BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047309
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O8N|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|3RNO|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nadp.
pdb|3RO7|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymine.
pdb|3ROE|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROG|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine 3'-Monophosphate
pdb|3ROX|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Theophylline
pdb|3ROZ|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nicotinamide
Length = 265
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 69 VYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDG 121
+Y+L+ G SF DVRE F S++S L V I ++ S W+V G
Sbjct: 150 LYELVVDAIFGFSFKGDVREPFH---SILSVLSGLTVPIASIDIPSGWDVEKG 199
>pdb|2DG2|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
Length = 265
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 69 VYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDG 121
+Y+L+ G SF DVRE F S++S L V I ++ S W+V G
Sbjct: 150 LYELVVDAIFGFSFKGDVREPFH---SILSVLSGLTVPIASIDIPSGWDVEKG 199
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGS 80
+T K I +L + + +++ G + +IGI G G+GKT AR++ I+ + EGS
Sbjct: 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGS 324
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 68 VVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQL 103
+ YD + EG + ADV EK + + +V +RQ+
Sbjct: 227 ITYDQLDDYLEGKTVPADVAEKIEKRYTVSEHKRQV 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,105,037
Number of Sequences: 62578
Number of extensions: 236791
Number of successful extensions: 675
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)