 0000 1123578652 333456899999999999999876
Q ss_pred CCCCCCCCCCCHHHHHHH-------HHHHHhcCCCeEEEccCcccCC---------------------------------
Q 047308 392 SSKLPPDIAGTFSGVTEK-------VHHLKDLGVNAILLEPILSFDE--------------------------------- 431 (878)
Q Consensus 392 ~s~~~~~~~Gt~~gi~~k-------LdyLk~LGvt~I~L~PI~~~~~--------------------------------- 431 (878)
+ .++...+|||.|++++ |+|||+||||||+|||||++..
T Consensus 355 ~-sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~ 433 (970)
T PLN02877 355 E-TVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAI 433 (970)
T ss_pred C-CCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhccccc
Confidence 3 4556789999999987 5556666999999999998732
Q ss_pred -----CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC-------cCCCCCCCCCcc
Q 047308 432 -----QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG-------ALQGIDDSSYYY 499 (878)
Q Consensus 432 -----~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~-------~~~~~d~~~yY~ 499 (878)
..|||+|.+||+|+++|+++.+...+|.|||+||++||++||+|||||||||++.. .+..+. +.||+
T Consensus 434 ~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~v-P~YY~ 512 (970)
T PLN02877 434 QDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIV-PGYYL 512 (970)
T ss_pred ccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCC-CCceE
Confidence 45899999999999999996444479999999999999999999999999999763 234443 46776
Q ss_pred ccCCC----CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHc--Ccc-cc
Q 047308 500 AHRGE----GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAF--DPL-LS 572 (878)
Q Consensus 500 ~~~~~----~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~--d~~-~~ 572 (878)
+.... ...|+++.+++++|||++|+|+++||++||||||||||++.++..+.+... ...+++|.. +.+ .+
T Consensus 513 r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~---~~~L~~i~~~~~~~dg~ 589 (970)
T PLN02877 513 RRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRA---KDALQSLTLERDGVDGS 589 (970)
T ss_pred EECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHH---HHHHHHHhhhhcccCCC
Confidence 54322 245778889999999999999999999999999999999999887754322 123444422 111 25
Q ss_pred ccEEEeecCCCCCCCCCCC---CCCc---ccchhhhhhHHHHHHHH---HH--hcCCcHH--------------------
Q 047308 573 KAKLIADYWDPHGVAPKDT---RFPH---WKRWAELNTNFCNDVRN---FF--RGEGLLS-------------------- 621 (878)
Q Consensus 573 ~~~ligE~w~~~~~~~~~~---~~~~---~~~~~~~n~~f~d~ir~---~l--~g~~~~~-------------------- 621 (878)
+++|+||+|+......... .... -.+++.||+.++|.+|. |- ..+|+..
T Consensus 590 ~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~ 669 (970)
T PLN02877 590 SIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELM 669 (970)
T ss_pred ceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhh
Confidence 7899999999654321110 0000 01345555555555542 10 0001110
Q ss_pred ------HHHHHHcCCCcc------------------cCC-----CCCCceeeeeeccCCCCCccccccccCCCCCCcccc
Q 047308 622 ------DLATRLCGSGDI------------------FSD-----GRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSW 672 (878)
Q Consensus 622 ------~~~~~l~~s~~~------------------f~~-----~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~sw 672 (878)
.+...|.|+..- |.. ...|.++|||+++|||.||+|++.+....
T Consensus 670 ~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~------- 742 (970)
T PLN02877 670 LATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPM------- 742 (970)
T ss_pred hhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCC-------
Confidence 111223332211 110 13588899999999999999998776421
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCC---CCCCCCccccccC---------
Q 047308 673 NCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYA---DRKPFDWNALATG--------- 739 (878)
Q Consensus 673 n~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~---~r~~~~W~~~~~~--------- 739 (878)
+ ...+.|.++.+++++++|++||||||++|+||.|++.++ |+|+ ..|.++|+....+
T Consensus 743 -----~-----~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~ 812 (970)
T PLN02877 743 -----E-----ISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKE 812 (970)
T ss_pred -----C-----CCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhH
Confidence 0 124667889999999999999999999999999999986 7885 4678899873210
Q ss_pred CC-----------------------ccHHHHHHHHHHHHhhc-----------cCCccccCCCCCCCCccCCCCcEEEEE
Q 047308 740 FG-----------------------IQITEFISFLSSFRLKR-----------KENIDWHGSDHSPPRWEDPDCKFLAMR 785 (878)
Q Consensus 740 ~~-----------------------~~l~~f~k~Li~LRk~~-----------~~~i~~~g~~~~~~~~~~~~~~vlaf~ 785 (878)
.+ ..+.+++|.||+||+++ ...+.|+... + +....+|+|.
T Consensus 813 ~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g---~---~~~~gvi~~~ 886 (970)
T PLN02877 813 KNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTG---P---SSIPGVIVMS 886 (970)
T ss_pred hcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccC---C---CcCCCEEEEE
Confidence 01 33588999999999998 1223333210 0 1135899999
Q ss_pred EecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCC-ccCCCCceeeecCceEEEEEc
Q 047308 786 LKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGF-FSTEGKPVLEQMAGLYTYEMK 864 (878)
Q Consensus 786 R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~-~~~~~~~~~~~~~~~~~~~vp 864 (878)
..+.....+...+.+...+.++|+||.+++.+++.+|... .|..-+..-.....+ ... ... ......+++||
T Consensus 887 i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~---~~~~~l~~v~~~~~d~~~~-~~~---~~~~~~~~tvp 959 (970)
T PLN02877 887 IEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPALK---GRTLELHPVQVMSADEVVK-KSV---YEASSGVFTVP 959 (970)
T ss_pred EcCCCCccccccccccccCcEEEEEcCCCccEEEeccccc---ccceeecccccccccceec-cce---eeccCCeEEec
Confidence 9764211000011122357899999999999999998743 232212111111000 000 000 11223589999
Q ss_pred CcEEEEEEEc
Q 047308 865 PYSCTLFEAS 874 (878)
Q Consensus 865 ~~S~~Vl~~~ 874 (878)
|+|++||+..
T Consensus 960 ~~t~aVfv~~ 969 (970)
T PLN02877 960 PRTTAVFVEH 969 (970)
T ss_pred CceEEEEEee
Confidence 9999999974
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.3e-78 Score=726.23 Aligned_cols=574 Identities=18% Similarity=0.294 Sum_probs=396.4
Q ss_pred CCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccC-CCCEEEEEEcCCCCCceeEEEECCCcCCC
Q 047308 239 SPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINR-SGDIWHASMESTWNFVSYGYRFKGSFSQG 317 (878)
Q Consensus 239 ~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~-~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~ 317 (878)
.+|||++.++| ++|+||||+|++|+|++|++... ...+++|. +. .+|+|++++++...|.+|+|+|+. ++|.
T Consensus 126 ~~LGa~~~~~g-v~FrVWAPtA~~V~L~Ly~~~~~--~~~~~~M~---~~~~~GVWsv~v~g~~~G~~Y~Y~V~v-~~p~ 198 (898)
T TIGR02103 126 LSLGATLTDSG-VTFRLWAPTAQQVKLHIYSASKK--VETTLPMT---RDSTSGVWSAEGGSSWKGAYYRYEVTV-YHPS 198 (898)
T ss_pred CCCCcEEeCCc-EEEEEECCCCCEEEEEEEcCCCC--ccceEeCc---cCCCCCEEEEEECcCCCCCEeEEEEEE-ecCC
Confidence 34999999886 99999999999999999975432 23456653 34 679999999999999999999984 3444
Q ss_pred CCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC---CCCCCcEEEEEecccccCCCCCC
Q 047308 318 DGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLN---LPMEKLVVYRLNVMRFSEHKSSK 394 (878)
Q Consensus 318 ~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~d~VIYevhv~~Ft~~~~s~ 394 (878)
.|.. ....++||||+++..+.. .+...+. ... .-.+.+|..+..|. .+++++||||+|||+||..+++
T Consensus 199 ~G~v--~~~~v~DPYA~als~n~~--~S~VvDl---~~~-~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s- 269 (898)
T TIGR02103 199 TGKV--ETYLVTDPYSVSLSANSE--YSQVVDL---NDP-ALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDES- 269 (898)
T ss_pred CCeE--CCeEEeCcCcceEcCCCC--CeEEeCC---ccc-cCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCC-
Confidence 4431 246789999999973211 1211110 000 01245787665333 3689999999999999987655
Q ss_pred CCCCCCCCHHHHHHH-------HHHHHhcCCCeEEEccCcccCC------------------------------------
Q 047308 395 LPPDIAGTFSGVTEK-------VHHLKDLGVNAILLEPILSFDE------------------------------------ 431 (878)
Q Consensus 395 ~~~~~~Gt~~gi~~k-------LdyLk~LGvt~I~L~PI~~~~~------------------------------------ 431 (878)
.+...+|+|.|++|+ |+|||+||||||+|||||++..
T Consensus 270 ~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (898)
T TIGR02103 270 VPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDS 349 (898)
T ss_pred CCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccccccccccccccccc
Confidence 334678999999987 5556677999999999998731
Q ss_pred ---------------------------CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccC
Q 047308 432 ---------------------------QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484 (878)
Q Consensus 432 ---------------------------~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~ 484 (878)
..|||+|.+||+|+++|+++.++..||+|||+||++||++||+||||||||||
T Consensus 350 ~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt 429 (898)
T TIGR02103 350 GSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHT 429 (898)
T ss_pred cccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccc
Confidence 14799999999999999998677789999999999999999999999999999
Q ss_pred CCCc------CCCCCCCCCccccCCC----CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccc
Q 047308 485 ADGA------LQGIDDSSYYYAHRGE----GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGE 554 (878)
Q Consensus 485 ~~~~------~~~~d~~~yY~~~~~~----~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~ 554 (878)
+.+. +..+. +.||++.... ...+.++++++|+|||++|+|+++||++||||||||||++.++..+++.+
T Consensus 430 ~~~g~~~~s~ld~~~-P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~ 508 (898)
T TIGR02103 430 NASGPNDRSVLDKIV-PGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLA 508 (898)
T ss_pred cccCccCcccccccC-cHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHH
Confidence 9842 23332 5677654321 12344788999999999999999999999999999999999999888653
Q ss_pred cCCchhHHHHHHcCccccccEEEeecCCCCCCCCCC-----CCCCc-ccchhhhhhHHHHHHHHHHhcCC-c--------
Q 047308 555 YLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKD-----TRFPH-WKRWAELNTNFCNDVRNFFRGEG-L-------- 619 (878)
Q Consensus 555 ~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~-----~~~~~-~~~~~~~n~~f~d~ir~~l~g~~-~-------- 619 (878)
+ .+++ +.+.++++|+||+|+........ ..+.. -.+++.||+.+ |+.++|.+ +
T Consensus 509 ~------~~~l--~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~----RDavrGg~~f~~~~~~~~ 576 (898)
T TIGR02103 509 A------REAI--KALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRL----RDAVRGGGPFDSGDALRQ 576 (898)
T ss_pred H------HHHH--HHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccch----hhHhcCCCcccccccccc
Confidence 2 2332 23346899999999864432100 00000 01234455555 44445421 0
Q ss_pred ----H------------------------H-HHHHHHcCCCc----------------c-cCC-----CCCCceeeeeec
Q 047308 620 ----L------------------------S-DLATRLCGSGD----------------I-FSD-----GRGPAFSFNYIA 648 (878)
Q Consensus 620 ----~------------------------~-~~~~~l~~s~~----------------~-f~~-----~~~~~~~inyi~ 648 (878)
. . .+...|.|+.. + |+. ...|.+.|||++
T Consensus 577 ~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs 656 (898)
T TIGR02103 577 NQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVS 656 (898)
T ss_pred CcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeee
Confidence 0 0 11222333211 0 110 135788999999
Q ss_pred cCCCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCC-
Q 047308 649 RNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYA- 726 (878)
Q Consensus 649 ~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~- 726 (878)
+|||.||+|.+.+.... + ...+.|.++.+++++++|++||||||++|+||+|++.++ |+|+
T Consensus 657 ~HDN~TL~D~l~~~~~~------------~-----~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~s 719 (898)
T TIGR02103 657 KHDNQTLWDAISYKAAA------------E-----TPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDS 719 (898)
T ss_pred ccCCccHHHHHHhhCCC------------C-----CCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcC
Confidence 99999999999876421 0 124567888999999999999999999999999999986 7885
Q ss_pred --CCCCCCccccccC--------------------------------CCccHHHHHHHHHHHHhhc-----------cCC
Q 047308 727 --DRKPFDWNALATG--------------------------------FGIQITEFISFLSSFRLKR-----------KEN 761 (878)
Q Consensus 727 --~r~~~~W~~~~~~--------------------------------~~~~l~~f~k~Li~LRk~~-----------~~~ 761 (878)
..|.++|+..... ....+.+++|.||+||+++ ...
T Consensus 720 gD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~ 799 (898)
T TIGR02103 720 GDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKR 799 (898)
T ss_pred chhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhh
Confidence 4677888764321 1245899999999999998 112
Q ss_pred ccccCCCCCCCCccCCCCcEEEEEEeccc-ccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCC
Q 047308 762 IDWHGSDHSPPRWEDPDCKFLAMRLKVDK-AESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPF 840 (878)
Q Consensus 762 i~~~g~~~~~~~~~~~~~~vlaf~R~~~~-~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~ 840 (878)
+.|+... + +....+|+|...+.. ..+ .+.+...+.++|+||.+++.+++ +|.. .+..|.+........
T Consensus 800 v~F~~~g---~---~~~~g~i~~~i~d~~~~~~---~~~d~~~~~ivVv~Na~~~~~~~-~~~~-~~~~~~l~~~~~~~~ 868 (898)
T TIGR02103 800 VDFRNTG---P---DQIPGLIVMSIDDGGIQAG---ASLDPRYDGIVVIFNARPEEVTL-SPDF-AGTGLELHAVQQASG 868 (898)
T ss_pred eEEeccC---C---cCCCCEEEEEEcCCccccc---cccccccCeEEEEEcCCCccEEE-eccc-CCCcEEEEecccccC
Confidence 2332110 0 112589999996531 000 01122357899999999999998 7765 445688764332111
Q ss_pred CCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 841 PGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
...+.. .. . .....+++|||+|++||+..
T Consensus 869 d~~v~~-~~--~--~~~~~~~~vp~~s~~V~~~~ 897 (898)
T TIGR02103 869 DESVAK-SV--Y--SAANGTFTVPAWTTAVFVLP 897 (898)
T ss_pred cccccc-ce--e--eccCCEEEEcCcEEEEEEec
Confidence 000100 00 0 11235899999999999874
No 9
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-75 Score=664.85 Aligned_cols=691 Identities=27% Similarity=0.377 Sum_probs=507.2
Q ss_pred CCccccCcCchhhccccceeeecCCCCeEEEEEeeecccEEEEEEEccccccCCCceEEEEEeeeecCCcccccCCCCcc
Q 047308 87 QPVFTPTTEVDELQKVSTYLFRTDLGGLVSVSVGEKNVNYAVTIDVSSLQTTRGGHKLVLIWGVYTSDSSSYMHLGSQCF 166 (878)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (878)
....|++..+..++.+..++++++.|+++.+.++. .+-++.+++...+..+...|++|+.|+.|- |-+-
T Consensus 4 ~~~~sr~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~e~~~~~~p~~~ve~~~~~d~~~~-~~~~--- 72 (757)
T KOG0470|consen 4 CLISSRFYWHTKLVIVWSVDTLEKTGALKPAKLEF-------YDLRSALEAKSGDLPADVVEKFYEIDPFLV-PFAL--- 72 (757)
T ss_pred hhhhhcceecccceEEeeeeccccccccccccccc-------hhhHHHhhhhcCCCChHHhhcccccccccc-cccc---
Confidence 34567788889999999999999999999876666 333444554445433778899999988871 1000
Q ss_pred CCCCCCCceeeceeeCCCCeEEEEEeecCCCCCeEEEEeeccccCCCCCcchhhccccCcccccccCCCCCCCCCceEEe
Q 047308 167 TPDAKTGSIETPFTPTSFDTFALELGFEAKQTPFYLSFLLKSPLRDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLSFS 246 (878)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~ 246 (878)
.+.++.++... +.+-..+ ..+.++. ++.+| .+||++..
T Consensus 73 ----------------------------------~~~~~~~~~~~----~~~f~~~--~~~~l~~-~~~~y-~~~g~h~~ 110 (757)
T KOG0470|consen 73 ----------------------------------FLRERYKQLDD----GLEFIGK--SEGGLSA-FSRGY-EPLGTHRT 110 (757)
T ss_pred ----------------------------------cchhhHHHHHH----Hhhhhhh--ccCChhh-hhccc-cccceecc
Confidence 12233333321 2222111 1133332 24555 49999999
Q ss_pred cCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCC-------CCCceeEEEECCCcCCCC
Q 047308 247 TDGSLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMEST-------WNFVSYGYRFKGSFSQGD 318 (878)
Q Consensus 247 ~~g~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~-------~~g~~Y~y~i~~~~~~~~ 318 (878)
+++++.|+.|+|.|++|.++ .+++|+... ..+.+ +.+.|+|++.++.. .++..+.+.+... .
T Consensus 111 ~d~~v~~~ewaP~a~~~s~~gd~n~W~~~~----~~~~~--k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p----~ 180 (757)
T KOG0470|consen 111 PDGRVDFTEWAPLAEAVSLIGDFNNWNPSS----NELKP--KDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTP----Y 180 (757)
T ss_pred CCCceeeeeecccccccccccccCCCCCcc----cccCc--ccccceeEEecCcccCCCccccccceeEEEeecC----C
Confidence 99889999999999999999 577776432 22222 56789999999843 2344444444443 2
Q ss_pred CCccccceeecCccccccccCCCCCCCCCCCCCccc-ccccCCCCCCCCCCCCC-CCCCCcEEEEEecccccCCCCCCCC
Q 047308 319 GYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLG-RLCKEPDFDWGGDVHLN-LPMEKLVVYRLNVMRFSEHKSSKLP 396 (878)
Q Consensus 319 g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~W~~~~~~~-~~~~d~VIYevhv~~Ft~~~~s~~~ 396 (878)
|. .....||||+.+.... .. +...+ ...+.++++|+.+..++ .|.++++|||+|||+||.+.++..+
T Consensus 181 g~----~~~~~~~~~~~~~~~~-----~~--~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~ 249 (757)
T KOG0470|consen 181 GE----TCKRIPAWATYVDQEG-----EG--PQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNT 249 (757)
T ss_pred cc----eeeccChHhhcccCCC-----cc--cceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCcccc
Confidence 32 4667788888776321 11 11111 12234578998876544 6666999999999999999877665
Q ss_pred CCCCCCHHHHHHH-HHHHHhcCCCeEEEccCcccC-C-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCC
Q 047308 397 PDIAGTFSGVTEK-VHHLKDLGVNAILLEPILSFD-E-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGI 473 (878)
Q Consensus 397 ~~~~Gt~~gi~~k-LdyLk~LGvt~I~L~PI~~~~-~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI 473 (878)
.+| |+++++| |+|||+||+|||||||||++. . ..+||.+.+||+|.++||++++|. ++.|||.||++||..||
T Consensus 250 --~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~-ri~efK~lVd~aHs~GI 325 (757)
T KOG0470|consen 250 --RGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC-RINEFKELVDKAHSLGI 325 (757)
T ss_pred --ccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc-chHHHHHHHHHHhhCCc
Confidence 455 9999999 999999999999999999994 3 368999999999999999997755 49999999999999999
Q ss_pred EEEEEEecccCCCC------cCCCCCCCCCccccC--CCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 474 EVLLEVVFTRTADG------ALQGIDDSSYYYAHR--GEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 474 ~VILDvV~NH~~~~------~~~~~d~~~yY~~~~--~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
.||||||+||++++ .|.++|+..||+..+ .+...|.+.|||++|+|+++|+++++||++||||||||||.+.
T Consensus 326 ~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~s 405 (757)
T KOG0470|consen 326 EVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVS 405 (757)
T ss_pred EEehhhhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchh
Confidence 99999999999984 367788777777665 3456788999999999999999999999999999999999999
Q ss_pred cccc-----------------ccccccCCchhHHH-HHHcCccccccE-EEeecCCCCCCCCCCCCCCcccchhhhhhHH
Q 047308 546 SLLR-----------------GFHGEYLSRPPLIE-AIAFDPLLSKAK-LIADYWDPHGVAPKDTRFPHWKRWAELNTNF 606 (878)
Q Consensus 546 ~l~~-----------------~~~~~~~~~~~~~~-~ia~d~~~~~~~-ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f 606 (878)
+|++ +..+.+.+.+++.. .++.++++.... +|++.|+..+..... .+|.|.+|.+||..|
T Consensus 406 sm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~-~~P~~~g~~~~d~~y 484 (757)
T KOG0470|consen 406 SMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLG-CFPVWQGGAGFDGLY 484 (757)
T ss_pred hhhhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcC-Cccccccccccchhh
Confidence 9988 44455567778888 778888887777 999999987655544 899999999999999
Q ss_pred HHHHHHHHhcCCcHHH--HHHHHcCCCcc-cCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCCch
Q 047308 607 CNDVRNFFRGEGLLSD--LATRLCGSGDI-FSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKT 683 (878)
Q Consensus 607 ~d~ir~~l~g~~~~~~--~~~~l~~s~~~-f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~ 683 (878)
+.+++.+.++...+.. .+.+++++.++ +.+.|.+.+++||+++||++++.|+++++.....++.+|+|+.+|.+...
T Consensus 485 r~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~ 564 (757)
T KOG0470|consen 485 RLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTS 564 (757)
T ss_pred hHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcch
Confidence 9999999998654444 67788887443 55668999999999999999999999988878888899999999987755
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCC-CCCCCCCC---CCccccccCCCccHHHHHHHHHHHHhhc-
Q 047308 684 AVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGS-PSYADRKP---FDWNALATGFGIQITEFISFLSSFRLKR- 758 (878)
Q Consensus 684 ~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~-n~y~~r~~---~~W~~~~~~~~~~l~~f~k~Li~LRk~~- 758 (878)
.+...|..++++-+..+++++|+||+|||+|||++++++ ++|++.+. .+|.+.+. ....++.+.++|+.+|+.+
T Consensus 565 ~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~-~~~~~~r~~~~l~~F~~~~~ 643 (757)
T KOG0470|consen 565 VIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDL-ADSDLLRYRRQLNSFDREMN 643 (757)
T ss_pred HHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCccccccCcccccc-ccchhhhhhhhhhhhhhHHH
Confidence 555555566666777788889999999999999999986 45654443 34433221 2356788888888888876
Q ss_pred ---------cCCccccCCCCCCCCccCC--CCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCC
Q 047308 759 ---------KENIDWHGSDHSPPRWEDP--DCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEG 827 (878)
Q Consensus 759 ---------~~~i~~~g~~~~~~~~~~~--~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g 827 (878)
...+.|++.......|... .+.+++|.... +....+++|.+|.......+-+|..|.+
T Consensus 644 ~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~-----------~~s~~d~~vg~n~~~~~~iVl~sd~p~~ 712 (757)
T KOG0470|consen 644 LLEERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHD-----------SNSYIDYRVGFNAPGKYTIVLNSDRPKG 712 (757)
T ss_pred HHHHhccccccccccccccchhhheeeeccCCeEEEEEecC-----------CCCCceeEEEecCCCceEEEECCCCCCC
Confidence 1233333221111222211 13444444443 2345789999999999999999999989
Q ss_pred CeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 828 MTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 828 ~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
+.|.++.||...++.++..++.+. ...+-.|.+.++|+...
T Consensus 713 ~~~~rl~dt~~~~p~d~~~~g~~~------~l~VY~~~~~a~vl~~~ 753 (757)
T KOG0470|consen 713 GGWNRLDDTALFFPYDFRSEGRPV------SLQVYIPSRTATVLALL 753 (757)
T ss_pred CCccccccccccCccccccCCeee------eEEEEeccCcceEeeec
Confidence 999999999998887776666542 22333444444665543
No 10
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.3e-73 Score=668.66 Aligned_cols=549 Identities=18% Similarity=0.280 Sum_probs=392.5
Q ss_pred CCCceEEec----CCeEEEEEEcCCCCeEEEEE-ecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCC
Q 047308 239 SPMGLSFST----DGSLNFAIFSRHAQGVVLCL-YDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGS 313 (878)
Q Consensus 239 ~~lGa~~~~----~g~v~F~vwaP~A~~V~l~l-~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~ 313 (878)
..||||+.. +| |+|+||||+|++|+|+. |++|+.. +.+| .++.+|+|+++||++..|..|+|+|.+.
T Consensus 125 ~~lGah~~~~~g~~G-v~FaVWAPnA~~VsVvGDFN~Wdg~----~~pM---~~~~~GVWelfipg~~~G~~YKYeI~~~ 196 (730)
T PRK12568 125 RALGAQHVQVGEVPG-VRFAVWAPHAQRVAVVGDFNGWDVR----RHPM---RQRIGGFWELFLPRVEAGARYKYAITAA 196 (730)
T ss_pred HhcCCeEeeECCCCc-EEEEEECCCCCEEEEEEecCCCCcc----ceec---ccCCCCEEEEEECCCCCCCEEEEEEEcC
Confidence 479999863 34 89999999999999995 6666543 3444 3568899999999999999999999865
Q ss_pred cCCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCC-----CCCCCCCcEEEEEeccccc
Q 047308 314 FSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVH-----LNLPMEKLVVYRLNVMRFS 388 (878)
Q Consensus 314 ~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~~d~VIYevhv~~Ft 388 (878)
+|. ...++||||+++... +...+.+.+...|+|+++.| +..+.++++|||+||++|+
T Consensus 197 ----~G~----~~~k~DPYA~~~e~~----------p~~asvV~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~ 258 (730)
T PRK12568 197 ----DGR----VLLKADPVARQTELP----------PATASVVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWR 258 (730)
T ss_pred ----CCe----EeecCCCcceEeecC----------CCCCeEEcCCCCCCCCChhhhhcccccCCCCCcEEEEEEhHHhc
Confidence 343 356799999998632 11112233334689987754 3345789999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHH-HHHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHH
Q 047308 389 EHKSSKLPPDIAGTFSGVTEK-VHHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVK 466 (878)
Q Consensus 389 ~~~~s~~~~~~~Gt~~gi~~k-LdyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~ 466 (878)
.+.+ ...++|++++++ |+|||+|||||||||||++++. ..|||++.+||+|+++||+. +|||+||+
T Consensus 259 ~~~~-----~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~-------~dfk~lV~ 326 (730)
T PRK12568 259 RDGH-----NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSP-------DGFAQFVD 326 (730)
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCH-------HHHHHHHH
Confidence 8642 235799999998 5999999999999999999864 35799999999999999975 99999999
Q ss_pred HHHHCCCEEEEEEecccCCCC--cCCCCCCCCCccc-cCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 047308 467 KLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYYA-HRG----EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGF 539 (878)
Q Consensus 467 ~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~~-~~~----~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGF 539 (878)
+||++||+||||+|+||++.+ ++..+++..+|.. ++. ..|+. ..+|+++|+||++|+++++||+++||||||
T Consensus 327 ~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~-~~~N~~~peVr~~li~~a~~Wl~eyhIDG~ 405 (730)
T PRK12568 327 ACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNT-LIYNYGRPEVTAYLLGSALEWIEHYHLDGL 405 (730)
T ss_pred HHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCC-eecccCCHHHHHHHHHHHHHHHHHhCceEE
Confidence 999999999999999999985 4667776666643 221 12333 268999999999999999999999999999
Q ss_pred EEccCcccc-cccc---cccCCc----------hhHHHHHH--cCccccccEEEeecCCCCCCC-----CCCCCCCcccc
Q 047308 540 CFINASSLL-RGFH---GEYLSR----------PPLIEAIA--FDPLLSKAKLIADYWDPHGVA-----PKDTRFPHWKR 598 (878)
Q Consensus 540 RfD~a~~l~-~~~~---~~~~~~----------~~~~~~ia--~d~~~~~~~ligE~w~~~~~~-----~~~~~~~~~~~ 598 (878)
|||++.+++ +++. ++|..+ ..+++.+. .+...|++++|||.+...+.. .+..+|
T Consensus 406 R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGF----- 480 (730)
T PRK12568 406 RVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGF----- 480 (730)
T ss_pred EEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCc-----
Confidence 999876554 3321 122211 13444442 234557899999976532211 122234
Q ss_pred hhhhhhHHHHHHHHHHhcCCcHHHHH-HHHcCCCcccCCCCCCceeee--eeccCCCCCccccccccCCCCCCc-ccccC
Q 047308 599 WAELNTNFCNDVRNFFRGEGLLSDLA-TRLCGSGDIFSDGRGPAFSFN--YIARNTGLPLVDLVSFSGGGLASE-LSWNC 674 (878)
Q Consensus 599 ~~~~n~~f~d~ir~~l~g~~~~~~~~-~~l~~s~~~f~~~~~~~~~in--yi~~HD~~tL~D~v~~~~~~~~~~-~swn~ 674 (878)
...||++|+++++++++.+....... ..|+ |+ ....++-| +..+||... +. -|...
T Consensus 481 d~kwn~gwm~d~l~y~~~dp~~r~~~h~~lt-----f~--~~y~~~e~fvlp~SHDEvv-------------hgk~sl~~ 540 (730)
T PRK12568 481 THKWNMGWMHDTLHYMQRDPAERAHHHSQLT-----FG--LVYAFSERFVLPLSHDEVV-------------HGTGGLLG 540 (730)
T ss_pred CcEeCChhHHHHHHHHhhCchhhhhhhhhhh-----hh--hhhhhhccEeccCCCcccc-------------cCchhhhh
Confidence 47899999999999999875433221 1121 11 11222333 446787421 10 01111
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHH
Q 047308 675 GEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSF 754 (878)
Q Consensus 675 g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~L 754 (878)
.++|. ...+.+.+|++++++|++||.||||||+|||+.. .|+...+++|..++.+.++.+.+|+|.|++|
T Consensus 541 kmpGd------~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~----ew~~~~~ldW~ll~~~~h~~~~~~~~dLn~l 610 (730)
T PRK12568 541 QMPGD------DWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWA----DWNHDQSLDWHLLDGARHRGMQQLVGDLNAA 610 (730)
T ss_pred cCCCC------HHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcc----cccCCCCccccccCChhHHHHHHHHHHHHHH
Confidence 23331 2456788999999999999999999999999976 5677889999998766678999999999999
Q ss_pred HhhccCCccccCCC--CCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCe
Q 047308 755 RLKRKENIDWHGSD--HSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMT 829 (878)
Q Consensus 755 Rk~~~~~i~~~g~~--~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~ 829 (878)
|+++ . .++..+ ...+.|. +.+++|++|.|.+.. ...+.++||+||++.++.-.....|..+.
T Consensus 611 y~~~--p-aL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~----------~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~ 677 (730)
T PRK12568 611 LRRT--P-ALYRGTHRADGFDWSVADDARNSVLAFIRHDPD----------GGGVPLLAVSNLTPQPHHDYRVGVPRAGG 677 (730)
T ss_pred HHhC--h-hhhcccCCCCCeEEEeCCCCCCcEEEEEEecCC----------CCCCeEEEEECCCCCCccCeEECCCCCCe
Confidence 9998 1 111111 1223454 456689999998641 12356999999999976644445666789
Q ss_pred EEEEccCCCCC-CCCccCCCCce------eeecCceEEEEEcCcEEEEEEEc
Q 047308 830 WHHLVDTALPF-PGFFSTEGKPV------LEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 830 W~~l~dt~~~~-~~~~~~~~~~~------~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
|++++||+... +|.-......+ ......+++++|||+|++||+..
T Consensus 678 ~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 678 WREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred EEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 99999999754 33211111111 12234568899999999999875
No 11
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=6e-72 Score=661.45 Aligned_cols=555 Identities=17% Similarity=0.233 Sum_probs=382.8
Q ss_pred CCCceEEecC-C--eEEEEEEcCCCCeEEEEE-ecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCc
Q 047308 239 SPMGLSFSTD-G--SLNFAIFSRHAQGVVLCL-YDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSF 314 (878)
Q Consensus 239 ~~lGa~~~~~-g--~v~F~vwaP~A~~V~l~l-~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~ 314 (878)
..||||...+ | +++|+||||+|++|+|+. |+.|+... .+| .+..+|+|++.|++..+|..|+|+|.+.
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~----~pM---~~~~~GvW~~~vpg~~~g~~Yky~I~~~- 96 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFD----HPM---QRLDFGFWGAFVPGARPGQRYKFRVTGA- 96 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccccc----ccc---cccCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 4799998764 1 389999999999999995 66664322 333 3456799999999999999999999875
Q ss_pred CCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC---CC-CCCcEEEEEecccccCC
Q 047308 315 SQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLN---LP-MEKLVVYRLNVMRFSEH 390 (878)
Q Consensus 315 ~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~---~~-~~d~VIYevhv~~Ft~~ 390 (878)
+|. ...++||||+.+.... .. ++++..+.|+|+++.|.. ++ .++++|||+||++|+..
T Consensus 97 ---~g~----~~~~~DPYa~~~~~~~----------~~-~svv~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~ 158 (639)
T PRK14706 97 ---AGQ----TVDKMDPYGSFFEVRP----------NT-ASIIWEDRFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARR 158 (639)
T ss_pred ---CCC----EEeccCcceEEEecCC----------CC-ceEECCCCCCCCCcccccccCCccCCCcEEEEEehhhcccC
Confidence 333 3467999999986321 11 233434569999877642 22 34599999999999875
Q ss_pred CCCCCCCCCCCCHHHHHHHH-HHHHhcCCCeEEEccCcccCCC-CCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHH
Q 047308 391 KSSKLPPDIAGTFSGVTEKV-HHLKDLGVNAILLEPILSFDEQ-KGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKL 468 (878)
Q Consensus 391 ~~s~~~~~~~Gt~~gi~~kL-dyLk~LGvt~I~L~PI~~~~~~-~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~a 468 (878)
.. ...|+|++++++| +|||+|||||||||||++++.. .|||++.+||+|+++||+. +|||+||++|
T Consensus 159 ~~-----g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~-------~~~~~lv~~~ 226 (639)
T PRK14706 159 DD-----GWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTP-------EDFKYLVNHL 226 (639)
T ss_pred CC-----CCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCH-------HHHHHHHHHH
Confidence 31 2358999999997 9999999999999999998543 5799999999999999975 9999999999
Q ss_pred HHCCCEEEEEEecccCCCC--cCCCCCCCCCc-cccCCC----CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 469 HANGIEVLLEVVFTRTADG--ALQGIDDSSYY-YAHRGE----GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 469 H~~GI~VILDvV~NH~~~~--~~~~~d~~~yY-~~~~~~----~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
|++||+||||+|+||++.+ ++..+|+..+| +.++.. .|+. ..+|+++|+||++|+++++||++|||||||||
T Consensus 227 H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~ 305 (639)
T PRK14706 227 HGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRV 305 (639)
T ss_pred HHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999874 56667765544 333221 2333 35899999999999999999999999999999
Q ss_pred ccCcccc-cccccc-cCC----------chhHHHHHHc--CccccccEEEeecCCCCCCCCCCCCCCcccchhhhhhHHH
Q 047308 542 INASSLL-RGFHGE-YLS----------RPPLIEAIAF--DPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFC 607 (878)
Q Consensus 542 D~a~~l~-~~~~~~-~~~----------~~~~~~~ia~--d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~ 607 (878)
|++.+|. .+++.. |.. ...+++.+.. +...|++++|||.|...+....... .+....+.||+.|+
T Consensus 306 Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~-~G~gFD~~w~~~w~ 384 (639)
T PRK14706 306 DAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTP-YGLGFDYKWAMGWM 384 (639)
T ss_pred eeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccC-CCCccccEeccHHH
Confidence 9977664 343321 111 1234444421 2344688999999874322211111 12233578999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeee--eeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHH
Q 047308 608 NDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFN--YIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAV 685 (878)
Q Consensus 608 d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~in--yi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~ 685 (878)
++++.++.............. .|. .....+.| |++|||........... .+.| .
T Consensus 385 ~~~l~~~~~~~~~r~~~~~~l----t~~--~~y~~~e~~il~~SHDev~~~k~sl~~------------k~~g------~ 440 (639)
T PRK14706 385 NDTLAYFEQDPLWRKYHHHKL----TFF--NVYRTSENYVLAISHDEVVHLKKSMVM------------KMPG------D 440 (639)
T ss_pred HHHHHHhccCchhhhhchhcc----chh--hhhhccccEecCCCCccccCCccchHh------------HcCC------C
Confidence 999988876543322111000 010 01122333 56999954321100000 0111 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhccCCcccc
Q 047308 686 LERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWH 765 (878)
Q Consensus 686 ~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~ 765 (878)
...+.+++|++++++||+||+|+||||+|||+.+ .|+++.+|+|+..+.+..+.+.+|+|+||+||+++ ...+.
T Consensus 441 ~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~----ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~--paL~~ 514 (639)
T PRK14706 441 WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGT----EWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRER--PDWHR 514 (639)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCC----CCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhC--HHHhh
Confidence 2344567999999999999999999999999753 46778999999876444567999999999999998 12222
Q ss_pred CCC-CCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcE-EEEcCCCCCCCeEEEEccCCCCC
Q 047308 766 GSD-HSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSE-SVVLPPPPEGMTWHHLVDTALPF 840 (878)
Q Consensus 766 g~~-~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~-~~~Lp~~~~g~~W~~l~dt~~~~ 840 (878)
+.. .....|. +.+++|+||.|.+.. ..+.++||+|+++... .+.| ..|..+.|++++||+...
T Consensus 515 gd~~~~~f~wi~~~d~~~~VlaF~R~~~~-----------~~~~vlvV~Nfs~~~~~~y~i-g~p~~g~~~~i~nsd~~~ 582 (639)
T PRK14706 515 GDKREEGLYWVSADDTDNSVYAYVRRDSE-----------SGAWSLAVANLTPVYREQYRI-GVPQGGEYRVLLSTDDGE 582 (639)
T ss_pred CCCCCCCeEEEEeecCCCCEEEEEEecCC-----------CCeeEEEEEeCCCCCcCCeEE-CCCCCCeEEEEEcCCccc
Confidence 211 1122332 345689999998641 2456999999999633 3444 445577999999999753
Q ss_pred -CCCccCCCCcee-----eecCceEEEEEcCcEEEEEEEcc
Q 047308 841 -PGFFSTEGKPVL-----EQMAGLYTYEMKPYSCTLFEASN 875 (878)
Q Consensus 841 -~~~~~~~~~~~~-----~~~~~~~~~~vp~~S~~Vl~~~~ 875 (878)
+|.-........ ......++++|||+|++||+...
T Consensus 583 ~gG~g~~n~~~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 583 YGGFGTQQPDLMASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred cCCCCCCCCceeccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 443221111100 12234688999999999999763
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.2e-71 Score=661.76 Aligned_cols=555 Identities=16% Similarity=0.252 Sum_probs=377.5
Q ss_pred CCCceEEecCC---eEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCc
Q 047308 239 SPMGLSFSTDG---SLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSF 314 (878)
Q Consensus 239 ~~lGa~~~~~g---~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~ 314 (878)
..|||++.+++ +|+|+||||+|++|+|+ .|++|+.. .++| .+..+|+|++++++...|..|+|++...
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~----~~~m---~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~- 96 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGN----AHPL---VRRESGVWEGFIPGAKEGQLYKYHISRQ- 96 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcc----cccc---cccCCCEEEEEeCCCCCCCEEEEEEECC-
Confidence 57999998873 49999999999999999 47666432 2333 3457899999999988999999999653
Q ss_pred CCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC------CCCCCcEEEEEeccccc
Q 047308 315 SQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLN------LPMEKLVVYRLNVMRFS 388 (878)
Q Consensus 315 ~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~------~~~~d~VIYevhv~~Ft 388 (878)
+|. ...+.||||+.+.... ...+.+.+.+.|.|+++.|.. ...++++|||+||++|+
T Consensus 97 ---~g~----~~~~~DPya~~~~~~~----------~~~s~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~ 159 (633)
T PRK12313 97 ---DGY----QVEKIDPFAFYFEARP----------GTASIVWDLPEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWK 159 (633)
T ss_pred ---CCe----EEecCCCceEEEecCC----------CCceEECCCcccCCCChhhhhccccCCCCCCCceEEEEehhccc
Confidence 232 3467999999986421 111233445569999876531 23478999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHH
Q 047308 389 EHKSSKLPPDIAGTFSGVTEKV-HHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVK 466 (878)
Q Consensus 389 ~~~~s~~~~~~~Gt~~gi~~kL-dyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~ 466 (878)
.++. ...|||++++++| ||||+||||+||||||++++. ..|||++.+||+|+++||+. +|||+||+
T Consensus 160 ~~~~-----~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~-------~d~k~lv~ 227 (633)
T PRK12313 160 RNED-----GRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTP-------EDFMYLVD 227 (633)
T ss_pred cCCC-----CCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCH-------HHHHHHHH
Confidence 8652 3469999999995 999999999999999999875 35799999999999999976 99999999
Q ss_pred HHHHCCCEEEEEEecccCCCC--cCCCCCCCCCcc-ccCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 047308 467 KLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYY-AHRG----EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGF 539 (878)
Q Consensus 467 ~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~-~~~~----~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGF 539 (878)
+||++||+||||+|+||++.+ .+..++...+|. .++. ..|+ ..+||+++|+||++|+++++||+++||||||
T Consensus 228 ~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~ 306 (633)
T PRK12313 228 ALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWG-ALNFDLGKNEVRSFLISSALFWLDEYHLDGL 306 (633)
T ss_pred HHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999999999999999999974 344455443443 2221 1233 3689999999999999999999999999999
Q ss_pred EEccCcccc-ccc--ccccC----------CchhHHHHHHc--CccccccEEEeecCCCCCCCCCCCCCCcccchhhhhh
Q 047308 540 CFINASSLL-RGF--HGEYL----------SRPPLIEAIAF--DPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNT 604 (878)
Q Consensus 540 RfD~a~~l~-~~~--~~~~~----------~~~~~~~~ia~--d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~ 604 (878)
|||++.+++ .+. .+.|. ....+++.+.. +...|++++|||.|...+.........+......|+.
T Consensus 307 R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~ 386 (633)
T PRK12313 307 RVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNM 386 (633)
T ss_pred EEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCc
Confidence 999887553 221 00011 11235554422 3345689999998764322211100111122467888
Q ss_pred HHHHHHHHHHhcCCcHHHH-----HHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCC
Q 047308 605 NFCNDVRNFFRGEGLLSDL-----ATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGP 679 (878)
Q Consensus 605 ~f~d~ir~~l~g~~~~~~~-----~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~ 679 (878)
.|.++++.++..++...+. ...+.. .|. ...++..+||...... .++...+ .|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------e~~~l~~sHD~~~~g~----------~~~~~~~--~g- 444 (633)
T PRK12313 387 GWMNDTLRYFEEDPIYRKYHHNLLTFSFMY---AFS------ENFVLPFSHDEVVHGK----------KSLMHKM--PG- 444 (633)
T ss_pred HHHHHHHHHhhhCccccccccccchHHHhh---hhh------cccccCCCCcccccCC----------ccHHHhc--CC-
Confidence 9999988888765321111 000100 011 1124567888531000 0000000 11
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhcc
Q 047308 680 TTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRK 759 (878)
Q Consensus 680 t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~ 759 (878)
+ ...+.+++|++++++||+||+||||||+|+|+.+. |+.+++|+|+....+.++++++|+|+||+||+++
T Consensus 445 --~---~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~----~~~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~- 514 (633)
T PRK12313 445 --D---RWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLE----WKHDESLEWHLLEDPMNAGMQRFTSDLNQLYKDE- 514 (633)
T ss_pred --C---HHHHHHHHHHHHHHHHhCCCCcEeecccccccCcc----CCccCCCCccccCChhHHHHHHHHHHHHHHHHhC-
Confidence 0 12335678999999999999999999999999764 3456899999876555678999999999999998
Q ss_pred CCccccCCC-CCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEE-EEcCCCCCCCeEEEEc
Q 047308 760 ENIDWHGSD-HSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSES-VVLPPPPEGMTWHHLV 834 (878)
Q Consensus 760 ~~i~~~g~~-~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~-~~Lp~~~~g~~W~~l~ 834 (878)
+.+ ..+.. .....|. +.++++++|.|... ..++.++||+|+++.+.. +.++ .|.++.|++++
T Consensus 515 paL-~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~-----------~~~~~llvv~N~s~~~~~~y~i~-~p~~g~~~~il 581 (633)
T PRK12313 515 PAL-WELDFSPDGFEWIDADDADQSVLSFIRKGK-----------NKGDFLVVVFNFTPVEREDYRIG-VPVAGIYEEIL 581 (633)
T ss_pred hHh-hcccCCCCCcEEEECcCCCCCEEEEEEeCC-----------CCCceEEEEEeCCCCcccceeEC-CCCCCeEEEEE
Confidence 111 11110 0112232 22457999999752 135789999999987554 3333 33356999999
Q ss_pred cCCCCC-CCCccCCCCce------eeecCceEEEEEcCcEEEEEEEccC
Q 047308 835 DTALPF-PGFFSTEGKPV------LEQMAGLYTYEMKPYSCTLFEASNG 876 (878)
Q Consensus 835 dt~~~~-~~~~~~~~~~~------~~~~~~~~~~~vp~~S~~Vl~~~~~ 876 (878)
+|+... +|......... .........+.|||+|++||+..+.
T Consensus 582 nsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 582 NTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred cCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 998654 33221111111 1123345789999999999998653
No 13
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-70 Score=664.63 Aligned_cols=553 Identities=16% Similarity=0.249 Sum_probs=375.6
Q ss_pred CCCceEEec---CCeEEEEEEcCCCCeEEEEE-ecCCCCCCCceeeccCccccC-CCCEEEEEEcCCCCCceeEEEECCC
Q 047308 239 SPMGLSFST---DGSLNFAIFSRHAQGVVLCL-YDDTTADRPALELDLDPYINR-SGDIWHASMESTWNFVSYGYRFKGS 313 (878)
Q Consensus 239 ~~lGa~~~~---~g~v~F~vwaP~A~~V~l~l-~~~~~~~~~~~~~~l~~~~~~-~~gvW~v~i~~~~~g~~Y~y~i~~~ 313 (878)
..||||+.. .++|+|+||||+|++|+|+. |++|+... .+| .+. .+|+|++.|++...|..|+|++...
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~----~~m---~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRR----HPM---RLRGESGVWELFIPGLGEGELYKFEILTA 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCCcc----ccc---eEcCCCCEEEEEeCCCCCCCEEEEEEeCC
Confidence 579999986 23499999999999999996 76664322 233 344 6799999999998999999999864
Q ss_pred cCCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC------CCCCCcEEEEEecccc
Q 047308 314 FSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLN------LPMEKLVVYRLNVMRF 387 (878)
Q Consensus 314 ~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~------~~~~d~VIYevhv~~F 387 (878)
+|. ...+.||||+++.... ...+.+.+.+.|+|+++.|+. +.+++++|||+||++|
T Consensus 191 ----~g~----~~~~~DPYa~~~~~~~----------~~~s~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f 252 (726)
T PRK05402 191 ----DGE----LLLKADPYAFAAEVRP----------ATASIVADLSQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSW 252 (726)
T ss_pred ----CCc----EeecCCCceEEEecCC----------CCcEEEeCCccCCCCCcchhhcccccCcccCCcEEEEEehhhh
Confidence 333 3458999999987421 112234455679999887642 2467899999999999
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHH-HHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHH
Q 047308 388 SEHKSSKLPPDIAGTFSGVTEKV-HHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMV 465 (878)
Q Consensus 388 t~~~~s~~~~~~~Gt~~gi~~kL-dyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV 465 (878)
+.+.+ ....|||+||+++| ||||+||||+||||||++++. ..|||++.+||+|+++||+. +|||+||
T Consensus 253 ~~~~~----~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~-------~dfk~lV 321 (726)
T PRK05402 253 RRHED----GGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTP-------DDFRYFV 321 (726)
T ss_pred ccCCC----CCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCH-------HHHHHHH
Confidence 97621 23569999999996 999999999999999999864 35799999999999999975 9999999
Q ss_pred HHHHHCCCEEEEEEecccCCCC--cCCCCCCCCCccc-cCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccE
Q 047308 466 KKLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYYA-HRG----EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDG 538 (878)
Q Consensus 466 ~~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~~-~~~----~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDG 538 (878)
++||++||+||||+|+||++.+ ++..+++..+|.. +.. ..|+. ..+|+++|+||++|+++++||+++|||||
T Consensus 322 ~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~-~~~n~~~~~v~~~l~~~~~~W~~e~~iDG 400 (726)
T PRK05402 322 DACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGT-LIFNYGRNEVRNFLVANALYWLEEFHIDG 400 (726)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCC-ccccCCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 9999999999999999999874 4555565444432 221 12332 47899999999999999999999999999
Q ss_pred EEEccCcccc-cccc---cccCC----------chhHHHHHHc--CccccccEEEeecCCCCCC-----CCCCCCCCccc
Q 047308 539 FCFINASSLL-RGFH---GEYLS----------RPPLIEAIAF--DPLLSKAKLIADYWDPHGV-----APKDTRFPHWK 597 (878)
Q Consensus 539 FRfD~a~~l~-~~~~---~~~~~----------~~~~~~~ia~--d~~~~~~~ligE~w~~~~~-----~~~~~~~~~~~ 597 (878)
||||++.++. .+.. +.+.. ...+++.+.. +...+++++|||.+..... ..+..+|
T Consensus 401 ~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gf---- 476 (726)
T PRK05402 401 LRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGF---- 476 (726)
T ss_pred EEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCC----
Confidence 9999876553 2211 00110 1234544422 3345689999997653221 1112223
Q ss_pred chhhhhhHHHHHHHHHHhcCCcHHHHH-HHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCC
Q 047308 598 RWAELNTNFCNDVRNFFRGEGLLSDLA-TRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGE 676 (878)
Q Consensus 598 ~~~~~n~~f~d~ir~~l~g~~~~~~~~-~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~ 676 (878)
...||+.|++++.+++..+....... ..+.-+ .++. .....+++.+||.....+. ++.. ..
T Consensus 477 -d~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~----~~e~~~l~~sHD~~~~g~~----------~l~~--~~ 538 (726)
T PRK05402 477 -GYKWNMGWMHDTLDYMERDPIYRKYHHNELTFS-LLYA----YSENFVLPLSHDEVVHGKG----------SLLG--KM 538 (726)
T ss_pred -CceecCCcchHHHHHHhhCcccccccccchhHH-HhHh----hhccccCCCCCceeeeCcc----------cHHh--hC
Confidence 35678888888777776442211100 000000 0000 0011346678885321100 0000 00
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHh
Q 047308 677 EGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRL 756 (878)
Q Consensus 677 ~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk 756 (878)
.| + ...+.+++|++++++||+||+||||||||+|+.+.. +.+++|+|+..+.+.++++++|+|+|++||+
T Consensus 539 ~g---~---~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~----~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~ 608 (726)
T PRK05402 539 PG---D---DWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW----NHDASLDWHLLDFPWHRGVQRLVRDLNHLYR 608 (726)
T ss_pred CC---C---HHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC----CccCcCCccccCCcchHHHHHHHHHHHHHHH
Confidence 11 0 123356789999999999999999999999999743 4578999998655556789999999999999
Q ss_pred hccCCccccCCC-CCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcE-EEEcCCCCCCCeEE
Q 047308 757 KRKENIDWHGSD-HSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSE-SVVLPPPPEGMTWH 831 (878)
Q Consensus 757 ~~~~~i~~~g~~-~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~-~~~Lp~~~~g~~W~ 831 (878)
++ ...+.+.. .....|. +.+.++++|.|..+ +.++.++||+|+++.++ .+.+.. |.++.|+
T Consensus 609 ~~--~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~-----------~~~~~vlvv~N~~~~~~~~y~i~~-p~~g~~~ 674 (726)
T PRK05402 609 AE--PALHELDFDPEGFEWIDADDAENSVLSFLRRGK-----------DDGEPLLVVCNFTPVPRHDYRLGV-PQAGRWR 674 (726)
T ss_pred hC--hhhhccccCcCCeeEEecccCCCCEEEEEEecC-----------CCCCeEEEEEeCCCCcccceEECC-CCCCeEE
Confidence 98 11222211 1112232 33568999999753 12478999999998754 334432 3356999
Q ss_pred EEccCCCCC-CCCccCCCCcee------eecCceEEEEEcCcEEEEEEEc
Q 047308 832 HLVDTALPF-PGFFSTEGKPVL------EQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 832 ~l~dt~~~~-~~~~~~~~~~~~------~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
++++|+... +|.....+.... ......+.+.|||+|++||+..
T Consensus 675 ~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~ 724 (726)
T PRK05402 675 EVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLILKPE 724 (726)
T ss_pred EEEcCcchhhCCCCCCCCCceeccccccCCCCCEEEEEeCCCEEEEEEEc
Confidence 999998754 332211111111 1123457899999999999874
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.6e-70 Score=652.74 Aligned_cols=548 Identities=17% Similarity=0.239 Sum_probs=367.3
Q ss_pred CCCceEEec----CCeEEEEEEcCCCCeEEEEE-ecCCCCCCCceeeccCccccC-CCCEEEEEEcCCCCCceeEEEECC
Q 047308 239 SPMGLSFST----DGSLNFAIFSRHAQGVVLCL-YDDTTADRPALELDLDPYINR-SGDIWHASMESTWNFVSYGYRFKG 312 (878)
Q Consensus 239 ~~lGa~~~~----~g~v~F~vwaP~A~~V~l~l-~~~~~~~~~~~~~~l~~~~~~-~~gvW~v~i~~~~~g~~Y~y~i~~ 312 (878)
..||||+.+ +| ++|+||||+|++|.|++ |++++.. ..+| .+. .+|+|++.+++..+|..|+|+|..
T Consensus 15 ~~LGah~~~~~~~~g-~~FrvwAP~A~~V~L~~dfn~w~~~----~~~m---~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~ 86 (613)
T TIGR01515 15 ELLGSHYMELDGVSG-TRFCVWAPNAREVRVAGDFNYWDGR----EHPM---RRRNDNGIWELFIPGIGEGELYKYEIVT 86 (613)
T ss_pred HhcCceEeccCCcCc-EEEEEECCCCCEEEEEEecCCCCCc----eecc---eEecCCCEEEEEeCCCCCCCEEEEEEEC
Confidence 479999987 45 89999999999999995 6555432 2333 233 479999999999999999999985
Q ss_pred CcCCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCC-----CCCCCC-CcEEEEEeccc
Q 047308 313 SFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVH-----LNLPME-KLVVYRLNVMR 386 (878)
Q Consensus 313 ~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~~-d~VIYevhv~~ 386 (878)
. +|. ...+.||||+++.... ...+.+.+.+.|.|.+..| +..+++ ++||||+||++
T Consensus 87 ~----~g~----~~~~~DPYA~~~~~~~----------~~~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~ 148 (613)
T TIGR01515 87 N----NGE----IRLKADPYAFYAEVRP----------NTASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGS 148 (613)
T ss_pred C----CCc----EEEeCCCCEeeeccCC----------CCcEEEECCccCccCchhhhhcccccCcccCCceEEEEehhh
Confidence 4 232 3578999999986321 1112334445677766544 333444 68999999999
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHH-HHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHH
Q 047308 387 FSEHKSSKLPPDIAGTFSGVTEKV-HHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEM 464 (878)
Q Consensus 387 Ft~~~~s~~~~~~~Gt~~gi~~kL-dyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~L 464 (878)
|+. .|||++|+++| ||||+||||+||||||++++. ..|||++.+||+|+++||++ +|||+|
T Consensus 149 ~~~----------~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~-------~dlk~l 211 (613)
T TIGR01515 149 WRH----------GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTP-------DDFMYF 211 (613)
T ss_pred ccC----------CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCH-------HHHHHH
Confidence 974 39999999996 999999999999999999864 34799999999999999976 999999
Q ss_pred HHHHHHCCCEEEEEEecccCCCC--cCCCCCCCCCcc-ccCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 465 VKKLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYY-AHRG----EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 465 V~~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~-~~~~----~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
|++||++||+||||+|+||++.+ ++..+++..+|+ .++. ..|+ .++||+++|+||++|+++++||++|||||
T Consensus 212 V~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~-~~~~~~~~~~Vr~~l~~~~~~W~~ey~iD 290 (613)
T TIGR01515 212 VDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWG-TLIFDYGRPEVRNFLVANALYWAEFYHID 290 (613)
T ss_pred HHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999975 455555444443 3221 1233 36899999999999999999999999999
Q ss_pred EEEEccCccccc-cc------cc--c-----cCCchhHHHHHHc--CccccccEEEeecCCCCCCCCCCCCCCcccchhh
Q 047308 538 GFCFINASSLLR-GF------HG--E-----YLSRPPLIEAIAF--DPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAE 601 (878)
Q Consensus 538 GFRfD~a~~l~~-~~------~~--~-----~~~~~~~~~~ia~--d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~ 601 (878)
|||||++.++.. ++ |. + ......+++.+.. +...+++++|||.+.............+......
T Consensus 291 G~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~ 370 (613)
T TIGR01515 291 GLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYK 370 (613)
T ss_pred EEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCee
Confidence 999999765541 11 10 0 0011235555422 3345789999998753322111000011122467
Q ss_pred hhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCC
Q 047308 602 LNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTT 681 (878)
Q Consensus 602 ~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~ 681 (878)
||+.|.+++++++..+.....+..........+. ......++.+||...-.+. ++.- ...|.
T Consensus 371 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~~sHD~~~~g~~----------~i~~--~~~g~-- 432 (613)
T TIGR01515 371 WNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYA----FSENFVLPLSHDEVVHGKK----------SLLN--KMPGD-- 432 (613)
T ss_pred eCchHHHHHHHHHhhChhhHhhccccccHHHHHH----hhhccccCCCCCCcccCcc----------cHHH--hCCCc--
Confidence 8889999999888655432222100000000000 0111235677885321100 0000 01110
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhccCC
Q 047308 682 KTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKEN 761 (878)
Q Consensus 682 ~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~ 761 (878)
.....+++|++++++||+||+||||||+|+|+.+. |....+|+|+..+.+.+..+.+|+|+||+||+++ +.
T Consensus 433 ----~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~----~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~-pa 503 (613)
T TIGR01515 433 ----YWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSE----WNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKS-KA 503 (613)
T ss_pred ----hHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCC----CCCCccCCCccccCcccHHHHHHHHHHHHHHhhC-HH
Confidence 11224578999999999999999999999999763 3446799998766556788999999999999997 11
Q ss_pred ccccCCC-CCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEE---EEcCCCCCCCeEEEEc
Q 047308 762 IDWHGSD-HSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSES---VVLPPPPEGMTWHHLV 834 (878)
Q Consensus 762 i~~~g~~-~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~---~~Lp~~~~g~~W~~l~ 834 (878)
.+.+.. .....|. +...++++|.|.... .++.++||+|+++.+.. +.+|. ++.|++++
T Consensus 504 -L~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~-----------~~~~~~vv~N~~~~~~~~Y~i~~p~---~g~~~~il 568 (613)
T TIGR01515 504 -LYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKK-----------HGEALVIICNFTPVVRHQYRVGVPQ---PGQYREVL 568 (613)
T ss_pred -hhccCCCCCceEEEEcccCCCCEEEEEEecCC-----------CCCeEEEEEeCCCCCccceEeCCCC---CCeEEEEE
Confidence 111111 1112222 235679999997631 24579999999998554 44432 46999999
Q ss_pred cCCCCC-CCCccCCCCcee------eecCceEEEEEcCcEEEEEE
Q 047308 835 DTALPF-PGFFSTEGKPVL------EQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 835 dt~~~~-~~~~~~~~~~~~------~~~~~~~~~~vp~~S~~Vl~ 872 (878)
+|+... +|.-........ ......+.+.|||+|++||+
T Consensus 569 ~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 569 NSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred eCChhhcCCCCcCCCCceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 998744 332111111111 12234688999999999984
No 15
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=8.6e-70 Score=641.65 Aligned_cols=608 Identities=16% Similarity=0.198 Sum_probs=415.6
Q ss_pred EEEeecCCCCCeE--EEEeeccccCCCCCcchhhccccCcccccccCCCCCCCCCceEEecCCeEEEEEEcCCCCeEEEE
Q 047308 189 LELGFEAKQTPFY--LSFLLKSPLRDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLC 266 (878)
Q Consensus 189 ~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~ 266 (878)
-.++.|+.+.||. |..+...+.. .-.+|..+.|+.- .++.|| ..|||++.++| ++|++|||+|++|.|+
T Consensus 61 ~~~~~d~~l~~~~~~~~~r~~~~~~---~~~~i~~~~~~l~----~f~~~y-~~lGa~~~~~g-~~FrvWAP~A~~V~Lv 131 (758)
T PLN02447 61 GIYEIDPMLEPYEDHLRYRYSRYRR---RREEIEKNEGGLE----AFSRGY-EKFGFNRSEGG-ITYREWAPGAKAAALI 131 (758)
T ss_pred eeeecCcchhhHHHHHHHHHHHHHH---HHHHHhhcCCCHH----HHHHHH-HhceeEEecCC-EEEEEECCCCCEEEEE
Confidence 4678999999998 6666666543 2344444444321 135666 68999999876 8999999999999998
Q ss_pred -EecCCCCCCCceeeccCccccCCCCEEEEEEcC------CCCCceeEEEECCCcCCCCCCccccceeecCccccccccC
Q 047308 267 -LYDDTTADRPALELDLDPYINRSGDIWHASMES------TWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNS 339 (878)
Q Consensus 267 -l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~------~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPyA~~~~~~ 339 (878)
.|++|+... . ||.+.+.|+|+++||+ +.+|..|+|+|+.. +|. ...++||||+.+...
T Consensus 132 GdFN~W~~~~----~---~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~----~g~----~~~r~dpya~~~~~~ 196 (758)
T PLN02447 132 GDFNNWNPNA----H---WMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETP----DGR----WVDRIPAWIKYAVQA 196 (758)
T ss_pred EecCCCCCCc----c---CceeCCCCEEEEEECCccccccCCCCCEEEEEEEeC----CCc----EEeecCchHheeecc
Confidence 477775432 2 3345678999999998 77899999999865 343 457899999987642
Q ss_pred CCCCCCCCCCCCcccccccC---CCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHH-HHHHHHh
Q 047308 340 IPNHHDLGLPPKYLGRLCKE---PDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTE-KVHHLKD 415 (878)
Q Consensus 340 ~~~~~g~~~~~~~~~~~~~~---~~~~W~~~~~~~~~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~-kLdyLk~ 415 (878)
. +... ....+.+.+. ..|.|++..++ ..++++|||+||+.|+... ..|||+++++ +|+|||+
T Consensus 197 p----~~~~-~~~~svv~dp~~~~~y~w~~~~~~--~~~~~~IYE~Hvg~~~~~~-------~~gty~~~~~~~L~ylk~ 262 (758)
T PLN02447 197 P----GEIG-APYNGVYWDPPEEEKYVFKHPRPP--RPAALRIYEAHVGMSSEEP-------KVNSYREFADDVLPRIKA 262 (758)
T ss_pred C----CccC-CCCceEEeCCCCCCCCCCCCCCCC--CCCCCEEEEEeCCcccCCC-------CCCCHHHHHHHHHHHHHH
Confidence 1 1000 0111222332 24999887543 3467999999999987532 4699999876 5999999
Q ss_pred cCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC---cCCC
Q 047308 416 LGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG---ALQG 491 (878)
Q Consensus 416 LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~---~~~~ 491 (878)
|||||||||||++++. ..+||++.+||+|+++||++ +|||+||++||++||+||||||+||++.+ ++..
T Consensus 263 LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp-------~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~ 335 (758)
T PLN02447 263 LGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTP-------EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNG 335 (758)
T ss_pred cCCCEEEECCccccCCCCCCCcCcccCcccccccCCH-------HHHHHHHHHHHHCCCEEEEEeccccccccccccccc
Confidence 9999999999999865 45799999999999999976 99999999999999999999999999984 3445
Q ss_pred CCC--CCCccccCCC---CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCccccc-------ccccccC---
Q 047308 492 IDD--SSYYYAHRGE---GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLR-------GFHGEYL--- 556 (878)
Q Consensus 492 ~d~--~~yY~~~~~~---~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~-------~~~~~~~--- 556 (878)
++. ..||+.++.+ .|+. ..+|+++++||+||+++++||++||||||||||++++|+. +|.+.+.
T Consensus 336 fDg~~~~Yf~~~~~g~~~~w~~-~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~ 414 (758)
T PLN02447 336 FDGTDGSYFHSGPRGYHWLWDS-RLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYF 414 (758)
T ss_pred cCCCCccccccCCCCCcCcCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCccccc
Confidence 553 3566544321 1222 4799999999999999999999999999999999988753 2322111
Q ss_pred -C-----chhHHHHHH--cCccccccEEEeecCCCCCCCCCCCCCCcccchhhhhhHHHHHHHHHHhcCC----cHHHHH
Q 047308 557 -S-----RPPLIEAIA--FDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFFRGEG----LLSDLA 624 (878)
Q Consensus 557 -~-----~~~~~~~ia--~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~----~~~~~~ 624 (878)
. ...+++.+. .....|++++|||.+...+.........+.+....|++.+.+...++++... .+..+.
T Consensus 415 g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~ 494 (758)
T PLN02447 415 GMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIV 494 (758)
T ss_pred CCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHH
Confidence 0 012233221 1334578999999877543322111111222347889999999999998743 234444
Q ss_pred HHHcCCCcccCCCCCCceeeeeeccCCCCCccccc-ccc-CCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 047308 625 TRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLV-SFS-GGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYV 702 (878)
Q Consensus 625 ~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v-~~~-~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~alllt 702 (878)
..|+.. +.....|.|.++||.....|.- .+. .+. + .+ ..+.+.........+.+.+.|++.+++|+
T Consensus 495 ~sl~~r-------~~~E~~I~y~eSHDevv~Gkksl~~~l~d~---~-my-~~m~~~~~~~~~~~R~~~lhkmirl~~~~ 562 (758)
T PLN02447 495 HTLTNR-------RYTEKCVAYAESHDQALVGDKTIAFWLMDK---E-MY-DGMSTLTPATPVVDRGIALHKMIRLITMA 562 (758)
T ss_pred HHHhcc-------cccCceEeccCCcCeeecCcchhHhhhcch---h-hh-hcCCCChhhhhhHHHHHHHHHHHHHHHHh
Confidence 444321 2345678899999964332211 000 000 0 00 12333333344455566667888889999
Q ss_pred cCCc-eeEecchhccccCCCC-----CCCCC-CCCCCccccccC--CCccHHHHHHHHHHHHhhccCCccccCCCCCCCC
Q 047308 703 SLGV-PILNMGDECGQSSWGS-----PSYAD-RKPFDWNALATG--FGIQITEFISFLSSFRLKRKENIDWHGSDHSPPR 773 (878)
Q Consensus 703 spGi-P~Iy~GdE~G~~~~g~-----n~y~~-r~~~~W~~~~~~--~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~ 773 (878)
+||. +++|||+|||+..+.+ |.|.. ...++|+..+.+ .++.|.+|.|.|++|++++ ...+ .......
T Consensus 563 ~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~--~~L~--~~~~~i~ 638 (758)
T PLN02447 563 LGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKY--GFLT--SEHQYVS 638 (758)
T ss_pred CCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcC--cccc--CCCceee
Confidence 9999 6999999999985432 34443 346899987643 4788999999999999998 1111 1111223
Q ss_pred ccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCC--cEEEEcCCCCCCCeEEEEccCCCCC-CCCccCC--C
Q 047308 774 WEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADH--SESVVLPPPPEGMTWHHLVDTALPF-PGFFSTE--G 848 (878)
Q Consensus 774 ~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~--~~~~~Lp~~~~g~~W~~l~dt~~~~-~~~~~~~--~ 848 (878)
+.+.+++||+|.|. .++||+||++. -..+.+ ..|..+.|++++||+... +|.-... .
T Consensus 639 ~~d~~~~Viaf~R~-----------------~ll~V~NF~p~~s~~~Y~i-gvp~~G~y~~ilnSD~~~fGG~~~~~~~~ 700 (758)
T PLN02447 639 RKDEGDKVIVFERG-----------------DLVFVFNFHPTNSYSDYRV-GCDKPGKYKIVLDSDAWEFGGFGRVDHDA 700 (758)
T ss_pred eecCCCCEEEEEeC-----------------CeEEEEeCCCCCCCCCcEE-CCCCCCeEEEEECCCchhcCCCCccCCCc
Confidence 44567899999993 28999999984 334555 455567999999999754 4432111 1
Q ss_pred Cce-----eeecCceEEEEEcCcEEEEEEEccC
Q 047308 849 KPV-----LEQMAGLYTYEMKPYSCTLFEASNG 876 (878)
Q Consensus 849 ~~~-----~~~~~~~~~~~vp~~S~~Vl~~~~~ 876 (878)
... .......+++.|||+|++||.....
T Consensus 701 ~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~ 733 (758)
T PLN02447 701 DHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDE 733 (758)
T ss_pred cEEecccCcCCCCcEEEEEeCCceEEEEEECCc
Confidence 111 1123456889999999999998654
No 16
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.4e-70 Score=643.30 Aligned_cols=465 Identities=22% Similarity=0.305 Sum_probs=337.8
Q ss_pred EEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCccccceeecC
Q 047308 251 LNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLD 330 (878)
Q Consensus 251 v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~D 330 (878)
|+|+||||+|++|+|++++ . +++| .+.++|+|++++++..+|..|+|+|++. ..++|
T Consensus 1 v~FrlwAP~A~~V~L~l~~----~----~~~m---~k~~~GvW~~~v~~~~~G~~Y~y~v~g~------------~~v~D 57 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG----A----LHAM---QRLGDGWFEITVPPVGPGDRYGYVLDDG------------TPVPD 57 (542)
T ss_pred CEEEEECCCCCEEEEEeCC----C----EEeC---eECCCCEEEEEECCCCCCCEEEEEEeee------------EEecC
Confidence 5799999999999999842 1 3444 4677899999999999999999999752 47899
Q ss_pred ccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHH
Q 047308 331 PYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKV 410 (878)
Q Consensus 331 PyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kL 410 (878)
|||+++... .. ..+.+.+...|+|+++.|+.++++++||||+||++|+. .|||+||+++|
T Consensus 58 Pya~~~~~~------~~----~~S~V~d~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~----------~G~~~gi~~~l 117 (542)
T TIGR02402 58 PASRRQPDG------VH----GPSQVVDPDRYAWQDTGWRGRPLEEAVIYELHVGTFTP----------EGTFDAAIEKL 117 (542)
T ss_pred ccccccccC------CC----CCeEEecCcccCCCCccccCCCccccEEEEEEhhhcCC----------CCCHHHHHHhh
Confidence 999997522 11 11344455579999999988899999999999999985 49999999999
Q ss_pred HHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc-
Q 047308 411 HHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA- 488 (878)
Q Consensus 411 dyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~- 488 (878)
||||+||||+||||||++++. ..|||++.+||+|+++||+. +|||+||++||++||+||||+|+||++.++
T Consensus 118 ~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~-------~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~ 190 (542)
T TIGR02402 118 PYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGP-------DDLKALVDAAHGLGLGVILDVVYNHFGPEGN 190 (542)
T ss_pred HHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCH-------HHHHHHHHHHHHCCCEEEEEEccCCCCCccc
Confidence 999999999999999999874 45799999999999999975 999999999999999999999999998742
Q ss_pred -CCCCCCCCCccccCCCCCCcccccCCCCH---HHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHH
Q 047308 489 -LQGIDDSSYYYAHRGEGIETTNVLNCNYP---TVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEA 564 (878)
Q Consensus 489 -~~~~d~~~yY~~~~~~~~~~~~dln~~~p---~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ 564 (878)
+..+. + ||... ...+|++++|+++| +||++|+++++||++||||||||||++.++.... ...++++
T Consensus 191 ~~~~~~-~-y~~~~--~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~------~~~~l~~ 260 (542)
T TIGR02402 191 YLPRYA-P-YFTDR--YSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTS------AKHILEE 260 (542)
T ss_pred cccccC-c-cccCC--CCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcccc------HHHHHHH
Confidence 33333 3 66433 23456789999999 9999999999999999999999999998875421 0112222
Q ss_pred HH--cCccccc---cEEEeecCCCCCCCCCCCCCCcccchhhhhhHHHHHHHHHHhcCC--c-------HHHHHHHHcCC
Q 047308 565 IA--FDPLLSK---AKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFFRGEG--L-------LSDLATRLCGS 630 (878)
Q Consensus 565 ia--~d~~~~~---~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~--~-------~~~~~~~l~~s 630 (878)
++ .+...++ ++||||.|.............+...++.||+.|++.++.++.|+. + ...++..+...
T Consensus 261 ~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g 340 (542)
T TIGR02402 261 LAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDG 340 (542)
T ss_pred HHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHh
Confidence 21 1122234 899999986433222111111223467899999999999998742 2 23344433311
Q ss_pred ----C--cccC---CC-----CCCceeeeeeccCC---CCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHH
Q 047308 631 ----G--DIFS---DG-----RGPAFSFNYIARNT---GLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQI 693 (878)
Q Consensus 631 ----~--~~f~---~~-----~~~~~~inyi~~HD---~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~ 693 (878)
. ..|. .+ ..+.+.+||++||| +.++.+.+.... ..+++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~-------------------------~~~~~ 395 (542)
T TIGR02402 341 FVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLSQLL-------------------------SPGSL 395 (542)
T ss_pred cccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhhhcC-------------------------CHHHH
Confidence 0 0110 00 13467899999999 445444432111 01468
Q ss_pred HHHHHHHHhcCCceeEecchhccccCCC-------C-------------------------CCC-----CCCCCCCcccc
Q 047308 694 RNFLFVLYVSLGVPILNMGDECGQSSWG-------S-------------------------PSY-----ADRKPFDWNAL 736 (878)
Q Consensus 694 rla~allltspGiP~Iy~GdE~G~~~~g-------~-------------------------n~y-----~~r~~~~W~~~ 736 (878)
++|++++||+||+||||||||+|+++.. + +.. .++++++|+..
T Consensus 396 ~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~ 475 (542)
T TIGR02402 396 KLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEA 475 (542)
T ss_pred HHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccc
Confidence 9999999999999999999999998852 0 000 13688999987
Q ss_pred ccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCc-cCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCC
Q 047308 737 ATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRW-EDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADH 815 (878)
Q Consensus 737 ~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~-~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~ 815 (878)
....+.++++|+|+||+|||++ ..+.. +. ...... .+..++++++.+ . .++++|++|++++
T Consensus 476 ~~~~~~~~~~~yr~Li~lRk~~-~~l~~-~~-~~~~~~~~~~~~~~~~~~~-~--------------~~~~~v~~N~~~~ 537 (542)
T TIGR02402 476 ESGEHARWLAFYRDLLALRREL-PVLLL-PG-ARALEVVVDEDPGWVAVRF-G--------------RGELVLAANLSTS 537 (542)
T ss_pred cccchHHHHHHHHHHHHHhccC-ccccC-CC-cccceeeecCCCCEEEEEE-C--------------CCeEEEEEeCCCC
Confidence 6545678999999999999998 11211 11 111111 123467888873 1 4679999999987
Q ss_pred cEE
Q 047308 816 SES 818 (878)
Q Consensus 816 ~~~ 818 (878)
+++
T Consensus 538 ~~~ 540 (542)
T TIGR02402 538 PVA 540 (542)
T ss_pred CcC
Confidence 654
No 17
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.8e-70 Score=667.73 Aligned_cols=545 Identities=17% Similarity=0.236 Sum_probs=382.8
Q ss_pred CCCceEEecC-----C--eEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEE
Q 047308 239 SPMGLSFSTD-----G--SLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRF 310 (878)
Q Consensus 239 ~~lGa~~~~~-----g--~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i 310 (878)
..||||+... | +|+|+||||+|++|+|+ .|+.|++... +|.+ ...+|+|+++||++..|..|+|+|
T Consensus 621 ~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~----~m~~--~~~~GvW~~fipg~~~G~~Yky~i 694 (1224)
T PRK14705 621 DVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREH----SMRS--LGSSGVWELFIPGVVAGACYKFEI 694 (1224)
T ss_pred HhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcc----cceE--CCCCCEEEEEECCCCCCCEEEEEE
Confidence 4699998531 2 38999999999999999 5988865432 3321 246799999999999999999999
Q ss_pred CCCcCCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCC-----CC-CCCcEEEEEec
Q 047308 311 KGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLN-----LP-MEKLVVYRLNV 384 (878)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~-----~~-~~d~VIYevhv 384 (878)
.+. +|. ...+.||||+.+... +...+.+.+ +.|.|++..|.. .+ .++++|||+||
T Consensus 695 ~~~----~g~----~~~k~DPyA~~~e~~----------p~~aS~V~d-~~~~w~d~~W~~~r~~~~~~~~p~~IYEvHv 755 (1224)
T PRK14705 695 LTK----AGQ----WVEKADPLAFGTEVP----------PLTASRVVE-ASYAFKDAEWMSARAERDPHNSPMSVYEVHL 755 (1224)
T ss_pred EcC----CCc----EEecCCccccccccC----------CCCCeEEeC-CCCCcCChhhhhccccCCCCcCCcEEEEEEe
Confidence 875 343 356789999987632 112223333 359998876532 22 47899999999
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHHH-HHHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHH
Q 047308 385 MRFSEHKSSKLPPDIAGTFSGVTEK-VHHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMK 462 (878)
Q Consensus 385 ~~Ft~~~~s~~~~~~~Gt~~gi~~k-LdyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk 462 (878)
++|+. .|+|++++++ |||||+|||||||||||++++. ..|||++.+||+|+++||+. +|||
T Consensus 756 gsf~~----------~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~-------~dfk 818 (1224)
T PRK14705 756 GSWRL----------GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHP-------DEFR 818 (1224)
T ss_pred ccccc----------CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCH-------HHHH
Confidence 99986 3789999998 6999999999999999999864 35799999999999999975 9999
Q ss_pred HHHHHHHHCCCEEEEEEecccCCCC--cCCCCCCCCCcc-ccCC----CCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 463 EMVKKLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYY-AHRG----EGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 463 ~LV~~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~-~~~~----~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
+||++||++||+||||+|+||++.+ .+..+++..+|+ .++. ..|+. ..||+++++||+||+++++||++|||
T Consensus 819 ~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~-~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 819 FLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGT-LIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCC-ceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999885 355677655443 3321 23444 56899999999999999999999999
Q ss_pred ccEEEEccCcccc-cccc---cccCCc----------hhHHHHHHc--CccccccEEEeecCCCCCCCCCCCCCCcccch
Q 047308 536 IDGFCFINASSLL-RGFH---GEYLSR----------PPLIEAIAF--DPLLSKAKLIADYWDPHGVAPKDTRFPHWKRW 599 (878)
Q Consensus 536 VDGFRfD~a~~l~-~~~~---~~~~~~----------~~~~~~ia~--d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~ 599 (878)
|||||||++.+|+ .++. ++|..+ ..+++.+.. ....+++++|||.+...+.........+....
T Consensus 898 iDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd 977 (1224)
T PRK14705 898 IDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFG 977 (1224)
T ss_pred CCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCC
Confidence 9999999977654 3332 223211 234443321 22356899999987743322111111122234
Q ss_pred hhhhhHHHHHHHHHHhcCCcHHH-----HHHHHcCCCcccCCCCCCceeee--eeccCCCCCccccccccCCCCCCcccc
Q 047308 600 AELNTNFCNDVRNFFRGEGLLSD-----LATRLCGSGDIFSDGRGPAFSFN--YIARNTGLPLVDLVSFSGGGLASELSW 672 (878)
Q Consensus 600 ~~~n~~f~d~ir~~l~g~~~~~~-----~~~~l~~s~~~f~~~~~~~~~in--yi~~HD~~tL~D~v~~~~~~~~~~~sw 672 (878)
.+||+.|++++.+|+..+..... +...+. ..++.| +..+||...-. .-+-
T Consensus 978 ~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~-----------ya~~e~fvl~~SHDevvhg------------k~sl 1034 (1224)
T PRK14705 978 LKWNMGWMHDSLKYASEDPINRKWHHGTITFSLV-----------YAFTENFLLPISHDEVVHG------------KGSM 1034 (1224)
T ss_pred cEecchhhHHHHHHhhhCcchhhcccchHHHHHH-----------HHhhcCEeccccccccccc------------chhH
Confidence 78999999999999887643221 111111 111222 33467742100 0000
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHH
Q 047308 673 NCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLS 752 (878)
Q Consensus 673 n~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li 752 (878)
...+.|. ...++..+|++++++|++||+|+||||+|||+.. .|+....++|..++.+.++.+..|+|.|+
T Consensus 1035 ~~km~Gd------~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~----ew~~~~~LdW~ll~~~~h~~~~~~~rdLn 1104 (1224)
T PRK14705 1035 LRKMPGD------RWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEA----EWSEQHGLDWFLADIPAHRGIQLLTKDLN 1104 (1224)
T ss_pred HHhCCCc------HHHHHHHHHHHHHHHHhcCCcCEEECccccCCCC----CccccccCCCcccCChhhHHHHHHHHHHH
Confidence 0011221 2345567899999999999999999999999986 46667889999987666789999999999
Q ss_pred HHHhhccCCccccC-CCCCCCCcc---CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEE-EEcCCCCCC
Q 047308 753 SFRLKRKENIDWHG-SDHSPPRWE---DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSES-VVLPPPPEG 827 (878)
Q Consensus 753 ~LRk~~~~~i~~~g-~~~~~~~~~---~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~-~~Lp~~~~g 827 (878)
+||+++ ...+.. .+...+.|. +.+++||+|.|.+. .++.++||+||++.++. +.+ .+|..
T Consensus 1105 ~ly~~~--paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~------------~~~~vlvv~Nftp~~~~~y~i-gvp~~ 1169 (1224)
T PRK14705 1105 ELYTST--PALYQRDNEPGGFQWINGGDADRNVLSFIRWDG------------DGNPLVCAINFSGGPHKGYTL-GVPAA 1169 (1224)
T ss_pred HHHhcC--hhhhccCCCCCceEEeecCCCCCcEEEEEEeCC------------CCCEEEEEEcCCCCCccCceE-CCCCC
Confidence 999998 112211 112234564 45678999999863 24569999999999877 444 34456
Q ss_pred CeEEEEccCCCCC-CCCccCCCCce------eeecCceEEEEEcCcEEEEEEEc
Q 047308 828 MTWHHLVDTALPF-PGFFSTEGKPV------LEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 828 ~~W~~l~dt~~~~-~~~~~~~~~~~------~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
+.|++++||+... +|.-..+...+ ......+++++|||++++||+.+
T Consensus 1170 G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1170 GAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred CeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 6999999998754 43221111111 11233468899999999999864
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-65 Score=587.83 Aligned_cols=556 Identities=19% Similarity=0.262 Sum_probs=377.6
Q ss_pred CCCceEEecCC--eEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcC
Q 047308 239 SPMGLSFSTDG--SLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFS 315 (878)
Q Consensus 239 ~~lGa~~~~~g--~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~ 315 (878)
..|||++.+.| .|+|+||||+|+.|.|+ .|++|+... .+|. ...+.|+|+++||++..|..|+|++.+.
T Consensus 24 ~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~----~~~~--~~~~~G~we~~vp~~~~G~~Yky~l~~~-- 95 (628)
T COG0296 24 EKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRR----MPMR--DRKESGIWELFVPGAPPGTRYKYELIDP-- 95 (628)
T ss_pred hhhCcccccCCCCceEEEEECCCCCeEEEEeecCCcccee----cccc--cCCCCceEEEeccCCCCCCeEEEEEeCC--
Confidence 57899987765 49999999999999998 577776532 2221 1235699999999999999999999987
Q ss_pred CCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCC----CCCCCCCCCCCcEEEEEecccccCCC
Q 047308 316 QGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWG----GDVHLNLPMEKLVVYRLNVMRFSEHK 391 (878)
Q Consensus 316 ~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~----~~~~~~~~~~d~VIYevhv~~Ft~~~ 391 (878)
+|. ...++||||+..... +...+.+.+.+.|.|+ +..+..+.+++++||||||++|+.+
T Consensus 96 --~g~----~~~~~DP~a~~~~~~----------p~~aS~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~- 158 (628)
T COG0296 96 --SGQ----LRLKADPYARRQEVG----------PHTASQVVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD- 158 (628)
T ss_pred --CCc----eeeccCchhhccCCC----------CCCcceecCCCCcccccccccccccCCCCCCceEEEEEeeeccCC-
Confidence 443 478999999987632 2223345566679999 5556677799999999999999982
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCC-CCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHH
Q 047308 392 SSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQ-KGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHA 470 (878)
Q Consensus 392 ~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~-~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~ 470 (878)
...|+++..+++|||||+||||||+||||.+++.. .|||+++.||||+++||++ ++||+||++||+
T Consensus 159 ------~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtP-------edfk~fVD~aH~ 225 (628)
T COG0296 159 ------RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTP-------EDFKALVDAAHQ 225 (628)
T ss_pred ------CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCH-------HHHHHHHHHHHH
Confidence 24689999999999999999999999999999754 5799999999999999987 999999999999
Q ss_pred CCCEEEEEEecccCCCC--cCCCCCCCCCccc-cCCCC--CCcccc-cCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 471 NGIEVLLEVVFTRTADG--ALQGIDDSSYYYA-HRGEG--IETTNV-LNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 471 ~GI~VILDvV~NH~~~~--~~~~~d~~~yY~~-~~~~~--~~~~~d-ln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+||+||||+||||++.+ .+..+++..+|.. ++..+ ..|+.. +|+++++||+||+++++||+++|||||||+|++
T Consensus 226 ~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV 305 (628)
T COG0296 226 AGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAV 305 (628)
T ss_pred cCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehh
Confidence 99999999999999984 6777887666543 22222 233333 445599999999999999999999999999998
Q ss_pred ccccccc-c---cccCCc----hhHHHHHHc--------CccccccEEEeecCCCCCCCCCCCCCCcccchhhhhhHHHH
Q 047308 545 SSLLRGF-H---GEYLSR----PPLIEAIAF--------DPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCN 608 (878)
Q Consensus 545 ~~l~~~~-~---~~~~~~----~~~~~~ia~--------d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~d 608 (878)
..|+... . .++..+ .+.+++++. ....++++.|+|.|.....-.......+......||++++.
T Consensus 306 ~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~ 385 (628)
T COG0296 306 ASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMH 385 (628)
T ss_pred hhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHh
Confidence 8765422 1 111111 123344432 23345778999999864432111111111223678888877
Q ss_pred HHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCC--CccccccccCCCCCCcccccCCCCCCCCchHHH
Q 047308 609 DVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGL--PLVDLVSFSGGGLASELSWNCGEEGPTTKTAVL 686 (878)
Q Consensus 609 ~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~--tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~ 686 (878)
+...++........... ....|..-..+...+.|+.+||.. .-..+. ..++|. .
T Consensus 386 D~~~y~~~~~~~r~~~h----~~~tf~~~y~~se~~~l~~sHDevvhGk~sl~--------------~rm~g~------~ 441 (628)
T COG0296 386 DTLFYFGKDPVYRKYHH----GELTFGLLYAFSENVVLPLSHDEVVHGKRSLG--------------ERMPGD------A 441 (628)
T ss_pred hHHHhcccCcccccccc----CCCccccccccceeEeccccccceeecccchh--------------ccCCcc------h
Confidence 77777655433211111 011121111245567788899854 111110 011221 1
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCcccccc----CCCccHHHHHHHHHHHHhhccCCc
Q 047308 687 ERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALAT----GFGIQITEFISFLSSFRLKRKENI 762 (878)
Q Consensus 687 ~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~----~~~~~l~~f~k~Li~LRk~~~~~i 762 (878)
..+.+.+|+++++++++||+|+||||+|||... .|..-..++|..+.. ...+++..|.+.|.++.+... ..
T Consensus 442 ~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~----e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~-~l 516 (628)
T COG0296 442 WQKFANLRALAAYMWLHPGKPLLFMGEEFGQGR----EWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPD-PL 516 (628)
T ss_pred hhhHHHHHHHHHHHHhCCCceeeecchhhccCC----CCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCC-cc
Confidence 234567999999999999999999999999987 344567788865543 235778888888886655541 00
Q ss_pred cccCCCCCCCCccC---CCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcE-EEEcCCCCCCCeEEEEccCCC
Q 047308 763 DWHGSDHSPPRWED---PDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSE-SVVLPPPPEGMTWHHLVDTAL 838 (878)
Q Consensus 763 ~~~g~~~~~~~~~~---~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~-~~~Lp~~~~g~~W~~l~dt~~ 838 (878)
.-.....+...|.+ .+.++++|.|.... ...+.++++.|++.... .+.++.+ .++.|+++++|+.
T Consensus 517 ~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~----------~~~~~lv~~~n~~~~~~~~y~~~~~-~~g~~~~~lntd~ 585 (628)
T COG0296 517 HEQDFQPEGFEWIDADDAENSVLAFYRRLLA----------LRHEHLVVVNNFTPVPRVDYRVGVP-VAGRWREVLNTDL 585 (628)
T ss_pred chhhhcccCCceeecCchhhhHHHHHHHHhh----------cCCceEEEEeCCCCCcccccccCCc-ccccEEEeccchH
Confidence 00111123345654 23469999996321 13566889999998754 3444443 5678999999976
Q ss_pred CC-CCCccCCCCc-ee-e-----ecCceEEEEEcCcEEEEEE
Q 047308 839 PF-PGFFSTEGKP-VL-E-----QMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 839 ~~-~~~~~~~~~~-~~-~-----~~~~~~~~~vp~~S~~Vl~ 872 (878)
.. .+.-...... +. + ...-..++++||.+++||.
T Consensus 586 ~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 586 AEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred HHhcCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 43 2211110000 10 0 1122567899999999986
No 19
>PLN02960 alpha-amylase
Probab=100.00 E-value=5.7e-60 Score=556.63 Aligned_cols=513 Identities=16% Similarity=0.179 Sum_probs=337.9
Q ss_pred ccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCccccceeecCccccccccCCCCCCCCCCCCCcccccc-c---CCC
Q 047308 286 INRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLC-K---EPD 361 (878)
Q Consensus 286 ~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~ 361 (878)
.+..+|.|+..||++.+|..|+|+|+.. +| .....||||+++.... .+.. .+.+. + .+.
T Consensus 320 ~k~~~gw~~~~ip~~~hG~~Yky~v~~~----~g-----~~~~vdpyA~~~qp~~---~~~~-----~~~v~~d~~~~~~ 382 (897)
T PLN02960 320 RKGRKAWLKKYIPAIPHGSKYRVYFNTP----DG-----PLERVPAWATYVLPDP---DGKQ-----WYAIHWEPPPEEA 382 (897)
T ss_pred eecCCcEEEEEccCCCCCCEEEEEEEeC----CC-----ceEECCCcceeEeecC---CCcc-----ceEEEeCCCCCCC
Confidence 5677789999999999999999999864 22 2456899999885321 1110 01222 2 246
Q ss_pred CCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHH-HHHHHhcCCCeEEEccCcccCC-CCCCCCCC
Q 047308 362 FDWGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEK-VHHLKDLGVNAILLEPILSFDE-QKGPYFPR 439 (878)
Q Consensus 362 ~~W~~~~~~~~~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~k-LdyLk~LGvt~I~L~PI~~~~~-~~~gY~~~ 439 (878)
|+|+++.+ . .++++||||+||+.|+... ..|||++++++ |+|||+|||||||||||+++.. ..|||++.
T Consensus 383 y~W~~~~p-~-~~~~~vIYElHvg~~~~e~-------~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~ 453 (897)
T PLN02960 383 YKWKFERP-K-VPKSLRIYECHVGISGSEP-------KISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVT 453 (897)
T ss_pred CCCCCCCC-C-CCCCcEEEEEecccccCCC-------CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc
Confidence 99987642 2 4588999999999987532 46999999977 9999999999999999999854 34799999
Q ss_pred CCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC---cCCCCCCCC--CccccCC---CCCCcccc
Q 047308 440 HFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG---ALQGIDDSS--YYYAHRG---EGIETTNV 511 (878)
Q Consensus 440 ~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~---~~~~~d~~~--yY~~~~~---~~~~~~~d 511 (878)
+||+|+++||++ +|||+||++||++||+||||||+||++.+ .+..+++.. ||+.+.. ..|++ ..
T Consensus 454 ~yfa~~~~yGtp-------~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~-~~ 525 (897)
T PLN02960 454 NFFAVSSRFGTP-------DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGT-RM 525 (897)
T ss_pred cCCCcccccCCH-------HHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCC-cc
Confidence 999999999976 99999999999999999999999999985 344555532 4443221 23443 56
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCccccccccc---------cc----CC--chhHHHHHHc--Ccccccc
Q 047308 512 LNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHG---------EY----LS--RPPLIEAIAF--DPLLSKA 574 (878)
Q Consensus 512 ln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~---------~~----~~--~~~~~~~ia~--d~~~~~~ 574 (878)
||+++++||+||+++++||++||||||||||++..|+.-.++ ++ .+ ...+++.+.. ....+++
T Consensus 526 fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~v 605 (897)
T PLN02960 526 FKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNI 605 (897)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCe
Confidence 899999999999999999999999999999998765431111 11 11 1123333321 3445789
Q ss_pred EEEeecCCCCCCC-----CCCCCCCcccchhhhhhHHHHHHHHHHhcCCcHHH-HHHHHcCCCcccCCCCCCceeeeeec
Q 047308 575 KLIADYWDPHGVA-----PKDTRFPHWKRWAELNTNFCNDVRNFFRGEGLLSD-LATRLCGSGDIFSDGRGPAFSFNYIA 648 (878)
Q Consensus 575 ~ligE~w~~~~~~-----~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~-~~~~l~~s~~~f~~~~~~~~~inyi~ 648 (878)
++|||.....+.. .++.+| ...||+++.+++..+++.... .+ ....+.++... +...+...++|++
T Consensus 606 ilIAEdss~~P~vt~P~~~GGLGF-----DYkwnmG~~~d~l~~l~~~~~-r~~~~~~l~~s~~~--~~~~~~~~v~Y~E 677 (897)
T PLN02960 606 ITIAEDATFYPGLCEPTSQGGLGF-----DYYVNLSPSEMWLSLLENVPD-QEWSMSKIVSTLVK--NKENADKMLSYAE 677 (897)
T ss_pred EEEEECCCCCCCccccCCCCCCCc-----ccccCCCcHHHHHHHHHhCcC-CCCChhccEeeecc--CcCCcceEEEEec
Confidence 9999977643322 222334 367888888888888875321 00 00122222110 1134667899999
Q ss_pred cCCCC-----CccccccccCCCCCCcccccCCCCCCCCchHHHH--HHHHHHHHHHHHHHhcCCceeEecchhccccCCC
Q 047308 649 RNTGL-----PLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLE--RRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWG 721 (878)
Q Consensus 649 ~HD~~-----tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~--~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g 721 (878)
|||.. ++.+.+.-.. |...+ ......+. ...+++++ +++++ .||+||+|||+|||+....
T Consensus 678 nHDQVv~Gkrsl~~rL~g~~--------~~k~~---~~~~~~lRa~al~~~~rl-lt~~~-~Pg~pLlFMG~EFGh~e~~ 744 (897)
T PLN02960 678 NHNQSISGGKSFAEILLGKN--------KESSP---AVKELLLRGVSLHKMIRL-ITFTL-GGSAYLNFMGNEFGHPERV 744 (897)
T ss_pred CcCccccCcccHHHHCCCch--------hhhhc---ccChhhhhhhhHHHHHHH-HHHHh-CCCCCEeeCccccCChhhh
Confidence 99962 2222221000 00000 00000000 01123333 34444 4899999999999985421
Q ss_pred ------CCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccc
Q 047308 722 ------SPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQL 795 (878)
Q Consensus 722 ------~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~ 795 (878)
++...+...++|+.++.+.+..+++|+|.|++||+++ +. .+.+ ..+ ....+..++||+|.|.
T Consensus 745 ~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~-pa-L~~g-~~~-i~~~d~~~~Viaf~R~-------- 812 (897)
T PLN02960 745 EFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKY-LI-LSRG-LPN-IHHVNDTSMVISFTRG-------- 812 (897)
T ss_pred hCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcC-hh-hcCC-cce-eeeecCCCCEEEEEeC--------
Confidence 1222245679999988777889999999999999997 11 1111 111 1122556789999992
Q ss_pred cccCCCCCCeEEEEEeCCCCc--EEEEcCCCCCCCeEEEEccCCCCC-CCCccC-CCC-c------eeeecCceEEEEEc
Q 047308 796 SSESSQTKGDLYIACNAADHS--ESVVLPPPPEGMTWHHLVDTALPF-PGFFST-EGK-P------VLEQMAGLYTYEMK 864 (878)
Q Consensus 796 ~~~~~~~~~~llVv~N~s~~~--~~~~Lp~~~~g~~W~~l~dt~~~~-~~~~~~-~~~-~------~~~~~~~~~~~~vp 864 (878)
.++||+|+++.. ..+.+ .+|..+.|++++||+... +|.-.. ... . ........++++||
T Consensus 813 ---------~llvV~NFsp~~~~~~Y~v-gvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~LP 882 (897)
T PLN02960 813 ---------PLLFAFNFHPTNSYEEYEV-GVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLP 882 (897)
T ss_pred ---------CeEEEEeCCCCCcCcCceE-CCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEEeC
Confidence 389999999852 23344 334456999999998753 332111 110 0 01223456889999
Q ss_pred CcEEEEEEEcc
Q 047308 865 PYSCTLFEASN 875 (878)
Q Consensus 865 ~~S~~Vl~~~~ 875 (878)
|+|++||...+
T Consensus 883 p~sa~v~k~~~ 893 (897)
T PLN02960 883 SRSAQVYKLAR 893 (897)
T ss_pred CCEEEEEEEee
Confidence 99999998754
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.1e-58 Score=547.61 Aligned_cols=485 Identities=18% Similarity=0.243 Sum_probs=318.9
Q ss_pred eEEEEEEcCCC---CeEEEEEecCCCCCCCceeeccCccccC-CCCEEEEEEcCC--CCCceeEEEECCCcCCCCCCccc
Q 047308 250 SLNFAIFSRHA---QGVVLCLYDDTTADRPALELDLDPYINR-SGDIWHASMEST--WNFVSYGYRFKGSFSQGDGYKSH 323 (878)
Q Consensus 250 ~v~F~vwaP~A---~~V~l~l~~~~~~~~~~~~~~l~~~~~~-~~gvW~v~i~~~--~~g~~Y~y~i~~~~~~~~g~~~~ 323 (878)
.+.++|+.+.. ++|.|....+ ++. ..++|.+.... ...+|+++++.. .....|.|++... +
T Consensus 20 ~~~~~lr~~~~~~~~~v~l~~~~~--~~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~-----~---- 86 (598)
T PRK10785 20 QLLITLWLTGEDPPQRVMLRCEPD--NEE--YLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH-----D---- 86 (598)
T ss_pred EEEEEEEEcCCCceEEEEEEEEcC--CCE--EEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC-----C----
Confidence 58999998754 4666654322 211 24455432211 224799999753 3456788888543 1
Q ss_pred cceeecCccccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCC-CCcEEEEEecccccCCCCCCCC------
Q 047308 324 LESVLLDPYAKIIVNSIPNHHDLGLPPKYLGRLCKEPDFDWGGDVHLNLPM-EKLVVYRLNVMRFSEHKSSKLP------ 396 (878)
Q Consensus 324 ~~~~~~DPyA~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~d~VIYevhv~~Ft~~~~s~~~------ 396 (878)
.....+- ..+.. .. +. ....|.+... ...+.| +++|||||+|++|.++++++.+
T Consensus 87 -~~~~~~~--~g~~~--------~~-~~------~~~~f~~~~~-~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~ 147 (598)
T PRK10785 87 -RQRWFTP--QGFSR--------RP-PA------RLEQFAVDVP-DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYY 147 (598)
T ss_pred -EEEEEcC--Cceee--------cc-CC------CccceEeeCC-CCCCchhhcCEEEEechhhhcCCCcccCccCCcee
Confidence 1122111 01000 00 00 0011222111 122234 9999999999999988764321
Q ss_pred ------------------------CCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC
Q 047308 397 ------------------------PDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR 452 (878)
Q Consensus 397 ------------------------~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~ 452 (878)
..++|||+||++||||||+||||+|||+|||+++.. +||++.||++++++||+.
T Consensus 148 ~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~-hgYd~~Dy~~iDp~~Gt~- 225 (598)
T PRK10785 148 HHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSV-HKYDTEDYRHVDPQLGGD- 225 (598)
T ss_pred eccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCC-CCcCcccccccCcccCCH-
Confidence 245899999999999999999999999999998765 579999999999999976
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc--CCC-----------CCC--CCCccccC------CCCCCcccc
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA--LQG-----------IDD--SSYYYAHR------GEGIETTNV 511 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~--~~~-----------~d~--~~yY~~~~------~~~~~~~~d 511 (878)
++||+||++||++||+||||+|+||++..+ |.. .+. .+||...+ +.+...+|+
T Consensus 226 ------~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPd 299 (598)
T PRK10785 226 ------AALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPK 299 (598)
T ss_pred ------HHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcc
Confidence 999999999999999999999999999852 111 111 23554332 223456799
Q ss_pred cCCCCHHHHHHHHH----HHHHHHHh-cCccEEEEccCcccccccccccCCchhHHHHHH--cCccccccEEEeecCCCC
Q 047308 512 LNCNYPTVQQMILN----SLRHWVTE-FHIDGFCFINASSLLRGFHGEYLSRPPLIEAIA--FDPLLSKAKLIADYWDPH 584 (878)
Q Consensus 512 ln~~~p~Vr~~iid----~l~~Wl~e-~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia--~d~~~~~~~ligE~w~~~ 584 (878)
||++||+||++|++ +++||+++ |||||||+|+|.++..... ......+++++. .+...+++++|||.|...
T Consensus 300 LN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~--~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~ 377 (598)
T PRK10785 300 LDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGG--ARNNLQHVAGITQAAKEENPEAYVLGEHFGDA 377 (598)
T ss_pred ccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccC--ccccHHHHHHHHHHHHhhCCCeEEEEeccCCh
Confidence 99999999999995 89999986 9999999999988754210 111223444332 133456899999999754
Q ss_pred CCCCCCCCCCcccchhhhhh-HHHHHHHHHHhcCC--------cHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCc
Q 047308 585 GVAPKDTRFPHWKRWAELNT-NFCNDVRNFFRGEG--------LLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPL 655 (878)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~n~-~f~d~ir~~l~g~~--------~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL 655 (878)
........+ .+.||+ .|...++.++.+.. ...++...+......++. ......+||++|||..++
T Consensus 378 ~~~l~~~~~-----d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~n~l~nHD~~R~ 451 (598)
T PRK10785 378 RQWLQADVE-----DAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPH-QQQLRQFNQLDSHDTARF 451 (598)
T ss_pred hhhccCccc-----cccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCH-HHHHHhhhccCCCccchh
Confidence 332222222 244564 57777888876531 223333333221111210 011235799999998765
Q ss_pred cccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccc
Q 047308 656 VDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNA 735 (878)
Q Consensus 656 ~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~ 735 (878)
..++. . ..+++|+|++++||+||+||||||||+||++..++ .+|.+|+|+.
T Consensus 452 ~~~~~---------------~------------~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~dp--~~R~~m~W~~ 502 (598)
T PRK10785 452 KTLLG---------------G------------DKARMPLALVWLFTWPGVPCIYYGDEVGLDGGNDP--FCRKPFPWDE 502 (598)
T ss_pred hhhhC---------------C------------CHHHHHHHHHHHHhCCCCcEEEeeeeccccCCCCC--CccCCcCCCc
Confidence 43321 0 02368899999999999999999999999876544 5799999986
Q ss_pred cccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCC
Q 047308 736 LATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADH 815 (878)
Q Consensus 736 ~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~ 815 (878)
.. ...++++|+|+||+|||++ +.+ ..|. . .+...++.+++|.|... ++.++|++|.+ +
T Consensus 503 ~~--~~~~l~~~~r~Li~lRk~~-~aL-~~G~---~-~~l~~~~~v~af~R~~~-------------~~~vlVviN~s-~ 560 (598)
T PRK10785 503 AK--QDGALLALYQRMIALRKKS-QAL-RRGG---C-QVLYAEGNVVVFARVLQ-------------QQRVLVAINRG-E 560 (598)
T ss_pred cc--CchHHHHHHHHHHHHHhhC-ccc-ccCc---E-EEEEeCCCEEEEEEECC-------------CCEEEEEEECC-C
Confidence 53 2468999999999999998 111 1121 1 11122457999999753 67899999999 7
Q ss_pred cEEEEcCC--CCCCCeEEEE
Q 047308 816 SESVVLPP--PPEGMTWHHL 833 (878)
Q Consensus 816 ~~~~~Lp~--~~~g~~W~~l 833 (878)
.+++.||. ...++.|...
T Consensus 561 ~~~v~lp~~~~~~~~~~~~~ 580 (598)
T PRK10785 561 ACEVVLPASPLLNVAQWQRK 580 (598)
T ss_pred CeEEecccccccCCcceeec
Confidence 78888875 2234455543
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=3.7e-54 Score=507.25 Aligned_cols=453 Identities=18% Similarity=0.179 Sum_probs=286.9
Q ss_pred CCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC
Q 047308 373 PMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR 452 (878)
Q Consensus 373 ~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~ 452 (878)
+|+++|||||+|++|++++. +.+|||+||++||||||+||||+|||+||++++...+||++.|||+++++||+.
T Consensus 2 W~~~~viYqi~~~~f~d~~~-----~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~- 75 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNG-----DGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTI- 75 (539)
T ss_pred ccccceEEEEehhHhhcCCC-----CCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCH-
Confidence 37899999999999998763 357999999999999999999999999999988766899999999999999965
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc--C----CCCCC--CCCccccC-------------------C--
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA--L----QGIDD--SSYYYAHR-------------------G-- 503 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~--~----~~~d~--~~yY~~~~-------------------~-- 503 (878)
+|||+||++||++||+||||+|+||++.+. + ...++ .+||.+.+ +
T Consensus 76 ------~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 149 (539)
T TIGR02456 76 ------DDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTF 149 (539)
T ss_pred ------HHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccc
Confidence 999999999999999999999999999852 2 11111 34553211 0
Q ss_pred ----------CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCc---hhHHHHHHc--C
Q 047308 504 ----------EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSR---PPLIEAIAF--D 568 (878)
Q Consensus 504 ----------~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~---~~~~~~ia~--d 568 (878)
.+...+++||+++|+||++|+++++||+ ++||||||||+++++.+......... ..+++.+.. +
T Consensus 150 ~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~ 228 (539)
T TIGR02456 150 DPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVD 228 (539)
T ss_pred cCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHH
Confidence 0123578999999999999999999999 59999999999998754322211111 123333311 2
Q ss_pred ccccccEEEeecCCCCCCCCCCC-CCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeee
Q 047308 569 PLLSKAKLIADYWDPHGVAPKDT-RFPHWKRWAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYI 647 (878)
Q Consensus 569 ~~~~~~~ligE~w~~~~~~~~~~-~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi 647 (878)
...+++++|||.|.......... ........+.+|+.+...+...+... ....+...+.... .+. ......+|+
T Consensus 229 ~~~p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~-~~~~l~~~l~~~~-~~~---~~~~~~~fl 303 (539)
T TIGR02456 229 REYPGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRRE-DRSPIIDILKETP-DIP---DSCQWCIFL 303 (539)
T ss_pred HhCCCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccC-CHHHHHHHHHHhh-hcc---CCCceeeec
Confidence 23468899999754211100000 00000112345555544433322221 1222322222111 121 133457899
Q ss_pred ccCCCCCccccccccCCCCCCcccccCCCC---CC-CCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCC--
Q 047308 648 ARNTGLPLVDLVSFSGGGLASELSWNCGEE---GP-TTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWG-- 721 (878)
Q Consensus 648 ~~HD~~tL~D~v~~~~~~~~~~~swn~g~~---G~-t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g-- 721 (878)
+|||..++.-+...........+..+.... +. .+-........+++++|++++||+||+|+||||||+||.+..
T Consensus 304 ~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~ 383 (539)
T TIGR02456 304 RNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWL 383 (539)
T ss_pred CCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCcc
Confidence 999986532110000000000000000000 00 000000111134688999999999999999999999998631
Q ss_pred CCCCCCCCCCCcccccc--------------------------------CCCccHHHHHHHHHHHHhhccCCccccCCCC
Q 047308 722 SPSYADRKPFDWNALAT--------------------------------GFGIQITEFISFLSSFRLKRKENIDWHGSDH 769 (878)
Q Consensus 722 ~n~y~~r~~~~W~~~~~--------------------------------~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~ 769 (878)
......|.+|+|+.... ....++++|+|+||+||+++ .....|.
T Consensus 384 ~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~--~aL~~G~-- 459 (539)
T TIGR02456 384 GDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAH--PAFGRGS-- 459 (539)
T ss_pred CCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcC--cccccCc--
Confidence 11224588999986310 12467999999999999987 1222222
Q ss_pred CCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCC-CCCeEEEEccCCCCCCCCccCCC
Q 047308 770 SPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPP-EGMTWHHLVDTALPFPGFFSTEG 848 (878)
Q Consensus 770 ~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~-~g~~W~~l~dt~~~~~~~~~~~~ 848 (878)
.......++++++|.|..+ ++.++|++|++.+++++.|+... .+..|.+++.+...
T Consensus 460 -~~~l~~~~~~v~~f~R~~~-------------~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~--------- 516 (539)
T TIGR02456 460 -LTFLPTGNRRVLAFLREYE-------------GERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPF--------- 516 (539)
T ss_pred -eEEEecCCCCEEEEEEEcC-------------CcEEEEEEeCCCCCEEeeccccccccCcceecccCCcc---------
Confidence 1111112347999999764 57899999999999999997643 23356666643321
Q ss_pred CceeeecCceEEEEEcCcEEEEEEE
Q 047308 849 KPVLEQMAGLYTYEMKPYSCTLFEA 873 (878)
Q Consensus 849 ~~~~~~~~~~~~~~vp~~S~~Vl~~ 873 (878)
.....+..+++|+|+++++|..
T Consensus 517 ---~~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 517 ---PPVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred ---ccccCCcceEEECCceEEEEEe
Confidence 0011223678999999999873
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.8e-53 Score=500.52 Aligned_cols=424 Identities=18% Similarity=0.245 Sum_probs=283.3
Q ss_pred CCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC
Q 047308 373 PMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR 452 (878)
Q Consensus 373 ~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~ 452 (878)
+|+++|||||+|++|++++. +..|||+||++||+|||+||||+|||+||++++..++||++.|||+++++||+.
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~-----~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~- 74 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTG-----DGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTM- 74 (543)
T ss_pred CcccCEEEEEEhHHHhcCCC-----CCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCH-
Confidence 37899999999999998663 457999999999999999999999999999998777799999999999999975
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc--CCCC---CC--CCCccccC-C----C----------------
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA--LQGI---DD--SSYYYAHR-G----E---------------- 504 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~--~~~~---d~--~~yY~~~~-~----~---------------- 504 (878)
++||+||++||++||+||||+|+||++.++ ++.. +. .+||.+.+ . .
T Consensus 75 ------~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~ 148 (543)
T TIGR02403 75 ------ADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGD 148 (543)
T ss_pred ------HHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCC
Confidence 999999999999999999999999999752 2110 21 24443221 0 0
Q ss_pred --------CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCccccccc--ccc--------cCCc---hhHHH
Q 047308 505 --------GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGF--HGE--------YLSR---PPLIE 563 (878)
Q Consensus 505 --------~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~--~~~--------~~~~---~~~~~ 563 (878)
+...+++||++||+||++|+++++||+ ++||||||||+|+++.... .+. +.+. ..+++
T Consensus 149 ~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 227 (543)
T TIGR02403 149 TGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQ 227 (543)
T ss_pred CCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHH
Confidence 012468999999999999999999999 6899999999999986432 110 0111 23455
Q ss_pred HHHc--CccccccEEEeecCCCCCCCCCCCCCC-cccchhhhhhHHHHHHHHHHhcCC------cHHHHHHHHcCCCccc
Q 047308 564 AIAF--DPLLSKAKLIADYWDPHGVAPKDTRFP-HWKRWAELNTNFCNDVRNFFRGEG------LLSDLATRLCGSGDIF 634 (878)
Q Consensus 564 ~ia~--d~~~~~~~ligE~w~~~~~~~~~~~~~-~~~~~~~~n~~f~d~ir~~l~g~~------~~~~~~~~l~~s~~~f 634 (878)
++.. .. .++++++||.|............. .....+.|| |......+..+.. ....+...+......+
T Consensus 228 ~~~~~~~~-~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (543)
T TIGR02403 228 EMNQEVFG-DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGM 304 (543)
T ss_pred HHHHHhhc-cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEC--hhhhhchhccccccccCCCCHHHHHHHHHHHHHhc
Confidence 5422 22 457899999997422110000000 000112233 3333334433321 1222322222111111
Q ss_pred CCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchh
Q 047308 635 SDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDE 714 (878)
Q Consensus 635 ~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE 714 (878)
. .......+|++|||..++...+ |... ..+.+.+|++++++||+||+||||||||
T Consensus 305 ~--~~~~~~~~fl~NHD~~R~~s~~---------------g~~~--------~~~~~~~k~~a~ll~tlpG~P~IYYGdE 359 (543)
T TIGR02403 305 Q--AGGGWNALFWNNHDQPRAVSRF---------------GDDG--------EYRVESAKMLAAAIHLLRGTPYIYQGEE 359 (543)
T ss_pred c--ccCcceeeecCCCChhhHHHhc---------------CCch--------hhHHHHHHHHHHHHHHCCCCeEEEeccc
Confidence 1 0123456799999976543322 1100 1122357788889999999999999999
Q ss_pred ccccCCCCC----------------------------------C-CCCCCCCCcccccc---------------------
Q 047308 715 CGQSSWGSP----------------------------------S-YADRKPFDWNALAT--------------------- 738 (878)
Q Consensus 715 ~G~~~~g~n----------------------------------~-y~~r~~~~W~~~~~--------------------- 738 (878)
+||++.... + -..|.||+|+....
T Consensus 360 iGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv 439 (543)
T TIGR02403 360 IGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINV 439 (543)
T ss_pred cCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCH
Confidence 999874210 0 03589999986421
Q ss_pred ----CCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCC
Q 047308 739 ----GFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAAD 814 (878)
Q Consensus 739 ----~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~ 814 (878)
....++++|+|+||+|||++ +.+ .+|. .........++++|.|..+ ++.++|++|++.
T Consensus 440 ~~q~~~~~Sll~~yr~Li~lRk~~-~aL-~~G~---~~~~~~~~~~v~a~~R~~~-------------~~~~lVv~N~s~ 501 (543)
T TIGR02403 440 EKALADDNSIFYFYQKLIALRKSE-PVI-TDGD---YQFLLPDDPSVWAYTRTYK-------------NQKLLVINNFYG 501 (543)
T ss_pred HHHhhCCccHHHHHHHHHHHHhhc-ccc-cCcc---EEEeecCCCcEEEEEEEcC-------------CcEEEEEEECCC
Confidence 12478999999999999987 122 2222 1111112347999999764 578999999999
Q ss_pred CcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 815 HSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 815 ~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
+.+++.||... ..|+.++.+.... . . ...++|||++.+|+.
T Consensus 502 ~~~~~~l~~~~--~~~~~~~~~~~~~--------~-----~--~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 502 EEKTIELPLDL--LSGKILLSNYEEA--------E-----K--DAKLELKPYEAIVLL 542 (543)
T ss_pred CCeEeeCCccC--cCceEEEecCCCc--------C-----C--CCcEEECCceEEEEe
Confidence 99999998653 3466777664211 0 1 146889999999985
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=4.8e-53 Score=496.39 Aligned_cols=427 Identities=15% Similarity=0.212 Sum_probs=285.3
Q ss_pred CCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC
Q 047308 373 PMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR 452 (878)
Q Consensus 373 ~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~ 452 (878)
+|+++|||||+|++|++++. +..|||+||+++|||||+||||+|||+||++++...+||++.|||+++++||+.
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~-----~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~- 80 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTG-----SGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTL- 80 (551)
T ss_pred hhhcCeEEEEEchHhhcCCC-----CCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCH-
Confidence 58999999999999998763 357999999999999999999999999999887767799999999999999975
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc--CCCC---CC--CCCccccC------CC---------------
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA--LQGI---DD--SSYYYAHR------GE--------------- 504 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~--~~~~---d~--~~yY~~~~------~~--------------- 504 (878)
+|||+||++||++||+||||+|+||++..+ +... +. .+||.+.+ ..
T Consensus 81 ------~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~ 154 (551)
T PRK10933 81 ------DDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHA 154 (551)
T ss_pred ------HHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccC
Confidence 999999999999999999999999999852 2111 11 23443211 00
Q ss_pred ---------CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccc--ccccc--------CC---chhHH
Q 047308 505 ---------GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRG--FHGEY--------LS---RPPLI 562 (878)
Q Consensus 505 ---------~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~--~~~~~--------~~---~~~~~ 562 (878)
+...+++||++||+||++|+++++||+ ++||||||||+|+++... +++.. .. ...++
T Consensus 155 ~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (551)
T PRK10933 155 ESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFL 233 (551)
T ss_pred CCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHH
Confidence 012478999999999999999999999 799999999999998764 33211 00 12345
Q ss_pred HHHHcCc-cccccEEEeecCCCCCCCCCC-CCCCcccchhhhhhHHHHHHHHHHhcCC------cHHHHHHHHcCCCccc
Q 047308 563 EAIAFDP-LLSKAKLIADYWDPHGVAPKD-TRFPHWKRWAELNTNFCNDVRNFFRGEG------LLSDLATRLCGSGDIF 634 (878)
Q Consensus 563 ~~ia~d~-~~~~~~ligE~w~~~~~~~~~-~~~~~~~~~~~~n~~f~d~ir~~l~g~~------~~~~~~~~l~~s~~~f 634 (878)
+.+...- ...+++++||.|......... ....+.. ..+.+.|......++.+.. ...++...+.......
T Consensus 234 ~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~--~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (551)
T PRK10933 234 QEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSE--LSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGM 311 (551)
T ss_pred HHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCe--eeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhh
Confidence 5553221 112578999998632110000 0000000 1122333333444444421 1122222221100001
Q ss_pred CCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchh
Q 047308 635 SDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDE 714 (878)
Q Consensus 635 ~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE 714 (878)
.......+|++|||..++.... |.. ...+...++++++++||+||+|+||||||
T Consensus 312 ---~~~~~~~~fl~NHD~~R~~sr~---------------g~~--------~~~~~~~aklla~ll~tlpG~P~IYyGeE 365 (551)
T PRK10933 312 ---HNVAWNALFWCNHDQPRIVSRF---------------GDE--------GEYRVPAAKMLAMVLHGMQGTPYIYQGEE 365 (551)
T ss_pred ---cccCeeccccCCCCcccHHHHc---------------CCc--------hhHHHHHHHHHHHHHHhCCCceEEEeecc
Confidence 0123456789999976643322 111 02234457888899999999999999999
Q ss_pred ccccCCCC------------C-----------------------CCCCCCCCCcccccc---------------------
Q 047308 715 CGQSSWGS------------P-----------------------SYADRKPFDWNALAT--------------------- 738 (878)
Q Consensus 715 ~G~~~~g~------------n-----------------------~y~~r~~~~W~~~~~--------------------- 738 (878)
+||++..- + .-..|.||+|+....
T Consensus 366 iGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv 445 (551)
T PRK10933 366 IGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINV 445 (551)
T ss_pred cCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccH
Confidence 99987310 0 012589999987531
Q ss_pred ----CCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCC
Q 047308 739 ----GFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAAD 814 (878)
Q Consensus 739 ----~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~ 814 (878)
....++++|+|+||+|||++ +.+ ..|. ..........+++|.|... ++.++||+|++.
T Consensus 446 ~~Q~~~~~Sll~~yk~Li~lRk~~-~aL-~~G~---~~~~~~~~~~v~af~R~~~-------------~~~~lvv~N~s~ 507 (551)
T PRK10933 446 EAALADEDSVFYTYQKLIALRKQE-PVL-TWGD---YQDLLPNHPSLWCYRREWQ-------------GQTLLVIANLSR 507 (551)
T ss_pred HHHhcCcccHHHHHHHHHHHhhcC-hhh-ccce---eEEeccCCCcEEEEEEEcC-------------CcEEEEEEECCC
Confidence 12367999999999999987 222 2222 1111112347999999763 578999999999
Q ss_pred CcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 815 HSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 815 ~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
+++.+.++.. .+.|+.++++.... .. . ...++|+|.+..|+..+
T Consensus 508 ~~~~~~~~~~--~~~~~~~l~~~~~~------------~~-~-~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 508 EPQPWQPGQM--RGNWQLLMHNYEEA------------SP-Q-PCAMTLRPFEAVWWLQK 551 (551)
T ss_pred CCeeeecCcc--cCCceEEeecCccc------------cC-C-CCcEEECCCeEEEEEeC
Confidence 9999988732 34688888764210 00 1 13578999999998753
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.2e-50 Score=480.43 Aligned_cols=376 Identities=15% Similarity=0.194 Sum_probs=255.0
Q ss_pred CCCCCcEEEEEecccccCCCCCCCC-------------CCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccC--------
Q 047308 372 LPMEKLVVYRLNVMRFSEHKSSKLP-------------PDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFD-------- 430 (878)
Q Consensus 372 ~~~~d~VIYevhv~~Ft~~~~s~~~-------------~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~-------- 430 (878)
..|+++|||+|++++|.++++++.. .+++|||+||++||||||+||||+|||+||++..
T Consensus 185 ~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~ 264 (683)
T PRK09505 185 FDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGT 264 (683)
T ss_pred hhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccccccccc
Confidence 3578899999999999988865431 2467999999999999999999999999999862
Q ss_pred ------CCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC--------cCCCC----
Q 047308 431 ------EQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG--------ALQGI---- 492 (878)
Q Consensus 431 ------~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~--------~~~~~---- 492 (878)
...+||++.||+.++++||+. +|||+||++||++||+||||+|+||++.. ++..+
T Consensus 265 ~g~~~~~~yhgY~~~D~~~id~~~Gt~-------~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~ 337 (683)
T PRK09505 265 KGDFPHYAYHGYYTLDWTKLDANMGTE-------ADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSG 337 (683)
T ss_pred ccCCCcCCCCCCCccccccCCCCCCCH-------HHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhc
Confidence 133689999999999999975 99999999999999999999999999942 11110
Q ss_pred ------CCCCCcc-----------------c-cC--CCC-------------------------CCcccccCCC------
Q 047308 493 ------DDSSYYY-----------------A-HR--GEG-------------------------IETTNVLNCN------ 515 (878)
Q Consensus 493 ------d~~~yY~-----------------~-~~--~~~-------------------------~~~~~dln~~------ 515 (878)
.+..|+. . +. +.. ...+|+||++
T Consensus 338 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~ 417 (683)
T PRK09505 338 DENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASG 417 (683)
T ss_pred cccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccc
Confidence 0111110 0 00 000 0125667765
Q ss_pred -----------------CHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCch-hHHHHH-HcCcc----cc
Q 047308 516 -----------------YPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRP-PLIEAI-AFDPL----LS 572 (878)
Q Consensus 516 -----------------~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~-~~~~~i-a~d~~----~~ 572 (878)
||+||++|+++++||+++|||||||+|+|+|+..+||.++.... ..+.+. +.++. .+
T Consensus 418 lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~ 497 (683)
T PRK09505 418 LPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDA 497 (683)
T ss_pred cchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 45999999999999999999999999999999999987653211 111111 11221 23
Q ss_pred ccEEEeecCCCCCCCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCC
Q 047308 573 KAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTG 652 (878)
Q Consensus 573 ~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~ 652 (878)
+++|+||.|......... +. ....+.+|+.|...+++.+.....+......+... . .....++|++|||.
T Consensus 498 ~~~~vGEvw~~~~~~~~y--~~-~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~---~----~~~~~l~FLdNHDt 567 (683)
T PRK09505 498 PFWMTGEAWGHGVMKSDY--YR-HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEK---L----QDFNVLSYLSSHDT 567 (683)
T ss_pred CeEEEEEecCCchhhHHH--Hh-hcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhh---c----CccceeecccCCCh
Confidence 579999999753211100 00 11235677777766554433211111211111111 0 12236789999997
Q ss_pred CCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCC---CCCCCCCC
Q 047308 653 LPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWG---SPSYADRK 729 (878)
Q Consensus 653 ~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g---~n~y~~r~ 729 (878)
.++.... +. ..++|+|++++||+||+|+||||||+||++.. ++..+.|.
T Consensus 568 ~Rf~s~~---------------~~-------------~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~ 619 (683)
T PRK09505 568 RLFFEGG---------------QS-------------YAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRS 619 (683)
T ss_pred hhhhhhc---------------Cc-------------hHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccc
Confidence 6543221 00 03578899999999999999999999998642 23235799
Q ss_pred CCCccccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEE
Q 047308 730 PFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIA 809 (878)
Q Consensus 730 ~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv 809 (878)
+|+|+.... ...++++|+|+|++||+++ +.+. .|. .. .. ..+.+++|.|..+ ++.++||
T Consensus 620 ~M~W~~~~~-~~~~Ll~~~kkLi~LRk~~-pAL~-~G~---~~-~l-~~~~~~aF~R~~~-------------~d~vlVv 678 (683)
T PRK09505 620 DMNWQEVSG-KSAALLAHWQKLGQFRARH-PAIG-AGK---QT-TL-SLKQYYAFVREHG-------------DDKVMVV 678 (683)
T ss_pred cCCcccccc-chHHHHHHHHHHHHHHhhC-HHhh-CCc---eE-Ee-ccCCEEEEEEEeC-------------CCEEEEE
Confidence 999986432 2367999999999999998 1111 121 11 11 1357999999763 6889999
Q ss_pred EeCC
Q 047308 810 CNAA 813 (878)
Q Consensus 810 ~N~s 813 (878)
+|..
T Consensus 679 ~~~~ 682 (683)
T PRK09505 679 WAGQ 682 (683)
T ss_pred EeCC
Confidence 9964
No 25
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=4.8e-48 Score=447.04 Aligned_cols=488 Identities=15% Similarity=0.161 Sum_probs=321.2
Q ss_pred ccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCccccceeecCccccccccCCC--CCCCCCCCCCcccccccCCCCC
Q 047308 286 INRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIP--NHHDLGLPPKYLGRLCKEPDFD 363 (878)
Q Consensus 286 ~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPyA~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~ 363 (878)
.+..++.|...++.+.++..|+.++... +|. ...+.++++.+..... ..+++.+.|+ ....|.
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~----~g~-----~~RiPaw~~~~~~~~~~~~~~~~~w~P~------~~~~y~ 389 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTP----DGP-----LERIPAWATYVLPDDDGKQAFAIHWEPP------PEAAHK 389 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcC----CCC-----cccCCCCeeeEEecCCCCceeeeEeCCC------cccCCc
Confidence 4567789999999999999999999765 332 3456778887764311 0012212111 122488
Q ss_pred CCCCCCCCCCCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCC
Q 047308 364 WGGDVHLNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFS 443 (878)
Q Consensus 364 W~~~~~~~~~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa 443 (878)
|++.+++. ...+.|||+||+..+..+ ..|||+.++++ +.+|||
T Consensus 390 ~k~~~p~~--p~~lrIYE~HvGms~~e~-------kv~ty~eF~~~----------------------------vt~fFA 432 (872)
T PLN03244 390 WKNMKPKV--PESLRIYECHVGISGSEP-------KISSFEEFTEK----------------------------VTNFFA 432 (872)
T ss_pred cCCCCCCC--CCCceEEEEEeeecCCCC-------CcccHHHHhhc----------------------------cCcccc
Confidence 98875433 256789999999988754 57999999986 468999
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc---CCCCCCC--CCccccCC---CCCCcccccCCC
Q 047308 444 PTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA---LQGIDDS--SYYYAHRG---EGIETTNVLNCN 515 (878)
Q Consensus 444 ~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~---~~~~d~~--~yY~~~~~---~~~~~~~dln~~ 515 (878)
|+++||++ +|||+||++||++||+||||||+||++.+. +..+++. .||+.+.. ..|++ ..+|++
T Consensus 433 pssRYGTP-------eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs-~~fnyg 504 (872)
T PLN03244 433 ASSRYGTP-------DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGT-RMFKYG 504 (872)
T ss_pred cCcccCCH-------HHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCC-ceecCC
Confidence 99999976 999999999999999999999999999853 4445532 35554321 23555 679999
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccc--------c-----CCc--hhHHHHH--HcCccccccEEEe
Q 047308 516 YPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGE--------Y-----LSR--PPLIEAI--AFDPLLSKAKLIA 578 (878)
Q Consensus 516 ~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~--------~-----~~~--~~~~~~i--a~d~~~~~~~lig 578 (878)
+++||+||+++++||++||||||||||++..|+.-.++. + .+. ..++..+ ......|++++||
T Consensus 505 ~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIA 584 (872)
T PLN03244 505 DLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIA 584 (872)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEE
Confidence 999999999999999999999999999986555311110 0 111 1122222 1133457899999
Q ss_pred ecCCCCCCC-----CCCCCCCcccchhhhhhHHHHHHHHHHhcCC----cHHHHHHHHcCCCcccCCCCCCceeeeeecc
Q 047308 579 DYWDPHGVA-----PKDTRFPHWKRWAELNTNFCNDVRNFFRGEG----LLSDLATRLCGSGDIFSDGRGPAFSFNYIAR 649 (878)
Q Consensus 579 E~w~~~~~~-----~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~----~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~ 649 (878)
|..+..+.. .++.+| ...||+.+.+....+++... .+..+...|.. +.+.....++|.++
T Consensus 585 EDsS~~P~vt~Pv~~GGLGF-----DYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~~------nrr~~ek~~aYsES 653 (872)
T PLN03244 585 EDATYYPGLCEPTSQGGLGF-----DYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLIA------NKEYADKMLSYAEN 653 (872)
T ss_pred EcCCCCcCccccCCCCCCCc-----cceecCcchHHHHHHHHhCCCcccCHHHHhhhhhc------ccCCcceEEEEecc
Confidence 977643332 233344 46789999999999988642 23344333321 11335578999999
Q ss_pred CCCCCccccccccCCCCCCcccccCCCC--CCCCchHHHHHHHHHHHHHHHHHHhcCCce-eEecchhccccCCCC----
Q 047308 650 NTGLPLVDLVSFSGGGLASELSWNCGEE--GPTTKTAVLERRLKQIRNFLFVLYVSLGVP-ILNMGDECGQSSWGS---- 722 (878)
Q Consensus 650 HD~~tL~D~v~~~~~~~~~~~swn~g~~--G~t~~~~~~~~r~~~~rla~allltspGiP-~Iy~GdE~G~~~~g~---- 722 (878)
||..-..|... ..|..+.+ ..........+..+..|++-+++++++|.| ++|||+|||+..+.+
T Consensus 654 HDqaLvGdKTl---------af~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~ 724 (872)
T PLN03244 654 HNQSISGGRSF---------AEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMP 724 (872)
T ss_pred cceeccccchH---------HhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheecccc
Confidence 99521111100 00111110 011112233444445666666789999988 789999999976421
Q ss_pred -CCC-CCCCCCCccccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCC
Q 047308 723 -PSY-ADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESS 800 (878)
Q Consensus 723 -n~y-~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~ 800 (878)
|.+ .+...++|+.++.+.++.|.+|+|.|++|++++ ...+ .......+.+.+++||||.|.
T Consensus 725 gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~--~aL~--~gf~wI~~~d~e~kVIAF~R~------------- 787 (872)
T PLN03244 725 SNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENE--GILS--RGLPNIHHVKDAAMVISFMRG------------- 787 (872)
T ss_pred CCCccccccccCccccCChhHHHHHHHHHHHHHHHhcC--cccc--cCCcEEeeecCCCCEEEEEec-------------
Confidence 222 223577999987666789999999999999998 1111 111112344667899999993
Q ss_pred CCCCeEEEEEeCCCC-cE-EEEcCCCCCCCeEEEEccCCCCC-CCCccCCCCcee--------eecCceEEEEEcCcEEE
Q 047308 801 QTKGDLYIACNAADH-SE-SVVLPPPPEGMTWHHLVDTALPF-PGFFSTEGKPVL--------EQMAGLYTYEMKPYSCT 869 (878)
Q Consensus 801 ~~~~~llVv~N~s~~-~~-~~~Lp~~~~g~~W~~l~dt~~~~-~~~~~~~~~~~~--------~~~~~~~~~~vp~~S~~ 869 (878)
.++||+||++. +. .+.+ .+|..+.|++++||+... +|.-........ ......+.+.|||+|++
T Consensus 788 ----~LLfVfNF~P~~sy~dYrI-GVp~~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~~gr~~sl~l~LPprsav 862 (872)
T PLN03244 788 ----PFLFIFNFHPSNSYEGYDV-GVEEAGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRIDGLRNCLEVFLPSRTAQ 862 (872)
T ss_pred ----CEEEEEeCCCCCCccCCEE-CCCCCCeEEEEEeCChhhhCCCCccCCCceeecccccccCCCCceEEEEeCCCEEE
Confidence 38999999985 33 3444 455567999999998754 443211111111 12334678999999999
Q ss_pred EEEEcc
Q 047308 870 LFEASN 875 (878)
Q Consensus 870 Vl~~~~ 875 (878)
||...+
T Consensus 863 Vlk~~~ 868 (872)
T PLN03244 863 VYKLSR 868 (872)
T ss_pred EEEEee
Confidence 998753
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.3e-47 Score=446.25 Aligned_cols=378 Identities=15% Similarity=0.183 Sum_probs=258.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCC--CCCCCCCCCCC---------CccCCCCCCCCCcchHHHHHHHHHHHH
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDE--QKGPYFPRHFF---------SPTKLHGPSRGSISAINSMKEMVKKLH 469 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~--~~~gY~~~~yf---------a~d~~yGt~~~~~~~i~elk~LV~~aH 469 (878)
.+|++|++|||||++||||+|||+||+++.+ ..+||++.||| +++++||+. +|||+||++||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~-------~dl~~Li~~~H 91 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK-------EELLNAIDALH 91 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCH-------HHHHHHHHHHH
Confidence 4688999999999999999999999999864 24689999999 689999976 99999999999
Q ss_pred HCCCEEEEEEecccCCCCcC----C-----------------------CCCCC-----------CCccccC--C------
Q 047308 470 ANGIEVLLEVVFTRTADGAL----Q-----------------------GIDDS-----------SYYYAHR--G------ 503 (878)
Q Consensus 470 ~~GI~VILDvV~NH~~~~~~----~-----------------------~~d~~-----------~yY~~~~--~------ 503 (878)
++||+||||+|+||++.+.. . .+..+ .||...+ .
T Consensus 92 ~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (479)
T PRK09441 92 ENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDE 171 (479)
T ss_pred HCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCc
Confidence 99999999999999985311 1 00000 1221111 0
Q ss_pred ----------CCC-------------CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchh
Q 047308 504 ----------EGI-------------ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPP 560 (878)
Q Consensus 504 ----------~~~-------------~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~ 560 (878)
..| ..+++||++||+||++|+++++||++++||||||+|+|+++..+++.++
T Consensus 172 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~----- 246 (479)
T PRK09441 172 SGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEW----- 246 (479)
T ss_pred CceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHH-----
Confidence 011 1267999999999999999999999889999999999999998887643
Q ss_pred HHHHHHcCccccccEEEeecCCCCCCCCCC-CCCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCC
Q 047308 561 LIEAIAFDPLLSKAKLIADYWDPHGVAPKD-TRFPHWKRWAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRG 639 (878)
Q Consensus 561 ~~~~ia~d~~~~~~~ligE~w~~~~~~~~~-~~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~ 639 (878)
.++++.. ..++++++||.|......... ..... .....+++.+...++..+.+.. ..++...+... ... ..
T Consensus 247 -~~~~~~~-~~~~~~~vGE~~~~~~~~~~~y~~~~~-~~~~~~Df~~~~~l~~~~~~~~-~~~l~~~~~~~-~~~---~~ 318 (479)
T PRK09441 247 -IEHVREV-AGKDLFIVGEYWSHDVDKLQDYLEQVE-GKTDLFDVPLHYNFHEASKQGR-DYDMRNIFDGT-LVE---AD 318 (479)
T ss_pred -HHHHHHh-cCCCeEEEEeecCCChHHHHHHHHhcC-CCceEecHHHHHHHHHHHhcCC-ccchHhhhCcc-hhh---cC
Confidence 3444321 124789999999864321100 00000 0113566777777777776532 12222222111 111 23
Q ss_pred CceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcC-CceeEecchhcccc
Q 047308 640 PAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSL-GVPILNMGDECGQS 718 (878)
Q Consensus 640 ~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltsp-GiP~Iy~GdE~G~~ 718 (878)
+...++|++|||..++..+. +. .. .+.+++|++++||+| |+|+||||+|+|+.
T Consensus 319 ~~~~~~FldNHD~~R~~~~~---------------~~---------~~--~~~~~lA~a~llT~p~GiP~IYYGdE~g~~ 372 (479)
T PRK09441 319 PFHAVTFVDNHDTQPGQALE---------------SP---------VE--PWFKPLAYALILLREEGYPCVFYGDYYGAS 372 (479)
T ss_pred cccceeeeccccCCCccccc---------------cc---------cc--ccchHHHHHHHHhCCCCceeeEeccccCCC
Confidence 56679999999977643211 00 00 112578999999999 99999999999997
Q ss_pred CCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEeccccccccccc
Q 047308 719 SWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSE 798 (878)
Q Consensus 719 ~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~ 798 (878)
+..+ ...+++++++|++||++. . .|. ...+. .++++++|.|.++.
T Consensus 373 g~~~------------------~~~l~~~i~~Li~lRk~~----~-~G~---~~~~~-~~~~~~~~~R~~~~-------- 417 (479)
T PRK09441 373 GYYI------------------DMPFKEKLDKLLLARKNF----A-YGE---QTDYF-DHPNCIGWTRSGDE-------- 417 (479)
T ss_pred CCcc------------------cchHHHHHHHHHHHHHHh----C-CCC---eeEee-cCCCEEEEEEecCC--------
Confidence 5321 246899999999999986 1 121 11121 24589999997641
Q ss_pred CCCCCCeEEEEEeCCCC-cEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 799 SSQTKGDLYIACNAADH-SESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 799 ~~~~~~~llVv~N~s~~-~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
..+.++||+|.+.. ..++.++....++.|++++..... . ++...+|..+++|||+|++||+
T Consensus 418 ---~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~---------~-~~~~~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 418 ---ENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQE---------T-VTIDEDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred ---CCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCC---------e-EEECCCCeEEEEECCceEEEeC
Confidence 23568888877654 444777765667788887754321 1 1223456789999999999984
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=8.5e-44 Score=389.51 Aligned_cols=275 Identities=27% Similarity=0.448 Sum_probs=188.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
|||+||++||||||+||||+|||+||++.+...+||++.||++++++||+ .+|||+||++||++||+||||+|
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-------~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGT-------MEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBH-------HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccch-------hhhhhhhhhccccccceEEEeee
Confidence 89999999999999999999999999998766679999999999999995 49999999999999999999999
Q ss_pred cccCCCCc------CCCCC--CCCCccccC-----C---------------------CCCCcccccCCCCHHHHHHHHHH
Q 047308 481 FTRTADGA------LQGID--DSSYYYAHR-----G---------------------EGIETTNVLNCNYPTVQQMILNS 526 (878)
Q Consensus 481 ~NH~~~~~------~~~~d--~~~yY~~~~-----~---------------------~~~~~~~dln~~~p~Vr~~iid~ 526 (878)
+||++.++ +...+ .+.||.+.+ . .++..+++||+++|+||++|+++
T Consensus 74 ~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~ 153 (316)
T PF00128_consen 74 PNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDV 153 (316)
T ss_dssp TSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccc
Confidence 99999852 11111 334544210 0 12345689999999999999999
Q ss_pred HHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCCCCCCcccchh-hhhhH
Q 047308 527 LRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTRFPHWKRWA-ELNTN 605 (878)
Q Consensus 527 l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~-~~n~~ 605 (878)
++||+ ++||||||||+|+++..+++.++ .+++... .++++++||.|................... .++..
T Consensus 154 ~~~w~-~~giDGfR~D~~~~~~~~~~~~~------~~~~~~~--~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (316)
T PF00128_consen 154 LKFWI-EEGIDGFRLDAAKHIPKEFWKEF------RDEVKEE--KPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSVFDFP 224 (316)
T ss_dssp HHHHH-HTTESEEEETTGGGSSHHHHHHH------HHHHHHH--HTTSEEEEEESSSSHHHHHHHHHHGTTSHSEEEHHH
T ss_pred ccchh-hceEeEEEEccccccchhhHHHH------hhhhhhh--ccccceeeeeccCCccccchhhhccccccchhhccc
Confidence 99999 66799999999999998876543 3333221 157899999998643110000000000000 11111
Q ss_pred ---HHHHHHHHHhc-CCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCC
Q 047308 606 ---FCNDVRNFFRG-EGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTT 681 (878)
Q Consensus 606 ---f~d~ir~~l~g-~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~ 681 (878)
+...+...... ......+...+......+. .+...++|++|||..++.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~nHD~~r~~~~~~--------------------- 280 (316)
T PF00128_consen 225 DYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP---DPYRAVNFLENHDTPRFASRFG--------------------- 280 (316)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST---TGGGEEEESSHTTSSTHHHHTT---------------------
T ss_pred ccccccchhhhhccccchhhhhhhhhhhhhhhhc---ccceeeecccccccccchhhhc---------------------
Confidence 12222222222 2223333333322111122 2567899999999876433221
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCC
Q 047308 682 KTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWG 721 (878)
Q Consensus 682 ~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g 721 (878)
....++++|++++||+||+||||||||+|+++..
T Consensus 281 ------~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 281 ------NNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGSK 314 (316)
T ss_dssp ------THHHHHHHHHHHHHHSSSEEEEETTGGGTBBTSS
T ss_pred ------ccchHHHHHHHHHHcCCCccEEEeChhccCCCCC
Confidence 0111688999999999999999999999998754
No 28
>PLN02784 alpha-amylase
Probab=100.00 E-value=7e-38 Score=368.16 Aligned_cols=295 Identities=17% Similarity=0.235 Sum_probs=197.9
Q ss_pred CCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 375 EKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 375 ~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
.....|++.+..|.-... .+ +.=|++|+++|+||++||||+|||+|++++... +||+|.|||+++++||+.
T Consensus 497 ~~~~~~eVmlQgF~Wds~----~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~--- 567 (894)
T PLN02784 497 GTGSGFEILCQGFNWESH----KS-GRWYMELGEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTI--- 567 (894)
T ss_pred cccCCceEEEEeEEcCcC----CC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCH---
Confidence 456688999999984321 11 223899999999999999999999999987654 589999999999999976
Q ss_pred cchHHHHHHHHHHHHHCCCEEEEEEecccCCCCcC--CCCCC--CCCccccC------------------CCCCCccccc
Q 047308 455 ISAINSMKEMVKKLHANGIEVLLEVVFTRTADGAL--QGIDD--SSYYYAHR------------------GEGIETTNVL 512 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~--~~~d~--~~yY~~~~------------------~~~~~~~~dl 512 (878)
+|||+||++||++||+||+|+|+||++.... .+..+ ..++.++. ..++...++|
T Consensus 568 ----~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDL 643 (894)
T PLN02784 568 ----DELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 643 (894)
T ss_pred ----HHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcC
Confidence 9999999999999999999999999975310 00000 00111110 0123456899
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCCCC
Q 047308 513 NCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKDTR 592 (878)
Q Consensus 513 n~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~~~ 592 (878)
|++||.||++|.++++||++++||||||||+|+++...|..+ ++++. . ..+++||.|+......
T Consensus 644 Dh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvke------yv~a~--k----p~F~VGEyWd~~~~~~---- 707 (894)
T PLN02784 644 DHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKD------YMEAS--E----PYFAVGEYWDSLSYTY---- 707 (894)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHH------HHhcc--C----CcEEEEEecccccccc----
Confidence 999999999999999999999999999999998876655332 22221 2 3589999998643211
Q ss_pred CCcccchhhhhhH---HHHHHHHHHhcCC---cHHH------HHHHHcCC-----Cccc--C---CCCCCceeeeeeccC
Q 047308 593 FPHWKRWAELNTN---FCNDVRNFFRGEG---LLSD------LATRLCGS-----GDIF--S---DGRGPAFSFNYIARN 650 (878)
Q Consensus 593 ~~~~~~~~~~n~~---f~d~ir~~l~g~~---~~~~------~~~~l~~s-----~~~f--~---~~~~~~~~inyi~~H 650 (878)
..+++. -++.+.+++...+ ..-+ +...+.+. .+.+ . -+..|..+++||+||
T Consensus 708 -------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNH 780 (894)
T PLN02784 708 -------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENH 780 (894)
T ss_pred -------CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCC
Confidence 111211 2445555554321 0001 11111100 0111 1 124688899999999
Q ss_pred CCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCC
Q 047308 651 TGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKP 730 (878)
Q Consensus 651 D~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~ 730 (878)
|.-+... +|.... .+..+|+|++||.||+||||||+=+|.
T Consensus 781 DTg~~Q~-------------~w~~p~--------------~k~~~AYAyILthpG~PcVFy~h~y~~------------- 820 (894)
T PLN02784 781 DTGSTQG-------------HWRFPE--------------GKEMQGYAYILTHPGTPAVFYDHIFSH------------- 820 (894)
T ss_pred CCCCCcc-------------cCCCCc--------------cchhhHHHHHHcCCCcceEEehhhhhh-------------
Confidence 9653210 221110 134568899999999999999985531
Q ss_pred CCccccccCCCccHHHHHHHHHHHHhhc
Q 047308 731 FDWNALATGFGIQITEFISFLSSFRLKR 758 (878)
Q Consensus 731 ~~W~~~~~~~~~~l~~f~k~Li~LRk~~ 758 (878)
+.+-+++||.+|++.
T Consensus 821 -------------~~~~I~~Li~iRk~~ 835 (894)
T PLN02784 821 -------------YHPEIASLISLRNRQ 835 (894)
T ss_pred -------------hHHHHHHHHHHHHHc
Confidence 123489999999998
No 29
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.9e-39 Score=366.19 Aligned_cols=335 Identities=14% Similarity=0.210 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCcc-CCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPT-KLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 399 ~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d-~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+|+|++|++||||||+||||+|||+|+++..+. +||++.|||.++ ++||+. +|||+||++||++||+||+
T Consensus 39 ~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~-hGY~~~D~y~ld~~~fGt~-------~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 39 NGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSE-QGYMPGRLYDLDASKYGNE-------AQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCccccCCCCcccCCCH-------HHHHHHHHHHHHCCCEEEE
Confidence 3689999999999999999999999999987654 589999999999 599976 9999999999999999999
Q ss_pred EEecccCCCCcC---------CCCC---CCCCccc----------cC------CCCCCcccccCCCCHHHHHHHHHHHHH
Q 047308 478 EVVFTRTADGAL---------QGID---DSSYYYA----------HR------GEGIETTNVLNCNYPTVQQMILNSLRH 529 (878)
Q Consensus 478 DvV~NH~~~~~~---------~~~d---~~~yY~~----------~~------~~~~~~~~dln~~~p~Vr~~iid~l~~ 529 (878)
|+|+||++.+.. .+.. ...||.. ++ ..++..+++||++||+||++|+++++|
T Consensus 111 DvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~w 190 (428)
T PLN00196 111 DIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLW 190 (428)
T ss_pred EECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHH
Confidence 999999996421 1100 1223210 01 012345799999999999999999999
Q ss_pred HHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCC-CCCCCcc---c---c----
Q 047308 530 WVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPK-DTRFPHW---K---R---- 598 (878)
Q Consensus 530 Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~-~~~~~~~---~---~---- 598 (878)
|++++||||||||+|+++..+|.++ ++++ .. ..+++||.|+....... ...+... . .
T Consensus 191 l~~~~GiDG~RlD~ak~~~~~f~~~------~v~~--~~----p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 258 (428)
T PLN00196 191 LKSDIGFDAWRLDFAKGYSAEVAKV------YIDG--TE----PSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDR 258 (428)
T ss_pred HhhCCCCCEEEeehhhhCCHHHHHH------HHHc--cC----CcEEEEEEeccccccccCCccccchhhHHHHHHHHHh
Confidence 9889999999999999998776432 1111 12 25799999986321110 0111100 0 0
Q ss_pred -------hhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCccc
Q 047308 599 -------WAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELS 671 (878)
Q Consensus 599 -------~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~s 671 (878)
.+.+++.....+..++.++ .+ ++.........+. ...|..++|||+|||.-++..+....
T Consensus 259 ~g~~~~~~~~fDF~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~--~~~P~~aVtFvdNHDT~r~~~~~~~~--------- 325 (428)
T PLN00196 259 VGGAASPATVFDFTTKGILNVAVEGE-LW-RLRGADGKAPGVI--GWWPAKAVTFVDNHDTGSTQHMWPFP--------- 325 (428)
T ss_pred cCCccCcceeecccchHHHHHHhcCC-ch-hhhhhcccCcchh--hcChhhceeeccCCCCccccccCCCc---------
Confidence 0011211111112222221 11 0000000001111 13577899999999976543221100
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHH
Q 047308 672 WNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFL 751 (878)
Q Consensus 672 wn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~L 751 (878)
...+++|++++||+||+||||||+ .++| .+.+++++|
T Consensus 326 ------------------~~~~~lAyA~iLT~pG~P~IyYg~----------------~~~~---------~~~~~i~~L 362 (428)
T PLN00196 326 ------------------SDKVMQGYAYILTHPGNPCIFYDH----------------FFDW---------GLKEEIAAL 362 (428)
T ss_pred ------------------cchHHHHHHHHHcCCCcceEeeCC----------------CcCc---------cHHHHHHHH
Confidence 124688999999999999999994 1233 255789999
Q ss_pred HHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEE
Q 047308 752 SSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWH 831 (878)
Q Consensus 752 i~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~ 831 (878)
+++||++ .+.-.|. ....+ .++.++++.|. +.++|.+|..-..-. -+|. .|+
T Consensus 363 i~~Rk~~--~~~~~g~--~~~~~--a~~d~yv~~~~----------------~~~~~~i~~~~~~~~-~~~~-----~~~ 414 (428)
T PLN00196 363 VSIRNRN--GITPTSE--LRIME--ADADLYLAEID----------------GKVIVKIGSRYDVSH-LIPE-----GFQ 414 (428)
T ss_pred HHHHHhC--CCcCCcc--EEEEE--ecCCEEEEEEC----------------CEEEEEECCCCCccc-cCcc-----cce
Confidence 9999998 2221111 11123 24579999993 469999998633211 1231 387
Q ss_pred EEccCC
Q 047308 832 HLVDTA 837 (878)
Q Consensus 832 ~l~dt~ 837 (878)
.++...
T Consensus 415 ~~~~g~ 420 (428)
T PLN00196 415 VVAHGN 420 (428)
T ss_pred EEEecC
Confidence 776554
No 30
>PLN02361 alpha-amylase
Probab=100.00 E-value=2.3e-38 Score=355.87 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=193.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
-|++|++||+||++||||+|||+|++++... +||+|.|||.++++||+. +|||+||++||++||+||+|+|+
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~-~GY~~~d~y~~~~~~Gt~-------~el~~li~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPSQSLAP-EGYLPQNLYSLNSAYGSE-------HLLKSLLRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcCCCC-CCCCcccccccCcccCCH-------HHHHHHHHHHHHcCCEEEEEEcc
Confidence 5899999999999999999999999998665 589999999999999976 99999999999999999999999
Q ss_pred ccCCCC------cCCCCCC--CCC-----ccc-------cCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 482 TRTADG------ALQGIDD--SSY-----YYA-------HRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 482 NH~~~~------~~~~~d~--~~y-----Y~~-------~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
||++.. .+..+.+ ..| +.. +...++..++|||++||+||++|++++++|++++||||||+
T Consensus 99 NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRl 178 (401)
T PLN02361 99 NHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRF 178 (401)
T ss_pred ccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 998531 1111111 011 110 00112345799999999999999999987776799999999
Q ss_pred ccCcccccccccccCCchhHHHHHHcCccccccEEEeecCCCCCCCCCC--CCCCc---------c-----cchhhhhhH
Q 047308 542 INASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADYWDPHGVAPKD--TRFPH---------W-----KRWAELNTN 605 (878)
Q Consensus 542 D~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~w~~~~~~~~~--~~~~~---------~-----~~~~~~n~~ 605 (878)
|+|+++..+|++++ +++. . ..+++||.|+........ ..|.. | ...+.+++.
T Consensus 179 Davk~~~~~f~~~~------~~~~--~----p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 179 DFAKGYSAKFVKEY------IEAA--K----PLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred eccccCCHHHHHHH------HHhh--C----CeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 99999998887643 2221 2 267999999863211100 01100 0 011223444
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHH
Q 047308 606 FCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAV 685 (878)
Q Consensus 606 f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~ 685 (878)
+...+++.+.++ ..++...+.....+.. ..|..+++||+|||.-+...+ |.
T Consensus 247 l~~~l~~a~~~~--~~~l~~~~~~~~~~~~--~~p~~aVTFvdNHDt~r~~~~-------------~~------------ 297 (401)
T PLN02361 247 TKGILQEAVKGQ--WWRLRDAQGKPPGVMG--WWPSRAVTFIDNHDTGSTQAH-------------WP------------ 297 (401)
T ss_pred HHHHHHHHHhhh--HHHHhhhhcCCcchhh--cChhhceEecccCcCcchhhc-------------cC------------
Confidence 455555554321 1122111111112211 357789999999997543211 10
Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhc
Q 047308 686 LERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKR 758 (878)
Q Consensus 686 ~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~ 758 (878)
....++++|++++||+||+||||||+= ++|+ ..+.+++++|+.|||++
T Consensus 298 --~~~~~~~~AyA~iLT~pG~P~Vyyg~~----------------~~~~-------~~~~~~I~~Li~lRk~~ 345 (401)
T PLN02361 298 --FPSDHIMEGYAYILTHPGIPTVFYDHF----------------YDWG-------GSIHDQIVKLIDIRKRQ 345 (401)
T ss_pred --CchHHHHHHHHHHHCCCCcCeEeeccc----------------cCCC-------hHHHHHHHHHHHHHHhC
Confidence 002356778999999999999999961 2333 35889999999999998
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=360.08 Aligned_cols=396 Identities=22% Similarity=0.297 Sum_probs=242.5
Q ss_pred cEEEEEecccccCCCCCCCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCc
Q 047308 377 LVVYRLNVMRFSEHKSSKLPPDI-AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSI 455 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~s~~~~~~-~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~ 455 (878)
+|||++.+++|.+.+.++.+... .|||+||+++|||||+|||++|||+||++.....+||++.||+.+++.+|+.
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~---- 76 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTE---- 76 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCH----
Confidence 48999999999998754333333 4999999999999999999999999999997777899999999999999964
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccCCCC------cCCCCCC---CCCccccC-------------------CC---
Q 047308 456 SAINSMKEMVKKLHANGIEVLLEVVFTRTADG------ALQGIDD---SSYYYAHR-------------------GE--- 504 (878)
Q Consensus 456 ~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~------~~~~~d~---~~yY~~~~-------------------~~--- 504 (878)
++|++||+++|++||+||||+|+||++.. ......+ .+||.+.. +.
T Consensus 77 ---~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (505)
T COG0366 77 ---EDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGN 153 (505)
T ss_pred ---HHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCC
Confidence 99999999999999999999999999985 1222211 24554311 10
Q ss_pred --------CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccc----cCC-chhHHHHHHcCccc
Q 047308 505 --------GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGE----YLS-RPPLIEAIAFDPLL 571 (878)
Q Consensus 505 --------~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~----~~~-~~~~~~~ia~d~~~ 571 (878)
+...+++||+.+++||+.+++.++||+ ++||||||+|+++++...+... ... ...+.+.... ..
T Consensus 154 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 230 (505)
T COG0366 154 TGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLRE--EN 230 (505)
T ss_pred CCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHH--HH
Confidence 123457899999999999999999999 5999999999999998754310 000 0111221110 01
Q ss_pred cccEEEeecCCCCCCCCCCCCCCc----ccchhhhhhHHHHHHHHHH---hcCCcHHHHHHHHcCCCcccCCCCCCceee
Q 047308 572 SKAKLIADYWDPHGVAPKDTRFPH----WKRWAELNTNFCNDVRNFF---RGEGLLSDLATRLCGSGDIFSDGRGPAFSF 644 (878)
Q Consensus 572 ~~~~ligE~w~~~~~~~~~~~~~~----~~~~~~~n~~f~d~ir~~l---~g~~~~~~~~~~l~~s~~~f~~~~~~~~~i 644 (878)
..++..++.+...........+.. ......+...|.......- ........+...+........ .......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 308 (505)
T COG0366 231 PDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVN--LNDGWNN 308 (505)
T ss_pred HHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhc--cccCchh
Confidence 111111222221111100000000 0000001111100000000 000111111111111111110 0112233
Q ss_pred eeeccCCCCCccccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCCCCCC
Q 047308 645 NYIARNTGLPLVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSWGSPS 724 (878)
Q Consensus 645 nyi~~HD~~tL~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~g~n~ 724 (878)
.|..+||..++...... .. ..+...++++++++++.+|+|+||||+|+|++...+..
T Consensus 309 ~~~~~hD~~r~~~~~~~--------------~~---------~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~ 365 (505)
T COG0366 309 LFLSNHDQPRLLSRFGD--------------DV---------GGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPP 365 (505)
T ss_pred hhhhhcCccceeeeccC--------------Cc---------cchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcc
Confidence 36888986654433210 00 00234678888999999999999999999998865431
Q ss_pred -----------------CCCCCCCCccc---------------------------cc--cCCCccHHHHHHHHHHHHhhc
Q 047308 725 -----------------YADRKPFDWNA---------------------------LA--TGFGIQITEFISFLSSFRLKR 758 (878)
Q Consensus 725 -----------------y~~r~~~~W~~---------------------------~~--~~~~~~l~~f~k~Li~LRk~~ 758 (878)
...|.+|+|+. .. +....+++.++++|+++|+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~ 445 (505)
T COG0366 366 IKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQH 445 (505)
T ss_pred hhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhh
Confidence 15688999981 11 111457899999999998887
Q ss_pred cCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCC
Q 047308 759 KENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPP 823 (878)
Q Consensus 759 ~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~ 823 (878)
. .+...+.. ..........+++|.|... .+.++|++|++.....+.+|.
T Consensus 446 ~-~~~~~g~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~n~~~~~~~~~~p~ 494 (505)
T COG0366 446 S-ALLANGED--FVLLADDDPSLLAFLRESG-------------GETLLVVNNLSEEEQEVELPG 494 (505)
T ss_pred h-hhhcCccc--ceecCCCCceEEEEecccC-------------CceEEEEEcCCCccccccCCc
Confidence 2 22222211 1112223346899999753 457999999998876666664
No 32
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=8.7e-36 Score=340.32 Aligned_cols=374 Identities=10% Similarity=0.107 Sum_probs=244.1
Q ss_pred CCCHHHHHHHHH-HHHhcCCCeEEEccCc-ccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 400 AGTFSGVTEKVH-HLKDLGVNAILLEPIL-SFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 400 ~Gt~~gi~~kLd-yLk~LGvt~I~L~PI~-~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.|+++||+++|| ||++| |++|||||+| +++..++||++.||++++|+||+ ++||++|++ ||+|||
T Consensus 16 ~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt-------~eDf~~L~~-----giklml 82 (495)
T PRK13840 16 DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGD-------WDDVKALGK-----THDIMA 82 (495)
T ss_pred CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCC-------HHHHHHHHh-----CCeEEE
Confidence 389999999999 59999 9999999999 45666789999999999999996 599999995 999999
Q ss_pred EEecccCCCC--cCCCC-----C--CCCCccccC---------------------C-----------------CCCCccc
Q 047308 478 EVVFTRTADG--ALQGI-----D--DSSYYYAHR---------------------G-----------------EGIETTN 510 (878)
Q Consensus 478 DvV~NH~~~~--~~~~~-----d--~~~yY~~~~---------------------~-----------------~~~~~~~ 510 (878)
|+|+||++.. +|+.. + ..+||.+.+ . .+...++
T Consensus 83 DlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~Qp 162 (495)
T PRK13840 83 DLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQI 162 (495)
T ss_pred EECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccc
Confidence 9999999985 22221 1 123443210 0 0123579
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCch---hHHHHHHcCccccccEEEeecCCCCCCC
Q 047308 511 VLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRP---PLIEAIAFDPLLSKAKLIADYWDPHGVA 587 (878)
Q Consensus 511 dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~---~~~~~ia~d~~~~~~~ligE~w~~~~~~ 587 (878)
|||++||+|+++|+++++||+ +.||||||+|++.++.+.........+ .+++.++..-...+..+|+|.|......
T Consensus 163 DLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~ 241 (495)
T PRK13840 163 DIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQ 241 (495)
T ss_pred eeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCcc
Confidence 999999999999999999999 789999999999988775322222112 2444443211112567899988754322
Q ss_pred CCCCCCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCcccc---------
Q 047308 588 PKDTRFPHWKRWAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDL--------- 658 (878)
Q Consensus 588 ~~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~--------- 658 (878)
..... .....+|+.+...+...+..+. ...+...+... |...+||+.+||+..+.|+
T Consensus 242 ~~~~~----e~~~vYnF~Lp~ll~~aL~~~~-~~~L~~~l~~~---------p~~~~n~L~~HDgIgl~d~~~~~~~~~g 307 (495)
T PRK13840 242 IEIAK----KVDRVYDFALPPLILHTLFTGD-VEALAHWLEIR---------PRNAVTVLDTHDGIGIIDVGADDRGLAG 307 (495)
T ss_pred ccccc----cccEEecchhhHHHHHHHHhCC-chHHHHHHHhC---------CCccEEeeecCCCCCccccccccccccc
Confidence 11000 1234456666665554443321 12333334321 3445799999999998444
Q ss_pred -ccccC--------CCCCCcccccCCCCCCCC-ch--------HHHHHHHHHHHHHHHHHHhcCCceeEecchhccccCC
Q 047308 659 -VSFSG--------GGLASELSWNCGEEGPTT-KT--------AVLERRLKQIRNFLFVLYVSLGVPILNMGDECGQSSW 720 (878)
Q Consensus 659 -v~~~~--------~~~~~~~swn~g~~G~t~-~~--------~~~~~r~~~~rla~allltspGiP~Iy~GdE~G~~~~ 720 (878)
+...+ .+.+.+.++.....+.+. +. ..+...-++..+|.+++|++||||.||||+|+|..+.
T Consensus 308 ll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND 387 (495)
T PRK13840 308 LLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQVYYVGLLAGPND 387 (495)
T ss_pred CCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCcceeeechhhccCcc
Confidence 21111 112223333322222111 00 0111112357788899999999999999999998653
Q ss_pred -------CCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccc
Q 047308 721 -------GSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAES 793 (878)
Q Consensus 721 -------g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~ 793 (878)
+++.+-+|..++|+.........+++-+++||++|+++ -.|+|. .....+.++.+...|...
T Consensus 388 ~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~---~aF~~~----~~~~~~~~~~~~~~~~~~---- 456 (495)
T PRK13840 388 MELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEH---PAFDGA----FSYAADGDTSLTLSWTAG---- 456 (495)
T ss_pred HHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cccCce----EEEecCCCCeEEEEEecC----
Confidence 23556678899999776544566899999999999988 345543 122233556777777642
Q ss_pred cccccCCCCCCeEEEEEeCCCCcEEEEc
Q 047308 794 QLSSESSQTKGDLYIACNAADHSESVVL 821 (878)
Q Consensus 794 ~~~~~~~~~~~~llVv~N~s~~~~~~~L 821 (878)
.....+.+|+......+..
T Consensus 457 ---------~~~~~~~~~~~~~~~~~~~ 475 (495)
T PRK13840 457 ---------DSSASLTLDFAPKKGLITA 475 (495)
T ss_pred ---------CceEEEEEEcccceEEEEe
Confidence 4566777787766544443
No 33
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3.9e-35 Score=333.13 Aligned_cols=384 Identities=11% Similarity=0.107 Sum_probs=241.0
Q ss_pred ecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHH
Q 047308 383 NVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMK 462 (878)
Q Consensus 383 hv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk 462 (878)
.+.+|.++.. ...|++.|++++ ||++ ||++|||+|+|+++. ++||++.||++++|+||+ ++||+
T Consensus 4 ~lity~Ds~g-----~glgdl~g~l~~--yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt-------~~Df~ 67 (470)
T TIGR03852 4 MLITYADSLG-----KNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGD-------WSDVE 67 (470)
T ss_pred eEEEecCCCC-----CChhhHHHHHHH--HHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCC-------HHHHH
Confidence 4456666542 245888888888 9999 799999999999986 678999999999999996 59999
Q ss_pred HHHHHHHHCCCEEEEEEecccCCCC--cCCC----C-C--CCCCcc-c----c---C--------------C--------
Q 047308 463 EMVKKLHANGIEVLLEVVFTRTADG--ALQG----I-D--DSSYYY-A----H---R--------------G-------- 503 (878)
Q Consensus 463 ~LV~~aH~~GI~VILDvV~NH~~~~--~~~~----~-d--~~~yY~-~----~---~--------------~-------- 503 (878)
+|+++ |+||+|+|+|||+.. +|+. - + ..+||. + . + .
T Consensus 68 ~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 142 (470)
T TIGR03852 68 ALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFA 142 (470)
T ss_pred HHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEc
Confidence 99997 899999999999985 2221 1 1 134565 1 0 0 0
Q ss_pred ---------CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCc-h---hHHHHHHcCcc
Q 047308 504 ---------EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSR-P---PLIEAIAFDPL 570 (878)
Q Consensus 504 ---------~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~-~---~~~~~ia~d~~ 570 (878)
.+...++|||+.||.|+++|.++++||+ +.||||||+|++.++++......... + .+++.++.--.
T Consensus 143 ~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~ 221 (470)
T TIGR03852 143 DGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILA 221 (470)
T ss_pred CCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhc
Confidence 0124589999999999999999999999 89999999999999987643222111 2 23444333223
Q ss_pred ccccEEEeecCCCCCCCCCCCCCCcccchhhhhhHHHHHHHHHH-hcCCcHHHHHHHHcCCCcccCCCCCCceeeeeecc
Q 047308 571 LSKAKLIADYWDPHGVAPKDTRFPHWKRWAELNTNFCNDVRNFF-RGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIAR 649 (878)
Q Consensus 571 ~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~~n~~f~d~ir~~l-~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~ 649 (878)
.+++.||+|.+........ .+ .-+.|++.|.-..+-+. ...+....+...+... |...+||+.+
T Consensus 222 ~~~~~ll~E~~~~~~~~~~-~g-----de~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~---------p~~~~nfL~s 286 (470)
T TIGR03852 222 PTGAEILPEIHEHYTIQFK-IA-----EHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKS---------PMKQFTTLDT 286 (470)
T ss_pred cCCCEEEeHhhhhcccccc-cc-----cceeEEccCccchhhHHHhhccCHHHHHHHHHhC---------cccceEEeec
Confidence 3589999999753322111 01 12345555544332222 1122334455555422 3345799999
Q ss_pred CCCCCccccccccC-----------CCCCCcccccC--CCCCCC---C-c---hHHHHHHHHHHHHHHHHHHhcCCceeE
Q 047308 650 NTGLPLVDLVSFSG-----------GGLASELSWNC--GEEGPT---T-K---TAVLERRLKQIRNFLFVLYVSLGVPIL 709 (878)
Q Consensus 650 HD~~tL~D~v~~~~-----------~~~~~~~swn~--g~~G~t---~-~---~~~~~~r~~~~rla~allltspGiP~I 709 (878)
||+.+|.|+...-. ...+.+.+|.. ...|.. . + ...+....++..+|.+++|++||||.|
T Consensus 287 HDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i 366 (470)
T TIGR03852 287 HDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV 366 (470)
T ss_pred CCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE
Confidence 99999865421111 11122333311 111100 0 0 011122235678899999999999999
Q ss_pred ecchhccccCCCC----CCC-CCCCCCCcc--ccccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEE
Q 047308 710 NMGDECGQSSWGS----PSY-ADRKPFDWN--ALATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFL 782 (878)
Q Consensus 710 y~GdE~G~~~~g~----n~y-~~r~~~~W~--~~~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vl 782 (878)
|||+|+|+.+.-. ... ...+.-.|+ ..+......+..-..+||++|+++ + .+| .++.+. .....+.++
T Consensus 367 Yy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~-~--aF~-~~g~~~-~~~~~~~~~ 441 (470)
T TIGR03852 367 YYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTS-K--AFD-LDGSID-IETPSENQI 441 (470)
T ss_pred EechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhC-c--ccC-CCCceE-ecCCCCcEE
Confidence 9999999965321 000 123333343 333222233555556689999998 2 332 112221 223466899
Q ss_pred EEEEecccccccccccCCCCCCeEEEEEeCCCCcEEE
Q 047308 783 AMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESV 819 (878)
Q Consensus 783 af~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~ 819 (878)
++.|... +..+.+++++|+++..+.+
T Consensus 442 ~~~r~~~-----------~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 442 EIVRTNK-----------DGGNKAILTANLKTKTFTI 467 (470)
T ss_pred EEEEEcC-----------CCCceEEEEEecCCCcEec
Confidence 9999653 2468999999999987544
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-33 Score=326.77 Aligned_cols=427 Identities=16% Similarity=0.192 Sum_probs=257.4
Q ss_pred CCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC
Q 047308 373 PMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR 452 (878)
Q Consensus 373 ~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~ 452 (878)
.|+..++|||.+++|..++. +..|+++||++||||||+||+|+|||+||+++.....||++.||+.++++||+.
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~-----d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~- 87 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDG-----DGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTE- 87 (545)
T ss_pred hhhcCceeEEeccccccccC-----CCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHH-
Confidence 48999999999999999874 345999999999999999999999999999998887899999999999999964
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC--cC-----CCCCCCCCccccC-----------------------
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG--AL-----QGIDDSSYYYAHR----------------------- 502 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~--~~-----~~~d~~~yY~~~~----------------------- 502 (878)
+||++||+++|++||++|+|+|+||++.. +| ......+||.+.+
T Consensus 88 ------edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~ 161 (545)
T KOG0471|consen 88 ------EDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSA 161 (545)
T ss_pred ------HHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhcccc
Confidence 99999999999999999999999999842 11 1111011221110
Q ss_pred CC------------CCCcccccCCCCHHHHHHHHHHHH-HHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCc
Q 047308 503 GE------------GIETTNVLNCNYPTVQQMILNSLR-HWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDP 569 (878)
Q Consensus 503 ~~------------~~~~~~dln~~~p~Vr~~iid~l~-~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~ 569 (878)
+. ....+++||+++|.|++.|.++++ +|+ ++||||||+|+++++...++.... ...
T Consensus 162 ~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~~~~---------~~~- 230 (545)
T KOG0471|consen 162 WPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFKNMW---------PDE- 230 (545)
T ss_pred CcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEcccccccccccccc---------cCC-
Confidence 00 012368999999999999999999 888 999999999999998776643110 111
Q ss_pred cccccEEEeecCCCCCCCC-CCCCCCcccchhhhhhHHHHHHHHHHhcCCcHHH-HHHHHcCCCcccCCCCCCceeeeee
Q 047308 570 LLSKAKLIADYWDPHGVAP-KDTRFPHWKRWAELNTNFCNDVRNFFRGEGLLSD-LATRLCGSGDIFSDGRGPAFSFNYI 647 (878)
Q Consensus 570 ~~~~~~ligE~w~~~~~~~-~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~~~~~-~~~~l~~s~~~f~~~~~~~~~inyi 647 (878)
...-.||.|...+... ....+ ......+..+....+..+.......+ ...++.... .+. ......+|.
T Consensus 231 ---p~~~~~~~~~~~~~~~~~~~~y---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~~~~~~~ 300 (545)
T KOG0471|consen 231 ---PVFDVGEKLQDDNYVAYQYNDY---GEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTE-AYS---SLEQLLRLL 300 (545)
T ss_pred ---CcccceeEecCcchhhcccccc---cccchhhhhHHHHHHhhhhhhhhcccccchhhhhhh-hhc---cHHHHHhhh
Confidence 1234566665433221 11111 00111122222222322222100000 000000000 000 011122333
Q ss_pred ccCCCCC-----------------cc--------ccccccCCCCCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 047308 648 ARNTGLP-----------------LV--------DLVSFSGGGLASELSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYV 702 (878)
Q Consensus 648 ~~HD~~t-----------------L~--------D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~~~~rla~alllt 702 (878)
++|+... .. +..... +.......|..+.....+ ..........+++.+++++
T Consensus 301 ~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~W~~~~~~~~r--~~sr~~~~~~~~~~~l~~t 377 (545)
T KOG0471|consen 301 ENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNH-DTENRWAHWVLGNHDQAR--LASRFGSDSVDLLNVLLLT 377 (545)
T ss_pred ccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcC-CccCCceeeeecCccchh--hHHHhcchhHHHHhHHhcc
Confidence 3333111 00 000000 101112235544332111 1111111235677789999
Q ss_pred cCCceeEecchhccccCC---CCCCC-----CCCCCCCcccccc--------------------------CCCccHHHHH
Q 047308 703 SLGVPILNMGDECGQSSW---GSPSY-----ADRKPFDWNALAT--------------------------GFGIQITEFI 748 (878)
Q Consensus 703 spGiP~Iy~GdE~G~~~~---g~n~y-----~~r~~~~W~~~~~--------------------------~~~~~l~~f~ 748 (878)
+||+|++|+|+|+|+... ..+.. +.|++|+|+.... ...+++..++
T Consensus 378 lpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~ 457 (545)
T KOG0471|consen 378 LPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLF 457 (545)
T ss_pred cCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHH
Confidence 999999999999999875 22222 2288999986510 2346789999
Q ss_pred HHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCC
Q 047308 749 SFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGM 828 (878)
Q Consensus 749 k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~ 828 (878)
+++..||+... ...+|.. ........+++|.|... ....+++++|++.......+-.+..
T Consensus 458 ~~~~~lr~~~~--~~~~g~~----~~~~~~~~if~~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-- 517 (545)
T KOG0471|consen 458 KRLLDLRKSER--SYLHGSF----VLFAATPGLFSFSRNWD------------GNERFIAVLNFGDSPLSLNLTDLDS-- 517 (545)
T ss_pred HHHHHHhhhcc--cccccce----eeecCCCceEEEEeccC------------CCceEEEEEecCCcccccccccccc--
Confidence 99999999871 2222211 11123567999999764 4678888888888876555443221
Q ss_pred eEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 829 TWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 829 ~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
...+.++. .......+.|+|++.+||.
T Consensus 518 -~~~~~~~~----------------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 518 -VSLLSSNY----------------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred -eeeeeccc----------------cccccceeeecCCceEEEe
Confidence 12222111 0112236889999999986
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=4.6e-31 Score=301.93 Aligned_cols=448 Identities=16% Similarity=0.090 Sum_probs=271.9
Q ss_pred CCcEEEEEecccccCCCCCCCCCCCCCCHHH-HHH--HHHHHHhcCCCeEEEccCccc---------CCCCCCCCCCCCC
Q 047308 375 EKLVVYRLNVMRFSEHKSSKLPPDIAGTFSG-VTE--KVHHLKDLGVNAILLEPILSF---------DEQKGPYFPRHFF 442 (878)
Q Consensus 375 ~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~g-i~~--kLdyLk~LGvt~I~L~PI~~~---------~~~~~gY~~~~yf 442 (878)
.-.+.+.+++.++...+ +..+.+ +.+ -.+||++|||++|||+|++++ +..++||+..| |
T Consensus 50 ~a~~W~~~~P~s~i~~~--------~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~ 120 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPE--------GCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-F 120 (688)
T ss_pred hcCeeEEecchhhcCCC--------CCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-C
Confidence 45688899999988644 233433 333 379999999999999999999 77778999999 5
Q ss_pred CccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCc-CC-----CCCCCCCc-----------cccC--C
Q 047308 443 SPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGA-LQ-----GIDDSSYY-----------YAHR--G 503 (878)
Q Consensus 443 a~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~-~~-----~~d~~~yY-----------~~~~--~ 503 (878)
++++.|||. +||++||++||++||+||+|+|+|||+.+. |+ .-+-++|| .+.+ .
T Consensus 121 ~Idp~~GT~-------eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~ 193 (688)
T TIGR02455 121 DIDPLLGSE-------EELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPA 193 (688)
T ss_pred ccCcccCCH-------HHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCc
Confidence 999999965 999999999999999999999999999852 21 11234566 1100 0
Q ss_pred C------------------------------------------------------------CCCcccccCCCCHH--HHH
Q 047308 504 E------------------------------------------------------------GIETTNVLNCNYPT--VQQ 521 (878)
Q Consensus 504 ~------------------------------------------------------------~~~~~~dln~~~p~--Vr~ 521 (878)
. +...+|+||+.||. ||+
T Consensus 194 ~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~ 273 (688)
T TIGR02455 194 GRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQ 273 (688)
T ss_pred ccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHH
Confidence 0 02347999999999 999
Q ss_pred HHH-HHHHHHHHhcCccEEEEccCcccccccccc---cCCchhHHHHHHc--C--ccccccEEEeecCCCCCCCCCCCCC
Q 047308 522 MIL-NSLRHWVTEFHIDGFCFINASSLLRGFHGE---YLSRPPLIEAIAF--D--PLLSKAKLIADYWDPHGVAPKDTRF 593 (878)
Q Consensus 522 ~ii-d~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~---~~~~~~~~~~ia~--d--~~~~~~~ligE~w~~~~~~~~~~~~ 593 (878)
.|+ ++++||+ +.|+||||+|++.++......+ +....+++++.+. + -..++.++++|.-......... +
T Consensus 274 ~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~--~ 350 (688)
T TIGR02455 274 LIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAM--S 350 (688)
T ss_pred HHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHH--h
Confidence 999 9999999 9999999999999887643321 1122345444321 1 2335678888854422111000 0
Q ss_pred CcccchhhhhhHHHHHH-HHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCccccccc-----------
Q 047308 594 PHWKRWAELNTNFCNDV-RNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLVDLVSF----------- 661 (878)
Q Consensus 594 ~~~~~~~~~n~~f~d~i-r~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~D~v~~----------- 661 (878)
.+ .....+++..+..+ ..++.|+. .-+...|.....+ +-.....++|+.|||.+|+. ++.+
T Consensus 351 g~-~~dl~~dF~t~p~~~~AL~tgda--~pLr~~L~~~~~~---gid~~~~~~~LrNHDELtle-lvh~~~~~~~~~~~~ 423 (688)
T TIGR02455 351 HG-GADLSYDFITRPAYHHALLTGDT--EFLRLMLKEMHAF---GIDPASLIHALQNHDELTLE-LVHFWTLHAHDHYHY 423 (688)
T ss_pred CC-CcceeecccccHHHHHHHHcCCH--HHHHHHHHhhhcC---CCCchhhhhhccCccccchh-hhhhccccccccccc
Confidence 00 11122222222222 22333332 1222222222111 01345678999999998874 2211
Q ss_pred cC----------------------CCCCCcc-cccCC-----------CCCCCCchHHHHHHHHHHHHHHHHHHh----c
Q 047308 662 SG----------------------GGLASEL-SWNCG-----------EEGPTTKTAVLERRLKQIRNFLFVLYV----S 703 (878)
Q Consensus 662 ~~----------------------~~~~~~~-swn~g-----------~~G~t~~~~~~~~r~~~~rla~alllt----s 703 (878)
.. +....+. .|..| .-|..+-.+......++++++.++|++ +
T Consensus 424 ~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~l 503 (688)
T TIGR02455 424 KGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQ 503 (688)
T ss_pred ccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccC
Confidence 10 0000010 11000 112112223333455678899999999 9
Q ss_pred CCceeEecc--------------hhccccCCC---CCCCCC---------------CCCCCccccc--cCCCccHHHHHH
Q 047308 704 LGVPILNMG--------------DECGQSSWG---SPSYAD---------------RKPFDWNALA--TGFGIQITEFIS 749 (878)
Q Consensus 704 pGiP~Iy~G--------------dE~G~~~~g---~n~y~~---------------r~~~~W~~~~--~~~~~~l~~f~k 749 (878)
||+|+|||| +|+||-..- +-.|+. +.+..+.... .....++...++
T Consensus 504 PG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~ 583 (688)
T TIGR02455 504 PGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLK 583 (688)
T ss_pred CCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHH
Confidence 999999999 999985321 011110 0111121111 134578999999
Q ss_pred HHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEE--EEcCCCCCC
Q 047308 750 FLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSES--VVLPPPPEG 827 (878)
Q Consensus 750 ~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~--~~Lp~~~~g 827 (878)
++++.|+++ .+.-.+ ....+ ......+++|.+... +..+.+++|.||+.+++. +.++..+.
T Consensus 584 ~il~vR~~~--~i~~~~-~~~~~--~~~~~gvLa~v~~l~-----------~~~~~~L~v~Nfs~~~~~~~l~l~~~~~- 646 (688)
T TIGR02455 584 KILAVRQAY--DIAASK-QILIP--DVQAPGLLVMVHELP-----------AGKGIQITALNFGADAIAEEICLPGFAP- 646 (688)
T ss_pred HHHHHHHhC--CcccCc-eeeec--CCCCCcEEEEEEEcC-----------CCCceEEEeeccCCCCeeeEEeccccCC-
Confidence 999999998 111111 01111 123568999998643 124679999999997655 55565544
Q ss_pred CeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEccC
Q 047308 828 MTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEASNG 876 (878)
Q Consensus 828 ~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~~~ 876 (878)
+.++++++..... . ....+..+++|+|+...-|..+..
T Consensus 647 ~~~~dl~~~~~~~--------~---~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 647 GPVVDIIHESVEG--------D---LTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred CCceeccCCCccC--------C---cCCCceeEEEecCcceEEEEeccc
Confidence 4778887765311 0 013355789999999888887654
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.96 E-value=1.3e-26 Score=276.40 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCccc-CCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSF-DEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~-~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+|||.+++++|+||++||||+|||+||+++ ++..+||++.||+++++.||+. ++|++||++||++||+||||
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~-------edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGE-------EGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEE
Confidence 689999999999999999999999999986 4456799999999999999975 99999999999999999999
Q ss_pred EecccCCCC
Q 047308 479 VVFTRTADG 487 (878)
Q Consensus 479 vV~NH~~~~ 487 (878)
+|+||++.+
T Consensus 85 iVpNH~a~~ 93 (825)
T TIGR02401 85 IVPNHMAVH 93 (825)
T ss_pred ecccccccc
Confidence 999999964
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.90 E-value=3.2e-21 Score=231.29 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCccc-CCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSF-DEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~-~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
.+||.+++++|+||++||||+|||+||++. ++..+||++.||+.+++.||+. ++|++||++||++||+||||
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~-------e~f~~Lv~aah~~Gi~VIlD 88 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGE-------EGLRRLAAALRAHGMGLILD 88 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCH-------HHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999999987 4556799999999999999976 99999999999999999999
Q ss_pred EecccCCCC
Q 047308 479 VVFTRTADG 487 (878)
Q Consensus 479 vV~NH~~~~ 487 (878)
+|+||++.+
T Consensus 89 iV~NH~~~~ 97 (879)
T PRK14511 89 IVPNHMAVG 97 (879)
T ss_pred eccccccCc
Confidence 999999974
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.86 E-value=5.1e-22 Score=199.17 Aligned_cols=94 Identities=35% Similarity=0.534 Sum_probs=86.8
Q ss_pred EEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCC---CCCCCCCCCCCCccCCCCCCCCCcch
Q 047308 381 RLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE---QKGPYFPRHFFSPTKLHGPSRGSISA 457 (878)
Q Consensus 381 evhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~---~~~gY~~~~yfa~d~~yGt~~~~~~~ 457 (878)
||.+++|.++++ +..|||++++++|+|||+||||+|||+||+++.. ..+||++.+|++++++||+.
T Consensus 1 qi~~~~F~~~~~-----~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~------ 69 (166)
T smart00642 1 QIYPDRFADGNG-----DGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTM------ 69 (166)
T ss_pred CeeeccccCCCC-----CCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCH------
Confidence 578999999874 3579999999999999999999999999999885 56789999999999999975
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
+||++||++||++||+||||+|+||++.
T Consensus 70 -~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 70 -EDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred -HHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 9999999999999999999999999974
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.3e-19 Score=187.83 Aligned_cols=387 Identities=14% Similarity=0.163 Sum_probs=237.8
Q ss_pred HHHHHHHH-HHHHhcCCCeEEEccCcccCCC------CC-CCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE
Q 047308 403 FSGVTEKV-HHLKDLGVNAILLEPILSFDEQ------KG-PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE 474 (878)
Q Consensus 403 ~~gi~~kL-dyLk~LGvt~I~L~PI~~~~~~------~~-gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~ 474 (878)
+..|+..- ..|.--|+-+||..|+.|..-. +| -|+|..| .++.+-|.+ +||+.||+.|.+-|++
T Consensus 39 W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSGNE-------~eF~dMV~RCN~VGVR 110 (504)
T KOG2212|consen 39 WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSGNE-------DEFRDMVTRCNNVGVR 110 (504)
T ss_pred hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCCCH-------HHHHHHHHHhhccceE
Confidence 55666554 5678899999999999986321 12 4999985 889998876 9999999999999999
Q ss_pred EEEEEecccCCCCc----------------CCCCCCCCCc---cccC-----------CC------C--CCcccccCCCC
Q 047308 475 VLLEVVFTRTADGA----------------LQGIDDSSYY---YAHR-----------GE------G--IETTNVLNCNY 516 (878)
Q Consensus 475 VILDvV~NH~~~~~----------------~~~~d~~~yY---~~~~-----------~~------~--~~~~~dln~~~ 516 (878)
+++|+|+||++... -..+.+-.|- +.++ ++ . .-.+.|||-.+
T Consensus 111 iyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s 190 (504)
T KOG2212|consen 111 IYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGS 190 (504)
T ss_pred EEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcc
Confidence 99999999998420 0111111111 1110 00 0 11247889999
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcC--ccccccEEEeecCCCCCCCCCCCCCC
Q 047308 517 PTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFD--PLLSKAKLIADYWDPHGVAPKDTRFP 594 (878)
Q Consensus 517 p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d--~~~~~~~ligE~w~~~~~~~~~~~~~ 594 (878)
.-||..|++-|.+.+ +.||.|||.|+++||+.+....+.+. +..+..| +...+.+++-|..+.+....+...|-
T Consensus 191 ~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~---l~nLnsD~f~s~srpfi~qEVID~GgE~v~~~dY~ 266 (504)
T KOG2212|consen 191 DYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDK---LHNLNSDWFPSGSKPFIYQEVIDLGGEPIKSSDYF 266 (504)
T ss_pred hHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHH---HhhcccccccCCCCceehhhhhhcCCceeeccccc
Confidence 999999999999999 99999999999999976543221111 1112222 33456788889888765554444444
Q ss_pred cccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHcCCCcccCCCCCCceeeeeeccCCCCCcc-----ccccccCCCCCCc
Q 047308 595 HWKRWAELNTNFCNDVRNFFRGEGLLSDLATRLCGSGDIFSDGRGPAFSFNYIARNTGLPLV-----DLVSFSGGGLASE 669 (878)
Q Consensus 595 ~~~~~~~~n~~f~d~ir~~l~g~~~~~~~~~~l~~s~~~f~~~~~~~~~inyi~~HD~~tL~-----D~v~~~~~~~~~~ 669 (878)
+..... ++.|.+.+-..+++...+.-+...-.+ --|. ....+++||+|||+.+-+ +++.|
T Consensus 267 g~G~~T--eF~f~~~ig~~~r~~~~~kyL~nwG~~--wGf~---~s~~~L~FvDNHDNQR~~gagga~VltY-------- 331 (504)
T KOG2212|consen 267 GNGRVT--EFKFGAKLGTVIRKWNKMKYLKNWGEG--WGFM---PSDRALVFVDNHDNQRGHGAGGASVLTY-------- 331 (504)
T ss_pred CCceee--eeechHHHHHHHhcchhHHHHHhcCCc--cCcC---CCcceEEEeccCcccccCCCCcceEEEe--------
Confidence 433334 456788888888887655444332211 1232 234689999999976521 12221
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhcC-CceeEecchhccccCCCC---C-------CCCCCCC--CCcccc
Q 047308 670 LSWNCGEEGPTTKTAVLERRLKQIRNFLFVLYVSL-GVPILNMGDECGQSSWGS---P-------SYADRKP--FDWNAL 736 (878)
Q Consensus 670 ~swn~g~~G~t~~~~~~~~r~~~~rla~allltsp-GiP~Iy~GdE~G~~~~g~---n-------~y~~r~~--~~W~~~ 736 (878)
+..++.+||.+++|..| |+|-+..-=-|-.+.+.. + .++.++. --|--.
T Consensus 332 ------------------K~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvCE 393 (504)
T KOG2212|consen 332 ------------------KDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVCE 393 (504)
T ss_pred ------------------cchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCceeee
Confidence 11357999999999999 998654322222222111 1 1111100 023211
Q ss_pred ccCCCccHHHHHHHHHHHHhhccCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCc
Q 047308 737 ATGFGIQITEFISFLSSFRLKRKENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHS 816 (878)
Q Consensus 737 ~~~~~~~l~~f~k~Li~LRk~~~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~ 816 (878)
- --.-++.|.++|..-. +. ....|-+...+.|+|.|... =++++|...-.
T Consensus 394 H------RWrqI~~Mv~FrnAV~------~t--~~~~w~d~g~nqIaF~Rg~k----------------GF~A~Nn~~~d 443 (504)
T KOG2212|consen 394 H------RWRQIRNMVNFRNAVD------GT--PFTNWYDNGSNQIAFGRGNR----------------GFIAFNNDDWD 443 (504)
T ss_pred c------hHHHHHHHHhhhhhcC------Cc--cccceeeCCCcEEEEecCCc----------------cEEEEeCcchh
Confidence 0 1122556677776541 11 12345555678999999653 48999988876
Q ss_pred EEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcE
Q 047308 817 ESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYS 867 (878)
Q Consensus 817 ~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S 867 (878)
.+..|......+.|.+++..+... +.+ .+..++-..++...+.|+..+
T Consensus 444 ~s~~l~T~LPAGtYCDviSG~~~~-g~C--tG~~iTV~~dg~~y~~i~S~~ 491 (504)
T KOG2212|consen 444 FSLTLQTGLPAGTYCDVISGDKIN-GNC--TGIKITVSDDGKAYFSISSSA 491 (504)
T ss_pred HHHHHhcCCCCCceeeeecccccC-Cce--eeeEEEEccCCcEEEEecCCC
Confidence 665665433345899999887533 212 233333344566677777766
No 40
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.79 E-value=1.6e-16 Score=179.50 Aligned_cols=278 Identities=19% Similarity=0.280 Sum_probs=170.3
Q ss_pred CCCceEEecCCeEEEEEEcCCCC-------eEEEEEecCCCCCCC----------ceeeccCccccCCCCEEEEEEcCCC
Q 047308 239 SPMGLSFSTDGSLNFAIFSRHAQ-------GVVLCLYDDTTADRP----------ALELDLDPYINRSGDIWHASMESTW 301 (878)
Q Consensus 239 ~~lGa~~~~~g~v~F~vwaP~A~-------~V~l~l~~~~~~~~~----------~~~~~l~~~~~~~~gvW~v~i~~~~ 301 (878)
..||||+.+||.+.|-+|.|.-. .|.|.+|..-+.-.+ ...+++ .+.|..-+..+.|..
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L----~~qgey~WgVv~Glr 101 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPL----ERQGEYHWGVVAGLR 101 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEee----ccccceeeehhhccC
Confidence 47999999999899999999755 888888875433211 112233 244443333444443
Q ss_pred ------CCceeEEEECCCcCCCCCCccccceeecCccccccccCCCCCCCCCC------CCCcccccccCCCCCCCCCCC
Q 047308 302 ------NFVSYGYRFKGSFSQGDGYKSHLESVLLDPYAKIIVNSIPNHHDLGL------PPKYLGRLCKEPDFDWGGDVH 369 (878)
Q Consensus 302 ------~g~~Y~y~i~~~~~~~~g~~~~~~~~~~DPyA~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~W~~~~~ 369 (878)
.|..|.-|+... .|. ...+.||.|.++.-....+..+.- ....++-+.....-. ..+..
T Consensus 102 aGtr~q~GsfYwLry~d~----~~~----~~~I~DpLaySlPyGvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~-~~~~~ 172 (811)
T PF14872_consen 102 AGTRDQAGSFYWLRYRDQ----DGE----VQIIRDPLAYSLPYGVFAPAELYDLERLQRRRADLDYFEATGAAD-PSDGI 172 (811)
T ss_pred CCCcccccceEEEEEccC----CCC----eEEecccccccCcccccChHHhhchHhHhhhhhhHHHHHhhcccc-CCCCC
Confidence 367898888754 232 578899999998733221111100 000000000000000 01122
Q ss_pred CCCCCCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHh---------------cCCCeEEEccCcccCCCCC
Q 047308 370 LNLPMEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKD---------------LGVNAILLEPILSFDEQKG 434 (878)
Q Consensus 370 ~~~~~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~---------------LGvt~I~L~PI~~~~~~~~ 434 (878)
+..+ ....|-||||..-+. .||++|+++....|.+ .|+++||||||-+.-+...
T Consensus 173 ~rv~-~P~nILQiHv~TAsp----------~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~ 241 (811)
T PF14872_consen 173 PRVP-APRNILQIHVGTASP----------EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRA 241 (811)
T ss_pred cccC-CCceeEEEecCCCCC----------CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceecc
Confidence 2222 346799999998664 4999999987655554 7999999999954322111
Q ss_pred CCCC-CCCCCccCC------------------------------------CCCC-CC----CcchHHHHHHHHHHHHH--
Q 047308 435 PYFP-RHFFSPTKL------------------------------------HGPS-RG----SISAINSMKEMVKKLHA-- 470 (878)
Q Consensus 435 gY~~-~~yfa~d~~------------------------------------yGt~-~~----~~~~i~elk~LV~~aH~-- 470 (878)
++.. .+||++.+. +|+. .+ ...+.+||-.||.++|.
T Consensus 242 e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp 321 (811)
T PF14872_consen 242 ENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFP 321 (811)
T ss_pred ccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCC
Confidence 1111 122222221 1111 01 12577999999999997
Q ss_pred -CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcc
Q 047308 471 -NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASS 546 (878)
Q Consensus 471 -~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~ 546 (878)
..|.||+|+||.|.-+.++.-+. ..|+ ..+ + =.|.++|+.+|.||..+++.-|.=+ .+|+||+|+|.+-.
T Consensus 322 ~gPIqvIyDlVyGHADNQ~~~LLn-~~fl-kGP-n--MYGQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 322 TGPIQVIYDLVYGHADNQALDLLN-RRFL-KGP-N--MYGQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQD 392 (811)
T ss_pred CCCeEEEEeeecccccchhhHhhh-hhhc-cCC-c--cccccccccChHHHHHHHHHHHhhc-ccCCceeEeccccc
Confidence 78999999999999875443222 1121 111 1 1247899999999999999999988 99999999997653
No 41
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.70 E-value=9.7e-17 Score=152.45 Aligned_cols=96 Identities=42% Similarity=0.771 Sum_probs=81.6
Q ss_pred ceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCc
Q 047308 242 GLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYK 321 (878)
Q Consensus 242 Ga~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~ 321 (878)
||++.++| ++|+||||+|++|+|+||++++...+..+++|.+..++++|+|++.+++...|..|.|+|++.+.|..|.+
T Consensus 1 Ga~~~~~g-~~F~vwAP~A~~V~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~~ 79 (119)
T cd02852 1 GATIDAGG-VNFSVYSSNATAVELLLFDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGHR 79 (119)
T ss_pred CCeEeCCC-EEEEEECCCCCEEEEEEEeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCcccc
Confidence 78888877 99999999999999999987653444456777654455689999999999999999999998777778999
Q ss_pred cccceeecCcccccccc
Q 047308 322 SHLESVLLDPYAKIIVN 338 (878)
Q Consensus 322 ~~~~~~~~DPyA~~~~~ 338 (878)
+++.++++||||+++..
T Consensus 80 ~~~~~~~~DPYA~a~~~ 96 (119)
T cd02852 80 FDPSKVLLDPYAKAVSG 96 (119)
T ss_pred cCCCcEEECCCcCeEcC
Confidence 99999999999999863
No 42
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.66 E-value=4.4e-16 Score=144.09 Aligned_cols=92 Identities=30% Similarity=0.658 Sum_probs=78.2
Q ss_pred CCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCC
Q 047308 240 PMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDG 319 (878)
Q Consensus 240 ~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g 319 (878)
||||++.++| ++|+||||+|++|+|++|++.+. ..+++| .+.++|+|++.+++...|..|.|+|++..+|..|
T Consensus 1 plGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~~~---~~~~~m---~~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~~ 73 (103)
T cd02856 1 PLGATLDGEG-CNFAVHSENATRIELCLFDEDGS---ETRLPL---TEEYGGVWHGFLPGIKAGQRYGFRVHGPYDPERG 73 (103)
T ss_pred CCccEEeCCC-eEEEEECCCCCEEEEEEEeCCCC---EEEEEc---ccccCCEEEEEECCCCCCCEEEEEECCccCcccC
Confidence 5999999776 89999999999999999975432 235555 4567899999999999999999999997677788
Q ss_pred CccccceeecCcccccccc
Q 047308 320 YKSHLESVLLDPYAKIIVN 338 (878)
Q Consensus 320 ~~~~~~~~~~DPyA~~~~~ 338 (878)
.++++...++||||+++..
T Consensus 74 ~~~~~~~~~~DPYA~~~~~ 92 (103)
T cd02856 74 LRFNPAKLLLDPYARALDG 92 (103)
T ss_pred cccCCCeEEecCCcceEcC
Confidence 8888889999999999973
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.58 E-value=5.6e-15 Score=135.97 Aligned_cols=87 Identities=22% Similarity=0.437 Sum_probs=71.3
Q ss_pred CceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCC
Q 047308 241 MGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGY 320 (878)
Q Consensus 241 lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~ 320 (878)
|||++.++| ++|+||||+|++|+|+||++++...+..+++|. ++++|+|++.+++..+|..|.|++++. .
T Consensus 1 lGa~~~~~~-~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~m~---~~~~gvw~~~v~~~~~g~~Y~y~i~~~----~-- 70 (100)
T cd02860 1 LGAVYTPEK-TTFRLWAPTAQSVKLLLYDKDDQDKVLETVQMK---RGENGVWSVTLDGDLEGYYYLYEVKVY----K-- 70 (100)
T ss_pred CCCEEeCCC-EEEEEECCCCcEEEEEEEcCCCCCCcceeEeee---cCCCCEEEEEeCCccCCcEEEEEEEEe----c--
Confidence 799999876 999999999999999999876533444456664 578999999999999999999999864 1
Q ss_pred ccccceeecCccccccccC
Q 047308 321 KSHLESVLLDPYAKIIVNS 339 (878)
Q Consensus 321 ~~~~~~~~~DPyA~~~~~~ 339 (878)
+....++||||+++..+
T Consensus 71 --~~~~~~~DPyA~~~~~~ 87 (100)
T cd02860 71 --GETNEVVDPYAKALSAN 87 (100)
T ss_pred --eEEEEEcCcccEeEeeC
Confidence 23578999999999743
No 44
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.56 E-value=5.9e-15 Score=187.48 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCccc-CCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSF-DEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~-~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
.+||.+++++|+||++||||+|||+||++. ++..+||++.||+.+++.||+. ++|++||++||++||+||||
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~-------edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGE-------EGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCH-------HHHHHHHHHHHHCCCEEEEE
Confidence 589999999999999999999999999996 5566799999999999999975 99999999999999999999
Q ss_pred EecccCCC
Q 047308 479 VVFTRTAD 486 (878)
Q Consensus 479 vV~NH~~~ 486 (878)
+|+||++.
T Consensus 827 iV~NH~~~ 834 (1693)
T PRK14507 827 IVPNHMGV 834 (1693)
T ss_pred ecccccCC
Confidence 99999984
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.44 E-value=3.3e-13 Score=120.20 Aligned_cols=82 Identities=29% Similarity=0.598 Sum_probs=61.9
Q ss_pred CCceEEecC-CeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcC-CCCC-ceeEEEECCCcCC
Q 047308 240 PMGLSFSTD-GSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMES-TWNF-VSYGYRFKGSFSQ 316 (878)
Q Consensus 240 ~lGa~~~~~-g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~-~~~g-~~Y~y~i~~~~~~ 316 (878)
||||++.++ +.++|+||||+|++|.|+++.+. ..+..+++|.. +.++|+|++++++ ..+| ..|.|+|++.
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~--~~~~~~~~m~~--~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~--- 73 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG--SWPAEEYPMTR--KDDDGVWEVTVPGDLPPGGYYYKYRIDGD--- 73 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT--SSEEEEEEEEE--ECTTTEEEEEEEGCGTTTT-EEEEEEEET---
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee--cCCCceEEeee--cCCCCEEEEEEcCCcCCCCEEEEEEEEeC---
Confidence 699999987 66999999999999999998665 23345666631 4788999999994 4555 6999999976
Q ss_pred CCCCccccceeecCccc
Q 047308 317 GDGYKSHLESVLLDPYA 333 (878)
Q Consensus 317 ~~g~~~~~~~~~~DPyA 333 (878)
+| ....++||||
T Consensus 74 -~g----~~~~~~DPYA 85 (85)
T PF02922_consen 74 -DG----ETPEVVDPYA 85 (85)
T ss_dssp -TT----EEEEET-TT-
T ss_pred -CC----cEEEEeCCCC
Confidence 23 2578999997
No 46
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=5.8e-12 Score=112.43 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=59.7
Q ss_pred ceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCc
Q 047308 242 GLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYK 321 (878)
Q Consensus 242 Ga~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~ 321 (878)
||++.+++.++|+||||+|++|+|++|+ . ..++| .+.++|+|++.++++ .|..|.|++...
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~------~~~~m---~~~~~G~W~~~v~~~-~g~~Y~y~v~~~-------- 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-G------EEIPM---QRDGDGWFEAEVPGA-AGTRYRYRLDDG-------- 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-C------CcccC---ccCCCcEEEEEeCCC-CCCeEEEEECCC--------
Confidence 7888884449999999999999999985 1 12334 467889999999999 999999999842
Q ss_pred cccceeecCccccccc
Q 047308 322 SHLESVLLDPYAKIIV 337 (878)
Q Consensus 322 ~~~~~~~~DPyA~~~~ 337 (878)
..+.||||+++.
T Consensus 62 ----~~~~DP~a~~~~ 73 (85)
T cd02853 62 ----TPVPDPASRFQP 73 (85)
T ss_pred ----cCCCCCccccCC
Confidence 468999999975
No 47
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.28 E-value=4.7e-12 Score=156.79 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHC-CCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~-GI~VILD 478 (878)
-|+|.+..++|+|||+||+|.|||+||++.....+.|+..||+.++|.+|.. .++.++|++||+++|++ ||+||+|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~---~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQ---KDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhccc---CCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5999999999999999999999999999877666789999999999999852 23569999999999997 9999999
Q ss_pred EecccCCCCc
Q 047308 479 VVFTRTADGA 488 (878)
Q Consensus 479 vV~NH~~~~~ 488 (878)
+|+|||+.++
T Consensus 205 vV~NHTa~ds 214 (1464)
T TIGR01531 205 IVFNHTANNS 214 (1464)
T ss_pred eeecccccCC
Confidence 9999999863
No 48
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=8.7e-12 Score=143.98 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCccc-CCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSF-DEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~-~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
||....+.||||++|||.|+|++|||.. ++..+|||++|.-.++|..|+. +.|..||.++|++||++|+|+|
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~-------egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGE-------EGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcCh-------HHHHHHHHHHHhcCCceEEEec
Confidence 7999999999999999999999999986 5556799999999999999976 9999999999999999999999
Q ss_pred cccCCCC
Q 047308 481 FTRTADG 487 (878)
Q Consensus 481 ~NH~~~~ 487 (878)
+||++.+
T Consensus 90 PNHMav~ 96 (889)
T COG3280 90 PNHMAVG 96 (889)
T ss_pred ccchhcc
Confidence 9999874
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.14 E-value=1.6e-10 Score=105.88 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCeEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCC-------CCCceeEEEECCCcCCCCC
Q 047308 248 DGSLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMEST-------WNFVSYGYRFKGSFSQGDG 319 (878)
Q Consensus 248 ~g~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~-------~~g~~Y~y~i~~~~~~~~g 319 (878)
+++++|++|||+|++|+|+ .|++|+... ++| .+...|+|+++||++ .+|..|+|+|... +|
T Consensus 4 ~~g~~FrvwAP~A~~V~l~GdFn~W~~~~----~~m---~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~----~G 72 (99)
T cd02854 4 DGGVTYREWAPNAEEVYLIGDFNNWDRNA----HPL---KKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP----SG 72 (99)
T ss_pred CCeEEEEEECCCCCEEEEEccCCCCCCcC----ccc---EECCCCEEEEEECCcccccccCCCCCEEEEEEEeC----CC
Confidence 3458999999999999998 576664322 333 455689999999984 5899999999874 34
Q ss_pred CccccceeecCcccccccc
Q 047308 320 YKSHLESVLLDPYAKIIVN 338 (878)
Q Consensus 320 ~~~~~~~~~~DPyA~~~~~ 338 (878)
. ...++||||+.+..
T Consensus 73 ~----~~~~~DPyA~~~~~ 87 (99)
T cd02854 73 E----WIDRIPAWIKYVTQ 87 (99)
T ss_pred C----EEEEcCcceeEEEe
Confidence 3 46789999999874
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.97 E-value=2.5e-09 Score=99.06 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=62.6
Q ss_pred CCceEEecC---CeEEEEEEcCCCCeEEEEE-ecCCCCCCCceeeccCccccCC-CCEEEEEEcCCCCCceeEEEECCCc
Q 047308 240 PMGLSFSTD---GSLNFAIFSRHAQGVVLCL-YDDTTADRPALELDLDPYINRS-GDIWHASMESTWNFVSYGYRFKGSF 314 (878)
Q Consensus 240 ~lGa~~~~~---g~v~F~vwaP~A~~V~l~l-~~~~~~~~~~~~~~l~~~~~~~-~gvW~v~i~~~~~g~~Y~y~i~~~~ 314 (878)
.||+++.++ ++++|++|+|.|++|+|++ ++++... .++| .+.. .|+|++.++....+..|.|++...
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~----~~~m---~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~- 80 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGR----RHPM---RRRGDSGVWELFIPGLGEGELYKYEILGA- 80 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCc----ceec---EECCCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 599998873 4499999999999999996 5444222 2233 3444 899999999887777899999754
Q ss_pred CCCCCCccccceeecCcccccccc
Q 047308 315 SQGDGYKSHLESVLLDPYAKIIVN 338 (878)
Q Consensus 315 ~~~~g~~~~~~~~~~DPyA~~~~~ 338 (878)
+|. ...+.||||+.+..
T Consensus 81 ---~g~----~~~~~DPYa~~~~~ 97 (106)
T cd02855 81 ---DGH----LPLKADPYAFYSEL 97 (106)
T ss_pred ---CCC----EEEeeCCCceeeEe
Confidence 222 35678999999874
No 51
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.71 E-value=4.3e-08 Score=87.52 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=48.4
Q ss_pred cCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCC-ceeEEEECCCcCCCCCCccccc
Q 047308 247 TDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNF-VSYGYRFKGSFSQGDGYKSHLE 325 (878)
Q Consensus 247 ~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g-~~Y~y~i~~~~~~~~g~~~~~~ 325 (878)
++++++|+||||.|++|.|+++.+. . ..++| .+...|+|+++++...++ ..|.|++++
T Consensus 4 ~~~~v~F~vwAP~A~~V~L~~~~~~-~----~~~~m---~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg------------- 62 (85)
T cd02858 4 ADRTVTFRLFAPKANEVQVRGSWGG-A----GSHPM---TKDEAGVWSVTTGPLAPGIYTYSFLVDG------------- 62 (85)
T ss_pred CCCcEEEEEECCCCCEEEEEeecCC-C----ccEeC---eECCCeEEEEEECCCCCcEEEEEEEECC-------------
Confidence 4556999999999999999986431 1 12444 456689999999655444 345555543
Q ss_pred eeecCccccccc
Q 047308 326 SVLLDPYAKIIV 337 (878)
Q Consensus 326 ~~~~DPyA~~~~ 337 (878)
..++||+++...
T Consensus 63 ~~~~DP~s~~~~ 74 (85)
T cd02858 63 VRVIDPSNPTTK 74 (85)
T ss_pred eEecCCCCCcee
Confidence 367899988654
No 52
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.57 E-value=1.6e-07 Score=106.07 Aligned_cols=89 Identities=25% Similarity=0.356 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHH-HCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLH-ANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH-~~GI~VILD 478 (878)
-|.|....++|..++++|+|.|++.|+++.+.....|...|.+..++.+..+ ....+.+++++||++++ +.||.+|.|
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~-~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPP-GKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCC-CccccHHHHHHHHHHHHHHcCceEEEE
Confidence 4899999999999999999999999999998877789999999999998876 23357899999999996 699999999
Q ss_pred EecccCCCCcC
Q 047308 479 VVFTRTADGAL 489 (878)
Q Consensus 479 vV~NH~~~~~~ 489 (878)
||+|||+.++.
T Consensus 97 vV~NHtA~nS~ 107 (423)
T PF14701_consen 97 VVLNHTANNSP 107 (423)
T ss_pred EeeccCcCCCh
Confidence 99999998643
No 53
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.40 E-value=1e-06 Score=80.20 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred CCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCC--cEEEEcCCCCCCCeEEEEccCCCCC-CCCccCCCCcee
Q 047308 776 DPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADH--SESVVLPPPPEGMTWHHLVDTALPF-PGFFSTEGKPVL 852 (878)
Q Consensus 776 ~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~--~~~~~Lp~~~~g~~W~~l~dt~~~~-~~~~~~~~~~~~ 852 (878)
+.+++++||.|.+.. .+ .++||+|++++ ...+.++. |.++.|+++++|+... +|........+.
T Consensus 6 d~~~~v~af~R~~~~-----------~~-~~lvv~Nf~~~~~~~~~~~~~-p~~g~y~~vlnsd~~~~~g~~~~~~~~v~ 72 (95)
T PF02806_consen 6 DNENNVIAFERKDKG-----------DD-RVLVVFNFSPEAVYEDYRIGV-PEAGRYKEVLNSDDEEYGGSGKGNSGEVT 72 (95)
T ss_dssp EESSSEEEEEETTTE-----------TT-EEEEEEESSSS-EEEEEEECS-SSSEEEEETTTTTCEEEEESSCSETSEEE
T ss_pred cCCCCEEEEEEcCCC-----------CC-EEEEEEECCCcccceeEEeCC-CCcceeeEEeCCCccEECCcccccCceEE
Confidence 346799999997531 24 89999999998 45565554 4367999999998643 332222122223
Q ss_pred eecCceEEEEEcCcEEEEEEEc
Q 047308 853 EQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 853 ~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
...++..+++|||+|++||..+
T Consensus 73 ~~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 73 VDSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp EETTSEEEEEESTTEEEEEEEE
T ss_pred EeeCCEEEEEECCCEEEEEEEc
Confidence 4456778999999999999864
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.26 E-value=5e-06 Score=92.11 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCC-CCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPS-RGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~-~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
+-..+.+.|+.|+++|+|+|.+-=--..+. +-+.++ .|-+.+-+. ......-+-|+.||++||++||+|.-=+.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda----~Y~S~~-~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~ 91 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDA----LYPSDI-EPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFR 91 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEE----Eecccc-cccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEE
Confidence 567788889999999999999743221110 112222 112222111 00000246799999999999999987665
Q ss_pred cccCCCC--cCCCCCCCCCccccCC-------CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 481 FTRTADG--ALQGIDDSSYYYAHRG-------EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 481 ~NH~~~~--~~~~~d~~~yY~~~~~-------~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
++..... .+.. .++.++..... ...+...-||..+|+||++|++.++--++.|.|||+.||..-
T Consensus 92 ~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~ 164 (311)
T PF02638_consen 92 VGFNAPDVSHILK-KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYF 164 (311)
T ss_pred eecCCCchhhhhh-cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccc
Confidence 5443321 1111 12233221110 011223468999999999999999999999999999999543
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.18 E-value=2.2e-06 Score=105.38 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCCceEEecCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCC
Q 047308 239 SPMGLSFSTDGSLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQG 317 (878)
Q Consensus 239 ~~lGa~~~~~g~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~ 317 (878)
..||||....| +.|+||||+|++|+|+ .|++ . ...+|.. ..+.|+|++.|| ...+..|+|+|..
T Consensus 19 ~~lGah~~~~g-~~f~vwaP~A~~V~vvgdfn~--~----~~~~m~~--~~~~G~w~~~ip-~~~g~~YKy~i~~----- 83 (726)
T PRK05402 19 SVLGPHPTGAG-LVVRALLPGAEEVWVILPGGG--R----KLAELER--LHPRGLFAGVLP-RKGPFDYRLRVTW----- 83 (726)
T ss_pred HhcCCCCCCCc-EEEEEECCCCeEEEEEeecCC--C----ccccceE--cCCCceEEEEec-CCCCCCeEEEEEe-----
Confidence 46999998887 8999999999999998 4652 1 1223321 236799999999 9999999999974
Q ss_pred CCCccccceeecCcccccc
Q 047308 318 DGYKSHLESVLLDPYAKII 336 (878)
Q Consensus 318 ~g~~~~~~~~~~DPyA~~~ 336 (878)
+|. .....||||+..
T Consensus 84 ~g~----~~~k~DPyaf~~ 98 (726)
T PRK05402 84 GGG----EQLIDDPYRFGP 98 (726)
T ss_pred CCc----eeEeccccccCC
Confidence 233 467899999954
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.15 E-value=1.7e-05 Score=76.65 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCC--CCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGP--YFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~g--Y~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~ 485 (878)
+-+++||++|+|+|.+.- ..++| |.|+.-....+.+. . +-|+++|++||++||+|+.=+-++ .
T Consensus 4 ~~~~~lk~~~v~si~i~a-----~~h~g~ayYPt~~~~~hp~L~-~-------Dllge~v~a~h~~Girv~ay~~~~--~ 68 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFA-----KCHGGYAYYPTKVGPRHPGLK-R-------DLLGEQVEACHERGIRVPAYFDFS--W 68 (132)
T ss_pred HHHHHHHHhCCCEEEEEc-----ccccEEEEccCCCCcCCCCCC-c-------CHHHHHHHHHHHCCCEEEEEEeee--c
Confidence 457999999999999822 22233 45555444444444 2 789999999999999999554444 2
Q ss_pred CCcCCCCCCCCCccccCCCC-------CCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 486 DGALQGIDDSSYYYAHRGEG-------IETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 486 ~~~~~~~d~~~yY~~~~~~~-------~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
++. ....+|.|+..+..+. ...+....+-|...+++++..++--++.|.+|||=||
T Consensus 69 d~~-~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D 131 (132)
T PF14871_consen 69 DED-AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYDVDGIFFD 131 (132)
T ss_pred ChH-HHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCCCCEEEec
Confidence 111 1123577776654221 0011112233345679999999999989999999987
No 57
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.03 E-value=2e-05 Score=69.76 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCc-eeEEEECCCcCCCCCCcccccee
Q 047308 250 SLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFV-SYGYRFKGSFSQGDGYKSHLESV 327 (878)
Q Consensus 250 ~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~-~Y~y~i~~~~~~~~g~~~~~~~~ 327 (878)
.++|++|+|.|++|.|+ .|++|+ .++| .+...|+|+++++ ...|. .|+|.+++. ..
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~------~~~m---~~~~~G~w~~~~~-l~~G~y~Ykf~vdg~------------~~ 60 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN------AIPM---EREGDGLWVVTVE-LRPGRYEYKFVVDGE------------WV 60 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC------cccC---EECCCCcEEEEEe-CCCCcEEEEEEECCE------------Ee
Confidence 58999999999999998 677774 1333 3445589999997 44455 788888654 23
Q ss_pred ecCccccccc
Q 047308 328 LLDPYAKIIV 337 (878)
Q Consensus 328 ~~DPyA~~~~ 337 (878)
+.||.+....
T Consensus 61 ~~DP~~~~~~ 70 (82)
T cd02861 61 IVDPNAAAYV 70 (82)
T ss_pred eCCCCCCcee
Confidence 5899988765
No 58
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.01 E-value=2.8e-05 Score=68.02 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCC-CCceeEEEECCC
Q 047308 250 SLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTW-NFVSYGYRFKGS 313 (878)
Q Consensus 250 ~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~-~g~~Y~y~i~~~ 313 (878)
.++|+||||.|++|.|+++.+... ..++| .+..+|+|++.++... .+..|+|++.+.
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~----~~~~~---~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~ 62 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDT----QLIPM---TKVEDGYWEVELPLPSPGKYQYKYVLDGG 62 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCC----CcccC---EECCCceEEEEEcCCCCCCeEEEEEEeCC
Confidence 489999999999999998754311 22334 4567799999999888 889999999876
No 59
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.92 E-value=2.7e-05 Score=69.84 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhccCCccccCCCCCCCCc-cCCCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCC
Q 047308 747 FISFLSSFRLKRKENIDWHGSDHSPPRW-EDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPP 825 (878)
Q Consensus 747 f~k~Li~LRk~~~~~i~~~g~~~~~~~~-~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~ 825 (878)
|||+||+|||++ +.+. .+ +.....+ .+....++++.|.++ ++.++|++|++++++++.
T Consensus 1 ~yr~Li~LRr~~-PaL~-~~-~~~~~~~~~~~~~~l~~~~r~~~-------------~~~l~v~~Nls~~~~~~~----- 59 (89)
T PF11941_consen 1 FYRRLIALRRQH-PALR-DG-DFRFLEVERDAPDALLAFRRTGG-------------GERLLVAFNLSDEPVTVP----- 59 (89)
T ss_dssp HHHHHHHHHHHH-THHC-CS-EEEEEEEEEEEETTEEEEEEEET-------------TEEEEEEEE-SSS-EEEE-----
T ss_pred CHHHHHHHHhhC-cccc-CC-CcccEEEEecCCCEEEEEEEEcC-------------CceEEEEEecCCCcEEcc-----
Confidence 789999999998 1111 11 0001111 122446777777543 679999999999988887
Q ss_pred CCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEE
Q 047308 826 EGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLF 871 (878)
Q Consensus 826 ~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl 871 (878)
....|+.++.+.... ..+ .++|||+|++||
T Consensus 60 ~~~~~~~l~~s~~~~--------------~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 60 EGPWGEVLFSSEPAR--------------AGG--AGTLPPWSVVVL 89 (89)
T ss_dssp TSCCEEEEEECSCSS--------------E----EEEE-TTEEEEE
T ss_pred CCCCCeEEEcCCCcc--------------ccc--CceECCCEEEEC
Confidence 223567777666421 111 788999999986
No 60
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=97.69 E-value=0.0001 Score=73.51 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHhhc-----------cCCccccCCCCCCCCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEe
Q 047308 743 QITEFISFLSSFRLKR-----------KENIDWHGSDHSPPRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACN 811 (878)
Q Consensus 743 ~l~~f~k~Li~LRk~~-----------~~~i~~~g~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N 811 (878)
.+.++++.|++||+++ ...+.||... + +....+|+|...+....+ .+.+...+.++||||
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G---~---~q~pGvIvM~idDg~~~~---~dlD~~~~~iVVvfN 112 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTG---P---DQTPGVIVMSIDDGAGVG---ADLDPNYDGIVVVFN 112 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-S---T---T--TTEEEEEEE-SCSSS---S-S-SSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCC---C---CCCCcEEEEEecCCCccc---cccCCccCeEEEEEe
Confidence 4689999999999997 2345666432 1 124589999997632111 123445678999999
Q ss_pred CCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 812 AADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 812 ~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
.+++.+++.+|... | |+.----.... ..... .. .-....++++|||+|++||+..
T Consensus 113 at~~~~t~~~~~~~-g--~~Lhpvq~~~~-D~~v~-~a---~~~~~~G~~tVPa~T~aVFv~~ 167 (168)
T PF11852_consen 113 ATPEEQTFTVPGLA-G--FQLHPVQAESS-DPVVK-QA---SFDAANGTFTVPARTVAVFVQP 167 (168)
T ss_dssp -SSS-EEEETGGGS-S---EE-HHHHTGS-GTTGG-GT---EEETTTTEEEE-TTEEEEEEEE
T ss_pred CCCCeEEEEcCCcC-c--eEechHHhccc-chhhh-ce---eEecCCCeEEECCceEEEEEec
Confidence 99999999998643 3 54432211100 00010 00 1112246899999999999975
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.0004 Score=78.75 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCC-----CCCCCCcchHHHHHHHHHHHHHCCCE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLH-----GPSRGSISAINSMKEMVKKLHANGIE 474 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~y-----Gt~~~~~~~i~elk~LV~~aH~~GI~ 474 (878)
..+=..+.+.|+.|+.||||+|+..=.-..+.- | +.. .+|-..+ |.. .--+-|+.+|++||++||+
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~l---y-pS~-~~p~s~~~~~~~~~~----~g~DpLa~~I~~AHkr~l~ 130 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTVYPQVWNDGDAL---Y-PSA-VLPWSDGLPGVLGVD----PGYDPLAFVIAEAHKRGLE 130 (418)
T ss_pred cccHHHHHHHHHHHHHcCCceeEEEEecCcccc---c-ccc-ccccccCcCcccCCC----CCCChHHHHHHHHHhcCCe
Confidence 355678888999999999999997433221110 1 110 1111111 111 1125699999999999999
Q ss_pred EEEEEecccCCCC----------cCCCC-CCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 475 VLLEVVFTRTADG----------ALQGI-DDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 475 VILDvV~NH~~~~----------~~~~~-d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
|+-=+-+--++.. ++... ++.-|+..+++ ....-||-.+|+||++|.+.+.--++.|.|||..||.
T Consensus 131 v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 131 VHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGW---GKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred eeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCc---eeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecce
Confidence 9976655555542 11111 11123322221 0234588999999999999999999999999999996
Q ss_pred Ccc
Q 047308 544 ASS 546 (878)
Q Consensus 544 a~~ 546 (878)
--.
T Consensus 208 ~fy 210 (418)
T COG1649 208 YFY 210 (418)
T ss_pred eec
Confidence 544
No 62
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.30 E-value=0.00057 Score=79.97 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCC--------CCCCCCCCCCCcc
Q 047308 374 MEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQ--------KGPYFPRHFFSPT 445 (878)
Q Consensus 374 ~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~--------~~gY~~~~yfa~d 445 (878)
....||||=+-- |..-+.. ...-|..-|++..+-+|++|||..||-|-+.+... ..||.-.|=|.+-
T Consensus 562 LDSqvIYEgFSN-FQ~~~t~----~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg 636 (809)
T PF02324_consen 562 LDSQVIYEGFSN-FQDFPTT----PSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLG 636 (809)
T ss_dssp HHT-EEEE---T-TB---SS----GGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SS
T ss_pred hhcchhhccccc-cccCCCC----hHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhc
Confidence 456899996421 2221110 11246778888899999999999999998876433 2467665544432
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 446 KLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 446 ~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
- + .+..+|+.+||+.-|+++|+.||+||-|+|++....
T Consensus 637 ~--s-~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 637 M--S-KPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp S--S-S-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred C--C-CCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 1 1 134556779999999999999999999999998753
No 63
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00042 Score=82.56 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHH-CCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHA-NGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~-~GI~VILD 478 (878)
-|.+.....+|.-.|+-|+|.|.+.|+++-......|.-.|-..+++.+..++. .=+.+|.++||+.||+ -+|--|-|
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~-k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNR-KYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCC-CCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 477888889999999999999999999998776666776665555555553211 1135999999999997 49999999
Q ss_pred EecccCCCC
Q 047308 479 VVFTRTADG 487 (878)
Q Consensus 479 vV~NH~~~~ 487 (878)
||+|||+.+
T Consensus 217 vV~NHtAnn 225 (1521)
T KOG3625|consen 217 VVYNHTANN 225 (1521)
T ss_pred hhhhccccC
Confidence 999999986
No 64
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.13 E-value=0.0037 Score=71.41 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCcc-CCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPT-KLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d-~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
-..+.+.++.++++|++.+.|===+-.... ..+....-..++ .+|- +.|+.|++.+|++||+.=|=+-+
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~-~d~~~~GdW~~~~~kFP---------~Gl~~l~~~i~~~Gmk~GlW~eP 126 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRD-DDNAGLGDWEPDPKKFP---------NGLKPLADYIHSLGMKFGLWFEP 126 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTES-TTTSTTSBECBBTTTST---------THHHHHHHHHHHTT-EEEEEEET
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccC-CCcccCCceeEChhhhC---------CcHHHHHHHHHHCCCeEEEEecc
Confidence 456677788889999998887100000000 001111112344 2443 56999999999999999998877
Q ss_pred ccCCCCcCCCCCCCCCccccCCC-C--CCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCccc
Q 047308 482 TRTADGALQGIDDSSYYYAHRGE-G--IETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSL 547 (878)
Q Consensus 482 NH~~~~~~~~~d~~~yY~~~~~~-~--~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l 547 (878)
--++.++-....+++|....+.. . ...+..||+.+|+|+++|.+.+.-.++++|||.|.+|.-..+
T Consensus 127 e~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 127 EMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp TEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred ccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 76666543333456666443211 1 112235999999999999999999999999999999965443
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.05 E-value=0.0035 Score=69.46 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCC-CCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 401 GTFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPR-HFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~-~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
-+-+.+.+.++.++++|| +.|+|=- +|... .-|..++ +|- +.++||+++|++|++++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~---------~w~~~~g~f~~d~~~FP----------dp~~mi~~l~~~G~k~~ 87 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDD---------NWETCYGDFDFDPTKFP----------DPKGMIDQLHDLGFRVT 87 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCC---------CccccCCccccChhhCC----------CHHHHHHHHHHCCCeEE
Confidence 356778888999999995 5666621 12111 1133333 342 58999999999999999
Q ss_pred EEEecccCCCC--cCCCCCCCCCccccCCC---C----C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 477 LEVVFTRTADG--ALQGIDDSSYYYAHRGE---G----I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 477 LDvV~NH~~~~--~~~~~d~~~yY~~~~~~---~----~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+=+-+ +.+.+ .+......+|+..+..+ . + +...-+|+.||++|+++.+.++..+.++|||||-+|..
T Consensus 88 l~i~P-~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 164 (303)
T cd06592 88 LWVHP-FINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAG 164 (303)
T ss_pred EEECC-eeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCC
Confidence 87776 33332 12222223455433211 0 0 22356899999999999999999999999999999953
No 66
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.93 E-value=0.0035 Score=69.55 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhcC--CCeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDLG--VNAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LG--vt~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-..+.+.++.+++.| ++.|+|=.=+. .+|.-. -|..++ +|. +.++||+++|++||+|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~-----~~~~~~-~f~~d~~~FP----------d~~~~i~~l~~~G~~~~~ 84 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWM-----KEFQWC-DFEFDPDRFP----------DPEGMLSRLKEKGFKVCL 84 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccc-----cCCcce-eeEECcccCC----------CHHHHHHHHHHCCCeEEE
Confidence 45677888899999999 66677733221 012111 234443 453 479999999999999999
Q ss_pred EEecccCCCCc--CCCCCCCCCccccCCCC------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcc
Q 047308 478 EVVFTRTADGA--LQGIDDSSYYYAHRGEG------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASS 546 (878)
Q Consensus 478 DvV~NH~~~~~--~~~~d~~~yY~~~~~~~------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~ 546 (878)
-+.+ +...++ +......+|+..+..+. | +...-+|+.||++|+++.+.++.++ ++|||||-+|....
T Consensus 85 ~~~P-~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~e~ 160 (308)
T cd06593 85 WINP-YIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFGER 160 (308)
T ss_pred EecC-CCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCCCC
Confidence 8875 454321 11111234444322110 1 1235689999999999999999988 69999999996543
No 67
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.55 E-value=0.019 Score=68.19 Aligned_cols=135 Identities=10% Similarity=0.235 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCcc-----CCCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPT-----KLHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d-----~~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
+.....+.|+.|+..-||.||+ ++....+ ...+..+ ..+-.-....-...-+|.+|++||+.||++|
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QF---YDW~~rH-----~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam 187 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQF---YDWMYRH-----HKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAM 187 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEE---TS--SBT-----TB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEE
T ss_pred CchhHHHHHHHHHhhCcCeEEE---Eeecccc-----CCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCccee
Confidence 5677788899999999999998 3322111 1111111 1221111223345889999999999999998
Q ss_pred E-EEecccCCCCcCCCCCCCCCcc-ccCCC----------CCCc-ccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 477 L-EVVFTRTADGALQGIDDSSYYY-AHRGE----------GIET-TNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 477 L-DvV~NH~~~~~~~~~d~~~yY~-~~~~~----------~~~~-~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
. .++|. ...+....-..+.|+. .++.. .|.. .--+|..|+.-|++|++-+...++++|+|||.+|.
T Consensus 188 ~Ynmiya-a~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq 266 (559)
T PF13199_consen 188 AYNMIYA-ANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQ 266 (559)
T ss_dssp EEEESSE-EETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-
T ss_pred hhHhhhc-cccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeec
Confidence 6 23331 1111111111233432 22211 1111 34468899999999999999999999999999997
Q ss_pred Cc
Q 047308 544 AS 545 (878)
Q Consensus 544 a~ 545 (878)
..
T Consensus 267 ~G 268 (559)
T PF13199_consen 267 LG 268 (559)
T ss_dssp S-
T ss_pred cC
Confidence 66
No 68
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.48 E-value=0.005 Score=69.35 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCC----CCCCCCC------CCC----CCccCCCCCCCCCcchHHHHHHHH
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDE----QKGPYFP------RHF----FSPTKLHGPSRGSISAINSMKEMV 465 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~----~~~gY~~------~~y----fa~d~~yGt~~~~~~~i~elk~LV 465 (878)
+-+.+.+.++.+++.|| +.|+|-+-+.... .+..|.+ ..| |.+..+| -+.++||
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~F----------Pdp~~mi 91 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRW----------PNPKGMI 91 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccC----------CCHHHHH
Confidence 56778888899998886 6788753211000 0001111 000 1111122 3689999
Q ss_pred HHHHHCCCEEEEEEecccCCCC---------cCCCCCCCCCccccCCC------C-C-CcccccCCCCHHHHHHHHHHHH
Q 047308 466 KKLHANGIEVLLEVVFTRTADG---------ALQGIDDSSYYYAHRGE------G-I-ETTNVLNCNYPTVQQMILNSLR 528 (878)
Q Consensus 466 ~~aH~~GI~VILDvV~NH~~~~---------~~~~~d~~~yY~~~~~~------~-~-~~~~dln~~~p~Vr~~iid~l~ 528 (878)
+++|++|++|++=+.+ +...+ .+......+|+..+..+ . | +...-+|+.||++|+...+-++
T Consensus 92 ~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~ 170 (340)
T cd06597 92 DELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRR 170 (340)
T ss_pred HHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHH
Confidence 9999999999985544 22110 00001112444333211 0 1 1235699999999999999999
Q ss_pred HHHHhcCccEEEEccCc
Q 047308 529 HWVTEFHIDGFCFINAS 545 (878)
Q Consensus 529 ~Wl~e~gVDGFRfD~a~ 545 (878)
++++++|||||-+|...
T Consensus 171 ~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 171 YLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHhcCCcEEEecCCC
Confidence 99988999999999554
No 69
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.20 E-value=0.011 Score=51.81 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecC
Q 047308 777 PDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMA 856 (878)
Q Consensus 777 ~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~ 856 (878)
+.+++++|.|..+ ++.++|++|.+++++++++.. +.+++...... .++.. +..+ .
T Consensus 7 P~~gvYvYfR~~~-------------~~tVmVilN~n~~~~~ldl~r------y~E~l~~~~~~-~dilt-g~~i----~ 61 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-------------GKTVMVILNKNDKEQTLDLKR------YAEVLGGFTSA-KDILT-GKTI----D 61 (78)
T ss_dssp -BTTEEEEEEEES-------------SEEEEEEEE-SSS-EEEEGGG------GHHHHTT--EE-EETTT---EE----E
T ss_pred ccCCEEEEEEEcC-------------CCEEEEEEcCCCCCeEEcHHH------HHHhhCCCcce-EECCC-CCEE----e
Confidence 4678999999875 789999999999999999853 33333322211 01111 1111 1
Q ss_pred ceEEEEEcCcEEEEEEE
Q 047308 857 GLYTYEMKPYSCTLFEA 873 (878)
Q Consensus 857 ~~~~~~vp~~S~~Vl~~ 873 (878)
-..+++|||++++||+.
T Consensus 62 l~~~l~l~~~~~~ILel 78 (78)
T PF10438_consen 62 LSKNLTLPPKSVLILEL 78 (78)
T ss_dssp -SSEEEE-TTEEEEEEE
T ss_pred cCCcEEECCCceEEEEC
Confidence 12378999999999973
No 70
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.17 E-value=0.019 Score=64.05 Aligned_cols=126 Identities=11% Similarity=0.136 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCcc-CCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 404 SGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPT-KLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 404 ~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d-~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
+.+.+.++.+++.|| +.|+|-+=+... .+++ ..-|.-+ .+|- +.++||+++|++|++|++-+.
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~--~~~f~~d~~~FP----------dp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGK--RYVFNWNKDRFP----------DPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc--CCCc--eeeeecCcccCC----------CHHHHHHHHHHCCCEEEEEeC
Confidence 467777888998886 677774211100 0000 0113333 2343 588999999999999998554
Q ss_pred cccCCCC--cCCCCCCCCCccccCCCC-------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 481 FTRTADG--ALQGIDDSSYYYAHRGEG-------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 481 ~NH~~~~--~~~~~d~~~yY~~~~~~~-------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+- ...+ .+......+|+..+..+. + +...-+|+.||++|++..+.++.-+.+.|||||=+|..
T Consensus 95 P~-i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 95 PG-LLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred Cc-ccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 43 3322 121112234443321110 1 12246899999999999999977777999999999954
No 71
>smart00632 Aamy_C Aamy_C domain.
Probab=96.09 E-value=0.045 Score=48.32 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=47.3
Q ss_pred CCcEEEEEEecccccccccccCCCCCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeec-C
Q 047308 778 DCKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQM-A 856 (878)
Q Consensus 778 ~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~-~ 856 (878)
.+++|+|.|. +..+|++|.+...++..+......+.|++++.... .+.. +... +
T Consensus 7 ~~~~laF~Rg----------------~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~--------~g~~-v~V~~~ 61 (81)
T smart00632 7 GDNQIAFERG----------------SKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLC--------TGKS-VTVGSN 61 (81)
T ss_pred CCeEEEEECC----------------CeEEEEEECCCCceEEEEeecCCCcceEEEecCcc--------cCCE-EEECCC
Confidence 4459999993 45789999998877777644223357988887521 1111 2333 5
Q ss_pred ceEEEEEcCcE-EEEEE
Q 047308 857 GLYTYEMKPYS-CTLFE 872 (878)
Q Consensus 857 ~~~~~~vp~~S-~~Vl~ 872 (878)
+..+++|||++ ++|+.
T Consensus 62 G~~~~~l~~~~~v~i~~ 78 (81)
T smart00632 62 GIATFTLPAGGAVAIHV 78 (81)
T ss_pred CEEEEEECCCCeEEEEE
Confidence 77899999999 66665
No 72
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.08 E-value=0.045 Score=60.63 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCC--CCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKG--PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~--gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.|+=..+.+.|+.|++-|+|+|.+ +.....| .|....- .....|.. ...+.++++||+.||++||.+|-
T Consensus 9 a~~~~~~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~--~~~~~ga~---~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 9 AGSPERLDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVP--LAREIGAV---KPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEE----EEecCCceEEecCCCc--hhhhcccc---cccccCHHHHHHHHHHCCCEEEE
Confidence 355556677799999999999987 5444332 2433211 11223322 11258999999999999999999
Q ss_pred EEecccCCCCcCCCCCCCCCccccCCC----CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 478 EVVFTRTADGALQGIDDSSYYYAHRGE----GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 478 DvV~NH~~~~~~~~~d~~~yY~~~~~~----~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
=+|. -.+......++.|......+ +.....=+|.-+++|++|+++.+.-.. ..|+|..-||-+.
T Consensus 80 RIv~---FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYIR 147 (316)
T PF13200_consen 80 RIVV---FKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYIR 147 (316)
T ss_pred EEEE---ecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeeee
Confidence 8874 11211111134454422111 111223467788999999999999988 8899999999543
No 73
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=95.84 E-value=0.05 Score=64.37 Aligned_cols=288 Identities=16% Similarity=0.154 Sum_probs=132.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHH---------hcCccEEEEccCcccccccccccCCchhHHHHH-HcCc---cccccE
Q 047308 509 TNVLNCNYPTVQQMILNSLRHWVT---------EFHIDGFCFINASSLLRGFHGEYLSRPPLIEAI-AFDP---LLSKAK 575 (878)
Q Consensus 509 ~~dln~~~p~Vr~~iid~l~~Wl~---------e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~i-a~d~---~~~~~~ 575 (878)
.+|++-.||.|+..-+.++.|.+. +..+||||+|++.++--+..+.. ..+.++. ..+. .-.+-+
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia---~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIA---GDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHH---HHHHHHHH-TTTBHHHHCTC-
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHH---HHHHHHHhCCCcChhhHhhhh
Confidence 378899999999999999999996 78899999999988765443211 0112221 1111 001224
Q ss_pred EEeecCCCCCCCC-CCCCCCcccchhhhhhHHHHHHHHHHhcCC----cHHHHHHH-HcC-CCcccCCCCCCceeeeeec
Q 047308 576 LIADYWDPHGVAP-KDTRFPHWKRWAELNTNFCNDVRNFFRGEG----LLSDLATR-LCG-SGDIFSDGRGPAFSFNYIA 648 (878)
Q Consensus 576 ligE~w~~~~~~~-~~~~~~~~~~~~~~n~~f~d~ir~~l~g~~----~~~~~~~~-l~~-s~~~f~~~~~~~~~inyi~ 648 (878)
-|-|.|....... ...+-+. -.|+..++-.+...|.... .++.+... |.. ..+--. ......-.||.
T Consensus 220 SilE~ws~nd~~y~~~~g~~q----L~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e--n~a~pNYsFvr 293 (809)
T PF02324_consen 220 SILEAWSSNDPDYVKDTGNPQ----LTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE--NEAQPNYSFVR 293 (809)
T ss_dssp -EESSSTTTHHHHHHHTTSSS----BEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S--SESS-EEEES-
T ss_pred eeeeccccCChHHHhcCCCce----eeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC--CcccCceeeee
Confidence 5669998643221 1111111 2356667777766665532 12222221 110 001000 11223456899
Q ss_pred cCCCCC---ccccccccCCCCCCcccccCCCCCCCCchHHHHHHH----------------HHHHHHHHHHHhcC-Ccee
Q 047308 649 RNTGLP---LVDLVSFSGGGLASELSWNCGEEGPTTKTAVLERRL----------------KQIRNFLFVLYVSL-GVPI 708 (878)
Q Consensus 649 ~HD~~t---L~D~v~~~~~~~~~~~swn~g~~G~t~~~~~~~~r~----------------~~~rla~allltsp-GiP~ 708 (878)
+||..- +.+++.-..+. ...|.+-....+...+ -.+-.+.++||+=- -+|-
T Consensus 294 AHDsevQ~vI~~II~~~i~~---------~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTVPR 364 (809)
T PF02324_consen 294 AHDSEVQTVIAQIIKDKINP---------NSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTVPR 364 (809)
T ss_dssp BSSTTTHHHHHHHHHHHT-T---------TTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSEEE
T ss_pred cccHHHHHHHHHHHHhhcCC---------cccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCCce
Confidence 999752 11222211110 0011111111111111 12556777888755 8999
Q ss_pred EecchhccccCCCCCCCCCCCCCCccccccCCCccHHHHHHHHHHHHhhc---cCCccccCCCCCCCCccCCCCcEEEEE
Q 047308 709 LNMGDECGQSSWGSPSYADRKPFDWNALATGFGIQITEFISFLSSFRLKR---KENIDWHGSDHSPPRWEDPDCKFLAMR 785 (878)
Q Consensus 709 Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~~~~~~l~~f~k~Li~LRk~~---~~~i~~~g~~~~~~~~~~~~~~vlaf~ 785 (878)
+||||=+--.+. | | ......++-+-.|++-|.+. ...+..+ -.......+|.=.
T Consensus 365 VYYGDLYtDdGQ----Y-----M-------a~KSpYyDaI~tLLKaRikYvaGGQtM~~~-------~~~~~~~~vLtSV 421 (809)
T PF02324_consen 365 VYYGDLYTDDGQ----Y-----M-------ATKSPYYDAITTLLKARIKYVAGGQTMAVT-------YLNGDNSGVLTSV 421 (809)
T ss_dssp EEHHHHBESSSS----T-----T-------TSB-TTHHHHHHHHHHHHHH--S-EEEEE---------EEETTTSEEEEE
T ss_pred EEecccccccch----h-----h-------hhcCchHHHHHHHHHHHHHhhcCCceeeee-------cccCCCCceEEEE
Confidence 999998765431 1 1 01133577788899999887 1111111 0001234699888
Q ss_pred Eeccccccc-ccccCCCCCCeEEEEEeCCCC-----cEEEEc--CCCCCCCeEEEEccCC
Q 047308 786 LKVDKAESQ-LSSESSQTKGDLYIACNAADH-----SESVVL--PPPPEGMTWHHLVDTA 837 (878)
Q Consensus 786 R~~~~~~~~-~~~~~~~~~~~llVv~N~s~~-----~~~~~L--p~~~~g~~W~~l~dt~ 837 (878)
|.+..+-.+ +........+-+.|++...+. ..++.| .....+-.+|-|+.|.
T Consensus 422 RyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ~YR~llltT 481 (809)
T PF02324_consen 422 RYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQAYRPLLLTT 481 (809)
T ss_dssp E-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-EEEEEEEEE
T ss_pred ecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccccchhhhhcc
Confidence 887643322 111222223335555444443 124444 3344556788777664
No 74
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.83 E-value=0.34 Score=63.26 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCC----CCCCCCCCCCccC
Q 047308 397 PDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQK----GPYFPRHFFSPTK 446 (878)
Q Consensus 397 ~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~----~gY~~~~yfa~d~ 446 (878)
..+.|||..+.+-++.+++.|.+.|+|+|+....... .+|.|.+=|+.++
T Consensus 739 ~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNp 792 (1221)
T PRK14510 739 PWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNP 792 (1221)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccCh
Confidence 3567999999999999999999999999998753322 4566655555443
No 75
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=95.71 E-value=0.019 Score=64.08 Aligned_cols=128 Identities=12% Similarity=0.135 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDL--GVNAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~L--Gvt~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-..+.+.++.+++. -+++|+| +..... .|. ..-|..++ +|- +.++||+++|++|++||+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~l----D~~~~~-~~~-~~~f~~d~~~FP----------dp~~mi~~L~~~G~kv~~ 84 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQ----DWFYWP-KQG-WGEWKFDPERFP----------DPKAMVRELHEMNAELMI 84 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEE----echhhc-CCC-ceeEEEChhhCC----------CHHHHHHHHHHCCCEEEE
Confidence 3556777778888876 4567766 211000 010 01233333 332 578999999999999999
Q ss_pred EEecccCCCC--cCCCCCCCCCccccCCCC-----C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 478 EVVFTRTADG--ALQGIDDSSYYYAHRGEG-----I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 478 DvV~NH~~~~--~~~~~d~~~yY~~~~~~~-----~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
-+. .++..+ .+......+|+..+..+. + +...-+|+.||++++...+.++.-+.++|||||=+|...
T Consensus 85 ~i~-P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 85 SIW-PTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred Eec-CCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 554 334432 122122234444332111 1 123569999999999988877665669999999999543
No 76
>PLN02960 alpha-amylase
Probab=95.62 E-value=0.009 Score=73.34 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=50.7
Q ss_pred CCCCCCCCCceEEecCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcC
Q 047308 233 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMES 299 (878)
Q Consensus 233 ~~~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~ 299 (878)
++.|| ..||+|......|.|++|||.|..|+|+ .|+.|+..+..++-- -+.+.+.|+|++.++.
T Consensus 113 ~~~~~-e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g--~~~~~~~~~~~~~~~~ 177 (897)
T PLN02960 113 FASGF-ELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREG--YFGHDDFGYWFIILED 177 (897)
T ss_pred HhhHH-HHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhcc--cccccccceEEEEech
Confidence 56777 6899999986559999999999999999 899998766543311 1346788999999984
No 77
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.61 E-value=0.022 Score=63.50 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCccc-CCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSF-DEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~-~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
+-..+.+.++.+++.|| ++|||- .... .....||....-|..++ +| -+.++||+++|++|++|++
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~F----------Pdp~~mi~~Lh~~G~~~~~ 89 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERY----------PGLDELIEELKARGIRVLT 89 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhC----------CCHHHHHHHHHHCCCEEEE
Confidence 67788888999999875 678874 2210 00111221110123333 33 2589999999999999999
Q ss_pred EEecccCCCC--c-CCCCCCCCCccccCCCC------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 478 EVVFTRTADG--A-LQGIDDSSYYYAHRGEG------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 478 DvV~NH~~~~--~-~~~~d~~~yY~~~~~~~------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
-+. .++..+ . ++.....+|+..+..+. + +...-+|+.||++|+...+-++..+.++|||||=+|.-
T Consensus 90 ~i~-P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 90 YIN-PYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFG 165 (317)
T ss_pred Eec-CceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCC
Confidence 554 444332 1 11112234443332110 1 12356899999999999999999877899999999943
No 78
>PLN02784 alpha-amylase
Probab=95.58 E-value=0.058 Score=66.24 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=73.2
Q ss_pred eeecCCCCeEEEEEee--ecccEEEEEEEccccccCCCceEEEEEeeeecCCccc-------ccCCCCccCCCCCCCcee
Q 047308 106 LFRTDLGGLVSVSVGE--KNVNYAVTIDVSSLQTTRGGHKLVLIWGVYTSDSSSY-------MHLGSQCFTPDAKTGSIE 176 (878)
Q Consensus 106 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 176 (878)
.=+....+.|-|.|++ +.+|..|.|+..- .+.++|||||-+.+..-| .|.+|. -+.++.+
T Consensus 275 ~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~------~~~vvlHWgV~k~~~~eW~~Pp~~~~P~~sv-----~~~kA~e 343 (894)
T PLN02784 275 VKRVAVDNSVTVTVRKCPETAKNLVYLETDL------PGDVVVHWGVCKDGAKTWEIPPEPHPPETSL-----FKNKALQ 343 (894)
T ss_pred eeEEEecceEEEEEecCCCCCceEEEEEcCC------CCCEEEEeEeccCCCCcccCCCCCCCCCcce-----ecccccc
Confidence 3455566778888876 3466777776553 368999999999966666 566663 2568999
Q ss_pred eceeeCCCCeEEEEEeecCCCCCeEEEEeeccccCCCCCcchhhccccCccccccc
Q 047308 177 TPFTPTSFDTFALELGFEAKQTPFYLSFLLKSPLRDGSGDFEIRNHLSAKFCVPVG 232 (878)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (878)
|||...+.+..... .|+.+...--+-|+|+.. .|.++.. .|.+|.+|..
T Consensus 344 T~~~~~~~~~~~~~-~~~ld~~~~g~~FVLk~~-----~g~W~~~-~G~DF~Ipl~ 392 (894)
T PLN02784 344 TMLQQKDDGNGSSG-LFSLDGELEGLLFVLKLN-----EGTWLRC-NGNDFYVPLL 392 (894)
T ss_pred cccccccCCCcceE-EEecCCCeeEEEEEEECC-----CCchhhc-CCccEEEeCC
Confidence 99998543322221 366666666699999664 2555644 6899988844
No 79
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=94.82 E-value=0.15 Score=44.88 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.1
Q ss_pred eEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCCCccccceee
Q 047308 250 SLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDGYKSHLESVL 328 (878)
Q Consensus 250 ~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g~~~~~~~~~ 328 (878)
.|+|+..+ .|++|.|. -|++|.. .++| .+..++ |.+.++.......|+|.+++. ..
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-----~~pm---~~~~~~-~~~~~~L~~g~y~YkF~Vdg~-------------w~ 59 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-----KIPL---EKSGKG-FSATLRLPPGKYQYKFIVDGE-------------WR 59 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-----cccc---eECCCC-cEEEEEcCCCCEEEEEEECCE-------------EE
Confidence 47899888 79999998 6777753 1334 344555 999997544455778877643 46
Q ss_pred cCcccccc
Q 047308 329 LDPYAKII 336 (878)
Q Consensus 329 ~DPyA~~~ 336 (878)
.||-...+
T Consensus 60 ~d~~~~~~ 67 (79)
T cd02859 60 HSPDLPTE 67 (79)
T ss_pred eCCCCCcc
Confidence 68755544
No 80
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=94.69 E-value=0.14 Score=67.74 Aligned_cols=122 Identities=22% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHhcCCceeEecchhccccCCCCCCCCCCCCCCcccccc-------------------------CCCccHHHHHHHHH
Q 047308 698 FVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALAT-------------------------GFGIQITEFISFLS 752 (878)
Q Consensus 698 allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~-------------------------~~~~~l~~f~k~Li 752 (878)
++-||+||||=||+|.|+=--.--++ ++|+|+|+..... ....-=+..+.+++
T Consensus 1501 lLklt~PGVPD~YQG~E~wd~SLVDP--DNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~~~L 1578 (1693)
T PRK14507 1501 LLKLTLPGVPDTYQGTEFWDFSLVDP--DNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLWRLL 1578 (1693)
T ss_pred HHHHcCCCCCcccCCcccccccCcCC--CCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHHHHH
Confidence 47799999999999999765433333 7799998763210 00111235678899
Q ss_pred HHHhhccCCccccCCCCCC-CCccCCCCcEEEEEEecccccccccccCCCCCCeEEEEEe-----------------CCC
Q 047308 753 SFRLKRKENIDWHGSDHSP-PRWEDPDCKFLAMRLKVDKAESQLSSESSQTKGDLYIACN-----------------AAD 814 (878)
Q Consensus 753 ~LRk~~~~~i~~~g~~~~~-~~~~~~~~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N-----------------~s~ 814 (878)
+||+++ +++-..|...-. ..- ...++++||.|... +..++||.= ..+
T Consensus 1579 ~lRr~~-p~lF~~G~Y~PL~~~G-~~~~hv~AFaR~~~-------------~~~~vvvvpR~~~~l~~~~~~~~~~~~~W 1643 (1693)
T PRK14507 1579 ADRRAR-PALFRDGDYRPLKAEG-ARAEHVVAFARRRG-------------GDDLVVAVPRLVARLAGEDGELPWSAEAW 1643 (1693)
T ss_pred HHHHhC-hhhhccCCeeEEeccC-CccccEEEEEecCC-------------CcEEEEEEecchhhhhcccccCCcccCCC
Confidence 999998 222112211000 000 12468999999753 334444321 134
Q ss_pred CcEEEEcCCCCCCCeEEEEccCC
Q 047308 815 HSESVVLPPPPEGMTWHHLVDTA 837 (878)
Q Consensus 815 ~~~~~~Lp~~~~g~~W~~l~dt~ 837 (878)
....+.||.. .++.|+.++...
T Consensus 1644 ~dT~~~LP~~-~~~~w~d~ltg~ 1665 (1693)
T PRK14507 1644 AGTVVPLVLP-AGSRWVDVLTGR 1665 (1693)
T ss_pred CCCEEeCCCc-cCccceEeccCc
Confidence 4567888843 344799999754
No 81
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=94.65 E-value=0.31 Score=59.35 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCC-CCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGP-SRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt-~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
+-+.+...|+.||++|+|+|+|.-..+-++ ++-|+. - |=|. ++-+ ..+-+ +-+.-.+ +|++|++|.-=+-
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~g-d~~~~s-~-yfP~-~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp 402 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDG-DGLVKE-L-YFPN-RLLPMRADLF---NRVAWQL--RTRAGVNVYAWMP 402 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCC-Cccccc-c-ccCc-cccccccCCc---CHHHHHH--HHhhCCEEEEecc
Confidence 467888889999999999999976544332 221222 1 2233 2222 12222 2233333 8999999975442
Q ss_pred cccC----CCC---cCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 481 FTRT----ADG---ALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 481 ~NH~----~~~---~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
.=-+ ... .+..-.++.-. .-.+...|+-.+|+||+.|.+...-.++.+.|||.-||.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 403 VLSFDLDPTLPRVKRLDTGEGKAQI------HPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred ceeeccCCCcchhhhccccCCcccc------CCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 2111 110 01000000000 001234589999999999999999999889999999975
No 82
>PRK10426 alpha-glucosidase; Provisional
Probab=94.53 E-value=0.19 Score=61.25 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcC--CCeEEEccCcccC-CCCCCCCC-CCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 404 SGVTEKVHHLKDLG--VNAILLEPILSFD-EQKGPYFP-RHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 404 ~gi~~kLdyLk~LG--vt~I~L~PI~~~~-~~~~gY~~-~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
..+.+.++.+++.| +++|||.- +... ....|... .+ |.-++ +| -+.++||+++|++|++|++=
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~-~~~d~~~F----------Pdp~~mi~~L~~~G~k~v~~ 288 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWN-WKWDSERY----------PQLDSRIKQLNEEGIQFLGY 288 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEec-cccccccccccccccc-ceEChhhC----------CCHHHHHHHHHHCCCEEEEE
Confidence 56777888999988 58899841 1100 00001100 01 12222 22 36899999999999999987
Q ss_pred EecccCCCC-cCCCCCCCCCccccCCCC------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCcc
Q 047308 479 VVFTRTADG-ALQGIDDSSYYYAHRGEG------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASS 546 (878)
Q Consensus 479 vV~NH~~~~-~~~~~d~~~yY~~~~~~~------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~ 546 (878)
+-+--.... .+......+|+..+..+. + +...-+|+.||++|+...+.++..+.+.|||||=.|....
T Consensus 289 i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~ 364 (635)
T PRK10426 289 INPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEY 364 (635)
T ss_pred EcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCC
Confidence 655322111 111111234444322110 1 1224689999999999999988777799999999986553
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=94.53 E-value=0.093 Score=61.24 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCC--eEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGVN--AILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt--~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+-..+.+.++.+++.||- +|+|-.-+. . +|. -|..++ +| .++++||+.+|++|++|++-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~--~---~~~---~f~~d~~~F----------Pd~~~~~~~l~~~G~~~~~~ 102 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQ--D---GYG---DFTWDPERF----------PDPKQMIDELHDQGIKVVLW 102 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGS--B---TTB---TT-B-TTTT----------TTHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceecccccc--c---ccc---ccccccccc----------cchHHHHHhHhhCCcEEEEE
Confidence 456777788888887764 444422111 1 121 123333 22 37999999999999999998
Q ss_pred EecccCCCC-c----CCCCCCCCCccccCCC------CC-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 479 VVFTRTADG-A----LQGIDDSSYYYAHRGE------GI-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 479 vV~NH~~~~-~----~~~~d~~~yY~~~~~~------~~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
+.+. .... . +......+|+..++.+ .| +...-+|+.||+++++..+.++..+..+|||||-+|...
T Consensus 103 ~~P~-v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 103 VHPF-VSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp EESE-EETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred eecc-cCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 8773 3221 1 1111113444433211 01 124568999999999999999999977899999999644
No 84
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.41 E-value=0.072 Score=59.46 Aligned_cols=128 Identities=11% Similarity=0.149 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCC-CCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDE-QKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~-~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
+-+.+.+.++.+++.|| +.|+|=.=+-... ....|. + |..++ +|- +.++||+++|++|++|++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP----------dp~~mi~~L~~~G~k~~~ 88 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP----------DPAGMIADLAKKGVKTIV 88 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC----------CHHHHHHHHHHcCCcEEE
Confidence 45677888888888775 5677632110000 000011 1 33332 342 468999999999999999
Q ss_pred EEecccCCCC--cCCCCCCCCCccccCCCC-------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 478 EVVFTRTADG--ALQGIDDSSYYYAHRGEG-------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 478 DvV~NH~~~~--~~~~~d~~~yY~~~~~~~-------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
=+.+- +..+ .++.....+|+..+...+ | +...-+|+.||++|+...+.++..+ +.|||||=+|..
T Consensus 89 ~v~P~-v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~~ 163 (317)
T cd06598 89 ITEPF-VLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDLG 163 (317)
T ss_pred EEcCc-ccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecCC
Confidence 77532 2221 121112234432221110 1 1235689999999999999999875 899999999843
No 85
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=94.35 E-value=0.083 Score=58.99 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-+.+.+.++.+++.+| +.|+|=. .-. .+|. .|..++ +| -+.++||+++|++|++|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~----~~~-~~~~---~f~~d~~~F----------Pdp~~~i~~l~~~g~k~~~ 82 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDI----HYM-DSYR---LFTWDPYRF----------PEPKKLIDELHKRNVKLVT 82 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEECh----hhh-CCCC---ceeechhcC----------CCHHHHHHHHHHCCCEEEE
Confidence 356677778888888775 5677632 110 1222 123333 33 2578999999999999998
Q ss_pred EEecccCCCC----cCCCCCCCCCccccCCCC------C-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 478 EVVFTRTADG----ALQGIDDSSYYYAHRGEG------I-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 478 DvV~NH~~~~----~~~~~d~~~yY~~~~~~~------~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
=+.+- ...+ .+......+||.....+. | +...-+|+.||++++...+-++..+.+.|||||=+|...
T Consensus 83 ~~~P~-i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 83 IVDPG-IRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred Eeecc-ccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 65433 3221 111111124443322110 1 122458999999999999999998889999999999654
No 86
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=94.23 E-value=0.094 Score=59.10 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+-+.+.+.++.+++.|| +.|+|=.=+. .+| .-|..++ +|-.+ ..++||+++|++|++|++=
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~-----~~~---~~f~~d~~~FPdp--------~~~~mi~~L~~~G~k~~~~ 85 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYM-----DRR---RDFTLDPVRFPGL--------KMPEFVDELHANGQHYVPI 85 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccc-----cCc---cceecccccCCCc--------cHHHHHHHHHHCCCEEEEE
Confidence 45677888888888775 5677621110 112 1233333 33311 2299999999999999997
Q ss_pred EecccCCCCc-------CCCCCCCCCccccCCCC-------CCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 479 VVFTRTADGA-------LQGIDDSSYYYAHRGEG-------IETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 479 vV~NH~~~~~-------~~~~d~~~yY~~~~~~~-------~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+.+ |...+. +......+||..+..+. .+...-+|+.||++|+...+.++..+.++|||||=+|..
T Consensus 86 i~P-~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 164 (339)
T cd06602 86 LDP-AISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMN 164 (339)
T ss_pred EeC-ccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 643 333210 11001124443322110 112345799999999999999999998899999999965
Q ss_pred c
Q 047308 545 S 545 (878)
Q Consensus 545 ~ 545 (878)
.
T Consensus 165 E 165 (339)
T cd06602 165 E 165 (339)
T ss_pred C
Confidence 4
No 87
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=94.16 E-value=0.2 Score=56.46 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+-+.+.+.++.+++.|| ++|+|=+-+. .+|. .|.-++ +|- +.++||+++|++|++|++=
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~-----~~~~---~f~~d~~~fP----------dp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYM-----DGYR---VFTWDKERFP----------DPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhh-----CCCC---ceeeccccCC----------CHHHHHHHHHHCCCEEEEE
Confidence 45677788899998886 5677632221 1222 133333 332 5789999999999999976
Q ss_pred EecccCCCC----cCCCCCCCCCccccCCC------CC-CcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 479 VVFTRTADG----ALQGIDDSSYYYAHRGE------GI-ETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 479 vV~NH~~~~----~~~~~d~~~yY~~~~~~------~~-~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
+.+ |...+ .+......+||..+..+ .| +...-+|+.||+++++..+.++..+ +.|||||=+|...
T Consensus 84 ~~P-~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 84 IDP-GVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred EeC-ceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCCC
Confidence 544 22211 11111112444332211 01 1224479999999999999999887 8999999999543
No 88
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=94.12 E-value=0.11 Score=42.69 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=28.2
Q ss_pred CCCeEEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 802 TKGDLYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 802 ~~~~llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
.+..+++++|++++++++.||. .++++++..... ..++|+|+.+.||+
T Consensus 10 ~~~~y~F~~N~s~~~~~v~l~~-----~~~dll~g~~~~------------------~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 10 DGGRYLFLLNFSDEPQTVTLPE-----SYTDLLTGETVS------------------GGLTLPPYGVRVLK 57 (58)
T ss_dssp -ETTEEEEEE-SSS-EE----T-----T-EEEES-------------------------SEE-TTEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEcCC-----CceecccCccee------------------eEEEECCCEEEEEE
Confidence 3678999999999999999965 578888765321 13789999999986
No 89
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=93.47 E-value=0.22 Score=40.97 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=41.7
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCCeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEE
Q 047308 806 LYIACNAADHSESVVLPPPPEGMTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFE 872 (878)
Q Consensus 806 llVv~N~s~~~~~~~Lp~~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~ 872 (878)
|+|++|.++..++..+...-.+..|.+++.... ..++...+|-+.|.+||+|..||.
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~----------~~vtid~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSS----------ETVTIDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSS----------SEEEE-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCC----------CeEEECCCeEEEEEECCCEEEEeC
Confidence 456669999999999988777878888766542 233556788999999999999973
No 90
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.06 E-value=0.53 Score=50.74 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
-..+.++.||++|+|+|=|.--.+. + ..+.+.+- -....++.|+++|+.|+++||.||+|+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~------~-----~~~~~~~~---~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA------Y-----QEPNPGYN---YDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS------T-----STTSTTTS---BTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH------h-----cCCCCCcc---ccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4455699999999999998433211 1 11222210 011357899999999999999999988654
No 91
>PRK10658 putative alpha-glucosidase; Provisional
Probab=92.83 E-value=0.18 Score=61.77 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccCCCC--cCCCCCCCCCccccCCC------CC-CcccccCCCCHHHHHHHHHHHHHH
Q 047308 460 SMKEMVKKLHANGIEVLLEVVFTRTADG--ALQGIDDSSYYYAHRGE------GI-ETTNVLNCNYPTVQQMILNSLRHW 530 (878)
Q Consensus 460 elk~LV~~aH~~GI~VILDvV~NH~~~~--~~~~~d~~~yY~~~~~~------~~-~~~~dln~~~p~Vr~~iid~l~~W 530 (878)
+.++||+++|++|++|++=+.+ +...+ .++.....+|+..+..+ .| +...-+|+.||++|+...+-++..
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l 404 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGL 404 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHH
Confidence 5789999999999999987554 23322 11111123455433211 11 223568999999999999999997
Q ss_pred HHhcCccEEEEccCc
Q 047308 531 VTEFHIDGFCFINAS 545 (878)
Q Consensus 531 l~e~gVDGFRfD~a~ 545 (878)
+ +.|||||-.|...
T Consensus 405 ~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 405 L-DMGVDCFKTDFGE 418 (665)
T ss_pred H-hcCCcEEEecCCc
Confidence 7 8999999999543
No 92
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.82 E-value=1.6 Score=49.34 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCcc--CCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPT--KLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d--~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
+...|.+-||.+..+++|.++| +-.+...+.+....|=.+. +.|+ .+..=|.+|+|+||+-|.++||.||-.+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~---HltDd~~~rle~~~~P~Lt~~ga~~--~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHW---HITDSQSFPLESPSYPELSKKGAYS--PSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEE---eEEcCCCceEeeCCCchhhhccCcC--CCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 4667777799999999999987 2222211111111111110 0111 0112245999999999999999999888
Q ss_pred -ecccCCCC--cCCC--CCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 480 -VFTRTADG--ALQG--IDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 480 -V~NH~~~~--~~~~--~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
++.|+..- +... ......+. ..........||..+|++.+++.+.+.-.++-|.-.
T Consensus 91 D~PGH~~a~~~~~p~l~~~~~~~~~--~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~ 151 (348)
T cd06562 91 DTPGHTGSWGQGYPELLTGCYAVWR--KYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK 151 (348)
T ss_pred cCchhhHHHHHhChhhhCCCCcccc--ccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCc
Confidence 58888651 1111 11111100 000111235689999999999999999999766533
No 93
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=91.63 E-value=0.58 Score=50.37 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
.+++++.|+.+|++|++|++=+-.+|.+.. + ....+++-++.+.+++.-++++||+|
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------~--------------~~~~~~~~~~~fa~~l~~~v~~yglD 106 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAG---------F--------------ANNLSDAAAKAYAKAIVDTVDKYGLD 106 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCC---------c--------------cccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 488999999999999999998877665321 0 01234566777888888888999999
Q ss_pred EEEEc
Q 047308 538 GFCFI 542 (878)
Q Consensus 538 GFRfD 542 (878)
|+-+|
T Consensus 107 GiDiD 111 (255)
T cd06542 107 GVDFD 111 (255)
T ss_pred ceEEe
Confidence 99998
No 94
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.16 E-value=0.36 Score=54.68 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
++....+.|.-.+++|++.|+..= + .++ .++..-.++|++|++.||+.||.||+||-+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-~-ipe--------------------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-H-IPE--------------------DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-------------------------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-C-cCC--------------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 677888888888999999998641 1 111 011124689999999999999999999976
Q ss_pred c
Q 047308 482 T 482 (878)
Q Consensus 482 N 482 (878)
.
T Consensus 70 ~ 70 (357)
T PF05913_consen 70 K 70 (357)
T ss_dssp C
T ss_pred H
Confidence 5
No 95
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.10 E-value=0.44 Score=52.56 Aligned_cols=127 Identities=10% Similarity=0.120 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCC-CCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPY-FPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY-~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
+-..+.+-++.+++.|| ++|+|=.=+........| +...-|..++ +| -+.++||+++|++|++|++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~F----------Pdp~~mi~~Lh~~G~k~v~ 92 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLF----------PDPEKLLQDLHDRGLKVTL 92 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcC----------CCHHHHHHHHHHCCCEEEE
Confidence 56677777888887665 566661111000000001 0011233333 33 3589999999999999999
Q ss_pred EEecccCCCCcCCCCCCCCCc--cccC-C-CCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 478 EVVFTRTADGALQGIDDSSYY--YAHR-G-EGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 478 DvV~NH~~~~~~~~~d~~~yY--~~~~-~-~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
-+.+.......- ..|- .... . ...+....+|+.||+.++...+.+..-+.++|||||=.|.
T Consensus 93 ~v~P~~~~~~~~-----~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~ 157 (292)
T cd06595 93 NLHPADGIRAHE-----DQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDW 157 (292)
T ss_pred EeCCCcccCCCc-----HHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 886643111000 0011 0000 0 0011113679999999997777776666699999999983
No 96
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=90.56 E-value=0.4 Score=54.06 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-..+.+.++.+++.|| +.|+|=.=+ . .+|. .|..++ +|- +.++||+++|++|++|++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~---~~~~---~f~~d~~~FP----------dp~~mi~~L~~~G~k~~~ 82 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEH--T---DGKR---YFTWDKKKFP----------DPEKMQEKLASKGRKLVT 82 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHH--h---CCCC---ceEeCcccCC----------CHHHHHHHHHHCCCEEEE
Confidence 356677888888888765 566663211 0 1122 244444 332 579999999999999999
Q ss_pred EEecccCCC-C--cCCCCCCCCCccccCCCC------C-CcccccCCCCHHHHHHHHHHHHHHHH--hcCccEEEEccC
Q 047308 478 EVVFTRTAD-G--ALQGIDDSSYYYAHRGEG------I-ETTNVLNCNYPTVQQMILNSLRHWVT--EFHIDGFCFINA 544 (878)
Q Consensus 478 DvV~NH~~~-~--~~~~~d~~~yY~~~~~~~------~-~~~~dln~~~p~Vr~~iid~l~~Wl~--e~gVDGFRfD~a 544 (878)
-+.+--... + .+......+|+..+..+. | +...-+|+.||++++...+-++..+. ..++|||=+|..
T Consensus 83 ~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 83 IVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred EecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 876432211 1 111111234443332110 1 12356899999999999999998885 468999998843
No 97
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=90.35 E-value=0.83 Score=56.16 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCC--EEEEEEecccCCC--Cc------C----CCCCCCCCccccCCCCCCcccccCCCCH--HHHH
Q 047308 458 INSMKEMVKKLHANGI--EVLLEVVFTRTAD--GA------L----QGIDDSSYYYAHRGEGIETTNVLNCNYP--TVQQ 521 (878)
Q Consensus 458 i~elk~LV~~aH~~GI--~VILDvV~NH~~~--~~------~----~~~d~~~yY~~~~~~~~~~~~dln~~~p--~Vr~ 521 (878)
-++++++-+.|+++|| ++|-|+-+-=... +. | .---+|++|...+. .|+ .+-+|+..- .--+
T Consensus 354 ~~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~GQ-~WG-~P~y~w~~l~~~gy~ 431 (695)
T PRK11052 354 DSQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQ-NWG-LPPMDPHVLQARAYQ 431 (695)
T ss_pred HHHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcccc-cCC-CcCcCHHHHHhcCcH
Confidence 3677888889999999 6799996532222 21 1 11124677765441 122 133433210 0012
Q ss_pred HHHHHHHHHHHhcCccEEEEccCcccccccc---------cccC--CchhHHHHHHcCccccccEEEeecCC
Q 047308 522 MILNSLRHWVTEFHIDGFCFINASSLLRGFH---------GEYL--SRPPLIEAIAFDPLLSKAKLIADYWD 582 (878)
Q Consensus 522 ~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~---------~~~~--~~~~~~~~ia~d~~~~~~~ligE~w~ 582 (878)
..++-++.-++ +.|++|+|.+-.+.+=++ +.+. ....++..++.....+++.+|||.-.
T Consensus 432 ww~~rlr~~~~--~~g~lRIDH~~Gl~rlW~IP~g~~a~~G~yv~~P~~~ll~~lales~~~~~~vIgEDLG 501 (695)
T PRK11052 432 PFIDLLRANMQ--HCGALRIDHVMSLLRLWWIPYGETADQGAYVHYPVDDLLAILALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHH--hCCEEEecchhhhheeeecCCCCCCCCCeeEeCCHHHHHHHHHHHHhcCCCCEEEeeCC
Confidence 34444554443 688999997665433221 2222 11245555554555567889999654
No 98
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.08 E-value=3.5 Score=46.87 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEcc---------CcccCC--CCCCCCCCCCCCccCCCCCC---CCCcchHHHHHHHHHH
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEP---------ILSFDE--QKGPYFPRHFFSPTKLHGPS---RGSISAINSMKEMVKK 467 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~P---------I~~~~~--~~~gY~~~~yfa~d~~yGt~---~~~~~~i~elk~LV~~ 467 (878)
+...|.+-||.+..+++|.++|=- +-.++. ..+.|.+.+... .+.++.. ....=|.+|+|++|+-
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~-~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIG-LPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCccccc-ccccccCCCccCceECHHHHHHHHHH
Confidence 466677779999999999999821 111111 112222221111 1111111 1223467999999999
Q ss_pred HHHCCCEEEEEE-ecccCCCC--cCCCCC--CCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 468 LHANGIEVLLEV-VFTRTADG--ALQGID--DSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 468 aH~~GI~VILDv-V~NH~~~~--~~~~~d--~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
|.++||+||-.+ ++.|+..- ++..+. ........ ........||..+|++.+++.+.+.-.++-|.
T Consensus 95 A~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~--~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 95 AAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVS--VQGVVSNVLCPGKPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred HHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCcccc--ccCcCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 999999999888 58887641 111110 00000000 01112256899999999999999999986554
No 99
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.84 E-value=1.4 Score=50.26 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCc-cc-CCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPIL-SF-DEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~-~~-~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
..+.+.|.-+|++|+|+|-|..+. .. ....+-| || ..|.++|+.|+++||+|||-+.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~y---dF-----------------~~lD~~l~~a~~~Gi~viL~~~- 68 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQY---DF-----------------SWLDRVLDLAAKHGIKVILGTP- 68 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----------------------HHHHHHHHHHHCTT-EEEEEEC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCCCee---ec-----------------HHHHHHHHHHHhccCeEEEEec-
Confidence 345667999999999999997652 11 1111212 22 7799999999999999999775
Q ss_pred ccCCCCcCCCCCCCCCccccCC---CCCCcccccCCCCHHHHHHHHHHHHHHHHhcC----ccEEEEccC
Q 047308 482 TRTADGALQGIDDSSYYYAHRG---EGIETTNVLNCNYPTVQQMILNSLRHWVTEFH----IDGFCFINA 544 (878)
Q Consensus 482 NH~~~~~~~~~d~~~yY~~~~~---~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g----VDGFRfD~a 544 (878)
.+....++.... +..-..+.. ...+.....++.+|..|+++...++..++.|+ |-|+-+|+=
T Consensus 69 ~~~~P~Wl~~~~-Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 69 TAAPPAWLYDKY-PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp TTTS-HHHHCCS-GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred ccccccchhhhc-ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 333332221110 000000000 01222344567889999888887766666554 778988763
No 100
>PLN02950 4-alpha-glucanotransferase
Probab=89.38 E-value=6 Score=50.30 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCC-----CCCCCCCCCCCccCCCCCC
Q 047308 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQ-----KGPYFPRHFFSPTKLHGPS 451 (878)
Q Consensus 399 ~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~-----~~gY~~~~yfa~d~~yGt~ 451 (878)
+.|+|..+.+-+|.+++.|.+.|+|+|+.+.... ..+|.+.+=|+.+|.|=..
T Consensus 278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l 335 (909)
T PLN02950 278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRV 335 (909)
T ss_pred CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCH
Confidence 5799999999999999999999999999875422 1278888889999888753
No 101
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.07 E-value=2.3 Score=47.64 Aligned_cols=128 Identities=9% Similarity=0.136 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCCCeEEE-------ccCcccCC--CCCCCCCCCCCCccCCC-CCCCCCcchHHHHHHHHHHHHHC
Q 047308 402 TFSGVTEKVHHLKDLGVNAILL-------EPILSFDE--QKGPYFPRHFFSPTKLH-GPSRGSISAINSMKEMVKKLHAN 471 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L-------~PI~~~~~--~~~gY~~~~yfa~d~~y-Gt~~~~~~~i~elk~LV~~aH~~ 471 (878)
+...|.+-|+.+..+++|.++| .++-..+. ..+.|.......+.... +......=|.+|+|+||+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 5677777899999999999998 11111100 00001110000000000 01112233679999999999999
Q ss_pred CCEEEEEE-ecccCCCC--cCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 472 GIEVLLEV-VFTRTADG--ALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 472 GI~VILDv-V~NH~~~~--~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
||.||-.+ ++.|+..- +...+..... ........||..+|++.+++.+.+.-.++-|.
T Consensus 95 gI~vIPEID~PGH~~a~~~~~pel~~~~~------~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKAMPELGLKNP------FSKYDKDTLDISNPEAVKFVKALFDEYLDGFN 155 (326)
T ss_pred CCeEeccCCCcHHHHHHHHhhHHhcCCCc------ccCCCcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999877 58887541 1110000000 11223367899999999999999999986665
No 102
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=88.71 E-value=1.4 Score=52.15 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccCCC--Cc------C----C------CCCCCCCccccCCCCCCcccccCCCCH--H
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFTRTAD--GA------L----Q------GIDDSSYYYAHRGEGIETTNVLNCNYP--T 518 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~NH~~~--~~------~----~------~~d~~~yY~~~~~~~~~~~~dln~~~p--~ 518 (878)
++++++.+.||++||++|.|+-+-=... +. | . .-.+|++|...+. .|+ .|-+|+..- .
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ-~WG-~P~y~w~~l~~~ 275 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSETGQ-LWG-NPVYNWDALRKD 275 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcccC-cCC-CCCcCHHHHHhc
Confidence 6778888999999999999997632221 20 1 0 0113556644331 122 134443210 0
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEccCccccccc----------ccccCCch--hHHHHHHcCccccccEEEeecCC
Q 047308 519 VQQMILNSLRHWVTEFHIDGFCFINASSLLRGF----------HGEYLSRP--PLIEAIAFDPLLSKAKLIADYWD 582 (878)
Q Consensus 519 Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~----------~~~~~~~~--~~~~~ia~d~~~~~~~ligE~w~ 582 (878)
--+..++-+++=++ ..|.+|+|.+-.+.+=+ .+.|...+ .+...++.. .+++.+|||.-.
T Consensus 276 gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p~~~l~~~l~~e--~~~~~vigEDLG 347 (497)
T PRK14508 276 GYRWWIERLRRSFK--LYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGPGKDLFEAVKEE--LGDLPIIAEDLG 347 (497)
T ss_pred CcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeecCCHHHHHHHHHHH--hCCCCEEEeECC
Confidence 11234444444443 78899999765433211 12233222 344444332 246788999654
No 103
>PLN03244 alpha-amylase; Provisional
Probab=88.67 E-value=0.41 Score=58.44 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCCCCCCCCceEEecCCeEEEEEEcCCCCeEEEE-EecCCCCCCCceeeccCccccCCCCEEEEEEcC
Q 047308 233 LNAGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLC-LYDDTTADRPALELDLDPYINRSGDIWHASMES 299 (878)
Q Consensus 233 ~~~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~-l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~ 299 (878)
++.|+ ..||.+....+.+.|.-|||.|..++|+ .|+.|...+...+.- .+.+.+.|+|+|.++.
T Consensus 116 ~~~~~-e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~--~~~~~~~g~~~~~~~~ 180 (872)
T PLN03244 116 FASGF-EILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG--HFGHDDYGYWFIILED 180 (872)
T ss_pred hhhhh-hhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc--cccccccceEEEEech
Confidence 56777 6899999988669999999999999998 898887654432210 1346788999999985
No 104
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=88.59 E-value=2.2 Score=46.31 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-+.+.+.++.+++.|| ++|+|-.=+.. +|.... +..++ +|. +.++||+.+|++|++|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-----~~~~f~-~~~d~~~Fp----------dp~~~i~~l~~~g~~~~~ 84 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTD-----GYGDFT-FDWDAGKFP----------NPKSMIDELHDNGVKLVL 84 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccccc-----CCceee-eecChhhCC----------CHHHHHHHHHHCCCEEEE
Confidence 567788888999988665 57777432221 121110 13332 343 589999999999999999
Q ss_pred EEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 478 EVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 478 DvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
-+.+. +|+...+.++..+.+.|||||=+|..
T Consensus 85 ~~~P~------------------------------------v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 85 WIDPY------------------------------------IREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred EeChh------------------------------------HHHHHHHHHHHhhccCCCCEEeccCC
Confidence 66542 26666776766656899999999954
No 105
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=88.59 E-value=4.7 Score=45.31 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCcc--CCC---CCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPT--KLH---GPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d--~~y---Gt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
+...|.+.||.+...++|.++|=- .+...+......|=.+. +.+ +......=|.+|+|+||+-|.++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHL---tD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHL---TDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEe---ecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 567788889999999999999822 22211111111110000 000 0011122356999999999999999999
Q ss_pred EEE-ecccCCCC--cCCCCCCC----CCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhc
Q 047308 477 LEV-VFTRTADG--ALQGIDDS----SYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEF 534 (878)
Q Consensus 477 LDv-V~NH~~~~--~~~~~d~~----~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~ 534 (878)
-.+ ++.|+..- ++..+... ..|.. .. .....||..+|++.+++.+.+.-.++-|
T Consensus 93 PEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~---~~-~~~~~l~~~~~~t~~fl~~v~~E~~~~f 153 (329)
T cd06568 93 PEIDMPGHTNAALAAYPELNCDGKAKPLYTG---IE-VGFSSLDVDKPTTYEFVDDVFRELAALT 153 (329)
T ss_pred EecCCcHHHHHHHHhChhhccCCCCCccccc---cC-CCCcccCCCCHHHHHHHHHHHHHHHHhC
Confidence 888 47887541 11111111 11110 00 1125689999999999999998888544
No 106
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=88.57 E-value=2.9 Score=46.39 Aligned_cols=128 Identities=14% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCC----CCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKL----HGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~----yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
=+...|.+-||.+..+++|.++| +-.+...+.+....|=.+... .+......=|.+|+|+||+-|.++||.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhl---Hl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHW---HLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEE---eeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 35677888899999999999987 222221111111111000000 00001122356999999999999999999
Q ss_pred EEE-ecccCCCC--cCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhc
Q 047308 477 LEV-VFTRTADG--ALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEF 534 (878)
Q Consensus 477 LDv-V~NH~~~~--~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~ 534 (878)
-.+ ++.|+..- +...+....+- ..........||..+|++.+++.+.+.-+++-|
T Consensus 90 PEiD~PGH~~a~~~~~p~l~~~~~~---~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 90 PEIDMPGHSTAFVKSFPKLLTECYA---GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred EeccchHHHHHHHHhCHHhccCccc---cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 888 58888641 11111100000 000001125689999999999999999999544
No 107
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.55 E-value=1.9 Score=43.63 Aligned_cols=71 Identities=11% Similarity=0.251 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
-+.-.+.+.++|++|+++|.|+ ...... .-+.|..++.. .+-.+ ..+-+..+.++|.+.||+|++-+-++
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq--~~~~~~-~~~yps~~~~~--~~~~~-----~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQ--WTGYGG-FAFYPSKLSPG--GFYMP-----PVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE--EeecCC-cccCCccccCc--cccCC-----cccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 4566778999999999999986 111111 11334444211 12211 34789999999999999999998887
Q ss_pred c
Q 047308 483 R 483 (878)
Q Consensus 483 H 483 (878)
.
T Consensus 89 ~ 89 (166)
T PF14488_consen 89 P 89 (166)
T ss_pred c
Confidence 4
No 108
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.22 E-value=0.92 Score=51.60 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 462 KEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 462 k~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
++||..||++|++|++..-+. .-...++..|+-+++++.-+++++|.||+-+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~----------------------------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdI 118 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP----------------------------LEQISNPTYRTQWIQQKVELAKSQFMDGINI 118 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC----------------------------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 488999999999999751100 0124578899999999999999999999999
Q ss_pred c
Q 047308 542 I 542 (878)
Q Consensus 542 D 542 (878)
|
T Consensus 119 D 119 (358)
T cd02875 119 D 119 (358)
T ss_pred c
Confidence 8
No 109
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.03 E-value=0.87 Score=56.65 Aligned_cols=85 Identities=14% Similarity=0.266 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccCCCC-cCCCCCCCCCccccCC------CCCC-cccccCCCCHHHHHHHHHHH-HHH
Q 047308 460 SMKEMVKKLHANGIEVLLEVVFTRTADG-ALQGIDDSSYYYAHRG------EGIE-TTNVLNCNYPTVQQMILNSL-RHW 530 (878)
Q Consensus 460 elk~LV~~aH~~GI~VILDvV~NH~~~~-~~~~~d~~~yY~~~~~------~~~~-~~~dln~~~p~Vr~~iid~l-~~W 530 (878)
+.|+||+.+|++||++|.=+.+.=..+. .++.....+|+..++. ..|+ .+.-+||.||++|+...+.. ..+
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l 401 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNL 401 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHH
Confidence 4679999999999999987766433332 1111122345544432 1232 34568999999999999544 455
Q ss_pred HHhcCccEEEEccCc
Q 047308 531 VTEFHIDGFCFINAS 545 (878)
Q Consensus 531 l~e~gVDGFRfD~a~ 545 (878)
+ ++|||||=.|...
T Consensus 402 ~-d~Gv~g~W~D~nE 415 (772)
T COG1501 402 L-DLGVDGFWNDMNE 415 (772)
T ss_pred H-hcCccEEEccCCC
Confidence 5 9999999998543
No 110
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=86.99 E-value=2.2 Score=39.64 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCceEEecCCeEEEEEEcCC--CCeEEEEEecCCCCCCCceeeccCccccC-CCCEEEEEEcCCCCCceeEEEECC
Q 047308 240 PMGLSFSTDGSLNFAIFSRH--AQGVVLCLYDDTTADRPALELDLDPYINR-SGDIWHASMESTWNFVSYGYRFKG 312 (878)
Q Consensus 240 ~lGa~~~~~g~v~F~vwaP~--A~~V~l~l~~~~~~~~~~~~~~l~~~~~~-~~gvW~v~i~~~~~g~~Y~y~i~~ 312 (878)
|+|| + .++|+|+++. +++|.|++.++..... ...++|.+.... ..+.|++.|+.......|.|++..
T Consensus 12 p~ga----~-~v~irlr~~~~~v~~v~l~~~~~~~~~~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~~ 81 (116)
T cd02857 12 PYGA----D-TLHIRLRTKKGDVAKVYLRYGDPYDKGE-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELVD 81 (116)
T ss_pred EcCC----C-EEEEEEEecCCCccEEEEEEECCCCCCC-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEEc
Confidence 6777 2 5899999875 5777877665421111 124555432211 225799999865555678888854
No 111
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=86.79 E-value=0.51 Score=52.75 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
-..+.|..+|++|+|+|..-=.+...+..-| ..|| . ...+|.+|++.|+++||.|||-.=+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df-------~-------g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDF-------T-------GNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B----------S-------GGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCC--cccc-------c-------chhhHHHHHHHHHHcCcEEEecccc
Confidence 3457789999999999997333332221111 1122 1 1379999999999999999998644
No 112
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.75 E-value=5 Score=44.74 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE-e
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV-V 480 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv-V 480 (878)
+...|.+.||.+..+++|.++| +-.+...+.+....|=.+. ..|+. ...=|.+|+|+||+-|.++||.||-.+ +
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~---HltDd~~~rle~~~~P~lt-~~g~~-~~~yT~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHW---HLTDDQGFRIESKKYPKLQ-QKASD-GLYYTQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEE---EEecCCCceeecCCCcccc-ccCCC-CCccCHHHHHHHHHHHHHcCCEEEEeecC
Confidence 4667777799999999998887 2222221111111111110 00110 112256999999999999999999888 5
Q ss_pred cccCCCC--cCCCCC--CCCCccccCCCCCCc-ccccCCCCHHHHHHHHHHHHHHHHhc
Q 047308 481 FTRTADG--ALQGID--DSSYYYAHRGEGIET-TNVLNCNYPTVQQMILNSLRHWVTEF 534 (878)
Q Consensus 481 ~NH~~~~--~~~~~d--~~~yY~~~~~~~~~~-~~dln~~~p~Vr~~iid~l~~Wl~e~ 534 (878)
+.|+..- ++..+. ...+... ..++. .+.||..+|++.+++.+.+.-.+.-|
T Consensus 91 PGH~~a~~~~ypel~~~~~~~~~~---~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 91 PGHASAIAVAYPELASGPGPYVIE---RGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred ccchHHHHHhCHHhccCCCccccc---cccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 8888641 111111 0011100 11111 24689999999999999999888545
No 113
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=86.62 E-value=2.3 Score=47.32 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
.+++++-|+.||++|++||+=+ +. .. ......++.-|+.+++++.-+++++|+|
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSi-----GG--~~-------------------~~~~~~~~~~~~~fa~sl~~~~~~~g~D 112 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISI-----GG--AN-------------------GHVDLNHTAQEDNFVDSIVAIIKEYGFD 112 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEE-----eC--CC-------------------CccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3789999999999999999865 10 00 0012345677899999999999999999
Q ss_pred EEEEc
Q 047308 538 GFCFI 542 (878)
Q Consensus 538 GFRfD 542 (878)
|+-||
T Consensus 113 GiDiD 117 (312)
T cd02871 113 GLDID 117 (312)
T ss_pred eEEEe
Confidence 99998
No 114
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=0.78 Score=50.56 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
...-++-|+...+.|++-|...=... .+.. ..-..-|++|++.||+.||+||.||-+.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~~-~~~~---------------------~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLIP-EEDA---------------------ELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecccC-CchH---------------------HHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 34445556777789999987422111 1100 0123679999999999999999999774
No 115
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=86.41 E-value=1.9 Score=48.48 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCC--CCCCC-CCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKL--HGPSR-GSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~--yGt~~-~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+..-|.+-|+.+..+++|.++| +-.+...+.+....|=.+... +.... +..=|.+|+|+||+-|+++||+||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhl---hl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHL---HLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE---EEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEE---EEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 5677888899999999999998 222221111111111000000 00000 01235699999999999999999988
Q ss_pred E-ecccCCCC--c---CCCC---CCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 479 V-VFTRTADG--A---LQGI---DDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 479 v-V~NH~~~~--~---~~~~---d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+ ++.|+..- + +... ....++.... .......||..+|++.+++.+.+.-.++-|.-.-|.+
T Consensus 93 id~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 93 IDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTC--WYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp EEESSS-HHHHHHHHHHCCCHTTCSSSCEEEET--TSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred ccCchHHHHHHHhCchhhccccccccccccccc--cCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 8 58898641 1 1110 0111221111 0111246899999999999999999997777444444
No 116
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=86.35 E-value=1.8 Score=48.61 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+-..+.+.++.+++.+| ++|+|=.=+ . .+| ..|..++ +|- +.++||+++|++|++|++-
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy----~-~~~---~~Ft~d~~~FP----------dp~~mv~~L~~~G~klv~~ 83 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDF----Q-DNY---RTFTTNGGGFP----------NPKEMFDNLHNKGLKCSTN 83 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCch----h-cCC---CceeecCCCCC----------CHHHHHHHHHHCCCeEEEE
Confidence 45667777777777664 667763211 0 112 2244443 342 4689999999999999887
Q ss_pred EecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 479 VVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 479 vV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+.+- ...+ ..+. +.+.-.|+.||++|++-.+..+.+. +.|||||=.|..
T Consensus 84 i~P~-i~~g-------------~~~~--~~~~~pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 84 ITPV-ISYG-------------GGLG--SPGLYPDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred ecCc-eecC-------------ccCC--CCceeeCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 6542 1100 0000 1124568899999999888888877 789999999853
No 117
>PLN02635 disproportionating enzyme
Probab=83.86 E-value=2.3 Score=50.79 Aligned_cols=118 Identities=10% Similarity=0.102 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEec--ccCCCCc------CC-C---------CCCCCCccccCCCCCCcccccCCCCH--H
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVF--TRTADGA------LQ-G---------IDDSSYYYAHRGEGIETTNVLNCNYP--T 518 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~--NH~~~~~------~~-~---------~d~~~yY~~~~~~~~~~~~dln~~~p--~ 518 (878)
++++++-+.||++||++|-|+-+ +|-+.+. |. + -.+|+||...+. .|+. |-+|+..- .
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ-~WG~-P~y~w~~l~~~ 301 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQ-LWGS-PLYDWKAMAKD 301 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccc-cCCC-cCcCHHHHHhc
Confidence 56788889999999999999974 3333221 11 1 124666655431 1221 33433210 0
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEccCccccccc----------ccccCCch--hHHHHHHcCccccccEEEeecCC
Q 047308 519 VQQMILNSLRHWVTEFHIDGFCFINASSLLRGF----------HGEYLSRP--PLIEAIAFDPLLSKAKLIADYWD 582 (878)
Q Consensus 519 Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~----------~~~~~~~~--~~~~~ia~d~~~~~~~ligE~w~ 582 (878)
--+..++-+++=++ ..|++|+|.+-.+.+=+ .+.|...+ .++.++.. ..+++.+|||.-.
T Consensus 302 gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~--~~~~~~vIaEDLG 373 (538)
T PLN02635 302 GYSWWAGRMRRALE--LYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKK--AVGKIDIIAEDLG 373 (538)
T ss_pred CcHHHHHHHHHHHH--hCCeEEecchhhhheeeeccCCCCCCCCCeeeeCCHHHHHHHHHH--HcCCCCEEEeeCC
Confidence 11234444444443 68899999655432211 12222221 34444432 2346789999654
No 118
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=83.44 E-value=2.8 Score=53.14 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCC--CeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 402 TFSGVTEKVHHLKDLGV--NAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGv--t~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
+-+.+.+-++.+++.|| ++|||= .+- ..+|.. |..++ +|- +.++||+++|++|+++|+=
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlD----idY-m~g~~~---FTwD~~rFP----------dP~~mv~~Lh~~G~kvv~i 260 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMD----IDY-MDGFRC---FTFDKERFP----------DPKGLADDLHSIGFKAIWM 260 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEe----hhh-hcCCCc---eeECcccCC----------CHHHHHHHHHHCCCEEEEE
Confidence 34567777888887765 567762 111 112322 34443 443 5789999999999999875
Q ss_pred EecccCCCC-cCCCC---CCCCCccccCCC------CCC-cccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 479 VVFTRTADG-ALQGI---DDSSYYYAHRGE------GIE-TTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 479 vV~NH~~~~-~~~~~---d~~~yY~~~~~~------~~~-~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
+.+ +...+ .+... -..++|..+..+ .|+ ...-.||.||++|++..+.++.++ +.|||||=+|.
T Consensus 261 idP-gI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dm 334 (978)
T PLN02763 261 LDP-GIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDM 334 (978)
T ss_pred EcC-CCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccC
Confidence 433 22211 11000 012233222111 111 123468999999999999999888 79999999995
No 119
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=83.07 E-value=3.5 Score=44.34 Aligned_cols=61 Identities=15% Similarity=0.433 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccE
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDG 538 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDG 538 (878)
.++..+++++|++|++|++=|- ++... . + .. -..++..|+.+++++.-++++|++||
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sig-g~~~~---------~-~-----------~~-~~~~~~~r~~fi~~lv~~~~~~~~DG 102 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLA-GGSPP---------E-F-----------TA-ALNDPAKRKALVDKIINYVVSYNLDG 102 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEc-CCCCC---------c-c-----------hh-hhcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 5788999999999999998542 22110 0 0 00 23568889999999999999999999
Q ss_pred EEEc
Q 047308 539 FCFI 542 (878)
Q Consensus 539 FRfD 542 (878)
+-+|
T Consensus 103 IdiD 106 (253)
T cd06545 103 IDVD 106 (253)
T ss_pred eeEE
Confidence 9998
No 120
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=82.47 E-value=3.1 Score=50.99 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=54.0
Q ss_pred CCCCCCCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCC--CceeeccCccccCCCCEEEEEEcCCCCC-------ce
Q 047308 235 AGVPSPMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADR--PALELDLDPYINRSGDIWHASMESTWNF-------VS 305 (878)
Q Consensus 235 ~g~~~~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~--~~~~~~l~~~~~~~~gvW~v~i~~~~~g-------~~ 305 (878)
..+++++|+ .|++|+|.|+.+++..|+..+... ...++.+. +-.-|+|...+.+.... ..
T Consensus 61 ~~~~~~~G~--------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~---k~l~dpya~~l~g~~~~~~~~~~~y~ 129 (697)
T COG1523 61 YPYDGELGA--------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPN---KLLLDPYAKALDGDLKWGTPALFGYY 129 (697)
T ss_pred cccCCcccc--------EEEEEcCCCceeeEEEEecCCCcCCccCeeeccc---cccccceeEEeccccccCcccccccc
Confidence 445566765 799999999999999998554322 23445443 45668999999876532 23
Q ss_pred eEEEECCCcCCCCCCccccceeecCccccccc
Q 047308 306 YGYRFKGSFSQGDGYKSHLESVLLDPYAKIIV 337 (878)
Q Consensus 306 Y~y~i~~~~~~~~g~~~~~~~~~~DPyA~~~~ 337 (878)
|.|.+... + +....+|||+|++.
T Consensus 130 ~~~~~~~~-----~----~~~~~~~~~~Ksvv 152 (697)
T COG1523 130 YGYQITNL-----S----PDRDSADPYPKSVV 152 (697)
T ss_pred cccccccc-----C----ccccccccCCceEE
Confidence 33444422 1 12456788888886
No 121
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=81.92 E-value=1.9 Score=51.17 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=46.7
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCC
Q 047308 398 DIAGTFS-GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPS 451 (878)
Q Consensus 398 ~~~Gt~~-gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~ 451 (878)
.+.|||. ++.+-++.+++.|.+.|+|+|+.+......+|.+.+=|+.+|.|=..
T Consensus 20 ~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l 74 (497)
T PRK14508 20 YGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDL 74 (497)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCh
Confidence 3579995 99999999999999999999999876555689999989999888753
No 122
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=81.35 E-value=1.4 Score=53.19 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHhcCCceeEecchhccccCCCCCCCCCCCCCCcccccc------CCCcc---------HHHHHHHHHHHHhhccCCc
Q 047308 698 FVLYVSLGVPILNMGDECGQSSWGSPSYADRKPFDWNALAT------GFGIQ---------ITEFISFLSSFRLKRKENI 762 (878)
Q Consensus 698 allltspGiP~Iy~GdE~G~~~~g~n~y~~r~~~~W~~~~~------~~~~~---------l~~f~k~Li~LRk~~~~~i 762 (878)
.+-||.||||=||+|.|.-...--++ ++|+|.|...... ....+ -...+.+++++|+.+. +
T Consensus 713 LlkltaPGVPD~YQGtE~wd~SLVDP--DNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~-e- 788 (889)
T COG3280 713 LLKLTAPGVPDIYQGTELWDFSLVDP--DNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP-E- 788 (889)
T ss_pred HHHHcCCCCCccccchhhhhccccCC--CCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch-H-
Confidence 46789999999999999765443333 6677776654220 00000 2235677889999871 1
Q ss_pred cccCCCCCCCC-ccCCCCcEEEEEEecc
Q 047308 763 DWHGSDHSPPR-WEDPDCKFLAMRLKVD 789 (878)
Q Consensus 763 ~~~g~~~~~~~-~~~~~~~vlaf~R~~~ 789 (878)
.|.+.+.-... .-...++++||.|...
T Consensus 789 lF~~GdY~Pl~~~G~~a~hviAFaR~~~ 816 (889)
T COG3280 789 LFAGGDYLPLFAAGPAADHVIAFARGKD 816 (889)
T ss_pred hhcCCCeeeecccCchhHHHHHHhhccC
Confidence 11111100000 0012358999999653
No 123
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=81.30 E-value=7.9 Score=42.96 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE-e
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV-V 480 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv-V 480 (878)
+..-|.+-++.|+.+|+|.++|==- + .-.|... +..+.. ...=+.+|+|++++-|.++||.||-.+ +
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~---D--~f~~~~~------p~~~~~-~~~yT~~ei~ei~~yA~~~gI~vIPeid~ 82 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE---D--TFPYEGE------PEVGRM-RGAYTKEEIREIDDYAAELGIEVIPLIQT 82 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---c--ceecCCC------cccccC-CCCcCHHHHHHHHHHHHHcCCEEEecCCC
Confidence 5677888899999999999998211 1 0011111 111111 111256999999999999999999665 3
Q ss_pred cccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 481 FTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 481 ~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
+.|+.. .+.. +.|-...+.. ..-..||..+|++.++|.+.+.-.++-|.
T Consensus 83 pGH~~~-~l~~---~~~~~l~~~~--~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 83 LGHLEF-ILKH---PEFRHLREVD--DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHHH-HHhC---cccccccccC--CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 777653 1110 1111000000 11256899999999999999999996555
No 124
>TIGR03356 BGL beta-galactosidase.
Probab=79.58 E-value=11 Score=44.04 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCC-CCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKL-HGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~-yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
..|.-..+-|+-||+||+|++-+.=-+. .+.|. -|. -....++-.+++|++|+++||++|+++
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Ws--------------ri~p~g~~~--~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWP--------------RIFPEGTGP--VNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchh--------------hcccCCCCC--cCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 3577788889999999999998632121 11111 011 112246889999999999999999998
Q ss_pred ecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 480 VFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 480 V~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
. |. +-|.+.... + .+.++.+.+.+.+-++.-+++||
T Consensus 115 ~--Hf--------d~P~~l~~~--g--------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 115 Y--HW--------DLPQALEDR--G--------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred c--cC--------CccHHHHhc--C--------CCCChHHHHHHHHHHHHHHHHhC
Confidence 6 43 222222111 1 23456677777777777777776
No 125
>PLN03059 beta-galactosidase; Provisional
Probab=79.23 E-value=3.1 Score=51.70 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccC---CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTK---LHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~---~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
-..++|.-+|++|+|+|+. |-+.++-.|.+ .|. ...||.+||+.|++.||-|||=.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~t------------YV~Wn~HEp~~G~~dF~-------G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQT------------YVFWNGHEPSPGNYYFE-------DRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHcCCCeEEE------------EecccccCCCCCeeecc-------chHHHHHHHHHHHHcCCEEEecC
Confidence 3456788899999999997 33333333332 122 24899999999999999999853
No 126
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=78.55 E-value=4.8 Score=45.19 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~ 485 (878)
.+-++.||+.|+|+|-|=-.. +|.+ -|. ...+...+|.++++++||+|+||+=|..+-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv---------~P~~-------~g~-----~~~~~~~~~akrak~~Gm~vlldfHYSD~W 84 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV---------NPYD-------GGY-----NDLEDVIALAKRAKAAGMKVLLDFHYSDFW 84 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S---------S-TT-------TTT-----TSHHHHHHHHHHHHHTT-EEEEEE-SSSS-
T ss_pred CCHHHHHHhcCCCeEEEEecc---------CCcc-------ccc-----CCHHHHHHHHHHHHHCCCeEEEeecccCCC
Confidence 345899999999999983321 1222 111 146999999999999999999999887654
No 127
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=78.42 E-value=13 Score=45.99 Aligned_cols=126 Identities=20% Similarity=0.288 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHhcCCC--eEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVN--AILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt--~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
-++++.+.+..++.+++|+. ++|. +-+-.. +| .|| .+++ .|+ .|+.+|+.+|++|+++|
T Consensus 307 Y~nls~~~dvv~~~~~agiPld~~~~----DiDyMd-~y--kDF-Tvd~~~fp----------~~~~fv~~Lh~~G~kyv 368 (805)
T KOG1065|consen 307 YKNLSVVRDVVENYRAAGIPLDVIVI----DIDYMD-GY--KDF-TVDKVWFP----------DLKDFVDDLHARGFKYV 368 (805)
T ss_pred cccHHHHHHHHHHHHHcCCCcceeee----ehhhhh-cc--cce-eeccccCc----------chHHHHHHHHhCCCeEE
Confidence 36789999999999999987 6653 211110 12 222 3332 333 39999999999999987
Q ss_pred EEEecccCCCCc---CCCCCCCCCcc--ccCCC-----CCC-cccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 047308 477 LEVVFTRTADGA---LQGIDDSSYYY--AHRGE-----GIE-TTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFIN 543 (878)
Q Consensus 477 LDvV~NH~~~~~---~~~~d~~~yY~--~~~~~-----~~~-~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~ 543 (878)
+=+-++-....+ +........+. +.+.. .|+ ...-.|+.||.+.....+.+.-.-++.++|||=+|+
T Consensus 369 liidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 369 LIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred EEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 644322111111 11000011110 01100 111 123468899988888888888777889999999985
No 128
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=78.10 E-value=2.5 Score=46.57 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccC
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~ 484 (878)
.-..-+++||+||||+|-+ |++||.- +=.+.++++.+.||-||+|+--.+.
T Consensus 54 ~C~rDi~~l~~LgiNtIRV------------------Y~vdp~~-----------nHd~CM~~~~~aGIYvi~Dl~~p~~ 104 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRV------------------YSVDPSK-----------NHDECMSAFADAGIYVILDLNTPNG 104 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEE------------------S---TTS-------------HHHHHHHHHTT-EEEEES-BTTB
T ss_pred HHHHhHHHHHHcCCCEEEE------------------EEeCCCC-----------CHHHHHHHHHhCCCEEEEecCCCCc
Confidence 3344499999999999998 3444432 2335556677899999999976533
No 129
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=74.07 E-value=7.8 Score=41.34 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCCHHHHHH-------HHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHC
Q 047308 399 IAGTFSGVTE-------KVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN 471 (878)
Q Consensus 399 ~~Gt~~gi~~-------kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~ 471 (878)
.+|||..+.- -|.+.|+||+++|+++-= .-.. ..++..++|+.+|++
T Consensus 59 ~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G---------~~~i-----------------~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 59 PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDG---------SMEI-----------------SLEERCNLIERAKDN 112 (237)
T ss_pred CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCC---------ccCC-----------------CHHHHHHHHHHHHhC
Confidence 4577765442 256999999999998421 1111 138899999999999
Q ss_pred CCEEEEEEec
Q 047308 472 GIEVLLEVVF 481 (878)
Q Consensus 472 GI~VILDvV~ 481 (878)
|++|+-.+=.
T Consensus 113 g~~v~~EvG~ 122 (237)
T TIGR03849 113 GFMVLSEVGK 122 (237)
T ss_pred CCeEeccccc
Confidence 9999976543
No 130
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=73.10 E-value=1e+02 Score=41.07 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=46.5
Q ss_pred CCcccccCCC-----CHHHHHHHHHHHHHHHHhcCccEEEEccCcccccccccccCCchhHHHHHHcCccccccEEEeec
Q 047308 506 IETTNVLNCN-----YPTVQQMILNSLRHWVTEFHIDGFCFINASSLLRGFHGEYLSRPPLIEAIAFDPLLSKAKLIADY 580 (878)
Q Consensus 506 ~~~~~dln~~-----~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~~~~ia~d~~~~~~~ligE~ 580 (878)
|++.-.|.|+ +|.+.++|.+-.+--.+ -++|||+|+++.-+..... .++++. ..+.|+.++++|-
T Consensus 473 WGDcVKLRYG~~peDsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhVae------ylLd~A--R~vnPnLyV~AEL 542 (1464)
T TIGR01531 473 WGDSVKLRYGNKPEDSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHVAE------YLLDAA--RKYNPNLYVVAEL 542 (1464)
T ss_pred ccceeeeccCCCCcCCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHHHH------HHHHHH--hhcCCCeEEEeee
Confidence 5555667764 58888888887776664 5679999998766543321 123322 3456799999998
Q ss_pred CCCC
Q 047308 581 WDPH 584 (878)
Q Consensus 581 w~~~ 584 (878)
+.+.
T Consensus 543 FTGS 546 (1464)
T TIGR01531 543 FTGS 546 (1464)
T ss_pred cCCc
Confidence 8753
No 131
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=71.53 E-value=40 Score=36.93 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCC-----CCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCC
Q 047308 399 IAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYF-----PRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGI 473 (878)
Q Consensus 399 ~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~-----~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI 473 (878)
++-++....+-+|+-+++|+..|.+ +. ++|. ..|+..+ +. ..++++||+=++++|+
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv------D~--GW~~~~~~~~~d~~~~---~~--------~~dl~elv~Ya~~KgV 87 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV------DA--GWYGWEKDDDFDFTKP---IP--------DFDLPELVDYAKEKGV 87 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE------BT--TCCGS--TTT--TT-B----T--------T--HHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe------cc--cccccccccccccccc---CC--------ccCHHHHHHHHHHcCC
Confidence 3458999999999999999999998 22 2231 1222222 22 2689999999999999
Q ss_pred EEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccC
Q 047308 474 EVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 474 ~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a 544 (878)
+|+|=+..+.- ++..+ ..+.+ +.+.-++++.||.|+-+|-+
T Consensus 88 gi~lw~~~~~~------------------------~~~~~-----~~~~~-~~~f~~~~~~Gv~GvKidF~ 128 (273)
T PF10566_consen 88 GIWLWYHSETG------------------------GNVAN-----LEKQL-DEAFKLYAKWGVKGVKIDFM 128 (273)
T ss_dssp EEEEEEECCHT------------------------TBHHH-----HHCCH-HHHHHHHHHCTEEEEEEE--
T ss_pred CEEEEEeCCcc------------------------hhhHh-----HHHHH-HHHHHHHHHcCCCEEeeCcC
Confidence 99983322210 12222 23334 44555566999999999843
No 132
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=70.52 E-value=24 Score=41.91 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~N 482 (878)
..+.++=.-|+++||++|.|+-+.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~ 233 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVG 233 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccce
Confidence 344555555667999999999765
No 133
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=69.23 E-value=6.8 Score=46.60 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCH-HHHHHHHHHHHhcCCCeEEEccCcccCCCCC-CCCCCCCCCccCCCCC
Q 047308 399 IAGTF-SGVTEKVHHLKDLGVNAILLEPILSFDEQKG-PYFPRHFFSPTKLHGP 450 (878)
Q Consensus 399 ~~Gt~-~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~-gY~~~~yfa~d~~yGt 450 (878)
+.||| ..+.+-++.+++.|+..++|+|+++...... +|.|.+=|+.+|.|-.
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~ 66 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYID 66 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcC
Confidence 57999 8999999999999999999999998754443 8999999999998864
No 134
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=69.15 E-value=13 Score=39.18 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
..+.+-.+.|+++|+..|.|+|.+.....+ | ..+...|--.+-+.-+.++++++.+.+.++|+.|++
T Consensus 145 e~i~~ia~~l~~l~~~~~~llpyh~~g~~K--y-----~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 145 ENMQQALDVLIPLGIKQIHLLPFHQYGEPK--Y-----RLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCccchhH--H-----HHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 344555678888999999999988765433 2 122222211111222468899999999999999974
No 135
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=68.67 E-value=34 Score=38.78 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG 487 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~ 487 (878)
+-++-+|+.|...|-|+--+.-.-.-+.=...+|-..+..++ -+=+++|+++|+++||++.+ |-|..
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~k--------rDiv~El~~A~rk~Glk~G~---Y~S~~-- 161 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPK--------RDIVGELADACRKYGLKFGL---YYSPW-- 161 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGT--------S-HHHHHHHHHHHTT-EEEE---EEESS--
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCC--------CCHHHHHHHHHHHcCCeEEE---Eecch--
Confidence 447889999999999876442100000001123333332222 27899999999999999998 43332
Q ss_pred cCCCCCCCCCccccCCCC-CCcccccCCCC----HHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 488 ALQGIDDSSYYYAHRGEG-IETTNVLNCNY----PTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 488 ~~~~~d~~~yY~~~~~~~-~~~~~dln~~~----p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
+|++...... ........-.. ..+.+++..-++-.++.|.+|.+=||...
T Consensus 162 --------dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~ 216 (346)
T PF01120_consen 162 --------DWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW 216 (346)
T ss_dssp --------SCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT
T ss_pred --------HhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC
Confidence 1221110000 00000000001 12455777888888999999999999654
No 136
>PTZ00445 p36-lilke protein; Provisional
Probab=68.56 E-value=14 Score=38.77 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=43.7
Q ss_pred CHHHHHHH-HHHHHhcCCCeEEEccCcccCCC-----CCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEE
Q 047308 402 TFSGVTEK-VHHLKDLGVNAILLEPILSFDEQ-----KGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEV 475 (878)
Q Consensus 402 t~~gi~~k-LdyLk~LGvt~I~L~PI~~~~~~-----~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~V 475 (878)
+....+++ .+.|++.||.+|-+ +++.. .|||+-.+ +-+..+++.. -.+|+.|++++++.||+|
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~HsgG~~~~~--~~~~~~~~~~-----tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIAS----DFDLTMITKHSGGYIDPD--NDDIRVLTSV-----TPDFKILGKRLKNSNIKI 94 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEe----cchhhhhhhhcccccCCC--cchhhhhccC-----CHHHHHHHHHHHHCCCeE
Confidence 34445554 68899999999984 55432 24564333 2334444431 268999999999999999
Q ss_pred EE
Q 047308 476 LL 477 (878)
Q Consensus 476 IL 477 (878)
++
T Consensus 95 ~V 96 (219)
T PTZ00445 95 SV 96 (219)
T ss_pred EE
Confidence 75
No 137
>PLN02635 disproportionating enzyme
Probab=68.22 E-value=7.9 Score=46.30 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCCeEEEccCcccCC----CCCCCCCCCCCCccCCCCCC
Q 047308 398 DIAGTFSGVT-EKVHHLKDLGVNAILLEPILSFDE----QKGPYFPRHFFSPTKLHGPS 451 (878)
Q Consensus 398 ~~~Gt~~gi~-~kLdyLk~LGvt~I~L~PI~~~~~----~~~gY~~~~yfa~d~~yGt~ 451 (878)
.+.|||...+ +-++.+++.|.+.++|+|+++... ...+|.+.+=|+.++.|=+.
T Consensus 43 ~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~l 101 (538)
T PLN02635 43 YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISL 101 (538)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCH
Confidence 4579998766 679999999999999999987633 34578888888888877653
No 138
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=67.79 E-value=7.8 Score=43.01 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 047308 461 MKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFC 540 (878)
Q Consensus 461 lk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFR 540 (878)
..++++.+|++|++|++=|- +... +. ++. ..+ .--..++..|+-+++++.-+++++|.||+-
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~~---~~~-~~~------------~~~l~~~~~r~~fi~~iv~~l~~~~~DGid 108 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-GN---FDS-ELA------------HAVLSNPEARQRLINNILALAKKYGYDGVN 108 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-CC---CCH-HHH------------HHHhcCHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 35899999999999997552 2211 00 000 000 011346788999999999999999999999
Q ss_pred Ec
Q 047308 541 FI 542 (878)
Q Consensus 541 fD 542 (878)
+|
T Consensus 109 iD 110 (313)
T cd02874 109 ID 110 (313)
T ss_pred Ee
Confidence 98
No 139
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=66.55 E-value=14 Score=42.17 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~~ 486 (878)
++|+.|+++||+.|.| +|..+.... .-.+ .+-. +.++..+.++.+++.||. |.+|++++..+.
T Consensus 109 e~l~~l~~~G~~rvsl-GvQS~~~~~-------L~~l-~R~~-------s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 109 EFFAALRAAGFTRVSL-GMQSAAPHV-------LAVL-DRTH-------TPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHH-------HHHc-CCCC-------CHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 5799999999999997 444433211 0011 1111 348899999999999999 999999986431
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
..+-+.+.+++.+ +.++|.+.+
T Consensus 173 --------------------------------t~~~~~~tl~~~~-~l~~~~i~~ 194 (375)
T PRK05628 173 --------------------------------SDDDWRASLDAAL-EAGVDHVSA 194 (375)
T ss_pred --------------------------------CHHHHHHHHHHHH-hcCCCEEEe
Confidence 2455667777666 889888765
No 140
>PRK12568 glycogen branching enzyme; Provisional
Probab=65.78 E-value=17 Score=45.16 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=49.5
Q ss_pred CCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCCCCCceeEEEECCCcCCCCC
Q 047308 240 PMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMESTWNFVSYGYRFKGSFSQGDG 319 (878)
Q Consensus 240 ~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~~~g~~Y~y~i~~~~~~~~g 319 (878)
-||.|..++|.+.+|+|-|.|.+|.|+.- + + ... .+|.+ ....|+|.+.++.. ..|.+++.-. ++
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~-~-~~~---~~~~~--~~~~g~f~~~~~~~---~~y~~~~~~~----~~ 93 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLIDG-R-G-KLL---ARMQA--SPIDGVFEGILPAD---GPYRLRIVWP----DV 93 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEec-C-C-ccc---cccEe--cCCCCeEEEecCCC---CCEEEEEEeC----Cc
Confidence 58999766653589999999999999632 1 1 111 12321 24568999999843 2477777632 11
Q ss_pred CccccceeecCcccccc
Q 047308 320 YKSHLESVLLDPYAKII 336 (878)
Q Consensus 320 ~~~~~~~~~~DPyA~~~ 336 (878)
.....|||+...
T Consensus 94 -----~~~~~dpy~~~~ 105 (730)
T PRK12568 94 -----VQEIEDPYAFAP 105 (730)
T ss_pred -----eEEeeccccccc
Confidence 346789999764
No 141
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=64.35 E-value=1e+02 Score=33.98 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHH-HCCCEEEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLH-ANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH-~~GI~VILDvV~NH~~~ 486 (878)
.-|+.|+++|+|+|+|-+..+.+++ |-.+.. |=|+.+.-- +-+-|-+.+=+++ +.|++|..=+-.=
T Consensus 21 ~l~~ri~~~~~~tV~Lqaf~d~~gd-g~~~~~--YFpnr~lpv------raDlf~rvawql~tr~~v~VyAWMPvl---- 87 (294)
T PF14883_consen 21 KLIQRIKDMGINTVYLQAFADPDGD-GNADAV--YFPNRHLPV------RADLFNRVAWQLRTRAGVKVYAWMPVL---- 87 (294)
T ss_pred HHHHHHHHcCCCEEEEEeeeCCCCC-CceeeE--EcCCCCCch------HHHHHHHHHHHHhhhhCCEEEEeeehh----
Confidence 3478999999999999887654332 212211 112222221 2244555563555 8899997655321
Q ss_pred CcCCCCCCCCCcc--ccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYY--AHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~--~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+|.- ....+.. ............|..-+|++|+.|.+...-....-.+||+=|
T Consensus 88 -af~l-p~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 88 -AFDL-PKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred -hccC-CCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 1100 0001110 000011122356667789999999999999986569999999
No 142
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=61.68 E-value=12 Score=40.20 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=39.2
Q ss_pred CCCCHHHHHH-------HHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHC
Q 047308 399 IAGTFSGVTE-------KVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN 471 (878)
Q Consensus 399 ~~Gt~~gi~~-------kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~ 471 (878)
.+||+..+.- -|+++|+||+++|+++= |.-.. ..++..++|+.+.++
T Consensus 72 ~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd---------Gti~l-----------------~~~~r~~~I~~~~~~ 125 (244)
T PF02679_consen 72 PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISD---------GTIDL-----------------PEEERLRLIRKAKEE 125 (244)
T ss_dssp E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-----------SSS--------------------HHHHHHHHHHHCCT
T ss_pred CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC---------CceeC-----------------CHHHHHHHHHHHHHC
Confidence 3677766553 38999999999999832 11111 238899999999999
Q ss_pred CCEEEEEEe
Q 047308 472 GIEVLLEVV 480 (878)
Q Consensus 472 GI~VILDvV 480 (878)
|++|+-.|=
T Consensus 126 Gf~v~~EvG 134 (244)
T PF02679_consen 126 GFKVLSEVG 134 (244)
T ss_dssp TSEEEEEES
T ss_pred CCEEeeccc
Confidence 999998775
No 143
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=61.05 E-value=33 Score=37.15 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccE
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDG 538 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDG 538 (878)
.++.+=|++|+++|++|+|=+ . +.. ... | ..+ ..+++-|+-+++++.-++++|++||
T Consensus 59 ~~~~~~i~~~~~~g~KVllSi--G-----G~~---~~~-f-----------s~~-a~~~~~r~~f~~s~~~~~~~~~~DG 115 (256)
T cd06546 59 TTLWTELAILQSSGVKVMGML--G-----GAA---PGS-F-----------SRL-DDDDEDFERYYGQLRDMIRRRGLDG 115 (256)
T ss_pred hHHHHHHHHHHhCCCEEEEEE--C-----CCC---CCC-c-----------ccc-cCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 356666678899999999843 1 100 000 1 111 1345667777888888999999999
Q ss_pred EEEc
Q 047308 539 FCFI 542 (878)
Q Consensus 539 FRfD 542 (878)
+-||
T Consensus 116 iDiD 119 (256)
T cd06546 116 LDLD 119 (256)
T ss_pred eEEe
Confidence 9998
No 144
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=60.56 E-value=14 Score=44.43 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
-+.|..+|++|+|+|+--=.+...+ ..+.| .|+.. .||.+||+.+|+.|+-|||=+=+
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y----------~FsG~-------~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNLHEPSPGKY----------DFSGR-------YDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecccccCCCCcc----------cccch-------hHHHHHHHHHHHCCeEEEecCCC
Confidence 3468889999999999632222111 11122 13433 79999999999999999996653
No 145
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=59.85 E-value=17 Score=40.02 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCC----CCCCCC--------CCCCCccCCCCCCCCCcchHHHHHHHHHHHH
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQ----KGPYFP--------RHFFSPTKLHGPSRGSISAINSMKEMVKKLH 469 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~----~~gY~~--------~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH 469 (878)
+...+..-|+.+|+-|+|.|+++=+-+.+.. ..|+.+ .||-.+++.|= +-+.++|+.|.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF---------~~~d~~i~~a~ 98 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYF---------DHLDRRIEKAN 98 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HH---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHH---------HHHHHHHHHHH
Confidence 3445555699999999999998765443321 112222 34555565554 78999999999
Q ss_pred HCCCEEEEEEeccc
Q 047308 470 ANGIEVLLEVVFTR 483 (878)
Q Consensus 470 ~~GI~VILDvV~NH 483 (878)
++||.+ ++|+-|
T Consensus 99 ~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 99 ELGIEA--ALVPFW 110 (289)
T ss_dssp HTT-EE--EEESS-
T ss_pred HCCCeE--EEEEEE
Confidence 999988 466655
No 146
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=59.28 E-value=30 Score=41.44 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG 487 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~ 487 (878)
++|+.|+++|+|.|+|-. ..+++.- .-.+... -+.++..+-++.+++.|++|.+|+.++--+.
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~~d~V-------L~~inRg--------ht~~~v~~Ai~~lr~~G~~v~~~LM~GLPgq- 269 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTIYNDI-------LERTKRG--------HTVRDVVEATRLLRDAGLKVVYHIMPGLPGS- 269 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHH-------HHHhCCC--------CCHHHHHHHHHHHHHcCCeEEEEeecCCCCC-
Confidence 579999999999999843 3322110 0111111 1358999999999999999999999974321
Q ss_pred cCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH--hcCccEEEE
Q 047308 488 ALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT--EFHIDGFCF 541 (878)
Q Consensus 488 ~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~--e~gVDGFRf 541 (878)
..+.+++.++..++ .+++|++++
T Consensus 270 -------------------------------t~e~~~~t~~~l~~~~~l~pD~Iki 294 (522)
T TIGR01211 270 -------------------------------SFERDLEMFREIFEDPRFKPDMLKI 294 (522)
T ss_pred -------------------------------CHHHHHHHHHHHHhccCCCcCEEEE
Confidence 12344566666664 489999998
No 147
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=59.11 E-value=12 Score=46.32 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCC-C---C-CCCCCCCCCCccCCCC
Q 047308 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDE-Q---K-GPYFPRHFFSPTKLHG 449 (878)
Q Consensus 398 ~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~-~---~-~gY~~~~yfa~d~~yG 449 (878)
.+.|||..+.+-+|.+++.|.+.|+|+||.+... . . .+|.+.+=|+.+|.|-
T Consensus 77 ~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyI 133 (745)
T PLN03236 77 VGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYL 133 (745)
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHc
Confidence 4679999988889999999999999999987542 1 2 3788888888876554
No 148
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=58.41 E-value=2e+02 Score=32.14 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=74.8
Q ss_pred cEEEEEecccccCCC--CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 377 LVVYRLNVMRFSEHK--SSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~--~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
-.||=++|..=.+.. -+..|+-.+=....+.+.+..+.++||++|-|-||-+.....+ ..-+.++
T Consensus 32 dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~g----s~A~~~~--------- 98 (322)
T PRK13384 32 DLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHHKDAKG----SDTWDDN--------- 98 (322)
T ss_pred HceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCc----ccccCCC---------
Confidence 468888886422211 1334555556788999999999999999999999943211110 0001111
Q ss_pred cchHHHHHHHHHHHHH--CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHA--NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT 532 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~--~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~ 532 (878)
.-+.+-|+++++ -.|-||-||-+......+ .++-..+=...|.+..+.+.....-..
T Consensus 99 ----g~v~~air~iK~~~pdl~vi~DVcLc~YT~hG----------------HcGil~~g~i~ND~Tl~~L~~~Als~A- 157 (322)
T PRK13384 99 ----GLLARMVRTIKAAVPEMMVIPDICFCEYTDHG----------------HCGVLHNDEVDNDATVENLVKQSVTAA- 157 (322)
T ss_pred ----ChHHHHHHHHHHHCCCeEEEeeeecccCCCCC----------------ceeeccCCcCccHHHHHHHHHHHHHHH-
Confidence 123444444444 389999999987543211 011111101446677788888777777
Q ss_pred hcCccE
Q 047308 533 EFHIDG 538 (878)
Q Consensus 533 e~gVDG 538 (878)
+-|.|-
T Consensus 158 ~AGADi 163 (322)
T PRK13384 158 KAGADM 163 (322)
T ss_pred HcCCCe
Confidence 678874
No 149
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=57.84 E-value=47 Score=36.42 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 047308 409 KVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTR 483 (878)
Q Consensus 409 kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH 483 (878)
.|.-||+-|||.|-|-= +..+ |+ +-...||... ...+-.-++-+.|.+.||+|++|+-|.-
T Consensus 68 ~~~iLK~~GvNyvRlRv-wndP-----~d-----sngn~yggGn---nD~~k~ieiakRAk~~GmKVl~dFHYSD 128 (403)
T COG3867 68 ALQILKNHGVNYVRLRV-WNDP-----YD-----SNGNGYGGGN---NDLKKAIEIAKRAKNLGMKVLLDFHYSD 128 (403)
T ss_pred HHHHHHHcCcCeEEEEE-ecCC-----cc-----CCCCccCCCc---chHHHHHHHHHHHHhcCcEEEeeccchh
Confidence 47889999999988732 2211 11 1112233221 1223344455677889999999997753
No 150
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=57.70 E-value=19 Score=41.81 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCC-CCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPR-HFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~-~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
.+-+.++|+.|+|+|-| |+. |... ..-..+|.+-.. ....-+.+.|+.|.+.||+|++|+
T Consensus 76 ~~~~~~ik~~G~n~VRi-Pi~--------~~~~~~~~~~~p~~~~~----~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 76 EEDFDQIKSAGFNAVRI-PIG--------YWALQATDGDNPYLIGL----TQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhHHHHHHHcCCcEEEc-ccc--------hhhhhccCCCCCCeecc----hHHHHHHHHHHHHHhcCeeEEEEe
Confidence 45589999999999997 553 2111 000023333211 012356777999999999999997
No 151
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.67 E-value=23 Score=46.52 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=49.8
Q ss_pred CCceEEecCCeEEEEEEcCCCCeEEEEEecCCCCCCCceeeccCccccCCCCEEEEEEcCC--CCCceeEEEECCCcCCC
Q 047308 240 PMGLSFSTDGSLNFAIFSRHAQGVVLCLYDDTTADRPALELDLDPYINRSGDIWHASMEST--WNFVSYGYRFKGSFSQG 317 (878)
Q Consensus 240 ~lGa~~~~~g~v~F~vwaP~A~~V~l~l~~~~~~~~~~~~~~l~~~~~~~~gvW~v~i~~~--~~g~~Y~y~i~~~~~~~ 317 (878)
-||.|...+|.+.+++|-|.|++|.|+.- +.. .+|. ....|+|.+.++.. .....|.+++...
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~---~~~-----~~~~---~~~~g~~~~~~~~~~~~~~~~y~~~~~~~---- 586 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA---AGR-----VPMT---HEAHGVWAAVLEPLQAGHVPDYRLEVTYD---- 586 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC---CCc-----eeee---eCCCCEEEEeccccccCCCCCeEEEEEeC----
Confidence 48999766663479999999999999631 111 1232 34568999999842 1212488877632
Q ss_pred CCCccccceeecCcccccc
Q 047308 318 DGYKSHLESVLLDPYAKII 336 (878)
Q Consensus 318 ~g~~~~~~~~~~DPyA~~~ 336 (878)
++. .....|||+...
T Consensus 587 ~~~----~~~~~d~y~~~~ 601 (1224)
T PRK14705 587 GAE----PVTIDDPYHYLP 601 (1224)
T ss_pred Ccc----ceEeccccccCC
Confidence 111 245779999753
No 152
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=57.54 E-value=30 Score=40.37 Aligned_cols=85 Identities=15% Similarity=0.334 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEE-EEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVL-LEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VI-LDvV~NH~~~ 486 (878)
++|..|+++||+.|.| .|..+.... .-.+.... +.++..+.|+.+|+.||.+| +|+.++..+
T Consensus 142 e~l~~l~~~G~~rvsl-GvQS~~~~~-------L~~l~R~~--------~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~- 204 (430)
T PRK08208 142 EKLALLAARGVNRLSI-GVQSFHDSE-------LHALHRPQ--------KRADVHQALEWIRAAGFPILNIDLIYGIPG- 204 (430)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHH-------HHHhCCCC--------CHHHHHHHHHHHHHcCCCeEEEEeecCCCC-
Confidence 5799999999999997 333332210 00111111 34899999999999999865 999997542
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+..+.+.+.+++.+ +.+++...+
T Consensus 205 -------------------------------qt~e~~~~~l~~~~-~l~~~~is~ 227 (430)
T PRK08208 205 -------------------------------QTHASWMESLDQAL-VYRPEELFL 227 (430)
T ss_pred -------------------------------CCHHHHHHHHHHHH-hCCCCEEEE
Confidence 12455666777776 788887776
No 153
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=56.30 E-value=36 Score=40.72 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccCCCC-----------------cC-CCCCCCCCccccCCCCCCcccccCCCC--HH
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFTRTADG-----------------AL-QGIDDSSYYYAHRGEGIETTNVLNCNY--PT 518 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~NH~~~~-----------------~~-~~~d~~~yY~~~~~~~~~~~~dln~~~--p~ 518 (878)
++++++-+.|+.+||++|-|+-+-=..++ .. -.-.+|+||...+ ..|+. |-+|+.. ..
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~G-Q~WG~-P~y~w~~l~~~ 289 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQG-QNWGL-PPYDWNVLKAR 289 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCcccccC-CCCCC-CCcCHHHHHhc
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEccCcccccccc----------cccCCch--hHHHHHHcCccccccEEEee
Q 047308 519 VQQMILNSLRHWVTEFHIDGFCFINASSLLRGFH----------GEYLSRP--PLIEAIAFDPLLSKAKLIAD 579 (878)
Q Consensus 519 Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l~~~~~----------~~~~~~~--~~~~~ia~d~~~~~~~ligE 579 (878)
--+..++-+++=++ .+|++|+|.+-.+.+=++ +.|...+ .++..++...... +.+|||
T Consensus 290 gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~-~~vIaE 359 (513)
T TIGR00217 290 GYEWWIKRLGANMQ--YADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDN-LKIIGE 359 (513)
T ss_pred CcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCC-CcEEee
No 154
>PRK15452 putative protease; Provisional
Probab=56.02 E-value=81 Score=37.05 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
.+||++.|+.||++|++|.+ ..|.... ..-.+.+.+.+.... +.|||
T Consensus 45 ~edl~eav~~ah~~g~kvyv--t~n~i~~------------------------------e~el~~~~~~l~~l~-~~gvD 91 (443)
T PRK15452 45 HENLALGINEAHALGKKFYV--VVNIAPH------------------------------NAKLKTFIRDLEPVI-AMKPD 91 (443)
T ss_pred HHHHHHHHHHHHHcCCEEEE--EecCcCC------------------------------HHHHHHHHHHHHHHH-hCCCC
Confidence 48999999999999999977 4443210 011344455555555 88999
Q ss_pred EEEEc
Q 047308 538 GFCFI 542 (878)
Q Consensus 538 GFRfD 542 (878)
|+-+-
T Consensus 92 gvIV~ 96 (443)
T PRK15452 92 ALIMS 96 (443)
T ss_pred EEEEc
Confidence 99873
No 155
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.63 E-value=37 Score=39.88 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCC--------------CCCCCC---CCCCCccCCCCCC------CCCcchH
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQ--------------KGPYFP---RHFFSPTKLHGPS------RGSISAI 458 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~--------------~~gY~~---~~yfa~d~~yGt~------~~~~~~i 458 (878)
+...|.+-||.+...++|.++|= -.+.. .+.|.+ .....+.+.+|+. .+..=+.
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlH---LtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLH---LTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEE---eecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH
Confidence 56777778899999999988872 11111 111211 1122223334322 1223367
Q ss_pred HHHHHHHHHHHHCCCEEEEEE-ecccCCCC--c----CCCCC--CC-----CCccccCC--------CCCCcccccCCCC
Q 047308 459 NSMKEMVKKLHANGIEVLLEV-VFTRTADG--A----LQGID--DS-----SYYYAHRG--------EGIETTNVLNCNY 516 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDv-V~NH~~~~--~----~~~~d--~~-----~yY~~~~~--------~~~~~~~dln~~~ 516 (878)
+|+|+||+-|+++||.||-.+ ++.|+..- + +..+. +. .|...+.. .++.. ..||..+
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~L~p~~ 175 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTD-NVINPCM 175 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccccccccccc-ccccCCc
Confidence 999999999999999999887 58887631 1 11110 00 11111110 01112 5688999
Q ss_pred HHHHHHHHHHHHHHHH
Q 047308 517 PTVQQMILNSLRHWVT 532 (878)
Q Consensus 517 p~Vr~~iid~l~~Wl~ 532 (878)
|.+.++|.+.+.-.++
T Consensus 176 ~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 176 PSTYRFVDKVIDEIAR 191 (445)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999988884
No 156
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=54.68 E-value=45 Score=34.17 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHC--CCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCc
Q 047308 459 NSMKEMVKKLHAN--GIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHI 536 (878)
Q Consensus 459 ~elk~LV~~aH~~--GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gV 536 (878)
+.....++++|++ |++|++=+--... ... . --..++..|+.+++++.-+++++++
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~~----------~~~------------~-~~~~~~~~~~~f~~~~~~~v~~~~~ 105 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWTD----------SSP------------F-TLASDPASRAAFANSLVSFLKTYGF 105 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCC----------CCC------------c-hhhcCHHHHHHHHHHHHHHHHHcCC
Confidence 5667778888887 9999986621110 000 0 1134667888899999999999999
Q ss_pred cEEEEc
Q 047308 537 DGFCFI 542 (878)
Q Consensus 537 DGFRfD 542 (878)
||+-+|
T Consensus 106 DGidiD 111 (210)
T cd00598 106 DGVDID 111 (210)
T ss_pred CceEEe
Confidence 999998
No 157
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=54.23 E-value=37 Score=32.03 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=38.7
Q ss_pred eEEEEEEcC--CCCeEEEEEecCCCC--CCCceeeccCccc-cCCCCEEEEEEcCCCCCceeEEEECCC
Q 047308 250 SLNFAIFSR--HAQGVVLCLYDDTTA--DRPALELDLDPYI-NRSGDIWHASMESTWNFVSYGYRFKGS 313 (878)
Q Consensus 250 ~v~F~vwaP--~A~~V~l~l~~~~~~--~~~~~~~~l~~~~-~~~~gvW~v~i~~~~~g~~Y~y~i~~~ 313 (878)
.+++||++. .+++|.|+.-++... ......++|.+.. ....+.|+++|+.......|.|+|.++
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~ 90 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDG 90 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEET
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeC
Confidence 588999976 567777754333221 1222344554322 233469999998766678899999854
No 158
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=51.56 E-value=1.3e+02 Score=34.80 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCC--CCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYF--PRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTA 485 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~--~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~ 485 (878)
+-++-+|+.|...|-|+--+. +..--|+ ..+|-.++.-+. -+=+++|+++|+++||++-+ | |..
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHH--DGF~lw~S~~t~~n~~~~~pk--------rDiv~el~~A~rk~Glk~G~---Y-~S~ 150 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHH--DGFCLWDSKYSNWNAVDTGPK--------RDLVGELADAVRKRGLKFGL---Y-HSL 150 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeec--CCccccCCCCCCCcccCCCCC--------cchHHHHHHHHHHcCCeEEE---E-cCH
Confidence 447889999999999865432 1000011 123333332221 27799999999999999988 2 221
Q ss_pred CCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHH---HHHHHHHHHhcCccEEEEccC
Q 047308 486 DGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMI---LNSLRHWVTEFHIDGFCFINA 544 (878)
Q Consensus 486 ~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~i---id~l~~Wl~e~gVDGFRfD~a 544 (878)
.+. .++.|-.... ........+...+|+ ..-++-.+..||-|.+=||..
T Consensus 151 ~DW----~~p~y~~~~~------~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 151 FDW----FNPLYAGPTS------SDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred HHh----CCCccccccc------cccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 111 1122211000 001122345567777 777888888999999999964
No 159
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=51.15 E-value=23 Score=43.94 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEccCccc----CCCCCCCCCCCCCCccCCCCCC
Q 047308 398 DIAGTFSGVTEKVHHLKDLGVNAILLEPILSF----DEQKGPYFPRHFFSPTKLHGPS 451 (878)
Q Consensus 398 ~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~----~~~~~gY~~~~yfa~d~~yGt~ 451 (878)
.+.|||..+.+-++.+++.|.+.|+|+|+... +....+|.|.+=|+.++.|-..
T Consensus 159 ~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~ 216 (695)
T PRK11052 159 WGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDV 216 (695)
T ss_pred CCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCH
Confidence 46799999888899999999999999999853 2234478888888888888753
No 160
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=50.98 E-value=85 Score=37.23 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|.-..+-++-+|+||+|+.-+.=-+..-. |++.-+. -....++=.++||++|+++||++|+.+.
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~------------P~g~~~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLF------------PQGDELT--PNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeee------------eCCCCCC--CCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 4588888899999999999998743332110 1100010 1233578899999999999999998764
Q ss_pred cccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 481 FTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 481 ~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
|.. -|.|... ..++ +.++.+.+++.+-+++.+++||
T Consensus 134 --H~~--------~P~~l~~-~~GG--------W~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 134 --HFD--------VPMHLVT-EYGS--------WRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred --CCC--------CCHHHHH-hcCC--------CCCHHHHHHHHHHHHHHHHHhc
Confidence 542 2222211 1011 3445666666666665555553
No 161
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=50.78 E-value=3.5e+02 Score=30.13 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=73.5
Q ss_pred cEEEEEecccccCCC--CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 377 LVVYRLNVMRFSEHK--SSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~--~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
--||=++|..=.+.. -+..|+-.+=+...+.+.+..+.+|||++|-|-||-+..... | ..-+.++ |
T Consensus 22 dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~-g---s~A~~~~---g----- 89 (314)
T cd00384 22 DLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIPEHKDEI-G---SEAYDPD---G----- 89 (314)
T ss_pred HceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-c---ccccCCC---C-----
Confidence 357777776432221 133455556678999999999999999999999994321111 1 1111111 1
Q ss_pred cchHHHHHHHHHHHHH--CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHA--NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT 532 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~--~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~ 532 (878)
=+.+-|+++++ -.|-||-||-+......+= ++-..+=.-.|.+..+.+.....-..
T Consensus 90 -----~v~~air~iK~~~p~l~vi~DvcLc~YT~hGH----------------cGil~~~~idND~Tl~~L~k~Als~A- 147 (314)
T cd00384 90 -----IVQRAIRAIKEAVPELVVITDVCLCEYTDHGH----------------CGILKDDYVDNDATLELLAKIAVSHA- 147 (314)
T ss_pred -----hHHHHHHHHHHhCCCcEEEEeeeccCCCCCCc----------------ceeccCCcCccHHHHHHHHHHHHHHH-
Confidence 13333444443 3899999999875432110 01000002346667777777777666
Q ss_pred hcCccE
Q 047308 533 EFHIDG 538 (878)
Q Consensus 533 e~gVDG 538 (878)
+-|.|-
T Consensus 148 ~AGADi 153 (314)
T cd00384 148 EAGADI 153 (314)
T ss_pred HcCCCe
Confidence 677774
No 162
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=48.07 E-value=1.1e+02 Score=33.94 Aligned_cols=131 Identities=9% Similarity=0.048 Sum_probs=74.1
Q ss_pred cEEEEEecccccCCC--CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 377 LVVYRLNVMRFSEHK--SSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~--~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
--||=++|..=.+.. -+..|+-.+=.+..+.+.+..+.+|||++|-|-||-+....+. . .-...|..+
T Consensus 22 dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~-~------~gs~a~~~~--- 91 (320)
T cd04824 22 NLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDD-R------SGSAADDED--- 91 (320)
T ss_pred HceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCc-C------ccccccCCC---
Confidence 467888776522211 1334555566789999999999999999999999943211110 1 000111111
Q ss_pred cchHHHHHHHHHHHHH--CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcc-cccCCCCHHHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHA--NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETT-NVLNCNYPTVQQMILNSLRHWV 531 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~--~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~-~dln~~~p~Vr~~iid~l~~Wl 531 (878)
+ =+.+-|+++++ -.|-||-||-+......+ .++-. .+=.-.|.+..+.+.+...-..
T Consensus 92 -g---~v~~air~iK~~~pdl~vi~Dvclc~YT~hG----------------HcGil~~~g~vdND~Tl~~L~k~Avs~A 151 (320)
T cd04824 92 -G---PVIQAIKLIREEFPELLIACDVCLCEYTSHG----------------HCGILYEDGTINNEASVKRLAEVALAYA 151 (320)
T ss_pred -C---hHHHHHHHHHHhCCCcEEEEeeeccCCCCCC----------------cceeECCCCcCcCHHHHHHHHHHHHHHH
Confidence 1 23334444444 489999999987543211 00100 0001346677777777777777
Q ss_pred HhcCccE
Q 047308 532 TEFHIDG 538 (878)
Q Consensus 532 ~e~gVDG 538 (878)
+-|.|-
T Consensus 152 -~AGADi 157 (320)
T cd04824 152 -KAGAHI 157 (320)
T ss_pred -HhCCCE
Confidence 677773
No 163
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.95 E-value=1.6e+02 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+.+.++.++++|+++|+|.+.. ... ...+.+ +. .++++++-+.+.+.||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~-~~~---~~~~~~-------~~--------~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE-SDE---RLARLD-------WS--------KEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC-ccc---cccccc-------CC--------HHHHHHHHHHHHHcCCCceE
Confidence 45677999999999999995321 000 011111 11 26788889999999999874
No 164
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.76 E-value=45 Score=39.16 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCC-CEEEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANG-IEVLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~G-I~VILDvV~NH~~~ 486 (878)
++|..|+++|||.|.| .|..+...- -...|-. .+.++..+.|+.+++.| +.|.+|++|+.-+.
T Consensus 164 e~l~~l~~aGvnRiSi-GVQSf~d~v-----------Lk~lgR~----~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 164 EKADAALDAGANRFSI-GVQSFNTQV-----------RRRAGRK----DDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHcCCCEEEe-cCCcCCHHH-----------HHHhCCC----CCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 5899999999999986 555543210 0111100 12488999999999999 88999999985431
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
..+-+.+.+++-+ ++++|+..+
T Consensus 228 --------------------------------T~e~~~~~l~~~~-~l~~~~is~ 249 (449)
T PRK09058 228 --------------------------------TPEIWQQDLAIVR-DLGLDGVDL 249 (449)
T ss_pred --------------------------------CHHHHHHHHHHHH-hcCCCEEEE
Confidence 2345566677766 789988775
No 165
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=47.29 E-value=84 Score=35.73 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~~ 486 (878)
++|+-|+++|+|.|.| +|..+...- ...-.+-. +.++..+.|+.+++.|+. |-+|+.++..+.
T Consensus 104 e~l~~lk~~G~nrisi-GvQS~~d~v--------L~~l~R~~-------~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 104 SQINLLKKNKVNRISL-GVQSMNNNI--------LKQLNRTH-------TIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHH--------HHHcCCCC-------CHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 6799999999999986 555443210 00001111 358999999999999997 899999998776
Q ss_pred C
Q 047308 487 G 487 (878)
Q Consensus 487 ~ 487 (878)
.
T Consensus 168 t 168 (353)
T PRK05904 168 K 168 (353)
T ss_pred C
Confidence 3
No 166
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.94 E-value=21 Score=40.29 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 463 EMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 463 ~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
..|++||++|++|+-=+.+...+. ..+. ..|=-+++..+..+++.|.--++.||+||+=+|
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~--------~~~~-----------~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN 110 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQ--------VEWL-----------EDFLKKDEDGSFPVADKLVEVAKYYGFDGWLIN 110 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCc--------hHHH-----------HHHhccCcccchHHHHHHHHHHHHhCCCceEee
Confidence 678899999999998665543210 0000 011111134556667777777789999999997
Q ss_pred c
Q 047308 543 N 543 (878)
Q Consensus 543 ~ 543 (878)
-
T Consensus 111 ~ 111 (339)
T cd06547 111 I 111 (339)
T ss_pred e
Confidence 3
No 167
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=46.92 E-value=1.1e+02 Score=33.56 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccC--CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCcC
Q 047308 412 HLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTK--LHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGAL 489 (878)
Q Consensus 412 yLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~--~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~ 489 (878)
|-.+-.++.|-|.=+..+.. +|+-..||-.... .++ .-.+|.+-|+.|+++|++|+|=+ +
T Consensus 19 ~C~~~~~dii~i~Fl~~~~~--~~~p~~n~~~~c~~~~~~-------~c~~~~~dI~~cq~~G~KVlLSI-----G---- 80 (280)
T cd02877 19 YCDTGNYDIVNISFLNVFGS--GGTPGLNFAGHCGGSTYP-------NCPQLGADIKHCQSKGKKVLLSI-----G---- 80 (280)
T ss_pred HhCCCCccEEEEEeEcccCC--CCCcccCccccCcccccc-------cchhHHHHHHHHHHCCCEEEEEc-----c----
Confidence 34455577777655444443 3343333322111 111 12689999999999999999932 0
Q ss_pred CCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHH---------H---hcCccEEEEc
Q 047308 490 QGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWV---------T---EFHIDGFCFI 542 (878)
Q Consensus 490 ~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl---------~---e~gVDGFRfD 542 (878)
++. ....+.++.-++.+.+.+..+. + ++++|||-||
T Consensus 81 ---------------G~~--~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D 128 (280)
T cd02877 81 ---------------GAG--GSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFD 128 (280)
T ss_pred ---------------CCC--CCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEe
Confidence 110 1122345666777777765443 2 4679999998
No 168
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=46.34 E-value=59 Score=36.94 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=65.5
Q ss_pred cEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcc
Q 047308 377 LVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~ 456 (878)
.+-.|++++.++ .++|..|+++||+.|.|. |..+.... .-.+ .+-.
T Consensus 88 eitie~np~~lt------------------~e~l~~l~~~Gv~risiG-vqS~~~~~-------l~~l-gR~~------- 133 (360)
T TIGR00539 88 EITTEANPELIT------------------AEWCKGLKGAGINRLSLG-VQSFRDDK-------LLFL-GRQH------- 133 (360)
T ss_pred EEEEEeCCCCCC------------------HHHHHHHHHcCCCEEEEe-cccCChHH-------HHHh-CCCC-------
Confidence 356677777664 357999999999999973 33322210 1111 2222
Q ss_pred hHHHHHHHHHHHHHCCCE-EEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 457 AINSMKEMVKKLHANGIE-VLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~-VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
+.++..+.|+.+++.|+. |-+|+.++..+. ..+-+.+.+.+-+ +.+
T Consensus 134 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq--------------------------------t~~~~~~~l~~~~-~l~ 180 (360)
T TIGR00539 134 SAKNIAPAIETALKSGIENISLDLMYGLPLQ--------------------------------TLNSLKEELKLAK-ELP 180 (360)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeccCCCCCC--------------------------------CHHHHHHHHHHHH-ccC
Confidence 348999999999999995 789999975431 2345566666665 889
Q ss_pred ccEEEE
Q 047308 536 IDGFCF 541 (878)
Q Consensus 536 VDGFRf 541 (878)
+|.+.+
T Consensus 181 ~~~is~ 186 (360)
T TIGR00539 181 INHLSA 186 (360)
T ss_pred CCEEEe
Confidence 988776
No 169
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=45.28 E-value=63 Score=36.60 Aligned_cols=86 Identities=17% Similarity=0.303 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTA 485 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~ 485 (878)
.++|..|+++|||.|.| .|..+.... .-.+ .+-. +.++..+.|+.+++.|+. |-+|+.++..+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~~~-------L~~l-gR~~-------~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNEDK-------LKFL-GRIH-------SQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHH-------HHHc-CCCC-------CHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 36899999999999996 455443211 0011 1211 248999999999999996 66999997532
Q ss_pred CCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 486 DGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 486 ~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+..+-+.+.+++-+ +.++|.+.+
T Consensus 162 --------------------------------qt~~~~~~~l~~~~-~l~~~~is~ 184 (350)
T PRK08446 162 --------------------------------DNKKLLKEELKLAK-ELPINHLSA 184 (350)
T ss_pred --------------------------------CCHHHHHHHHHHHH-hcCCCEEEe
Confidence 12344556666655 788887776
No 170
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=45.26 E-value=51 Score=41.04 Aligned_cols=82 Identities=6% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccCCC--CcC----------CCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHH
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFTRTAD--GAL----------QGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNS 526 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~NH~~~--~~~----------~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~ 526 (878)
.+++++-+.|+++||++|-|+-+-=... +.+ ..-.+|++|...+. .||. |.+|+. .+-.+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~GQ-nWG~-P~YnW~-----~l~~dg 346 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDANGQ-NWGF-PTYDWE-----EMAEDD 346 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcccC-cCCC-CCcCHH-----HHHhcC
Confidence 6778888889999999999997643222 211 01123566654431 1221 344432 222344
Q ss_pred HHHHHHhcC-----ccEEEEccCccc
Q 047308 527 LRHWVTEFH-----IDGFCFINASSL 547 (878)
Q Consensus 527 l~~Wl~e~g-----VDGFRfD~a~~l 547 (878)
..+|.+.+. .|++|+|.+-.+
T Consensus 347 Y~WWr~Rlr~~~~~~dalRIDH~~Gf 372 (745)
T PLN03236 347 YAWWRARMQHLEQFFSAIRIDHILGF 372 (745)
T ss_pred cHHHHHHHHHHHHhCCeEEeechhhh
Confidence 555655443 699999965543
No 171
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=45.11 E-value=49 Score=34.33 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEE
Q 047308 406 VTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEV 475 (878)
Q Consensus 406 i~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~V 475 (878)
+...+..||++|++.|=++|+- |.. .++|||.+.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~---------------------Gl~-----~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG---------------------GLK-----HLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T---------------------TTT-----THHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC---------------------Ccc-----cHHHHHHHHHHHHHcCcee
Confidence 3445899999999999998863 111 4688888888888888865
No 172
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.87 E-value=39 Score=31.87 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
..+.+-++.+.++|+.+|||.|= .+-+++++.|+++||+|+-
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g--------------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG--------------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT--------------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc--------------------------------hHHHHHHHHHHHcCCEEEe
Confidence 34566789999999999999773 1345778889999999873
No 173
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=44.45 E-value=1.1e+02 Score=36.29 Aligned_cols=101 Identities=8% Similarity=0.083 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC-CCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR-GSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~-~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
..|.-..|-|..+|+||+|+--+.=-+. .+-|. |..+ -....++=.++||++|.++||+.|+.+
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWs--------------RI~P~-G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWT--------------RIFPK-GDEAQPNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccce--------------eeccC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3567778889999999999987632222 11111 1100 123357889999999999999999876
Q ss_pred ecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC
Q 047308 480 VFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH 535 (878)
Q Consensus 480 V~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g 535 (878)
. |.. -|.+... ..+ .+.++++.+++.+-++.-+++||
T Consensus 131 ~--H~d--------lP~~L~~-~yG--------GW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 131 S--HFE--------MPLHLVQ-QYG--------SWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred e--CCC--------CCHHHHH-hcC--------CCCChHHHHHHHHHHHHHHHHhc
Confidence 4 542 1222211 001 13456666667766666666554
No 174
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=43.77 E-value=68 Score=35.89 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=33.5
Q ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCccc
Q 047308 505 GIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINASSL 547 (878)
Q Consensus 505 ~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~~l 547 (878)
+|+.-..+++.+++.|++|++-+.--+ +.|+|||-+|.+...
T Consensus 131 ~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 131 DWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred CCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 454446788999999999999877666 889999999976543
No 175
>PLN02950 4-alpha-glucanotransferase
Probab=41.51 E-value=63 Score=41.42 Aligned_cols=85 Identities=7% Similarity=0.038 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc--cCCCCc------C----CCCCCCCCccccCCCCCCcccccCCCCH--HHHHHHH
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVFT--RTADGA------L----QGIDDSSYYYAHRGEGIETTNVLNCNYP--TVQQMIL 524 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~N--H~~~~~------~----~~~d~~~yY~~~~~~~~~~~~dln~~~p--~Vr~~ii 524 (878)
.+++++-+.||++||+++.|+-+- +-+.+. | .--.+|++|...+. .|+ .|.+|+..- .--+..+
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~GQ-~WG-~P~ynw~~l~~~gy~ww~ 538 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQ-NWG-FPTYNWEEMSKDNYAWWR 538 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCcccc-cCC-CCCcCHHHHHhcCcHHHH
Confidence 567788899999999999999764 222221 1 01123566654431 122 144444311 0112334
Q ss_pred HHHHHHHHhcCccEEEEccCccc
Q 047308 525 NSLRHWVTEFHIDGFCFINASSL 547 (878)
Q Consensus 525 d~l~~Wl~e~gVDGFRfD~a~~l 547 (878)
+-+++-++ ..|++|+|.+-.+
T Consensus 539 ~Rlr~~~~--~~d~lRIDH~~Gf 559 (909)
T PLN02950 539 ARLTQMAK--YFTAYRIDHILGF 559 (909)
T ss_pred HHHHHHHH--hCCEEEEecchhh
Confidence 44444443 6789999965543
No 176
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=41.39 E-value=5.5e+02 Score=28.74 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=75.7
Q ss_pred cEEEEEecccccCCCC--CCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 377 LVVYRLNVMRFSEHKS--SKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~--s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
-.||=++|..=.+... +..|+-.+=+...+.+.+..+.++|+++|-|-||.+....+. .. ..-+.++
T Consensus 25 dlI~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~-~g-s~A~~~~--------- 93 (320)
T cd04823 25 DLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSE-DG-SEAYNPD--------- 93 (320)
T ss_pred HceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCc-cc-ccccCCC---------
Confidence 3678887765322221 344555556789999999999999999999999953221110 00 0001111
Q ss_pred cchHHHHHHHHHHHHH--CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHA--NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT 532 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~--~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~ 532 (878)
.=+.+-|+++++ -.|-||-||-+.+....+ .++-..+=...|.+..+.+.+...-..
T Consensus 94 ----g~v~~air~iK~~~p~l~vi~DVclc~YT~hG----------------HcGil~~~~idND~Tl~~L~~~Avs~A- 152 (320)
T cd04823 94 ----NLVCRAIRAIKEAFPELGIITDVALDPYTSHG----------------HDGIVRDGGILNDETVEVLCKQALVQA- 152 (320)
T ss_pred ----ChHHHHHHHHHHhCCCcEEEEeeeccCCCCCC----------------cceeccCCcCcCHHHHHHHHHHHHHHH-
Confidence 113344444444 489999999987643311 011111111456677778887777777
Q ss_pred hcCccEE
Q 047308 533 EFHIDGF 539 (878)
Q Consensus 533 e~gVDGF 539 (878)
+-|.|-.
T Consensus 153 ~AGADiV 159 (320)
T cd04823 153 EAGADIV 159 (320)
T ss_pred HhCCCEE
Confidence 6777743
No 177
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=41.38 E-value=79 Score=37.62 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCC-EEEEEEecccCC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGI-EVLLEVVFTRTA 485 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI-~VILDvV~NH~~ 485 (878)
.++|..||+.||+.|.|.| ..+.... .-.+ .+-. +.+++.+.++.|++.|+ .|-+|+.+...+
T Consensus 269 ~e~L~~Lk~~Gv~RISIGv-QS~~d~v-------Lk~i-gR~h-------t~e~v~~ai~~ar~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINP-QTMNDET-------LKAI-GRHH-------TVEDIIEKFHLAREMGFDNINMDLIIGLPG 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcC-CcCCHHH-------HHHh-CCCC-------CHHHHHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 4679999999999999755 3322110 0011 1212 45899999999999999 788999998876
Q ss_pred CC
Q 047308 486 DG 487 (878)
Q Consensus 486 ~~ 487 (878)
..
T Consensus 333 Et 334 (488)
T PRK08207 333 EG 334 (488)
T ss_pred CC
Confidence 64
No 178
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=41.16 E-value=88 Score=36.80 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCC-EEEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGI-EVLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI-~VILDvV~NH~~~ 486 (878)
++|..|+++|++.|.|. |..+.... .-.+ .+.. +.++..+.|+.+++.|| .|-+|+.++..+.
T Consensus 152 e~l~~l~~aG~~risiG-vqS~~~~~-------L~~l-~r~~-------~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 152 EMLDALRELGFNRLSLG-VQDFDPEV-------QKAV-NRIQ-------PFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCCHHH-------HHHh-CCCC-------CHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 67999999999999973 33322110 0011 1111 34899999999999999 7999999975431
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
..+.+.+.+++.+ +.++|.+.+
T Consensus 216 --------------------------------t~e~~~~~l~~~~-~l~~~~i~~ 237 (453)
T PRK09249 216 --------------------------------TPESFARTLEKVL-ELRPDRLAV 237 (453)
T ss_pred --------------------------------CHHHHHHHHHHHH-hcCCCEEEE
Confidence 2345666666666 789998877
No 179
>PF14400 Transglut_i_TM: Inactive transglutaminase fused to 7 transmembrane helices
Probab=40.54 E-value=95 Score=31.42 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=44.2
Q ss_pred eceeeCCCC---eEEEEEeecCCCCCeEEEEeeccccCCCCCcchhhccccCcccccccCCCCCCCCCceEEecCCeEEE
Q 047308 177 TPFTPTSFD---TFALELGFEAKQTPFYLSFLLKSPLRDGSGDFEIRNHLSAKFCVPVGLNAGVPSPMGLSFSTDGSLNF 253 (878)
Q Consensus 177 ~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~~~g~v~F 253 (878)
.|+.+++.. .++.+++|++...|-++++.+....+ |-.+.. ++|. +.|| |.++..++.-+.
T Consensus 8 vP~~Pge~~~vW~VEArV~F~a~g~pvkvsl~lP~~~p----gf~il~---E~~~-----SpGY----Gls~~~~~~~Rr 71 (165)
T PF14400_consen 8 VPLLPGEQRQVWNVEARVEFDATGGPVKVSLALPDTQP----GFTILD---ENFA-----SPGY----GLSIVDDDGNRR 71 (165)
T ss_pred CCCCCCCceeEEEEEEEEEEecCCCCEEEEEcCCCCCC----CeEEEc---cccc-----cCCC----CeEEEecCCCcE
Confidence 566665443 45669999999999999999966543 555543 3453 5665 666665544567
Q ss_pred EEEcC
Q 047308 254 AIFSR 258 (878)
Q Consensus 254 ~vwaP 258 (878)
+.|+-
T Consensus 72 A~WS~ 76 (165)
T PF14400_consen 72 AEWSI 76 (165)
T ss_pred EEEec
Confidence 77754
No 180
>PRK05660 HemN family oxidoreductase; Provisional
Probab=39.59 E-value=94 Score=35.62 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEE-EEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEV-LLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~V-ILDvV~NH~~~ 486 (878)
++|..||++|||.|.|.. ..+... -+-.+. +-. +.++..+-|+.+++.|+.. -+|+.++..+
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~~~~-------~L~~l~-r~~-------~~~~~~~ai~~~~~~G~~~v~~dli~Glpg- 170 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSFSEE-------KLKRLG-RIH-------GPDEAKRAAKLAQGLGLRSFNLDLMHGLPD- 170 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcCCHH-------HHHHhC-CCC-------CHHHHHHHHHHHHHcCCCeEEEEeecCCCC-
Confidence 689999999999999843 222211 011111 111 3488889999999999975 4999997543
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+..+.+.+.++..+ +.++|.+.+
T Consensus 171 -------------------------------qt~~~~~~~l~~~~-~l~p~~is~ 193 (378)
T PRK05660 171 -------------------------------QSLEEALDDLRQAI-ALNPPHLSW 193 (378)
T ss_pred -------------------------------CCHHHHHHHHHHHH-hcCCCeEEe
Confidence 12455667777777 788888776
No 181
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=39.58 E-value=1.4e+02 Score=27.11 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=38.4
Q ss_pred CcEEEEEEecccccccccccCCCCCCeEEEEEeCCCC---cEEEEcCC--CCCCCeEEEEccCCCCCCCCccCCCCceee
Q 047308 779 CKFLAMRLKVDKAESQLSSESSQTKGDLYIACNAADH---SESVVLPP--PPEGMTWHHLVDTALPFPGFFSTEGKPVLE 853 (878)
Q Consensus 779 ~~vlaf~R~~~~~~~~~~~~~~~~~~~llVv~N~s~~---~~~~~Lp~--~~~g~~W~~l~dt~~~~~~~~~~~~~~~~~ 853 (878)
++.+||+|..+ ..+-+.|+-|.+.. ..++.++. ...+..+.+++.-... +.
T Consensus 6 ~~~~a~rKG~~------------g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~------------tv 61 (91)
T PF09260_consen 6 DSTIAFRKGPD------------GSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSY------------TV 61 (91)
T ss_dssp TTEEEEEESST------------TT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEE------------E-
T ss_pred CcEEEEEeCCC------------CCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEE------------EE
Confidence 47899998653 34556666666652 66777772 2356788888765431 11
Q ss_pred ecCceEEEEEcCcEEEEEEEc
Q 047308 854 QMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 854 ~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
...|..++.|..+--.||...
T Consensus 62 ~~~G~l~v~m~~G~P~Vl~P~ 82 (91)
T PF09260_consen 62 DSNGTLTVPMSNGEPRVLYPA 82 (91)
T ss_dssp -TTS-EEEEESTT--EEEEEC
T ss_pred CCCCEEEEEEcCCceEEEEEH
Confidence 244666777777776777653
No 182
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.55 E-value=69 Score=36.56 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~~ 486 (878)
++|..|+++|+|.|.| +|..+.... +-.+ .+-. +.++..+.|+.+++.|+. |-+|+.++..+.
T Consensus 101 e~l~~l~~~G~~rvsi-GvqS~~~~~-------l~~l-~r~~-------~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 101 EKLQVLKDSGVNRISL-GVQTFNDEL-------LKKI-GRTH-------NEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHH-------HHHc-CCCC-------CHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 5799999999999987 333332210 0011 1111 348999999999999998 678999975431
Q ss_pred CcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 487 GALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 487 ~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
..+-+.+.+++.+ +.++|.+.+
T Consensus 165 --------------------------------t~~~~~~~l~~~~-~l~~~~i~~ 186 (377)
T PRK08599 165 --------------------------------TIEDFKESLAKAL-ALDIPHYSA 186 (377)
T ss_pred --------------------------------CHHHHHHHHHHHH-ccCCCEEee
Confidence 2344556666655 788887755
No 183
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=39.05 E-value=2e+02 Score=31.89 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=55.0
Q ss_pred HHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCcCC
Q 047308 411 HHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQ 490 (878)
Q Consensus 411 dyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~ 490 (878)
.+.++-|+++|-|-=+..... -.+ .+ ...++. .....++.-|++|+++|++||+=+ . +..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~----~~~-~w---~g~~~~-----~~~~~~~~~i~~lk~~G~kViiS~--G-----G~~ 78 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGG----CKP-AW---GGSYPL-----DQGGWIKSDIAALRAAGGDVIVSF--G-----GAS 78 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCC----Ccc-cC---CCCCCc-----ccchhHHHHHHHHHHcCCeEEEEe--c-----CCC
Confidence 577789999999853322110 000 00 000110 012678889999999999998821 1 110
Q ss_pred CCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 491 GIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 491 ~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
+ .+ +-. ...-++.+++++.-.++.|++||+-||
T Consensus 79 g----~~--------------~~~-~~~~~~~~~~a~~~~i~~y~~dgiDfD 111 (294)
T cd06543 79 G----TP--------------LAT-SCTSADQLAAAYQKVIDAYGLTHLDFD 111 (294)
T ss_pred C----Cc--------------ccc-CcccHHHHHHHHHHHHHHhCCCeEEEe
Confidence 0 00 100 223467777888888899999999998
No 184
>PRK01060 endonuclease IV; Provisional
Probab=38.06 E-value=1.6e+02 Score=31.68 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEE
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEV 475 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~V 475 (878)
.++.+-|+.++++|+++|+|.+-- |.. +. .+.+ + .+++++|-+.+.+.||++
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~----------p~~-~~-~~~~-~-------~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGN----------PQQ-WK-RKPL-E-------ELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC----------CCC-Cc-CCCC-C-------HHHHHHHHHHHHHcCCCC
Confidence 337778999999999999995421 111 11 1111 2 267888888899999985
No 185
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.49 E-value=1e+02 Score=36.21 Aligned_cols=87 Identities=11% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTA 485 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~ 485 (878)
.+.|..||++|++.|.|.. ..+.... . -.+ .+-. +.++..+.|+.+++.|+. |-+|+.++..+
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~~~~~-----l--~~l-~r~~-------~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDFNKEV-----Q--QAV-NRIQ-------PEEMIFELMNHAREAGFTSINIDLIYGLPK 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHHH-----H--HHh-CCCC-------CHHHHHHHHHHHHhcCCCcEEEeEEeeCCC
Confidence 3579999999999999832 2222110 0 011 1111 348899999999999996 77999987543
Q ss_pred CCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 486 DGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 486 ~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
. ..+.+.+.+++-+ +.++|.+.+-
T Consensus 215 q--------------------------------t~e~~~~tl~~~~-~l~~~~is~y 238 (455)
T TIGR00538 215 Q--------------------------------TKESFAKTLEKVA-ELNPDRLAVF 238 (455)
T ss_pred C--------------------------------CHHHHHHHHHHHH-hcCCCEEEEe
Confidence 1 2344555666555 7899988763
No 186
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.36 E-value=2e+02 Score=34.01 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|.-..|-+.-+|+||+++--+.=-+.. +.|. |...-....++=.++||++|.++||+.|+-
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsR--------------I~P~-g~~~~N~~gl~~Y~~lid~l~~~GI~P~VT-- 112 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSR--------------IFPT-GYGEVNEKGVEFYHKLFAECHKRHVEPFVT-- 112 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhh--------------ccCC-CCCCcCHHHHHHHHHHHHHHHHcCCEEEEe--
Confidence 45788888999999999999886432221 1110 100012235788899999999999999974
Q ss_pred cccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 481 FTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 481 ~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
+.|.. -|.+.... + .+.++++.+++.+-++.-+++|| |
T Consensus 113 L~H~d--------lP~~L~~~--G--------GW~n~~~v~~F~~YA~~~f~~fg-d 150 (467)
T TIGR01233 113 LHHFD--------TPEALHSN--G--------DFLNRENIEHFIDYAAFCFEEFP-E 150 (467)
T ss_pred ccCCC--------CcHHHHHc--C--------CCCCHHHHHHHHHHHHHHHHHhC-C
Confidence 45642 23333211 1 24567888888888888888887 5
No 187
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=35.57 E-value=95 Score=35.60 Aligned_cols=85 Identities=9% Similarity=0.149 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTADG 487 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~ 487 (878)
++|..|+++|||.|.|- |..++..- .-.+ .+-- +.++..+.|+.+++.++.|-+|+.++--+.
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d~v-------L~~l-~R~~-------~~~~~~~ai~~~~~~~~~v~~dli~GlPgq- 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALNDAD-------LRFL-GRLH-------SVAEALAAIDLAREIFPRVSFDLIYARPGQ- 167 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHH-------HHHc-CCCC-------CHHHHHHHHHHHHHhCccEEEEeecCCCCC-
Confidence 68999999999999973 33332210 0011 1111 348889999999999999999999974321
Q ss_pred cCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 488 ALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 488 ~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
..+-+.+.+...+ +.++|.+.+
T Consensus 168 -------------------------------t~~~~~~~l~~~~-~l~p~~is~ 189 (380)
T PRK09057 168 -------------------------------TLAAWRAELKEAL-SLAADHLSL 189 (380)
T ss_pred -------------------------------CHHHHHHHHHHHH-hcCCCeEEe
Confidence 2334455677777 778987776
No 188
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=35.43 E-value=92 Score=36.65 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTA 485 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~ 485 (878)
.++|..|+++|||.|.|.. ..+... -.-.+ .+.. +.++..+.|+.+++.|+. |-+|+.++..+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~~~~-------vl~~l-~R~~-------~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDFDPQ-------VQKAI-NRIQ-------PEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCHH-------HHHHh-CCCC-------CHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 3679999999999999843 322211 00111 1112 348899999999999997 88999997532
Q ss_pred CCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 486 DGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 486 ~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
+..+.+.+.+++-+ ++++|.+.+
T Consensus 216 --------------------------------qt~e~~~~tl~~~~-~l~p~~i~~ 238 (453)
T PRK13347 216 --------------------------------QTVESFRETLDKVI-ALSPDRIAV 238 (453)
T ss_pred --------------------------------CCHHHHHHHHHHHH-hcCCCEEEE
Confidence 12445666666666 889998876
No 189
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=34.80 E-value=61 Score=34.47 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcC-CCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 406 VTEKVHHLKDLG-VNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 406 i~~kLdyLk~LG-vt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
+.+-++.|++++ +..|+|+|.+..+..+ |. ++++.|--.+-+..+.++++++.+.+++.|+.|.
T Consensus 181 i~~l~~~l~~l~~~~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 181 AHRLGEFIKDMGNIEKIELLPYHELGKHK--WE-----AMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHhcCCcceEEEecCCccchhH--HH-----HcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 333445556664 7899999988765432 21 1111111100011146899999999999999874
No 190
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=33.60 E-value=5.9e+02 Score=28.58 Aligned_cols=129 Identities=10% Similarity=0.154 Sum_probs=73.0
Q ss_pred cEEEEEecccccCCCC--CCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCC
Q 047308 377 LVVYRLNVMRFSEHKS--SKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~--s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~ 454 (878)
--||=++|..=.+... +..|+-.+=+...+.+.+..+.++||++|-|-|+-+..... | ..-+.++
T Consensus 30 dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~-g---s~A~~~~--------- 96 (323)
T PRK09283 30 DLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPELKDED-G---SEAYNPD--------- 96 (323)
T ss_pred HceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcc-c---ccccCCC---------
Confidence 3577777765222111 33455555678999999999999999999999992211111 0 0001111
Q ss_pred cchHHHHHHHHHHHHH--CCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHA--NGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT 532 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~--~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~ 532 (878)
+- +.+-|+++++ -.|-||-||-+......+= ++-..+=.-.|.+..+.+.+...-..
T Consensus 97 -g~---v~rair~iK~~~p~l~vi~DVcLc~YT~hGH----------------cGil~~g~idND~Tl~~L~~~Al~~A- 155 (323)
T PRK09283 97 -GL---VQRAIRAIKKAFPELGVITDVCLDEYTSHGH----------------CGILEDGYVDNDETLELLAKQALSQA- 155 (323)
T ss_pred -CH---HHHHHHHHHHhCCCcEEEEeeeccCCCCCCc----------------eecccCCcCcCHHHHHHHHHHHHHHH-
Confidence 11 3333333333 5899999999875432110 11111111236677777777776666
Q ss_pred hcCccEE
Q 047308 533 EFHIDGF 539 (878)
Q Consensus 533 e~gVDGF 539 (878)
+-|.|-.
T Consensus 156 ~AGaDiV 162 (323)
T PRK09283 156 EAGADIV 162 (323)
T ss_pred HhCCCEE
Confidence 6788743
No 191
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.16 E-value=1.7e+02 Score=32.47 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCc
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHI 536 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gV 536 (878)
+.+++.+.|+.++++||.|..|+.++--+ +..+.+++.+++-. +.++
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPg--------------------------------et~e~~~~t~~~l~-~l~~ 207 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPG--------------------------------EDREEMMETAKIVS-LLDV 207 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCC--------------------------------CCHHHHHHHHHHHH-hcCC
Confidence 45899999999999999999999987422 12355666666554 8999
Q ss_pred cEEEE
Q 047308 537 DGFCF 541 (878)
Q Consensus 537 DGFRf 541 (878)
|++.+
T Consensus 208 d~i~i 212 (302)
T TIGR01212 208 DGIKI 212 (302)
T ss_pred CEEEE
Confidence 99887
No 192
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=33.11 E-value=1.4e+02 Score=28.01 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
=..+..++..|++-|+++|.|..-+......+ .-| .+++++++|++.= ||.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~-------~CP------------~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG-------PCP------------HIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC-------CCC------------CHHHHHHHHHHHh--CCCEee
Confidence 56788889999999999999988876433110 011 2366666666443 998875
No 193
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=33.00 E-value=2.4e+02 Score=33.43 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
...|.-..|-+.-+|+||+++-=+.=-+..-... |. |. -....++=.++||++|.++||+-|+-+
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~-G~------------g~--vN~~gl~~Y~~lid~l~~~GI~P~VTL 114 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPD-GY------------GE--VNPKGVEYYHRLFAECHKRHVEPFVTL 114 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcC-CC------------CC--cCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3457888889999999999998764332211100 10 10 112357889999999999999999865
Q ss_pred ecccC
Q 047308 480 VFTRT 484 (878)
Q Consensus 480 V~NH~ 484 (878)
. |.
T Consensus 115 ~--H~ 117 (469)
T PRK13511 115 H--HF 117 (469)
T ss_pred c--CC
Confidence 4 54
No 194
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=32.86 E-value=1.2e+02 Score=34.68 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRT 484 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~ 484 (878)
++|..|+++|++.|.|. |..+.... .-.+ .+-. +.++..+-|+.+++.||. |-+|+.++..
T Consensus 100 e~l~~l~~~G~~rvsiG-vqS~~d~~-------L~~l-~R~~-------~~~~~~~ai~~l~~~g~~~v~~dli~GlP 161 (374)
T PRK05799 100 EKLKILKSMGVNRLSIG-LQAWQNSL-------LKYL-GRIH-------TFEEFLENYKLARKLGFNNINVDLMFGLP 161 (374)
T ss_pred HHHHHHHHcCCCEEEEE-CccCCHHH-------HHHc-CCCC-------CHHHHHHHHHHHHHcCCCcEEEEeecCCC
Confidence 57999999999998873 33332210 0011 1111 348899999999999997 7799999743
No 195
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=32.82 E-value=2.6e+02 Score=30.97 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCC--CCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKG--PYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~--gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
..+.+.+.-||+-|+|++-+ +.....| -|...+- +....++ .....|++.+|++|+++||-+|.-+|.
T Consensus 77 k~~de~fk~ikdn~~Na~Vi----D~Kdd~G~lty~s~d~--~~~~~~s----v~~f~Di~~~iKkaKe~giY~IARiVv 146 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVI----DVKDDYGELTYPSSDE--INKYTKS----VNKFKDIEPVIKKAKENGIYAIARIVV 146 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEE----EecCCCccEeccccch--hhhhhhc----cccccccHHHHHHHHhcCeEEEEEEEE
Confidence 35667789999999999875 5433322 1333221 1111221 113578999999999999999988774
Q ss_pred -ccCCCCcCCCCCCCCCccccCC------CCCCccc--------------ccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 047308 482 -TRTADGALQGIDDSSYYYAHRG------EGIETTN--------------VLNCNYPTVQQMILNSLRHWVTEFHIDGFC 540 (878)
Q Consensus 482 -NH~~~~~~~~~d~~~yY~~~~~------~~~~~~~--------------dln~~~p~Vr~~iid~l~~Wl~e~gVDGFR 540 (878)
--+ .+|.+++. .+-+|.. =.+--++.+.+|=+..++--+ +||+|-..
T Consensus 147 FKD~-----------~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQ 214 (400)
T COG1306 147 FKDT-----------ILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQ 214 (400)
T ss_pred eeee-----------eEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHH-HcCcccee
Confidence 211 12222110 0001100 022336788899888888887 89999999
Q ss_pred EccCc
Q 047308 541 FINAS 545 (878)
Q Consensus 541 fD~a~ 545 (878)
||-+.
T Consensus 215 FDYIR 219 (400)
T COG1306 215 FDYIR 219 (400)
T ss_pred eeEEE
Confidence 98443
No 196
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.55 E-value=3.5e+02 Score=28.98 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccC
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~ 484 (878)
++.+.++++.++|++.|+|....... | ..+ ++ +.+++++|-+.+.+.||+|.+ |.
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~-----~-----~~~--~~--------~~~~~~~l~~~~~~~gl~ls~-----h~ 65 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRS-----W-----KGV--RL--------SEETAEKFKEALKENNIDVSV-----HA 65 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCC-----C-----CCC--CC--------CHHHHHHHHHHHHHcCCCEEE-----EC
Confidence 36678999999999999995432210 1 111 11 126677777778899998654 43
Q ss_pred CCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHH---HhcCccEEEE
Q 047308 485 ADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWV---TEFHIDGFCF 541 (878)
Q Consensus 485 ~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl---~e~gVDGFRf 541 (878)
.|+ ..+...++.+|+.-++.++.++ +++|++...+
T Consensus 66 -----------p~~-----------~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 66 -----------PYL-----------INLASPDKEKVEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred -----------Cce-----------ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 121 0112234567776555544444 4678887665
No 197
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.81 E-value=1.9e+02 Score=31.59 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTR 483 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH 483 (878)
.+.+..||+.|++.|.+. ++.... -|. .+.+. .+.++..+.++.+|+.||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~~~~--~~~-----~i~~~--------~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDTSQE--FYS-----NIIST--------HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccCCHH--HHh-----hccCC--------CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 467899999999999986 231110 011 11111 1458888999999999999988888764
No 198
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=31.32 E-value=40 Score=37.21 Aligned_cols=24 Identities=4% Similarity=0.318 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV 480 (878)
+++|++++.+-||++||.|.||--
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 469999999999999999999975
No 199
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=31.13 E-value=86 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCeEEEccCc
Q 047308 406 VTEKVHHLKDLGVNAILLEPIL 427 (878)
Q Consensus 406 i~~kLdyLk~LGvt~I~L~PI~ 427 (878)
+...+..||++|.+.|=++|+-
T Consensus 137 vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC
Confidence 4455899999999999999973
No 200
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=30.16 E-value=46 Score=39.64 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCC--c-----CCCC-----CCCCCccccCCCCCCcccccCCCCHHH--HHHH
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADG--A-----LQGI-----DDSSYYYAHRGEGIETTNVLNCNYPTV--QQMI 523 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~--~-----~~~~-----d~~~yY~~~~~~~~~~~~dln~~~p~V--r~~i 523 (878)
-++++++-+.|+++||++|.|+-+-=...+ . +-.. .+|++|...+. .|+ .|-+|+..-.- -+..
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~~GQ-~WG-~P~y~w~~l~~~gy~ww 268 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSPTGQ-NWG-NPPYNWDALKEDGYRWW 268 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSSS-E-EEE-EE-B-HHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCcccc-cCC-CCCcCHHHHHHcCCHHH
Confidence 367888888999999999999975422221 0 1111 13566654321 111 13343321000 1233
Q ss_pred HHHHHHHHHhcCccEEEEccCccccc
Q 047308 524 LNSLRHWVTEFHIDGFCFINASSLLR 549 (878)
Q Consensus 524 id~l~~Wl~e~gVDGFRfD~a~~l~~ 549 (878)
++-+++=+ -.+|++|+|.+-.+.+
T Consensus 269 ~~rl~~~~--~~~d~lRIDH~~Gf~r 292 (496)
T PF02446_consen 269 IDRLRANM--RLFDALRIDHFRGFFR 292 (496)
T ss_dssp HHHHHHHH--CC-SEEEEETGGGGTE
T ss_pred HHHHHHHH--HhCCchHHHHHHHHHh
Confidence 44444433 4789999997665543
No 201
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=29.82 E-value=80 Score=35.25 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCC-eEEEccCcccCCCCCCCCCCCC-CCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccC
Q 047308 407 TEKVHHLKDLGVN-AILLEPILSFDEQKGPYFPRHF-FSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484 (878)
Q Consensus 407 ~~kLdyLk~LGvt-~I~L~PI~~~~~~~~gY~~~~y-fa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~ 484 (878)
.++|..|++.|++ .|.|-+ ++.... -. ..+...+ +.+++.+.++.+|++||.|.+++.+..-
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~d~------~L~~~inKg~--------t~~~~~~ai~~~~~~Gi~v~~~~i~G~P 180 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETANDR------IREKSINKGS--------TFEDFIRAAELARKYGAGVKAYLLFKPP 180 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCCHH------HHHHhhCCCC--------CHHHHHHHHHHHHHcCCcEEEEEEecCC
Confidence 4678899999998 688743 221110 00 0112222 3589999999999999999999998632
Q ss_pred CCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 485 ADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 485 ~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
.. ...+..+.+++.+++-. .++ |.+.+
T Consensus 181 ~~----------------------------se~ea~ed~~~ti~~~~-~l~-~~vs~ 207 (313)
T TIGR01210 181 FL----------------------------SEKEAIADMISSIRKCI-PVT-DTVSI 207 (313)
T ss_pred CC----------------------------ChhhhHHHHHHHHHHHH-hcC-CcEEE
Confidence 10 00135566777777665 677 77766
No 202
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=29.30 E-value=71 Score=36.93 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTA 485 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~ 485 (878)
++|..||++|||.|.|- |..++... .-.+ .+-. +.++..+.++.+++.||. |-+|+.++.-+
T Consensus 116 e~l~~l~~~GvnrislG-vQS~~d~~-------L~~l-~R~~-------~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg 178 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLG-VQAFQDEL-------LALC-GRSH-------RVKDIFAAVDLIHQAGIENFSLDLISGLPH 178 (400)
T ss_pred HHHHHHHHCCCCEEEEE-cccCCHHH-------HHHh-CCCC-------CHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 57999999999999973 34433210 0011 1111 348999999999999999 78999998654
No 203
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=28.74 E-value=3.8e+02 Score=33.27 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=77.0
Q ss_pred EEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCC---CCCCCCCCCCccCCCCCCCCC
Q 047308 378 VVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQK---GPYFPRHFFSPTKLHGPSRGS 454 (878)
Q Consensus 378 VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~---~gY~~~~yfa~d~~yGt~~~~ 454 (878)
.+-+|..+.-.+.++. -.-+.+-.-|+.|+++|||+|+|....+.+++. .-|.|..+ .--
T Consensus 315 r~~~vdld~vyd~dp~-------q~~~nl~~l~~ri~~~~~~~VyLqafadp~gdg~~~~lYFpnr~------lPm---- 377 (672)
T PRK14581 315 RVAHVDLDYLYDPDPA-------QEKENLDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQVYFPNRW------IPM---- 377 (672)
T ss_pred eEEEeccccccCCCHH-------HHhhhHHHHHHHHHhcCCCEEEEEeeeCCCCCCceeeEEecCCc------ccH----
Confidence 3555555555553321 112334444789999999999998765543321 01333322 211
Q ss_pred cchHHHHHHHHHHHHHC-CCEEEEEEecccCC-CCcCCCCCCCCCccccCC---CCCCcccccCCCCHHHHHHHHHHHHH
Q 047308 455 ISAINSMKEMVKKLHAN-GIEVLLEVVFTRTA-DGALQGIDDSSYYYAHRG---EGIETTNVLNCNYPTVQQMILNSLRH 529 (878)
Q Consensus 455 ~~~i~elk~LV~~aH~~-GI~VILDvV~NH~~-~~~~~~~d~~~yY~~~~~---~~~~~~~dln~~~p~Vr~~iid~l~~ 529 (878)
+.+=|-+..=+++.| |++|.-=+-.=-.. ...+.. ...+..++. .....-..|..-+|++|+.|.+...-
T Consensus 378 --raDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~~~~---~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~D 452 (672)
T PRK14581 378 --RQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPSLPR---ITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRD 452 (672)
T ss_pred --HHhhhhHHHHHHHhhhCceEEEeeehhhccCCcccch---hhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHH
Confidence 235566665667755 99997544322110 000000 000000000 00001235666789999999999999
Q ss_pred HHHhcCccEEEEc
Q 047308 530 WVTEFHIDGFCFI 542 (878)
Q Consensus 530 Wl~e~gVDGFRfD 542 (878)
....-.|||+=|.
T Consensus 453 La~~~~~~Gilfh 465 (672)
T PRK14581 453 MAYSAPIDGIIYH 465 (672)
T ss_pred HHhcCCCCeEEec
Confidence 9865699999984
No 204
>PLN02808 alpha-galactosidase
Probab=28.44 E-value=2e+02 Score=33.14 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCCcEEEEcCC----CCCC--CeEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEc
Q 047308 803 KGDLYIACNAADHSESVVLPP----PPEG--MTWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEAS 874 (878)
Q Consensus 803 ~~~llVv~N~s~~~~~~~Lp~----~~~g--~~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~ 874 (878)
+...++++|.+..++++.++. .+.+ .+.++|...... + ...+..+++|||+++++|+..
T Consensus 320 g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~--------g-----~~~~~~~~~v~pHg~~~~rlt 384 (386)
T PLN02808 320 KRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQ--------S-----SVKGQLSALVESHACKMYVLT 384 (386)
T ss_pred CCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCcc--------C-----cccceEEEEECCceEEEEEEe
Confidence 567899999999988877542 1111 133444432210 0 123446789999999999875
No 205
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.36 E-value=5.1e+02 Score=27.88 Aligned_cols=92 Identities=11% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHC-CCEEEEEEecc
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHAN-GIEVLLEVVFT 482 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~-GI~VILDvV~N 482 (878)
..+.+.++.++++|++.|+|..-.. .++ . .+.. + .+++++|.+.+.++ |+.+.+-.-
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~-----~~~-----~--~~~~-~-------~~~~~~l~~~~~~~~~~~i~~~~~-- 67 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNP-----RSW-----L--SRPL-K-------KERAEKFKAIAEEGPSICLSVHAP-- 67 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCC-----Ccc-----C--CCCC-C-------HHHHHHHHHHHHHcCCCcEEEEcC--
Confidence 5677889999999999999964111 001 1 1111 1 26777777777777 777664211
Q ss_pred cCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHH---hcCccEEEEc
Q 047308 483 RTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVT---EFHIDGFCFI 542 (878)
Q Consensus 483 H~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~---e~gVDGFRfD 542 (878)
|+ ..+...++++|+.-++.++.+++ ++|++-.++-
T Consensus 68 --------------~~-----------~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 68 --------------YL-----------INLASPDKEKREKSIERLKDEIERCEELGIRLLVFH 105 (279)
T ss_pred --------------ce-----------eccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 11 00112245567766666666553 6888877763
No 206
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=28.24 E-value=84 Score=36.23 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
++|..||++|||.|.|- |..+++.. ..--.+.. +.++..+.|+.+++.++.|-+|++++.-+.
T Consensus 112 e~l~~l~~~GvnRiSiG-vQS~~d~~--------L~~lgR~h-------~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 112 EKFKAFKLAGINRVSIG-VQSLKEDD--------LKKLGRTH-------DCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHCCCCEEEEE-CCcCCHHH--------HHHcCCCC-------CHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 68999999999999983 33332210 01111222 348888889999999999999999987653
No 207
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.06 E-value=88 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCeEEEccCcccCCCC
Q 047308 406 VTEKVHHLKDLGVNAILLEPILSFDEQK 433 (878)
Q Consensus 406 i~~kLdyLk~LGvt~I~L~PI~~~~~~~ 433 (878)
+.+-++.|++.|++.|.|.|+|-....+
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G~H 71 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAGDH 71 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheeccc
Confidence 4555677899999999999999876654
No 208
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.50 E-value=1.8e+02 Score=27.10 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=34.2
Q ss_pred HHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 411 HHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 411 dyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
..+..+|+..+.+.+.......-......|..=.-+.-| .-.++.++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG-------~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSG-------ETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCC-------CCHHHHHHHHHHHHCCCeEEE
Confidence 445678999988755322111000011222111112222 238999999999999999986
No 209
>PLN02692 alpha-galactosidase
Probab=26.70 E-value=4.6e+02 Score=30.54 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCcEEEEcCC----CCCCC--eEEEEccCCCCCCCCccCCCCceeeecCceEEEEEcCcEEEEEEEcc
Q 047308 803 KGDLYIACNAADHSESVVLPP----PPEGM--TWHHLVDTALPFPGFFSTEGKPVLEQMAGLYTYEMKPYSCTLFEASN 875 (878)
Q Consensus 803 ~~~llVv~N~s~~~~~~~Lp~----~~~g~--~W~~l~dt~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~S~~Vl~~~~ 875 (878)
+...+++||.++..+++.++. .+.+. ..++|...... +. ...+..+++|||+++++|+...
T Consensus 344 g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~--------g~----~~~~~~~~~v~~Hg~~l~rl~~ 410 (412)
T PLN02692 344 YRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKTL--------KQ----HFVGNLTATVDSHACKMYILKP 410 (412)
T ss_pred CCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCcc--------Cc----cccceEEEEECCceEEEEEEec
Confidence 456888999999988888652 22211 34444432210 00 1234567899999999998764
No 210
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=26.44 E-value=3.5e+02 Score=32.14 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCC-CCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSR-GSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~-~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
...|.-..|-+.-+|+||+|+-=+.=-+. .+-|. |..+ -....++=.++||++|.++||+.|+-
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWs--------------RI~P~-G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VT 127 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWT--------------RIFPQ-GDELEPNEEGLQFYDDLFDECLKQGIEPVVT 127 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchh--------------hcCcC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34588888999999999999987632222 11111 1100 12235788899999999999999975
Q ss_pred EecccC
Q 047308 479 VVFTRT 484 (878)
Q Consensus 479 vV~NH~ 484 (878)
+ .|.
T Consensus 128 L--~H~ 131 (476)
T PRK09589 128 L--SHF 131 (476)
T ss_pred e--cCC
Confidence 4 564
No 211
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.36 E-value=92 Score=35.57 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCE-EEEEEecccCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIE-VLLEVVFTRTA 485 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~-VILDvV~NH~~ 485 (878)
++|+.|+++|||.|.| .|..+.... .-.+...+ +.++..+-|+.+++.|+. |-+|+.++.-+
T Consensus 104 ~~l~~l~~~G~nrisl-GvQS~~~~~-------L~~l~R~~--------~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg 166 (370)
T PRK06294 104 SYIRALALTGINRISI-GVQTFDDPL-------LKLLGRTH--------SSSKAIDAVQECSEHGFSNLSIDLIYGLPT 166 (370)
T ss_pred HHHHHHHHCCCCEEEE-ccccCCHHH-------HHHcCCCC--------CHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 5799999999999987 344433210 00111111 247888999999999996 88999998544
No 212
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=25.88 E-value=2e+02 Score=33.86 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
-|.-..+-|+.+|+||+|+.-+.=-+..- -|++.-|.. ....++=.++||++|.++||+.|+-+-
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri------------~P~g~~g~~--n~~~~~~Y~~~i~~l~~~gi~P~vtL~- 120 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRI------------FPDGFEGKV--NEEGLDFYRDLIDELLENGIEPIVTLY- 120 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHH------------STTSSSSSS---HHHHHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred chhhhhHHHHHHHhhccceeeeecchhhe------------eeccccccc--CHhHhhhhHHHHHHHHhhccceeeeee-
Confidence 47778888999999999998875433210 111111211 123567789999999999999998654
Q ss_pred ccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcC--ccEEE
Q 047308 482 TRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFH--IDGFC 540 (878)
Q Consensus 482 NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~g--VDGFR 540 (878)
|. +-|.|.... + .+.++++.+.+.+-+++-+++|| |+=|-
T Consensus 121 -H~--------~~P~~l~~~--g--------gw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~ 162 (455)
T PF00232_consen 121 -HF--------DLPLWLEDY--G--------GWLNRETVDWFARYAEFVFERFGDRVKYWI 162 (455)
T ss_dssp -SS----------BHHHHHH--T--------GGGSTHHHHHHHHHHHHHHHHHTTTBSEEE
T ss_pred -ec--------ccccceeec--c--------cccCHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 54 224444321 1 23456788888888888888887 55443
No 213
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=25.75 E-value=4.3e+02 Score=31.39 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|.-..|-++.+|+||+|+-=+.=-+..-. |++.-|. -....++=.++||++|+++||+.|+-+
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~------------P~G~~~~--~N~~gl~~Y~~lId~L~~~GI~P~VTL- 134 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIF------------PKGDELE--PNEAGLQFYEDIFKECHKYGIEPLVTI- 134 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcc------------cCCCCCC--CCHHHHHHHHHHHHHHHHcCCEEEEEe-
Confidence 4588888999999999999987643332110 0100011 122356788999999999999999754
Q ss_pred cccC
Q 047308 481 FTRT 484 (878)
Q Consensus 481 ~NH~ 484 (878)
.|.
T Consensus 135 -~H~ 137 (478)
T PRK09593 135 -THF 137 (478)
T ss_pred -ccc
Confidence 454
No 214
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.68 E-value=1.1e+02 Score=32.21 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 410 VHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 410 LdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
++.|+++|++.|.+ |--+... ..+|.+++++.|++.||.+|+++
T Consensus 78 ~~~l~~~G~~~vii-~~ser~~-------------------------~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGTLI-NHSERRL-------------------------TLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEEEE-ecccccc-------------------------CHHHHHHHHHHHHHCCCeEEEEc
Confidence 88999999999965 2111000 11679999999999999999743
No 215
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.68 E-value=1.8e+02 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=35.8
Q ss_pred HHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 410 VHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 410 LdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+-|++.|+++|.+ +.++.=- +-+..+++ +|+++.++++.++||+|++
T Consensus 20 ~~~L~~~Gikgvi~----DlDNTLv--------~wd~~~~t--------pe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 20 PDILKAHGIKGVIL----DLDNTLV--------PWDNPDAT--------PELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HHHHHHcCCcEEEE----eccCcee--------cccCCCCC--------HHHHHHHHHHHhcCCEEEE
Confidence 68899999999986 5444311 11233444 7999999999999999985
No 216
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.89 E-value=1.7e+02 Score=31.52 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
-+.+.|+.++++|+++|+|.+- + +..| .++ .. ..++++|-+.+.+.||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~---------~-~~~~-~~~--~~--------~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG---------R-PHAF-APD--LK--------AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC---------C-cccc-ccc--cC--------chHHHHHHHHHHHcCCeEE
Confidence 3778899999999999999421 1 1111 111 11 2578888888999999985
No 217
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.87 E-value=1.2e+02 Score=29.01 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCC
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDE 431 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~ 431 (878)
...+.+.|+.|.+.|+++|...|.+-+++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G 83 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPG 83 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECc
Confidence 34567789999999999999999987765
No 218
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.76 E-value=1.4e+02 Score=35.37 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTR 483 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH 483 (878)
.+.|+.+++.|++.|.+- +-...... .-.+.. + .+.++..+.|+.+|+.||.|..++++..
T Consensus 287 ~e~l~~l~~aG~~~v~iG-iES~s~~~-------L~~~~K--~------~~~~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVG-YESGDQQI-------LKNIKK--G------LTVEIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCCCHHH-------HHHhcC--C------CCHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 356889999999998863 22211100 001111 1 1358999999999999999999999864
No 219
>PRK07094 biotin synthase; Provisional
Probab=24.66 E-value=1.5e+02 Score=32.93 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccC
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRT 484 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~ 484 (878)
.+.+..||+.|++.|.+.. +... +.-+-.+.+. .+.++..+.++.+|+.||.|-.++++.+-
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--Es~~------~~~~~~i~~~--------~s~~~~~~~i~~l~~~Gi~v~~~~iiGlp 190 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--ETAD------KELYAKLHPG--------MSFENRIACLKDLKELGYEVGSGFMVGLP 190 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--ccCC------HHHHHHhCCC--------CCHHHHHHHHHHHHHcCCeecceEEEECC
Confidence 4568899999999998532 2211 1111112221 13589999999999999999999999764
No 220
>PLN02849 beta-glucosidase
Probab=24.65 E-value=3.4e+02 Score=32.47 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|.-..|-+.-+|+||+++--+.=-+.. +.|. |...-....++=.++||++|+++||+-|+-+
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsR--------------I~P~-G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL- 139 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSR--------------LIPN-GRGSVNPKGLQFYKNFIQELVKHGIEPHVTL- 139 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHh--------------cCcC-CCCCCCHHHHHHHHHHHHHHHHcCCeEEEee-
Confidence 45888889999999999999876322221 1110 1000122356788999999999999999754
Q ss_pred cccC
Q 047308 481 FTRT 484 (878)
Q Consensus 481 ~NH~ 484 (878)
.|.
T Consensus 140 -~H~ 142 (503)
T PLN02849 140 -FHY 142 (503)
T ss_pred -cCC
Confidence 464
No 221
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=24.63 E-value=62 Score=34.37 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 407 TEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 407 ~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
...+....++|.+.|-++.-+...... .....++++++++++||+.||.||+...+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-------------------~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-------------------NEDEVIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-------------------HHHHHHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-------------------cHHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 556788889999999987765321100 001146999999999999999999996664
No 222
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=24.47 E-value=2.1e+02 Score=31.96 Aligned_cols=98 Identities=12% Similarity=0.256 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
++..=.+.+..+++.|.|+=.--|= +..|.-..+..+- |...+++||+||++|+++||..+.=+-+
T Consensus 13 s~e~R~~l~~f~~~~kmN~YiYAPK------dDpyhr~~Wre~Y--------p~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 13 SHEDRLDLIRFLGRYKMNTYIYAPK------DDPYHRSKWREPY--------PEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp -HHHHHHHHHHHHHTT--EEEE--T------T-TTTTTTTTS-----------HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CHHHHHHHHHHHHHcCCceEEECCC------CChHHHhhhcccC--------CHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 4455556678888999987554331 1234444443332 2336799999999999999988765544
Q ss_pred ccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 047308 482 TRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCF 541 (878)
Q Consensus 482 NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRf 541 (878)
- .++.++..+..+.|+.=+.-.. +.||.-|-+
T Consensus 79 g---------------------------~~~~~s~~~d~~~L~~K~~ql~-~lGvr~Fai 110 (306)
T PF07555_consen 79 G---------------------------LDICYSSEEDFEALKAKFDQLY-DLGVRSFAI 110 (306)
T ss_dssp T---------------------------TT--TSHHHHHHHHHHHHHHHH-CTT--EEEE
T ss_pred c---------------------------cccccCcHHHHHHHHHHHHHHH-hcCCCEEEE
Confidence 2 3344555566677777666666 899998875
No 223
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=24.28 E-value=2e+02 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
.++.||+|++++|++|-++++-+ +|.+.
T Consensus 78 ~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~ 105 (341)
T PF00724_consen 78 QIPGLKKLADAVHAHGAKIIAQL--WHAGR 105 (341)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE--E--GG
T ss_pred HHHHHHHHHHHHHhcCccceeec--ccccc
Confidence 68999999999999999999975 56654
No 224
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.04 E-value=99 Score=35.64 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 408 EKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 408 ~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
++|..|+++|||.|.| .|..++..- +-.+ .+-- +.++..+.|+.+++.+..|-+|++++.-+.
T Consensus 123 e~L~~l~~~Gvnrisi-GvQS~~~~~-------L~~l-~R~~-------~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 123 EKFAQFRASGVNRLSI-GIQSFNDAH-------LKAL-GRIH-------DGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHcCCCeEEE-ecccCCHHH-------HHHh-CCCC-------CHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 6899999999999997 344332210 0011 1111 237888899999999999999999986553
No 225
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.04 E-value=3.2e+02 Score=30.72 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccCCCC
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVVFTRTADG 487 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV~NH~~~~ 487 (878)
.++.||+|++++|++|-++++-+ +|.+..
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~ 108 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWAQL--NHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--cCCCcC
Confidence 57999999999999999998875 576653
No 226
>PRK15447 putative protease; Provisional
Probab=23.69 E-value=1.8e+02 Score=32.21 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.|++..+. ..|++.|+++|+|-- +. |. .-..| +.+|+++.|+.+|++|.+|.+
T Consensus 14 ~~~~~~~~---~~~~~~gaDaVY~g~--~~------~~------~R~~f--------~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 14 KETVRDFY---QRAADSPVDIVYLGE--TV------CS------KRREL--------KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCCHHHHH---HHHHcCCCCEEEECC--cc------CC------CccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 46666664 457889999999952 11 11 10112 349999999999999999988
No 227
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=23.56 E-value=6.3e+02 Score=29.24 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCcEEEEEecccccCCCCCCCCCCCCCCHHHHHHH-----------HHHHHhcCCCeEEEccCcccCCCCCCCCCCCCC
Q 047308 374 MEKLVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEK-----------VHHLKDLGVNAILLEPILSFDEQKGPYFPRHFF 442 (878)
Q Consensus 374 ~~d~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~k-----------LdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yf 442 (878)
.+...+|+-||..|.+.. -|+|..++++ ..-+|+.|...|- ||.++....--| +.+|-
T Consensus 21 ~e~~~~~~fh~nT~~dq~--------~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvi--lvakHHDGFaLw-~t~ys 89 (430)
T COG3669 21 QEGSPFYHFHPNTYGDQE--------WFGGQEFPPRFTAENWDPREWARLFKEAGAKYVI--LVAKHHDGFALW-PTDYS 89 (430)
T ss_pred ccCCceEEeccccccCcc--------cccccccccccCcccCCHHHHHHHHHHcCCcEEE--EeeeecCCeeec-ccccc
Confidence 467889999999998754 3566666654 6779999988765 455543321112 23332
Q ss_pred Cc-cCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 443 SP-TKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 443 a~-d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
.- .+..|.+. +-++++-+++.+.||+. -|++|-+.
T Consensus 90 ~wnsvk~GpKr------Dlvgela~Avr~qGL~F---Gvy~s~a~ 125 (430)
T COG3669 90 VWNSVKRGPKR------DLVGELAKAVREQGLRF---GVYLSGAW 125 (430)
T ss_pred cccccccCCcc------cHHHHHHHHHHHcCCee---eEeeccCc
Confidence 22 23445442 56788888888999876 46888664
No 228
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=23.52 E-value=81 Score=30.17 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 454 SISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 454 ~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
...++.|+|.+-+.+.++||+|++|=
T Consensus 17 ri~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 17 RIMSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred EeeeHHHHHHHHHHHHhCCcEEEECC
Confidence 34567999999999999999999884
No 229
>PRK05967 cystathionine beta-lyase; Provisional
Probab=23.35 E-value=85 Score=36.29 Aligned_cols=31 Identities=10% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFTR 483 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~NH 483 (878)
+|..++.+++++++.||++|+-||.|-++..
T Consensus 160 NP~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 160 SNTFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 3456789999999999999999999999853
No 230
>PRK09028 cystathionine beta-lyase; Provisional
Probab=23.35 E-value=85 Score=36.25 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
.|.+.+.+++++++.||++|+-||+|-++.
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 345578999999999999999999998885
No 231
>PRK09936 hypothetical protein; Provisional
Probab=23.28 E-value=3.1e+02 Score=30.30 Aligned_cols=101 Identities=12% Similarity=0.270 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 403 FSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 403 ~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
-..-.+.+.-++.+|+++|.+. . .+|- ++.||+. .--|.+.+++|++.||+|++=+-++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ----W----t~yG-------~~~fg~~------~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ----W----TRYG-------DADFGGQ------RGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE----e----eecc-------CCCcccc------hHHHHHHHHHHHHcCCEEEEcccCC
Confidence 3445566888999999999872 1 1231 1245543 3689999999999999999988775
Q ss_pred cCCCCcCCCCCCCCCccccCCCCCCcccccC-CCCHHHHHHHHHHHHHHHHh--cCccEEEE
Q 047308 483 RTADGALQGIDDSSYYYAHRGEGIETTNVLN-CNYPTVQQMILNSLRHWVTE--FHIDGFCF 541 (878)
Q Consensus 483 H~~~~~~~~~d~~~yY~~~~~~~~~~~~dln-~~~p~Vr~~iid~l~~Wl~e--~gVDGFRf 541 (878)
+.||.+...++ ..++ |=+... ..=+.-.+.|-.. ++|+|+-|
T Consensus 96 ------------p~y~q~~~~d~----~~~~~yl~~~l-~~~~~qa~~~~~~~~~~v~GWYi 140 (296)
T PRK09936 96 ------------PEFFMHQKQDG----AALESYLNRQL-GASLQQARLWSAAWGVPVDGWYL 140 (296)
T ss_pred ------------hHHHHHHhcCc----hhHHHHHHHHH-HHHHHHHHHHHhccCCCCCeEEe
Confidence 57775542111 1111 000011 1112256777777 45599997
No 232
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=22.89 E-value=1.2e+02 Score=35.07 Aligned_cols=67 Identities=15% Similarity=0.423 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEccCc-ccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEE
Q 047308 400 AGTFSGVTEKVHHLKDLGVNAILLEPIL-SFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLE 478 (878)
Q Consensus 400 ~Gt~~gi~~kLdyLk~LGvt~I~L~PI~-~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILD 478 (878)
.+++.++...|..||++||+.|.+ +|+ -.-+..+ |.. | ...-.++|.+-+++.|++|..=
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmv-dvWWGiVE~~~---p~~-------y--------dWs~Y~~l~~~vr~~GLk~~~v 72 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMV-DVWWGIVEGEG---PQQ-------Y--------DWSGYRELFEMVRDAGLKLQVV 72 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEE-EEEHHHHTGSS---TTB------------------HHHHHHHHHHHHTT-EEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEE-EeEeeeeccCC---CCc-------c--------CcHHHHHHHHHHHHcCCeEEEE
Confidence 367889999999999999999986 332 1111110 111 1 2477899999999999999876
Q ss_pred EecccCC
Q 047308 479 VVFTRTA 485 (878)
Q Consensus 479 vV~NH~~ 485 (878)
+-+.-++
T Consensus 73 msfH~cG 79 (402)
T PF01373_consen 73 MSFHQCG 79 (402)
T ss_dssp EE-S-BS
T ss_pred EeeecCC
Confidence 6665444
No 233
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.87 E-value=2.2e+02 Score=31.33 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHID 537 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVD 537 (878)
.+++.+-|..++++||+|.--+..+--+ +.++.+++.++.-. +.+||
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLPg--------------------------------E~~~~mleTak~v~-~~~v~ 213 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLPG--------------------------------ETRDEMLETAKIVA-ELGVD 213 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCCC--------------------------------CCHHHHHHHHHHHH-hcCCc
Confidence 3789999999999999998766654221 35788999999666 99999
Q ss_pred EEEEc
Q 047308 538 GFCFI 542 (878)
Q Consensus 538 GFRfD 542 (878)
|.-+-
T Consensus 214 GIKlH 218 (312)
T COG1242 214 GIKLH 218 (312)
T ss_pred eEEEE
Confidence 99983
No 234
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.86 E-value=1.4e+02 Score=32.29 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEE
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVL 476 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VI 476 (878)
..+.+.|+.++++|+++|+|.+ -.... +..+.++ +.+++++|.+.+-++||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~-~~~~~---~~~~~~~---------------~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSV-DETDD---RLSRLDW---------------SREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEec-CCccc---hhhccCC---------------CHHHHHHHHHHHHHcCCCce
Confidence 3577889999999999999942 21110 0111111 12788889999999999985
No 235
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=22.69 E-value=94 Score=34.67 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 515 NYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 515 ~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
.++..|+.+++++.-|++++++||+-+|
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4677899999999999999999999998
No 236
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.69 E-value=53 Score=36.04 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEec
Q 047308 459 NSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 459 ~elk~LV~~aH~~GI~VILDvV~ 481 (878)
+-+++||++|++- |.|+||+--
T Consensus 137 E~vR~~I~~A~kV-IAIVMD~FT 158 (284)
T PF07894_consen 137 EVVRRMIQQAQKV-IAIVMDVFT 158 (284)
T ss_pred HHHHHHHHHhcce-eEEEeeccc
Confidence 7789999999998 999999753
No 237
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.60 E-value=7.3e+02 Score=26.62 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 405 GVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 405 gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+.+.++-++++|+++|+|.+- +.. . +... ..+. .++++++-+.+.+.||.|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~----~-----~~~~-~~~~--------~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESD----E-----RLAR-LDWS--------REQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-ccc----c-----chhc-cCCC--------HHHHHHHHHHHHHcCCceeE
Confidence 3567789999999999999431 100 0 0000 0111 26788888899999999864
No 238
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.92 E-value=1.3e+02 Score=37.08 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEccCccc-CC-CCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 404 SGVTEKVHHLKDLGVNAILLEPILSF-DE-QKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 404 ~gi~~kLdyLk~LGvt~I~L~PI~~~-~~-~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
..+.+.|.-.|++|+|+|.+..+.=. .+ ..+-|+ |+ ..|.. +++.|++.||.|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fd----------f~--------~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFD----------FT--------WLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccC----------cc--------cchHH-HHHHHHhcCceEEEecCC
Confidence 56778899999999999998665321 00 011122 22 14555 899999999999997766
Q ss_pred ccCC
Q 047308 482 TRTA 485 (878)
Q Consensus 482 NH~~ 485 (878)
+-..
T Consensus 91 ~g~~ 94 (673)
T COG1874 91 TGAP 94 (673)
T ss_pred CCCC
Confidence 4333
No 239
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=21.65 E-value=1.9e+02 Score=32.34 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=70.8
Q ss_pred cEEEEEecccccCCCC--CCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCC-CC
Q 047308 377 LVVYRLNVMRFSEHKS--SKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPS-RG 453 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~--s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~-~~ 453 (878)
-.||=++|..=.+... +..|+..+=+...+.+.+..+.++||++|.|-|+.+....+. .|+. .+
T Consensus 28 dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~-------------~gs~a~~ 94 (324)
T PF00490_consen 28 DLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDE-------------EGSEAYN 94 (324)
T ss_dssp GEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BS-------------S-GGGGS
T ss_pred HeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCc-------------chhcccC
Confidence 4688888775433211 234444445788999999999999999999999854221110 0110 01
Q ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcc--cccCCCCHHHHHHHHHHHHHHH
Q 047308 454 SISAINSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETT--NVLNCNYPTVQQMILNSLRHWV 531 (878)
Q Consensus 454 ~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~--~dln~~~p~Vr~~iid~l~~Wl 531 (878)
+.+-+..--+.|++.. -.|-||-||-+......+ .++-. .+=.-.|.+..+.+.+...-..
T Consensus 95 ~~g~v~~air~iK~~~-pdl~vi~Dvclc~YT~hG----------------HcGil~~~~g~idND~Tl~~Lak~Al~~A 157 (324)
T PF00490_consen 95 PDGLVQRAIRAIKKAF-PDLLVITDVCLCEYTSHG----------------HCGILDDEDGEIDNDETLERLAKQALSHA 157 (324)
T ss_dssp TTSHHHHHHHHHHHHS-TTSEEEEEE-STTTBTSS----------------SSSEB-CTTSSBEHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhC-CCcEEEEecccccccCCC----------------ceEEEECCCCeEecHHHHHHHHHHHHHHH
Confidence 1112233333333333 579999999987543211 01111 1112345677777777777777
Q ss_pred HhcCccEE
Q 047308 532 TEFHIDGF 539 (878)
Q Consensus 532 ~e~gVDGF 539 (878)
+-|.|-.
T Consensus 158 -~AGADiV 164 (324)
T PF00490_consen 158 -EAGADIV 164 (324)
T ss_dssp -HHT-SEE
T ss_pred -HhCCCee
Confidence 6788854
No 240
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.55 E-value=1e+02 Score=32.52 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
.++......++...++|++.|-+.--.... + .....++++++++.||+.|+.+|+|+.
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~--------------~--------~~~~~~~i~~v~~~~~~~g~~~iie~~ 130 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSE--------------E--------EREMLEELARVAAEAHKYGLPLIAWMY 130 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCc--------------h--------HHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 456666667889999999998542211100 0 011457999999999999999999864
Q ss_pred c
Q 047308 481 F 481 (878)
Q Consensus 481 ~ 481 (878)
.
T Consensus 131 ~ 131 (235)
T cd00958 131 P 131 (235)
T ss_pred c
Confidence 4
No 241
>PLN02803 beta-amylase
Probab=21.37 E-value=4.1e+02 Score=31.82 Aligned_cols=79 Identities=13% Similarity=0.289 Sum_probs=53.1
Q ss_pred cEEEEEecccccCCCCCCCCCCCCCCH---HHHHHHHHHHHhcCCCeEEEccCcccCCCCCCC----CCCCCCCccCCCC
Q 047308 377 LVVYRLNVMRFSEHKSSKLPPDIAGTF---SGVTEKVHHLKDLGVNAILLEPILSFDEQKGPY----FPRHFFSPTKLHG 449 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~s~~~~~~~Gt~---~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY----~~~~yfa~d~~yG 449 (878)
.-+|=+.+-+.-..+ |++ ++|...|..||.+||+.|-+ +|+ ||. .|..|
T Consensus 86 vpvyVMlPLd~V~~~---------~~~~~~~~l~~~L~~LK~~GVdGVmv-DVW------WGiVE~~~p~~Y-------- 141 (548)
T PLN02803 86 VPVFVMLPLDTVTMG---------GNLNKPRAMNASLMALRSAGVEGVMV-DAW------WGLVEKDGPMKY-------- 141 (548)
T ss_pred eeEEEEeecceeccC---------CcccCHHHHHHHHHHHHHcCCCEEEE-Eee------eeeeccCCCCcC--------
Confidence 456666665544322 444 88999999999999999986 332 221 11111
Q ss_pred CCCCCcchHHHHHHHHHHHHHCCCEEEEEEecccCCC
Q 047308 450 PSRGSISAINSMKEMVKKLHANGIEVLLEVVFTRTAD 486 (878)
Q Consensus 450 t~~~~~~~i~elk~LV~~aH~~GI~VILDvV~NH~~~ 486 (878)
.+.-.++|++-+.+.|++|..=+-|.-++.
T Consensus 142 -------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 142 -------NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred -------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 236788888999999999987666655554
No 242
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.34 E-value=2.7e+02 Score=30.91 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCC----HHHHHHHHHHHHHHHHh
Q 047308 458 INSMKEMVKKLHANGIEVLLEVVFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNY----PTVQQMILNSLRHWVTE 533 (878)
Q Consensus 458 i~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~----p~Vr~~iid~l~~Wl~e 533 (878)
++.+|++++++|+.|-++++-+ +|.+..+.........+.............-.-=. .++.+.+.++++... +
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~ 152 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-E 152 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-H
Q ss_pred cCccEEEEccCcccc
Q 047308 534 FHIDGFCFINASSLL 548 (878)
Q Consensus 534 ~gVDGFRfD~a~~l~ 548 (878)
.|+||+-+-++...+
T Consensus 153 aGfDgveih~~~gyL 167 (327)
T cd02803 153 AGFDGVEIHGAHGYL 167 (327)
T ss_pred cCCCEEEEcchhhhH
No 243
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.22 E-value=1.5e+02 Score=30.96 Aligned_cols=47 Identities=23% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
++-...++.++.+.+.|+++|-+.|+.. +.+..++++|.++||.||+
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------------------------------~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP------------------------------DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST------------------------------TTTHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH------------------------------HHHHHHHHHHhhcCceEEE
Confidence 5677788888888899999999877643 3467889999999999998
No 244
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=21.16 E-value=2.1e+02 Score=26.51 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCeEEEccCcccCC
Q 047308 406 VTEKVHHLKDLGVNAILLEPILSFDE 431 (878)
Q Consensus 406 i~~kLdyLk~LGvt~I~L~PI~~~~~ 431 (878)
+.+.|+.+++.|++.|.+.|.|-+++
T Consensus 47 ~~~~l~~l~~~g~~~i~vvP~fL~~G 72 (117)
T cd03414 47 LPEALERLRALGARRVVVLPYLLFTG 72 (117)
T ss_pred HHHHHHHHHHcCCCEEEEEechhcCC
Confidence 55667778889999999999987654
No 245
>PLN02229 alpha-galactosidase
Probab=21.12 E-value=4.2e+02 Score=30.99 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=37.2
Q ss_pred CHHHHHHHH--HHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEE
Q 047308 402 TFSGVTEKV--HHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 402 t~~gi~~kL--dyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VIL 477 (878)
.+...++.+ ..|+++|++.|.|=--+.... -+...-..|++ +|- .-||.|++.+|++||+.=+
T Consensus 81 ~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~----rd~~G~l~~d~~rFP---------~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 81 VIKETADALVSTGLADLGYIHVNIDDCWSNLK----RDSKGQLVPDPKTFP---------SGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred HHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC----cCCCCCEEEChhhcC---------CcHHHHHHHHHHCCCceEE
Confidence 355555543 558999999998722111000 01112233333 343 3599999999999998744
No 246
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.94 E-value=2.5e+02 Score=31.88 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=45.5
Q ss_pred EEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcC----CCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcc
Q 047308 381 RLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLG----VNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456 (878)
Q Consensus 381 evhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LG----vt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~ 456 (878)
-+.+.++.++ -..+.+-+++++.++ +.+|.|+|.++.+... . .|-.+
T Consensus 253 y~LI~GvNDs------------~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-----~-------~~~~p----- 303 (347)
T PRK14453 253 YIMLEGVNDS------------KEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-----F-------KFQSS----- 303 (347)
T ss_pred EEeECCCCCC------------HHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-----c-------cCCCC-----
Confidence 3466777654 344555567778774 6899999988754310 0 12222
Q ss_pred hHHHHHHHHHHHHHCCCEEEE
Q 047308 457 AINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VIL 477 (878)
+.+++++|.+.+.++||.|.+
T Consensus 304 s~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 304 SAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred CHHHHHHHHHHHHHCCCcEEE
Confidence 358899999999999999874
No 247
>PLN02808 alpha-galactosidase
Probab=20.89 E-value=1.6e+02 Score=33.89 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHH--HHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccC-CCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Q 047308 403 FSGVTEKV--HHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTK-LHGPSRGSISAINSMKEMVKKLHANGIEVLLEV 479 (878)
Q Consensus 403 ~~gi~~kL--dyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~-~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDv 479 (878)
+...++.+ .-|+++|++.|.|=--+.... -+...-..|++ +|- ..||.|++.+|++||+.=+=.
T Consensus 51 i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~----rd~~G~~~~d~~rFP---------~G~~~lad~iH~~GlkfGiy~ 117 (386)
T PLN02808 51 IKQTADAMVSSGLAALGYKYINLDDCWAELK----RDSQGNLVPKASTFP---------SGIKALADYVHSKGLKLGIYS 117 (386)
T ss_pred HHHHHHHHHHcchHHhCCEEEEEcCCcCCCC----cCCCCCEeeChhhcC---------ccHHHHHHHHHHCCCceEEEe
Confidence 44444443 237999999999822111000 01111122332 333 459999999999999864411
Q ss_pred ecccCCCCcCCCCCCCCCccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEccCc
Q 047308 480 VFTRTADGALQGIDDSSYYYAHRGEGIETTNVLNCNYPTVQQMILNSLRHWVTEFHIDGFCFINAS 545 (878)
Q Consensus 480 V~NH~~~~~~~~~d~~~yY~~~~~~~~~~~~dln~~~p~Vr~~iid~l~~Wl~e~gVDGFRfD~a~ 545 (878)
.. +. . .|. ...|..+.+...-++.+. +.|||=.-+|...
T Consensus 118 ~~---G~-----------------~--tC~----~~~pGs~~~e~~DA~~fA-~WGvDylK~D~C~ 156 (386)
T PLN02808 118 DA---GT-----------------L--TCS----KTMPGSLGHEEQDAKTFA-SWGIDYLKYDNCE 156 (386)
T ss_pred cC---Cc-----------------c--ccC----CCCCcchHHHHHHHHHHH-HhCCCEEeecCcC
Confidence 11 00 0 010 012334455555567777 8999999999753
No 248
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.71 E-value=2.7e+02 Score=31.59 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=45.9
Q ss_pred EEEEE-ecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcc
Q 047308 378 VVYRL-NVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSIS 456 (878)
Q Consensus 378 VIYev-hv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~ 456 (878)
|..|. .+.++.++. ..+.+-.+.|+.+++ +|.|+|.++.+.. +|. .+
T Consensus 256 I~iey~LIpGvNDs~------------e~a~~La~~l~~l~~-~VnLIPynp~~~~--~~~------------~p----- 303 (345)
T PRK14457 256 VSFEYILLGGVNDLP------------EHAEELANLLRGFQS-HVNLIPYNPIDEV--EFQ------------RP----- 303 (345)
T ss_pred EEEEEEEECCcCCCH------------HHHHHHHHHHhcCCC-eEEEecCCCCCCC--CCC------------CC-----
Confidence 45554 677777643 334444567777776 8999998875442 131 11
Q ss_pred hHHHHHHHHHHHHHCCCEEEE
Q 047308 457 AINSMKEMVKKLHANGIEVLL 477 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VIL 477 (878)
+.++++++.+.+.++||.|.+
T Consensus 304 s~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 304 SPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred CHHHHHHHHHHHHHCCCeEEE
Confidence 348889999999999999863
No 249
>PLN02998 beta-glucosidase
Probab=20.70 E-value=4e+02 Score=31.83 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|.-..|-++.+|+||+|+-=+.=-+.. +-|. |...-....++=.++||++|.++||+.|+-+
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsR--------------I~P~-G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL- 142 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSR--------------LLPS-GRGPINPKGLQYYNNLIDELITHGIQPHVTL- 142 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHh--------------cCcC-CCCCcCHHHHHHHHHHHHHHHHcCCceEEEe-
Confidence 45888889999999999999775322221 1110 1001122357889999999999999999754
Q ss_pred cccC
Q 047308 481 FTRT 484 (878)
Q Consensus 481 ~NH~ 484 (878)
.|.
T Consensus 143 -~H~ 145 (497)
T PLN02998 143 -HHF 145 (497)
T ss_pred -cCC
Confidence 464
No 250
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=20.61 E-value=1.3e+02 Score=32.85 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCC
Q 047308 403 FSGVTEKVHHLKDLG--VNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANG 472 (878)
Q Consensus 403 ~~gi~~kLdyLk~LG--vt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~G 472 (878)
...+.+-++.++++| |..|.|+|.++..... |...+---+...+-++ +.++++++.+.+.+.|
T Consensus 231 ~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~--~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 231 EENIEAIAAFLRKLEPGVDEIDLLPYHRLGENK--YRQLGREYPDSEIPDP-----AEEQLLELKEIFESKG 295 (295)
T ss_pred HHHHHHHHHHHHHhccCCceEEecCCCchhHHH--HHHhCCCCccCCCCCC-----CHHHHHHHHHHHHhcC
Confidence 556667778889999 8999999998765432 3221110111111111 3477777776665554
No 251
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.60 E-value=2.4e+02 Score=28.23 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 402 TFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 402 t~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
.....++...+.+++|+++|.++|.+-+ .++. +...-.+.++++++++ +.++-|++...+
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~-------------~~~~------~~~~~~~~~~~i~~~~-~~~~pv~iy~~p 122 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGS-------------LKEG------DWEEVLEEIAAVVEAA-DGGLPLKVILET 122 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHH-------------HhCC------CHHHHHHHHHHHHHHh-cCCceEEEEEEC
Confidence 3788889999999999999999876521 1110 0112335555565555 569999987766
Q ss_pred cc
Q 047308 482 TR 483 (878)
Q Consensus 482 NH 483 (878)
.+
T Consensus 123 ~~ 124 (201)
T cd00945 123 RG 124 (201)
T ss_pred CC
Confidence 43
No 252
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=20.58 E-value=4.9e+02 Score=29.91 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccC-CC
Q 047308 457 AINSMKEMVKKLHANGIEVLLEVVFTRT-AD 486 (878)
Q Consensus 457 ~i~elk~LV~~aH~~GI~VILDvV~NH~-~~ 486 (878)
.++.||+|++++|++|-++++-+ +|. +.
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 36889999999999999999776 575 54
No 253
>PRK05939 hypothetical protein; Provisional
Probab=20.25 E-value=1.1e+02 Score=35.46 Aligned_cols=29 Identities=3% Similarity=0.115 Sum_probs=25.4
Q ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEEec
Q 047308 453 GSISAINSMKEMVKKLHANGIEVLLEVVF 481 (878)
Q Consensus 453 ~~~~~i~elk~LV~~aH~~GI~VILDvV~ 481 (878)
.|.+.+.+++++++.||++|+-||+|-++
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 45567799999999999999999999765
No 254
>PLN02814 beta-glucosidase
Probab=20.21 E-value=4.9e+02 Score=31.17 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCCCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHCCCEEEEEEe
Q 047308 401 GTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPYFPRHFFSPTKLHGPSRGSISAINSMKEMVKKLHANGIEVLLEVV 480 (878)
Q Consensus 401 Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY~~~~yfa~d~~yGt~~~~~~~i~elk~LV~~aH~~GI~VILDvV 480 (878)
..|--..|-++-+|+||+++--+.=-+..-... |- | .-....++=.++||++|.++||+.|+=+
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~-G~------------g--~~N~~Gl~fY~~lId~l~~~GI~P~VTL- 137 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPN-GR------------G--LINPKGLLFYKNLIKELRSHGIEPHVTL- 137 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcC-CC------------C--CCCHHHHHHHHHHHHHHHHcCCceEEEe-
Confidence 458888899999999999998764222210000 10 1 1122357888999999999999999754
Q ss_pred cccC
Q 047308 481 FTRT 484 (878)
Q Consensus 481 ~NH~ 484 (878)
.|.
T Consensus 138 -~H~ 140 (504)
T PLN02814 138 -YHY 140 (504)
T ss_pred -cCC
Confidence 464
No 255
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=20.14 E-value=1.1e+02 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 515 NYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 515 ~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
.++..|+-+++++.-+++++|+||+-+|
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 4678899999999999999999999987
No 256
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=20.12 E-value=1.1e+02 Score=34.00 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 047308 515 NYPTVQQMILNSLRHWVTEFHIDGFCFI 542 (878)
Q Consensus 515 ~~p~Vr~~iid~l~~Wl~e~gVDGFRfD 542 (878)
.++..|+.+++++.-|+++++.||+-+|
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiD 114 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDID 114 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEC
Confidence 4577899999999999999999999998
No 257
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.11 E-value=1.5e+02 Score=31.96 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=57.8
Q ss_pred cEEEEEecccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEccCcccCCCCCCC--------CCCCCCCccCCC
Q 047308 377 LVVYRLNVMRFSEHKSSKLPPDIAGTFSGVTEKVHHLKDLGVNAILLEPILSFDEQKGPY--------FPRHFFSPTKLH 448 (878)
Q Consensus 377 ~VIYevhv~~Ft~~~~s~~~~~~~Gt~~gi~~kLdyLk~LGvt~I~L~PI~~~~~~~~gY--------~~~~yfa~d~~y 448 (878)
.++.|+-=+.. ..+...+...+.+|+++||. |.| =+|.. || -+.|+-.+|.+|
T Consensus 121 ~l~lEitE~~~------------~~~~~~~~~~l~~L~~~G~~-ial---DDFGt---G~ssl~~L~~l~~d~iKID~~f 181 (256)
T COG2200 121 RLVLEITESAL------------IDDLDTALALLRQLRELGVR-IAL---DDFGT---GYSSLSYLKRLPPDILKIDRSF 181 (256)
T ss_pred eEEEEEeCchh------------hcCHHHHHHHHHHHHHCCCe-EEE---ECCCC---CHHHHHHHhhCCCCeEEECHHH
Confidence 57777755443 24566677789999999965 332 22322 33 355667777777
Q ss_pred CCC-CCCcchHHHHHHHHHHHHHCCCEEEEEEecc
Q 047308 449 GPS-RGSISAINSMKEMVKKLHANGIEVLLEVVFT 482 (878)
Q Consensus 449 Gt~-~~~~~~i~elk~LV~~aH~~GI~VILDvV~N 482 (878)
-.. ........=++.+|+-||+.||.||...|=+
T Consensus 182 i~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 182 VRDLETDARDQAIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCC
Confidence 654 2222233569999999999999999998865
Done!