Query 047309
Match_columns 218
No_of_seqs 120 out of 1341
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00931 NB-ARC: NB-ARC domain 100.0 8.8E-28 1.9E-32 190.6 11.9 169 30-204 1-174 (287)
2 PLN03210 Resistant to P. syrin 99.9 2E-26 4.4E-31 211.4 21.6 212 1-217 159-381 (1153)
3 KOG4658 Apoptotic ATPase [Sign 99.9 8E-26 1.7E-30 199.9 14.6 183 28-218 161-349 (889)
4 PRK00411 cdc6 cell division co 99.6 1.7E-14 3.6E-19 119.5 16.0 176 21-201 26-221 (394)
5 PF05729 NACHT: NACHT domain 99.6 2.2E-14 4.8E-19 104.4 12.2 144 50-201 1-164 (166)
6 TIGR02928 orc1/cdc6 family rep 99.6 1E-13 2.3E-18 113.6 16.1 177 20-201 10-213 (365)
7 PF01637 Arch_ATPase: Archaeal 99.5 1.9E-14 4.2E-19 110.4 7.4 170 27-202 1-206 (234)
8 PRK06893 DNA replication initi 99.5 1.7E-12 3.7E-17 99.7 12.9 124 48-202 38-176 (229)
9 COG2256 MGS1 ATPase related to 99.5 9.6E-13 2.1E-17 105.2 11.3 147 21-200 20-176 (436)
10 PTZ00112 origin recognition co 99.4 4.8E-12 1E-16 110.5 13.9 175 20-202 750-951 (1164)
11 PRK08727 hypothetical protein; 99.4 1.9E-11 4E-16 94.1 14.0 159 23-215 18-192 (233)
12 COG1474 CDC6 Cdc6-related prot 99.3 6E-11 1.3E-15 96.6 15.4 174 19-201 11-204 (366)
13 PF13191 AAA_16: AAA ATPase do 99.3 1.5E-12 3.2E-17 96.6 5.5 51 26-76 1-51 (185)
14 TIGR03015 pepcterm_ATPase puta 99.3 9.4E-11 2E-15 92.2 15.3 170 23-201 17-206 (269)
15 PTZ00202 tuzin; Provisional 99.3 8.6E-11 1.9E-15 95.9 14.5 167 19-200 256-434 (550)
16 PRK08084 DNA replication initi 99.3 7.5E-11 1.6E-15 90.9 13.4 149 19-201 17-181 (235)
17 TIGR03420 DnaA_homol_Hda DnaA 99.3 5.6E-11 1.2E-15 91.1 12.5 144 24-201 14-173 (226)
18 PRK05642 DNA replication initi 99.3 1.7E-10 3.8E-15 88.8 13.5 149 22-201 17-180 (234)
19 KOG2028 ATPase related to the 99.3 5.6E-11 1.2E-15 94.2 10.5 151 19-198 132-292 (554)
20 PF00308 Bac_DnaA: Bacterial d 99.3 1.8E-10 3.8E-15 87.8 12.9 158 22-201 6-180 (219)
21 PRK13342 recombination factor 99.3 8.8E-11 1.9E-15 97.8 12.2 148 21-201 8-165 (413)
22 PF13173 AAA_14: AAA domain 99.3 4.8E-11 1E-15 83.4 9.0 119 50-192 3-127 (128)
23 PRK07003 DNA polymerase III su 99.2 8.7E-11 1.9E-15 101.8 11.7 170 21-202 12-193 (830)
24 PRK12402 replication factor C 99.2 2E-10 4.3E-15 93.2 12.8 173 22-201 12-198 (337)
25 PRK14956 DNA polymerase III su 99.2 1.6E-10 3.4E-15 96.2 11.1 185 21-214 14-209 (484)
26 PRK04841 transcriptional regul 99.2 5.5E-10 1.2E-14 101.7 15.6 169 20-202 9-201 (903)
27 PRK14961 DNA polymerase III su 99.2 8.4E-10 1.8E-14 90.4 14.7 169 22-202 13-193 (363)
28 PF13401 AAA_22: AAA domain; P 99.2 1E-10 2.2E-15 81.9 8.0 114 48-169 3-125 (131)
29 TIGR01242 26Sp45 26S proteasom 99.2 1.8E-10 3.8E-15 94.5 10.4 171 21-215 118-322 (364)
30 PRK09087 hypothetical protein; 99.2 2.1E-10 4.5E-15 87.8 10.1 116 47-202 42-168 (226)
31 PRK00440 rfc replication facto 99.2 6.4E-10 1.4E-14 89.5 13.3 157 22-201 14-175 (319)
32 TIGR00635 ruvB Holliday juncti 99.2 1.8E-10 3.9E-15 92.3 9.8 51 25-75 4-56 (305)
33 cd00009 AAA The AAA+ (ATPases 99.2 7.9E-10 1.7E-14 78.3 12.0 53 28-83 1-53 (151)
34 PRK04195 replication factor C 99.2 4.2E-10 9.1E-15 95.5 12.2 168 21-214 10-189 (482)
35 PLN03025 replication factor C 99.2 5.8E-10 1.3E-14 89.9 12.4 160 21-202 9-173 (319)
36 PRK14949 DNA polymerase III su 99.2 6.2E-10 1.3E-14 98.2 13.0 164 22-201 13-192 (944)
37 PRK14960 DNA polymerase III su 99.2 5.2E-10 1.1E-14 96.0 12.2 181 22-214 12-206 (702)
38 PRK14088 dnaA chromosomal repl 99.1 2.2E-09 4.8E-14 89.9 15.2 170 24-216 105-294 (440)
39 PRK08903 DnaA regulatory inact 99.1 4.2E-10 9.1E-15 86.4 9.8 142 22-200 15-170 (227)
40 TIGR02639 ClpA ATP-dependent C 99.1 1.7E-09 3.8E-14 96.0 14.7 152 23-200 180-358 (731)
41 PRK00149 dnaA chromosomal repl 99.1 3.4E-09 7.3E-14 89.3 15.5 169 25-216 123-311 (450)
42 PRK03992 proteasome-activating 99.1 4.9E-09 1.1E-13 86.6 15.3 170 22-215 128-331 (389)
43 COG0593 DnaA ATPase involved i 99.1 3.9E-09 8.4E-14 86.3 14.2 160 21-201 84-258 (408)
44 PRK13341 recombination factor 99.1 2E-09 4.3E-14 94.7 13.3 147 21-201 24-182 (725)
45 COG2909 MalT ATP-dependent tra 99.1 2.6E-09 5.7E-14 92.8 13.7 171 19-200 13-207 (894)
46 PRK12422 chromosomal replicati 99.1 6E-09 1.3E-13 87.2 15.5 159 22-202 109-286 (445)
47 PRK14086 dnaA chromosomal repl 99.1 5.5E-09 1.2E-13 89.4 15.2 157 23-202 287-461 (617)
48 PRK00080 ruvB Holliday junctio 99.1 9.3E-10 2E-14 89.0 10.2 55 21-75 21-77 (328)
49 PRK14962 DNA polymerase III su 99.1 4.6E-09 1E-13 88.4 14.6 182 21-215 10-206 (472)
50 TIGR00362 DnaA chromosomal rep 99.1 6.6E-09 1.4E-13 86.5 15.3 167 26-215 112-298 (405)
51 PRK14087 dnaA chromosomal repl 99.1 5.4E-09 1.2E-13 87.7 14.8 156 25-201 116-289 (450)
52 PRK14957 DNA polymerase III su 99.1 4.8E-09 1E-13 89.4 14.4 168 22-201 13-192 (546)
53 TIGR03345 VI_ClpV1 type VI sec 99.1 6.1E-09 1.3E-13 93.6 15.6 154 22-200 184-363 (852)
54 PRK12323 DNA polymerase III su 99.1 2.6E-09 5.7E-14 91.6 12.5 170 21-201 12-197 (700)
55 PRK06620 hypothetical protein; 99.1 1.2E-09 2.5E-14 83.0 9.3 139 20-201 12-161 (214)
56 PRK14963 DNA polymerase III su 99.1 6E-09 1.3E-13 88.4 14.5 167 22-201 11-189 (504)
57 TIGR02881 spore_V_K stage V sp 99.1 3.3E-09 7.1E-14 83.2 12.1 155 26-202 7-193 (261)
58 PRK07994 DNA polymerase III su 99.1 2.8E-09 6E-14 92.2 12.6 167 22-200 13-191 (647)
59 PRK14951 DNA polymerase III su 99.1 6.2E-09 1.3E-13 89.8 14.3 169 22-201 13-197 (618)
60 PRK08691 DNA polymerase III su 99.0 1E-09 2.2E-14 94.8 9.2 170 21-202 12-193 (709)
61 PRK06645 DNA polymerase III su 99.0 2.9E-09 6.3E-14 90.1 11.3 171 21-202 17-202 (507)
62 PF05496 RuvB_N: Holliday junc 99.0 3.1E-09 6.8E-14 79.8 9.9 58 20-77 19-78 (233)
63 TIGR02397 dnaX_nterm DNA polym 99.0 1.4E-08 2.9E-13 83.1 14.6 155 22-201 11-190 (355)
64 COG3899 Predicted ATPase [Gene 99.0 2.9E-09 6.3E-14 95.5 10.3 188 26-214 1-247 (849)
65 CHL00095 clpC Clp protease ATP 99.0 9.8E-09 2.1E-13 92.3 13.5 150 25-199 179-353 (821)
66 PRK14964 DNA polymerase III su 99.0 1.5E-08 3.3E-13 85.3 13.6 168 22-202 10-190 (491)
67 PRK14958 DNA polymerase III su 99.0 1.1E-08 2.4E-13 86.9 12.9 168 21-201 12-192 (509)
68 PRK10865 protein disaggregatio 99.0 2.2E-08 4.7E-13 90.3 15.2 153 23-201 176-355 (857)
69 TIGR03346 chaperone_ClpB ATP-d 99.0 2.6E-08 5.7E-13 89.9 15.3 153 23-201 171-350 (852)
70 PRK09112 DNA polymerase III su 99.0 1.9E-08 4.1E-13 81.8 12.9 175 19-200 17-213 (351)
71 PRK14969 DNA polymerase III su 99.0 1.5E-08 3.3E-13 86.6 12.8 168 22-201 13-192 (527)
72 PRK14970 DNA polymerase III su 98.9 3E-08 6.6E-13 81.5 14.1 156 22-201 14-181 (367)
73 KOG2543 Origin recognition com 98.9 2.7E-08 5.8E-13 79.6 13.0 173 22-202 3-195 (438)
74 PRK07764 DNA polymerase III su 98.9 1.1E-08 2.4E-13 91.1 11.9 166 22-200 12-192 (824)
75 PHA02544 44 clamp loader, smal 98.9 3.6E-08 7.7E-13 79.4 13.2 150 21-198 17-171 (316)
76 PRK14955 DNA polymerase III su 98.9 1.6E-08 3.6E-13 83.8 11.4 173 22-201 13-200 (397)
77 PRK14952 DNA polymerase III su 98.9 4.1E-08 8.9E-13 84.5 14.0 168 21-201 9-191 (584)
78 PRK05896 DNA polymerase III su 98.9 8.9E-09 1.9E-13 88.1 9.6 168 22-201 13-192 (605)
79 PRK07940 DNA polymerase III su 98.9 6.9E-08 1.5E-12 79.6 14.5 162 25-199 5-188 (394)
80 PRK14954 DNA polymerase III su 98.9 2.1E-08 4.4E-13 86.9 11.8 174 22-201 13-200 (620)
81 TIGR00678 holB DNA polymerase 98.9 1.1E-07 2.5E-12 70.7 14.4 69 131-199 95-167 (188)
82 PRK07471 DNA polymerase III su 98.9 1E-07 2.3E-12 77.9 15.2 176 19-200 13-213 (365)
83 PTZ00454 26S protease regulato 98.9 6.7E-08 1.5E-12 79.8 14.1 158 21-202 141-331 (398)
84 PRK11034 clpA ATP-dependent Cl 98.9 2.7E-08 5.9E-13 88.1 12.5 153 25-201 186-363 (758)
85 TIGR03689 pup_AAA proteasome A 98.9 6E-08 1.3E-12 82.0 13.7 162 22-202 179-380 (512)
86 PRK05564 DNA polymerase III su 98.9 1.1E-07 2.5E-12 76.4 14.3 152 25-200 4-165 (313)
87 TIGR02880 cbbX_cfxQ probable R 98.9 6.1E-08 1.3E-12 76.8 12.5 130 50-202 59-210 (284)
88 KOG0733 Nuclear AAA ATPase (VC 98.9 4E-08 8.7E-13 82.8 11.7 170 22-215 187-390 (802)
89 PRK14959 DNA polymerase III su 98.9 6.8E-08 1.5E-12 83.2 13.5 167 22-202 13-193 (624)
90 PRK09111 DNA polymerase III su 98.9 1.9E-08 4.2E-13 86.8 10.2 169 22-201 21-205 (598)
91 PF00004 AAA: ATPase family as 98.8 9.2E-08 2E-12 66.7 11.8 23 52-74 1-23 (132)
92 PRK14953 DNA polymerase III su 98.8 2.6E-07 5.6E-12 78.3 15.9 165 23-201 14-192 (486)
93 PRK06305 DNA polymerase III su 98.8 1.5E-07 3.2E-12 79.2 14.1 167 22-201 14-194 (451)
94 PTZ00361 26 proteosome regulat 98.8 7.7E-08 1.7E-12 80.1 12.2 157 23-203 181-370 (438)
95 COG1222 RPT1 ATP-dependent 26S 98.8 2E-07 4.4E-12 74.1 13.8 168 22-214 148-350 (406)
96 KOG2227 Pre-initiation complex 98.8 1.6E-07 3.5E-12 77.0 13.6 172 22-202 147-340 (529)
97 CHL00181 cbbX CbbX; Provisiona 98.8 1.7E-07 3.6E-12 74.4 13.5 132 49-202 59-211 (287)
98 PF14516 AAA_35: AAA-like doma 98.8 3.6E-07 7.7E-12 74.1 15.6 177 19-200 5-214 (331)
99 PRK07133 DNA polymerase III su 98.8 2E-07 4.4E-12 81.5 14.8 165 22-201 15-191 (725)
100 PRK05563 DNA polymerase III su 98.8 3.2E-07 7E-12 79.1 15.8 168 21-201 12-192 (559)
101 PF05673 DUF815: Protein of un 98.8 8.3E-08 1.8E-12 73.1 9.9 58 20-77 22-80 (249)
102 PRK08451 DNA polymerase III su 98.8 4.7E-07 1E-11 77.1 15.1 165 22-201 11-190 (535)
103 PRK14950 DNA polymerase III su 98.7 8.9E-08 1.9E-12 83.2 10.5 169 22-202 13-194 (585)
104 CHL00176 ftsH cell division pr 98.7 3.1E-07 6.8E-12 80.0 13.6 156 23-202 181-368 (638)
105 COG3267 ExeA Type II secretory 98.7 6.7E-07 1.5E-11 68.1 13.2 181 16-205 18-218 (269)
106 TIGR01241 FtsH_fam ATP-depende 98.7 2E-07 4.4E-12 79.6 11.2 170 22-215 52-254 (495)
107 TIGR01243 CDC48 AAA family ATP 98.7 5.9E-07 1.3E-11 80.2 14.5 156 23-202 176-361 (733)
108 PRK06647 DNA polymerase III su 98.7 8E-07 1.7E-11 76.6 14.6 167 22-201 13-192 (563)
109 PRK08181 transposase; Validate 98.7 1.6E-07 3.4E-12 73.6 9.4 34 50-83 107-140 (269)
110 PRK12377 putative replication 98.7 3.3E-07 7.1E-12 71.0 11.1 49 34-83 87-135 (248)
111 PRK14971 DNA polymerase III su 98.7 6.4E-07 1.4E-11 78.0 14.0 168 23-201 15-194 (614)
112 PRK08116 hypothetical protein; 98.7 1.7E-07 3.6E-12 73.7 9.2 35 49-83 114-148 (268)
113 COG0466 Lon ATP-dependent Lon 98.7 4.3E-07 9.4E-12 78.1 12.2 164 23-202 321-510 (782)
114 PRK14965 DNA polymerase III su 98.7 6.2E-07 1.4E-11 77.7 13.4 165 22-200 13-191 (576)
115 COG2812 DnaX DNA polymerase II 98.7 1.7E-07 3.6E-12 79.0 9.3 167 23-202 14-193 (515)
116 COG2255 RuvB Holliday junction 98.6 2.9E-07 6.4E-12 71.1 9.7 163 21-215 22-211 (332)
117 TIGR02903 spore_lon_C ATP-depe 98.6 6.5E-07 1.4E-11 78.1 13.1 50 21-73 150-199 (615)
118 PRK14948 DNA polymerase III su 98.6 3.1E-07 6.6E-12 80.0 10.8 169 22-201 13-194 (620)
119 KOG0730 AAA+-type ATPase [Post 98.6 3.6E-07 7.7E-12 77.8 10.3 170 22-215 431-631 (693)
120 KOG0989 Replication factor C, 98.6 6.2E-07 1.3E-11 70.0 10.5 175 22-214 33-217 (346)
121 TIGR02640 gas_vesic_GvpN gas v 98.6 1.4E-06 3.1E-11 68.3 12.5 25 49-73 21-45 (262)
122 TIGR02639 ClpA ATP-dependent C 98.6 1.9E-06 4E-11 77.0 14.7 51 24-74 453-509 (731)
123 TIGR00763 lon ATP-dependent pr 98.6 9E-07 2E-11 79.4 12.7 51 26-76 321-374 (775)
124 TIGR03346 chaperone_ClpB ATP-d 98.6 1.9E-06 4.2E-11 78.0 14.8 53 24-76 564-622 (852)
125 PRK08939 primosomal protein Dn 98.6 4.5E-07 9.7E-12 72.5 9.6 120 29-170 135-261 (306)
126 KOG0734 AAA+-type ATPase conta 98.6 9.3E-07 2E-11 73.8 11.5 149 31-203 313-487 (752)
127 COG1373 Predicted ATPase (AAA+ 98.6 1.1E-06 2.4E-11 72.9 12.1 117 51-194 39-161 (398)
128 PRK10865 protein disaggregatio 98.6 2.6E-06 5.7E-11 77.0 15.5 52 24-75 567-624 (857)
129 CHL00195 ycf46 Ycf46; Provisio 98.6 5E-06 1.1E-10 70.5 16.2 155 23-202 226-407 (489)
130 KOG2228 Origin recognition com 98.6 2.1E-06 4.4E-11 68.0 12.7 189 7-200 9-219 (408)
131 KOG1514 Origin recognition com 98.6 1.1E-06 2.5E-11 75.3 11.9 185 23-217 394-607 (767)
132 smart00382 AAA ATPases associa 98.6 3.8E-07 8.3E-12 63.8 7.9 34 50-83 3-36 (148)
133 cd01128 rho_factor Transcripti 98.6 8.7E-08 1.9E-12 74.2 4.8 94 47-143 14-114 (249)
134 TIGR01243 CDC48 AAA family ATP 98.5 3E-06 6.6E-11 75.7 14.7 167 25-215 453-651 (733)
135 PRK06835 DNA replication prote 98.5 3.8E-07 8.2E-12 73.5 8.1 46 37-83 172-217 (329)
136 PF10443 RNA12: RNA12 protein; 98.5 3.1E-06 6.7E-11 69.4 13.2 161 30-203 1-232 (431)
137 PRK06526 transposase; Provisio 98.5 2.5E-07 5.4E-12 72.0 6.7 34 49-82 98-131 (254)
138 PRK06921 hypothetical protein; 98.5 3.9E-07 8.4E-12 71.5 7.8 37 48-84 116-153 (266)
139 PLN00020 ribulose bisphosphate 98.5 6.1E-06 1.3E-10 66.7 14.1 30 47-76 146-175 (413)
140 PF07693 KAP_NTPase: KAP famil 98.5 9.4E-06 2E-10 65.6 15.6 77 30-107 1-80 (325)
141 PF01695 IstB_IS21: IstB-like 98.5 1.3E-07 2.9E-12 69.7 4.4 36 48-83 46-81 (178)
142 KOG2004 Mitochondrial ATP-depe 98.5 1.2E-06 2.7E-11 75.3 10.6 163 23-201 409-597 (906)
143 PRK07952 DNA replication prote 98.5 1.4E-06 3E-11 67.3 10.1 50 33-83 84-133 (244)
144 TIGR00602 rad24 checkpoint pro 98.5 3E-06 6.5E-11 73.7 13.0 53 21-73 80-134 (637)
145 PRK10536 hypothetical protein; 98.5 6.2E-07 1.4E-11 69.1 7.9 43 25-72 55-97 (262)
146 COG0542 clpA ATP-binding subun 98.5 1.6E-06 3.4E-11 76.2 11.1 121 23-156 489-619 (786)
147 KOG0741 AAA+-type ATPase [Post 98.5 2.9E-06 6.3E-11 70.9 11.7 130 47-199 536-685 (744)
148 PRK08058 DNA polymerase III su 98.5 5.9E-06 1.3E-10 66.9 13.5 161 26-199 6-181 (329)
149 TIGR02902 spore_lonB ATP-depen 98.5 1.7E-06 3.8E-11 74.3 10.9 48 22-72 62-109 (531)
150 PRK09183 transposase/IS protei 98.5 9.6E-07 2.1E-11 69.1 8.4 36 48-83 101-136 (259)
151 COG0542 clpA ATP-binding subun 98.5 8.1E-07 1.7E-11 78.0 8.7 156 23-202 168-348 (786)
152 PRK07399 DNA polymerase III su 98.5 1.1E-05 2.4E-10 64.8 14.6 167 25-200 4-195 (314)
153 PRK10787 DNA-binding ATP-depen 98.4 3.2E-06 6.9E-11 75.6 12.3 160 25-201 322-507 (784)
154 KOG0744 AAA+-type ATPase [Post 98.4 1.8E-06 3.8E-11 68.1 8.8 135 49-200 177-340 (423)
155 COG1484 DnaC DNA replication p 98.4 2E-06 4.4E-11 67.0 9.2 52 30-83 88-139 (254)
156 TIGR03345 VI_ClpV1 type VI sec 98.4 3.7E-06 8E-11 76.0 12.1 51 25-75 566-622 (852)
157 TIGR00767 rho transcription te 98.4 4.2E-07 9.2E-12 74.2 5.4 94 47-143 166-266 (415)
158 PRK11034 clpA ATP-dependent Cl 98.4 7.6E-06 1.7E-10 72.8 13.5 50 25-74 458-513 (758)
159 PRK05707 DNA polymerase III su 98.4 9.4E-06 2E-10 65.6 12.5 70 131-200 105-178 (328)
160 PF05621 TniB: Bacterial TniB 98.4 3.6E-06 7.9E-11 66.2 9.4 115 24-143 33-156 (302)
161 PF14532 Sigma54_activ_2: Sigm 98.3 5.2E-07 1.1E-11 63.8 4.0 45 28-73 1-45 (138)
162 TIGR01817 nifA Nif-specific re 98.3 1.2E-05 2.5E-10 69.5 12.6 51 22-73 193-243 (534)
163 KOG0733 Nuclear AAA ATPase (VC 98.3 1.1E-05 2.3E-10 68.6 11.7 143 49-215 545-710 (802)
164 KOG0739 AAA+-type ATPase [Post 98.3 5.3E-06 1.1E-10 64.8 9.0 52 25-76 133-193 (439)
165 PF13177 DNA_pol3_delta2: DNA 98.3 3.3E-06 7.2E-11 61.3 7.5 146 29-188 1-162 (162)
166 COG2607 Predicted ATPase (AAA+ 98.3 1.1E-05 2.5E-10 61.0 10.3 57 23-79 58-115 (287)
167 PRK09361 radB DNA repair and r 98.3 2.6E-06 5.7E-11 65.3 7.1 48 36-84 11-58 (225)
168 PRK09376 rho transcription ter 98.3 3.1E-06 6.7E-11 69.0 7.7 99 38-143 160-267 (416)
169 CHL00095 clpC Clp protease ATP 98.3 1E-05 2.2E-10 73.2 11.3 51 24-74 508-564 (821)
170 TIGR02974 phageshock_pspF psp 98.3 9.1E-06 2E-10 65.8 9.9 46 27-73 1-46 (329)
171 PRK11331 5-methylcytosine-spec 98.3 3.2E-06 7E-11 70.2 7.3 55 24-83 174-230 (459)
172 COG1223 Predicted ATPase (AAA+ 98.3 1.3E-05 2.7E-10 61.6 9.8 155 23-201 119-298 (368)
173 PRK11608 pspF phage shock prot 98.3 1.4E-05 3E-10 64.7 10.8 47 25-72 6-52 (326)
174 cd01394 radB RadB. The archaea 98.2 4.7E-06 1E-10 63.5 7.3 48 35-83 6-53 (218)
175 KOG0743 AAA+-type ATPase [Post 98.2 3E-05 6.5E-10 63.8 12.1 134 49-215 235-397 (457)
176 COG0470 HolB ATPase involved i 98.2 5.2E-05 1.1E-09 61.2 13.6 149 27-196 3-177 (325)
177 KOG0991 Replication factor C, 98.2 4.3E-06 9.4E-11 63.1 6.6 48 23-73 25-72 (333)
178 KOG0728 26S proteasome regulat 98.2 6.1E-05 1.3E-09 57.6 12.8 156 20-200 141-331 (404)
179 KOG0731 AAA+-type ATPase conta 98.2 1.5E-05 3.4E-10 69.8 10.5 156 25-204 311-499 (774)
180 PF00158 Sigma54_activat: Sigm 98.2 1.2E-05 2.6E-10 58.7 8.3 46 27-73 1-46 (168)
181 PF13604 AAA_30: AAA domain; P 98.2 1.4E-05 2.9E-10 60.0 8.8 114 34-170 7-131 (196)
182 PHA00729 NTP-binding motif con 98.2 1.3E-05 2.7E-10 60.9 8.6 26 49-74 17-42 (226)
183 TIGR02237 recomb_radB DNA repa 98.2 3.1E-06 6.7E-11 64.1 5.3 39 47-85 10-48 (209)
184 PF07728 AAA_5: AAA domain (dy 98.2 1.4E-06 3.1E-11 61.5 3.3 22 52-73 2-23 (139)
185 PRK10733 hflB ATP-dependent me 98.2 3E-05 6.5E-10 68.3 12.1 154 26-203 153-338 (644)
186 smart00763 AAA_PrkA PrkA AAA d 98.2 3.3E-06 7.2E-11 68.2 5.4 52 24-75 50-104 (361)
187 PRK06067 flagellar accessory p 98.2 1E-05 2.2E-10 62.4 7.9 49 35-84 12-60 (234)
188 cd01393 recA_like RecA is a b 98.2 1.2E-05 2.5E-10 61.6 8.2 48 36-84 7-60 (226)
189 PRK04296 thymidine kinase; Pro 98.2 3.1E-06 6.7E-11 63.2 4.7 112 50-171 3-117 (190)
190 COG0464 SpoVK ATPases of the A 98.2 1.8E-05 3.9E-10 67.8 9.9 132 47-202 274-425 (494)
191 PTZ00494 tuzin-like protein; P 98.1 6E-05 1.3E-09 62.4 12.2 164 22-200 368-544 (664)
192 TIGR03877 thermo_KaiC_1 KaiC d 98.1 2.2E-05 4.8E-10 60.7 9.4 49 35-84 8-56 (237)
193 PRK12608 transcription termina 98.1 9.9E-06 2.1E-10 65.9 7.4 105 33-142 119-230 (380)
194 cd01120 RecA-like_NTPases RecA 98.1 1E-05 2.2E-10 58.2 6.9 32 52-83 2-33 (165)
195 PRK06871 DNA polymerase III su 98.1 0.0001 2.3E-09 59.3 13.1 155 31-200 8-179 (325)
196 PRK08769 DNA polymerase III su 98.1 0.00024 5.2E-09 57.2 15.1 162 29-199 8-184 (319)
197 PRK05022 anaerobic nitric oxid 98.1 2.9E-05 6.4E-10 66.6 10.6 51 23-74 185-235 (509)
198 COG1066 Sms Predicted ATP-depe 98.1 2.5E-05 5.4E-10 63.6 9.1 54 32-88 77-130 (456)
199 PRK06696 uridine kinase; Valid 98.1 7.4E-06 1.6E-10 62.7 5.9 48 29-76 2-49 (223)
200 cd01131 PilT Pilus retraction 98.1 3.5E-05 7.5E-10 57.9 9.3 111 50-173 2-112 (198)
201 PRK10820 DNA-binding transcrip 98.1 4.8E-05 1E-09 65.4 11.2 50 22-72 201-250 (520)
202 cd01123 Rad51_DMC1_radA Rad51_ 98.1 1.3E-05 2.9E-10 61.7 7.0 50 37-88 8-63 (235)
203 PRK15429 formate hydrogenlyase 98.1 4.1E-05 8.9E-10 68.1 10.8 52 22-74 373-424 (686)
204 PRK04328 hypothetical protein; 98.1 3.3E-05 7.2E-10 60.1 9.0 48 36-84 11-58 (249)
205 PRK07993 DNA polymerase III su 98.1 0.00025 5.5E-09 57.5 14.2 155 30-199 7-179 (334)
206 KOG0652 26S proteasome regulat 98.0 0.00016 3.6E-09 55.7 12.2 54 23-76 169-232 (424)
207 TIGR02012 tigrfam_recA protein 98.0 2.1E-05 4.6E-10 63.0 7.7 103 33-142 39-143 (321)
208 cd00983 recA RecA is a bacter 98.0 2.1E-05 4.5E-10 63.1 7.6 100 33-142 39-143 (325)
209 PF02562 PhoH: PhoH-like prote 98.0 3.3E-06 7.1E-11 63.3 2.7 128 30-170 5-156 (205)
210 cd01133 F1-ATPase_beta F1 ATP 98.0 3.4E-05 7.5E-10 60.3 8.3 94 47-143 67-174 (274)
211 cd01129 PulE-GspE PulE/GspE Th 98.0 5.3E-05 1.1E-09 59.5 9.4 104 30-151 65-168 (264)
212 PRK09354 recA recombinase A; P 98.0 2.7E-05 5.9E-10 63.0 7.9 103 33-142 44-148 (349)
213 KOG0726 26S proteasome regulat 98.0 1.9E-05 4.2E-10 61.6 6.6 57 20-76 180-246 (440)
214 cd01121 Sms Sms (bacterial rad 98.0 3.5E-05 7.6E-10 63.3 8.6 49 34-83 68-116 (372)
215 KOG0736 Peroxisome assembly fa 98.0 0.00019 4.2E-09 62.7 13.1 95 26-144 673-776 (953)
216 PF13207 AAA_17: AAA domain; P 98.0 6.8E-06 1.5E-10 56.5 3.5 23 51-73 1-23 (121)
217 PF04665 Pox_A32: Poxvirus A32 98.0 6.8E-06 1.5E-10 63.0 3.7 33 51-83 15-47 (241)
218 PRK06964 DNA polymerase III su 98.0 0.00052 1.1E-08 55.8 14.6 69 131-199 131-203 (342)
219 PF00448 SRP54: SRP54-type pro 98.0 4.4E-05 9.6E-10 57.2 7.9 35 49-83 1-35 (196)
220 PRK14974 cell division protein 98.0 0.00021 4.6E-09 57.9 12.2 29 48-76 139-167 (336)
221 KOG0735 AAA+-type ATPase [Post 98.0 2.4E-05 5.3E-10 67.6 7.1 132 47-201 429-587 (952)
222 PRK00771 signal recognition pa 98.0 0.00017 3.8E-09 60.4 11.9 36 48-83 94-129 (437)
223 PRK11889 flhF flagellar biosyn 98.0 9.8E-05 2.1E-09 60.6 10.1 36 48-83 240-275 (436)
224 KOG0727 26S proteasome regulat 97.9 3.1E-05 6.8E-10 59.3 6.7 94 26-143 156-259 (408)
225 cd00561 CobA_CobO_BtuR ATP:cor 97.9 3.7E-05 7.9E-10 55.4 6.7 35 50-84 3-37 (159)
226 PRK15455 PrkA family serine pr 97.9 1.2E-05 2.7E-10 68.5 4.9 50 26-76 77-130 (644)
227 PRK06090 DNA polymerase III su 97.9 0.00069 1.5E-08 54.5 14.5 153 31-199 9-179 (319)
228 COG1618 Predicted nucleotide k 97.9 1.3E-05 2.7E-10 57.1 4.0 35 49-83 5-40 (179)
229 PF00437 T2SE: Type II/IV secr 97.9 3.5E-05 7.6E-10 60.7 7.0 158 23-199 102-260 (270)
230 PRK05342 clpX ATP-dependent pr 97.9 2.7E-05 5.9E-10 64.7 6.6 52 25-76 71-135 (412)
231 PF12775 AAA_7: P-loop contain 97.9 1.6E-05 3.6E-10 62.6 5.0 27 49-75 33-59 (272)
232 COG4088 Predicted nucleotide k 97.9 9.7E-05 2.1E-09 54.9 8.5 136 50-203 2-142 (261)
233 KOG0738 AAA+-type ATPase [Post 97.9 9.2E-05 2E-09 60.0 9.1 52 23-74 210-270 (491)
234 PF03969 AFG1_ATPase: AFG1-lik 97.9 5.4E-05 1.2E-09 61.9 7.9 103 47-170 60-167 (362)
235 PRK11823 DNA repair protein Ra 97.9 7.1E-05 1.5E-09 63.1 8.9 50 33-83 65-114 (446)
236 PRK08699 DNA polymerase III su 97.9 0.00028 6E-09 57.1 11.9 69 131-199 112-184 (325)
237 PF06068 TIP49: TIP49 C-termin 97.9 8.8E-05 1.9E-09 60.0 8.7 83 22-107 21-106 (398)
238 TIGR01420 pilT_fam pilus retra 97.9 0.00012 2.6E-09 59.7 9.6 108 49-170 122-230 (343)
239 TIGR02858 spore_III_AA stage I 97.9 0.0001 2.2E-09 57.9 8.8 115 49-174 111-233 (270)
240 PRK04132 replication factor C 97.9 0.0003 6.6E-09 63.2 12.7 128 54-201 569-703 (846)
241 PF06309 Torsin: Torsin; Inte 97.9 3.4E-05 7.4E-10 52.9 5.3 48 26-73 26-77 (127)
242 TIGR03878 thermo_KaiC_2 KaiC d 97.9 8.9E-05 1.9E-09 58.1 8.3 38 47-84 34-71 (259)
243 COG2884 FtsE Predicted ATPase 97.9 0.00012 2.7E-09 53.7 8.1 56 122-177 145-204 (223)
244 PF01583 APS_kinase: Adenylyls 97.9 2.8E-05 6.1E-10 55.7 4.8 35 49-83 2-36 (156)
245 PF10236 DAP3: Mitochondrial r 97.9 0.00028 6.1E-09 56.7 11.1 26 47-72 21-46 (309)
246 TIGR00416 sms DNA repair prote 97.9 9.8E-05 2.1E-09 62.3 8.8 50 33-83 79-128 (454)
247 PRK11388 DNA-binding transcrip 97.9 0.00015 3.3E-09 64.1 10.3 50 23-73 323-372 (638)
248 COG4608 AppF ABC-type oligopep 97.9 7.2E-05 1.6E-09 57.9 7.3 127 47-176 37-176 (268)
249 KOG0737 AAA+-type ATPase [Post 97.8 0.00025 5.4E-09 57.0 10.4 56 26-81 93-159 (386)
250 KOG1969 DNA replication checkp 97.8 6E-05 1.3E-09 65.4 7.3 26 47-72 324-349 (877)
251 COG3903 Predicted ATPase [Gene 97.8 5.4E-06 1.2E-10 67.3 0.9 158 47-216 12-178 (414)
252 PRK13531 regulatory ATPase Rav 97.8 3.8E-05 8.2E-10 64.5 5.8 48 23-75 18-65 (498)
253 TIGR02655 circ_KaiC circadian 97.8 5.9E-05 1.3E-09 64.3 7.1 52 32-84 247-298 (484)
254 COG0465 HflB ATP-dependent Zn 97.8 0.00019 4.2E-09 61.7 10.1 158 22-203 147-336 (596)
255 PRK12724 flagellar biosynthesi 97.8 0.00016 3.6E-09 59.8 9.4 25 49-73 223-247 (432)
256 TIGR00064 ftsY signal recognit 97.8 0.0003 6.4E-09 55.5 10.5 37 47-83 70-106 (272)
257 PRK13695 putative NTPase; Prov 97.8 0.00013 2.9E-09 53.5 7.8 24 51-74 2-25 (174)
258 cd03115 SRP The signal recogni 97.8 0.00021 4.5E-09 52.4 8.8 33 51-83 2-34 (173)
259 CHL00206 ycf2 Ycf2; Provisiona 97.8 0.00025 5.5E-09 67.8 11.1 29 47-75 1628-1656(2281)
260 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 0.00027 5.8E-09 52.3 9.4 23 51-73 1-23 (183)
261 PF00910 RNA_helicase: RNA hel 97.8 1.4E-05 3E-10 53.9 2.2 25 52-76 1-25 (107)
262 cd03228 ABCC_MRP_Like The MRP 97.8 0.00023 4.9E-09 52.2 8.8 27 47-73 26-52 (171)
263 cd02027 APSK Adenosine 5'-phos 97.8 0.00019 4.1E-09 51.4 8.2 24 51-74 1-24 (149)
264 PF03215 Rad17: Rad17 cell cyc 97.8 3.2E-05 6.9E-10 66.1 4.7 60 22-83 16-77 (519)
265 cd01124 KaiC KaiC is a circadi 97.8 6.8E-05 1.5E-09 55.5 6.0 32 52-83 2-33 (187)
266 KOG2170 ATPase of the AAA+ sup 97.8 0.00056 1.2E-08 53.7 11.0 46 30-75 91-136 (344)
267 PRK05703 flhF flagellar biosyn 97.8 0.00087 1.9E-08 56.2 13.0 35 49-83 221-257 (424)
268 cd03214 ABC_Iron-Siderophores_ 97.8 0.00018 3.9E-09 53.1 8.1 36 47-83 23-58 (180)
269 TIGR03499 FlhF flagellar biosy 97.8 0.00019 4.2E-09 56.9 8.7 28 48-75 193-220 (282)
270 KOG0729 26S proteasome regulat 97.8 9E-05 1.9E-09 57.3 6.4 53 24-76 176-238 (435)
271 PF07724 AAA_2: AAA domain (Cd 97.8 7.8E-05 1.7E-09 54.6 5.9 38 50-88 4-42 (171)
272 PRK14722 flhF flagellar biosyn 97.7 0.0005 1.1E-08 56.4 11.1 28 47-74 135-162 (374)
273 COG1124 DppF ABC-type dipeptid 97.7 0.00025 5.5E-09 54.0 8.5 25 47-71 31-55 (252)
274 COG1419 FlhF Flagellar GTP-bin 97.7 0.00038 8.3E-09 57.0 10.1 88 48-142 202-291 (407)
275 TIGR00382 clpX endopeptidase C 97.7 0.00012 2.5E-09 60.9 7.3 53 24-76 76-143 (413)
276 PRK05541 adenylylsulfate kinas 97.7 4.8E-05 1E-09 56.0 4.5 37 47-83 5-41 (176)
277 TIGR02238 recomb_DMC1 meiotic 97.7 6.4E-05 1.4E-09 60.4 5.5 56 34-91 82-143 (313)
278 TIGR00708 cobA cob(I)alamin ad 97.7 0.00019 4.2E-09 52.3 7.5 118 49-170 5-140 (173)
279 PRK12726 flagellar biosynthesi 97.7 0.00029 6.3E-09 57.6 9.2 91 47-142 204-295 (407)
280 PRK12723 flagellar biosynthesi 97.7 0.00056 1.2E-08 56.5 10.9 27 48-74 173-199 (388)
281 cd03247 ABCC_cytochrome_bd The 97.7 0.00032 6.9E-09 51.7 8.7 27 47-73 26-52 (178)
282 TIGR00390 hslU ATP-dependent p 97.7 0.00015 3.2E-09 59.9 7.5 54 24-77 11-75 (441)
283 KOG0735 AAA+-type ATPase [Post 97.7 0.00047 1E-08 60.0 10.7 129 49-201 701-849 (952)
284 cd03238 ABC_UvrA The excision 97.7 0.00019 4E-09 52.9 7.3 24 47-70 19-42 (176)
285 PRK04301 radA DNA repair and r 97.7 0.00015 3.3E-09 58.5 7.4 55 34-90 88-148 (317)
286 PF13238 AAA_18: AAA domain; P 97.7 3.5E-05 7.5E-10 53.3 3.2 22 52-73 1-22 (129)
287 COG1875 NYN ribonuclease and A 97.7 0.00019 4.2E-09 57.7 7.6 38 30-70 229-266 (436)
288 COG0468 RecA RecA/RadA recombi 97.7 0.00017 3.6E-09 56.8 7.2 90 47-142 58-151 (279)
289 PRK05986 cob(I)alamin adenolsy 97.7 0.00011 2.3E-09 54.4 5.8 121 48-171 21-159 (191)
290 COG1224 TIP49 DNA helicase TIP 97.7 0.00024 5.2E-09 57.0 8.0 83 22-107 36-121 (450)
291 PRK07667 uridine kinase; Provi 97.7 0.00014 3.1E-09 54.3 6.5 41 35-76 4-44 (193)
292 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00029 6.2E-09 53.6 8.2 23 49-71 29-51 (213)
293 KOG0730 AAA+-type ATPase [Post 97.7 0.00022 4.8E-09 61.3 8.1 168 26-217 185-382 (693)
294 COG1136 SalX ABC-type antimicr 97.7 0.0003 6.5E-09 53.5 8.1 58 119-177 147-210 (226)
295 PF09848 DUF2075: Uncharacteri 97.7 0.00025 5.3E-09 58.2 8.3 35 50-84 2-38 (352)
296 PLN03187 meiotic recombination 97.7 9.4E-05 2E-09 60.0 5.7 54 36-91 114-173 (344)
297 PF03266 NTPase_1: NTPase; In 97.7 6E-05 1.3E-09 55.0 4.2 24 52-75 2-25 (168)
298 PRK08118 topology modulation p 97.7 4.4E-05 9.6E-10 55.7 3.5 24 51-74 3-26 (167)
299 TIGR01650 PD_CobS cobaltochela 97.7 0.00011 2.4E-09 58.9 5.9 54 19-77 39-92 (327)
300 cd01130 VirB11-like_ATPase Typ 97.7 7.7E-05 1.7E-09 55.5 4.7 109 49-170 25-135 (186)
301 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00023 5.1E-09 52.4 7.1 27 47-73 23-49 (177)
302 PF08423 Rad51: Rad51; InterP 97.6 0.0001 2.2E-09 57.6 5.5 54 36-91 26-85 (256)
303 cd01122 GP4d_helicase GP4d_hel 97.6 0.00067 1.4E-08 53.4 10.1 37 47-83 28-65 (271)
304 PRK05800 cobU adenosylcobinami 97.6 0.00014 3.1E-09 53.2 5.8 82 50-141 2-85 (170)
305 PTZ00035 Rad51 protein; Provis 97.6 0.00027 5.8E-09 57.5 7.8 39 34-73 104-142 (337)
306 TIGR02236 recomb_radA DNA repa 97.6 0.00029 6.2E-09 56.7 8.0 54 35-90 82-141 (310)
307 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00011 2.3E-09 51.4 4.7 40 33-73 7-46 (133)
308 cd00984 DnaB_C DnaB helicase C 97.6 0.00043 9.4E-09 53.5 8.7 38 47-84 11-49 (242)
309 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00012 2.5E-09 59.1 5.5 53 24-76 60-115 (358)
310 TIGR02533 type_II_gspE general 97.6 0.0004 8.7E-09 59.2 9.0 101 31-149 228-328 (486)
311 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00025 5.4E-09 51.7 6.7 27 47-73 25-51 (166)
312 PF13671 AAA_33: AAA domain; P 97.6 5.7E-05 1.2E-09 53.4 3.3 24 51-74 1-24 (143)
313 COG5635 Predicted NTPase (NACH 97.6 0.00019 4.1E-09 65.1 7.3 140 49-197 222-375 (824)
314 PF07726 AAA_3: ATPase family 97.6 5.2E-05 1.1E-09 52.2 2.8 29 52-80 2-30 (131)
315 PF00625 Guanylate_kin: Guanyl 97.6 9.6E-05 2.1E-09 54.8 4.4 35 49-83 2-36 (183)
316 PF13086 AAA_11: AAA domain; P 97.6 0.00037 8E-09 53.2 7.8 36 33-73 6-41 (236)
317 PRK09302 circadian clock prote 97.6 0.00041 8.8E-09 59.7 8.7 52 31-83 14-66 (509)
318 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00032 6.9E-09 49.9 6.8 27 47-73 24-50 (144)
319 cd03282 ABC_MSH4_euk MutS4 hom 97.6 0.00038 8.2E-09 52.5 7.5 24 48-71 28-51 (204)
320 PHA02244 ATPase-like protein 97.6 8.4E-05 1.8E-09 60.4 4.1 50 22-76 93-146 (383)
321 TIGR02768 TraA_Ti Ti-type conj 97.6 0.00076 1.6E-08 60.5 10.5 27 50-76 369-395 (744)
322 KOG0740 AAA+-type ATPase [Post 97.6 0.0011 2.4E-08 54.9 10.6 30 47-76 184-213 (428)
323 PRK10867 signal recognition pa 97.6 0.00069 1.5E-08 56.7 9.6 29 48-76 99-127 (433)
324 KOG0742 AAA+-type ATPase [Post 97.6 0.00039 8.4E-09 56.9 7.8 27 47-73 382-408 (630)
325 cd00227 CPT Chloramphenicol (C 97.6 8.5E-05 1.8E-09 54.6 3.8 26 49-74 2-27 (175)
326 PRK06762 hypothetical protein; 97.6 8.3E-05 1.8E-09 54.1 3.7 25 49-73 2-26 (166)
327 PRK07261 topology modulation p 97.6 6.7E-05 1.4E-09 55.0 3.2 23 51-73 2-24 (171)
328 KOG1051 Chaperone HSP104 and r 97.6 0.0012 2.7E-08 59.3 11.5 106 24-144 561-672 (898)
329 PRK13765 ATP-dependent proteas 97.6 0.00014 3.1E-09 63.6 5.6 63 18-85 24-87 (637)
330 TIGR02782 TrbB_P P-type conjug 97.6 0.00074 1.6E-08 54.0 9.3 88 50-150 133-222 (299)
331 PRK08233 hypothetical protein; 97.6 8.9E-05 1.9E-09 54.7 3.8 26 49-74 3-28 (182)
332 PF13245 AAA_19: Part of AAA d 97.5 0.00024 5.1E-09 44.7 5.1 22 50-71 11-32 (76)
333 PF05970 PIF1: PIF1-like helic 97.5 0.00027 5.8E-09 58.2 6.9 37 47-83 20-56 (364)
334 cd03216 ABC_Carb_Monos_I This 97.5 0.00011 2.4E-09 53.4 4.1 117 47-174 24-146 (163)
335 cd03230 ABC_DR_subfamily_A Thi 97.5 0.0005 1.1E-08 50.4 7.7 27 47-73 24-50 (173)
336 PF03308 ArgK: ArgK protein; 97.5 0.00032 6.9E-09 54.2 6.6 49 34-83 15-63 (266)
337 PRK00131 aroK shikimate kinase 97.5 9.9E-05 2.1E-09 53.9 3.9 25 49-73 4-28 (175)
338 PRK09270 nucleoside triphospha 97.5 0.00017 3.7E-09 55.4 5.3 30 47-76 31-60 (229)
339 TIGR00764 lon_rel lon-related 97.5 0.0002 4.4E-09 62.6 6.2 64 18-86 11-75 (608)
340 PF08433 KTI12: Chromatin asso 97.5 0.00025 5.3E-09 55.8 6.1 34 50-83 2-35 (270)
341 PRK05201 hslU ATP-dependent pr 97.5 0.00034 7.3E-09 57.9 6.9 54 24-77 14-78 (443)
342 cd02019 NK Nucleoside/nucleoti 97.5 0.0001 2.2E-09 45.4 3.0 23 51-73 1-23 (69)
343 TIGR01818 ntrC nitrogen regula 97.5 0.00098 2.1E-08 56.6 10.1 48 25-73 134-181 (463)
344 PF00485 PRK: Phosphoribulokin 97.5 0.00011 2.3E-09 55.1 3.7 26 51-76 1-26 (194)
345 TIGR02524 dot_icm_DotB Dot/Icm 97.5 0.00072 1.6E-08 55.4 8.8 95 48-150 133-230 (358)
346 PTZ00088 adenylate kinase 1; P 97.5 0.00026 5.6E-09 54.4 5.8 23 51-73 8-30 (229)
347 PRK14528 adenylate kinase; Pro 97.5 0.00058 1.3E-08 50.7 7.6 24 50-73 2-25 (186)
348 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00088 1.9E-08 51.8 8.7 53 121-175 146-204 (254)
349 PF00406 ADK: Adenylate kinase 97.5 0.00021 4.6E-09 51.1 5.1 20 54-73 1-20 (151)
350 PRK04040 adenylate kinase; Pro 97.5 0.00013 2.8E-09 54.3 4.0 25 50-74 3-27 (188)
351 cd00046 DEXDc DEAD-like helica 97.5 0.00094 2E-08 46.2 8.2 33 51-83 2-36 (144)
352 TIGR00455 apsK adenylylsulfate 97.5 0.00073 1.6E-08 50.0 8.0 29 47-75 16-44 (184)
353 PF03193 DUF258: Protein of un 97.5 0.0002 4.3E-09 51.6 4.7 36 31-72 23-58 (161)
354 TIGR00235 udk uridine kinase. 97.5 0.00014 3E-09 55.0 4.1 28 47-74 4-31 (207)
355 PRK00279 adk adenylate kinase; 97.5 0.00062 1.3E-08 51.8 7.7 23 51-73 2-24 (215)
356 PRK05480 uridine/cytidine kina 97.5 0.00013 2.9E-09 55.2 4.0 27 47-73 4-30 (209)
357 COG0563 Adk Adenylate kinase a 97.5 0.0002 4.3E-09 52.8 4.8 23 51-73 2-24 (178)
358 COG4240 Predicted kinase [Gene 97.5 0.0006 1.3E-08 51.5 7.2 31 47-77 48-78 (300)
359 PRK10436 hypothetical protein; 97.5 0.00098 2.1E-08 56.4 9.4 100 31-148 204-303 (462)
360 COG1117 PstB ABC-type phosphat 97.5 0.0012 2.5E-08 49.6 8.6 43 24-71 13-55 (253)
361 PRK06547 hypothetical protein; 97.5 0.00024 5.3E-09 52.1 5.1 27 47-73 13-39 (172)
362 COG2804 PulE Type II secretory 97.5 0.0016 3.4E-08 54.8 10.3 116 31-169 244-360 (500)
363 COG0529 CysC Adenylylsulfate k 97.5 0.00034 7.4E-09 50.7 5.6 35 47-81 21-55 (197)
364 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00031 6.7E-09 54.7 5.9 25 52-76 2-26 (249)
365 PF00154 RecA: recA bacterial 97.5 0.00057 1.2E-08 54.8 7.4 105 33-143 37-142 (322)
366 PRK09519 recA DNA recombinatio 97.5 0.00048 1E-08 61.4 7.6 106 31-142 42-148 (790)
367 PF13481 AAA_25: AAA domain; P 97.5 0.00016 3.5E-09 53.8 4.1 27 48-74 31-57 (193)
368 cd03243 ABC_MutS_homologs The 97.5 0.00035 7.7E-09 52.6 6.0 23 49-71 29-51 (202)
369 PRK03839 putative kinase; Prov 97.5 0.00013 2.9E-09 53.8 3.6 24 51-74 2-25 (180)
370 COG2274 SunT ABC-type bacterio 97.5 0.00042 9.2E-09 61.5 7.2 25 47-71 497-521 (709)
371 KOG2035 Replication factor C, 97.5 0.0025 5.5E-08 49.6 10.5 174 26-215 14-216 (351)
372 PLN03186 DNA repair protein RA 97.4 0.00056 1.2E-08 55.6 7.4 56 34-91 109-170 (342)
373 COG0194 Gmk Guanylate kinase [ 97.4 0.00021 4.5E-09 52.3 4.4 26 48-73 3-28 (191)
374 PF00006 ATP-synt_ab: ATP synt 97.4 0.00079 1.7E-08 51.1 7.7 38 48-88 14-51 (215)
375 PRK06851 hypothetical protein; 97.4 0.00043 9.4E-09 56.6 6.6 39 49-87 214-252 (367)
376 KOG0651 26S proteasome regulat 97.4 0.0006 1.3E-08 53.8 7.1 30 47-76 164-193 (388)
377 TIGR02525 plasmid_TraJ plasmid 97.4 0.0003 6.4E-09 57.8 5.7 94 49-151 149-244 (372)
378 TIGR00959 ffh signal recogniti 97.4 0.0013 2.9E-08 55.0 9.6 26 49-74 99-124 (428)
379 PRK07132 DNA polymerase III su 97.4 0.0052 1.1E-07 49.1 12.5 143 34-199 5-161 (299)
380 PRK14531 adenylate kinase; Pro 97.4 0.00072 1.6E-08 50.1 7.2 24 50-73 3-26 (183)
381 PRK09280 F0F1 ATP synthase sub 97.4 0.0009 1.9E-08 56.2 8.4 93 47-142 142-248 (463)
382 cd03232 ABC_PDR_domain2 The pl 97.4 0.00091 2E-08 49.9 7.7 26 47-72 31-56 (192)
383 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00017 3.6E-09 53.5 3.7 25 49-73 3-27 (188)
384 COG0714 MoxR-like ATPases [Gen 97.4 0.00026 5.7E-09 57.4 5.0 48 25-77 24-71 (329)
385 PRK06731 flhF flagellar biosyn 97.4 0.001 2.2E-08 52.3 8.1 36 48-83 74-109 (270)
386 PRK05917 DNA polymerase III su 97.4 0.012 2.6E-07 46.6 14.1 67 131-197 94-169 (290)
387 TIGR02239 recomb_RAD51 DNA rep 97.4 0.00048 1E-08 55.5 6.4 38 34-72 82-119 (316)
388 PRK12597 F0F1 ATP synthase sub 97.4 0.001 2.2E-08 56.1 8.4 92 47-142 141-247 (461)
389 COG0467 RAD55 RecA-superfamily 97.4 0.00077 1.7E-08 52.8 7.4 41 47-88 21-61 (260)
390 PRK00889 adenylylsulfate kinas 97.4 0.00029 6.2E-09 51.8 4.7 29 48-76 3-31 (175)
391 PRK05973 replicative DNA helic 97.4 0.00057 1.2E-08 52.6 6.5 37 47-83 62-98 (237)
392 PRK14529 adenylate kinase; Pro 97.4 0.0013 2.8E-08 50.2 8.3 23 52-74 3-25 (223)
393 cd00071 GMPK Guanosine monopho 97.4 0.00014 3E-09 51.3 2.9 26 51-76 1-26 (137)
394 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.00082 1.8E-08 51.6 7.4 49 35-84 7-55 (229)
395 PF06745 KaiC: KaiC; InterPro 97.4 0.00021 4.6E-09 54.7 4.1 47 37-84 8-55 (226)
396 cd01428 ADK Adenylate kinase ( 97.4 0.0021 4.5E-08 47.8 9.4 22 52-73 2-23 (194)
397 PTZ00301 uridine kinase; Provi 97.4 0.00031 6.7E-09 53.2 4.9 25 50-74 4-28 (210)
398 cd01125 repA Hexameric Replica 97.4 0.0028 6E-08 49.1 10.3 23 51-73 3-25 (239)
399 PRK14737 gmk guanylate kinase; 97.4 0.00019 4E-09 53.4 3.6 26 48-73 3-28 (186)
400 smart00534 MUTSac ATPase domai 97.4 0.00044 9.6E-09 51.3 5.6 21 51-71 1-21 (185)
401 TIGR01039 atpD ATP synthase, F 97.4 0.0011 2.5E-08 55.5 8.4 93 47-143 141-248 (461)
402 PRK15115 response regulator Gl 97.4 0.0026 5.6E-08 53.8 10.8 48 25-73 134-181 (444)
403 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00043 9.3E-09 49.9 5.3 117 48-176 24-146 (157)
404 PRK14738 gmk guanylate kinase; 97.4 0.00022 4.8E-09 53.9 3.9 26 47-72 11-36 (206)
405 PRK03846 adenylylsulfate kinas 97.4 0.00038 8.2E-09 52.3 5.1 37 47-83 22-58 (198)
406 TIGR01351 adk adenylate kinase 97.4 0.00063 1.4E-08 51.5 6.3 22 52-73 2-23 (210)
407 KOG0924 mRNA splicing factor A 97.4 0.0022 4.7E-08 55.7 9.9 135 48-187 370-530 (1042)
408 TIGR02322 phosphon_PhnN phosph 97.3 0.0002 4.2E-09 52.8 3.4 25 50-74 2-26 (179)
409 COG1116 TauB ABC-type nitrate/ 97.3 0.00019 4.2E-09 54.9 3.4 25 47-71 27-51 (248)
410 TIGR02788 VirB11 P-type DNA tr 97.3 0.0015 3.2E-08 52.6 8.6 112 48-172 143-255 (308)
411 KOG0736 Peroxisome assembly fa 97.3 0.0058 1.3E-07 53.9 12.5 50 27-76 403-458 (953)
412 cd03233 ABC_PDR_domain1 The pl 97.3 0.0015 3.3E-08 49.2 8.2 28 47-74 31-58 (202)
413 smart00072 GuKc Guanylate kina 97.3 0.00024 5.1E-09 52.7 3.7 30 49-78 2-31 (184)
414 PRK10416 signal recognition pa 97.3 0.0014 3E-08 52.9 8.2 36 48-83 113-148 (318)
415 COG4615 PvdE ABC-type sideroph 97.3 0.0025 5.5E-08 52.1 9.4 140 47-190 347-535 (546)
416 TIGR02538 type_IV_pilB type IV 97.3 0.0017 3.6E-08 56.6 9.2 102 30-149 301-402 (564)
417 PRK05439 pantothenate kinase; 97.3 0.00047 1E-08 55.2 5.3 28 47-74 84-111 (311)
418 COG4618 ArpD ABC-type protease 97.3 0.0008 1.7E-08 56.5 6.8 24 48-71 361-384 (580)
419 PRK05537 bifunctional sulfate 97.3 0.00062 1.3E-08 59.1 6.4 52 23-75 367-418 (568)
420 PRK12727 flagellar biosynthesi 97.3 0.0014 3.1E-08 55.9 8.3 29 47-75 348-376 (559)
421 PRK00300 gmk guanylate kinase; 97.3 0.00024 5.2E-09 53.5 3.5 27 48-74 4-30 (205)
422 cd03213 ABCG_EPDR ABCG transpo 97.3 0.0015 3.3E-08 48.8 7.8 27 47-73 33-59 (194)
423 cd02028 UMPK_like Uridine mono 97.3 0.00033 7.2E-09 51.7 4.2 25 51-75 1-25 (179)
424 PRK14526 adenylate kinase; Pro 97.3 0.0016 3.5E-08 49.4 8.0 22 52-73 3-24 (211)
425 KOG1942 DNA helicase, TBP-inte 97.3 0.00043 9.4E-09 54.3 4.8 59 22-81 35-96 (456)
426 PRK15453 phosphoribulokinase; 97.3 0.0012 2.7E-08 51.8 7.3 28 48-75 4-31 (290)
427 TIGR01448 recD_rel helicase, p 97.3 0.00097 2.1E-08 59.6 7.7 27 50-76 339-365 (720)
428 cd03284 ABC_MutS1 MutS1 homolo 97.3 0.0018 4E-08 49.3 8.2 22 50-71 31-52 (216)
429 TIGR03263 guanyl_kin guanylate 97.3 0.00022 4.8E-09 52.5 3.1 24 50-73 2-25 (180)
430 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.0014 2.9E-08 49.3 7.4 21 50-70 29-49 (200)
431 COG4133 CcmA ABC-type transpor 97.3 0.0024 5.3E-08 46.9 8.2 28 49-76 28-55 (209)
432 COG1428 Deoxynucleoside kinase 97.3 0.00029 6.2E-09 52.6 3.5 26 49-74 4-29 (216)
433 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0011 2.3E-08 50.7 6.8 24 48-71 30-53 (222)
434 TIGR01425 SRP54_euk signal rec 97.3 0.0031 6.8E-08 52.7 10.0 36 48-83 99-134 (429)
435 cd02021 GntK Gluconate kinase 97.3 0.00022 4.7E-09 51.0 2.8 23 51-73 1-23 (150)
436 KOG0920 ATP-dependent RNA heli 97.3 0.0056 1.2E-07 55.4 12.1 149 49-201 188-363 (924)
437 PRK00625 shikimate kinase; Pro 97.3 0.0003 6.4E-09 51.6 3.5 24 51-74 2-25 (173)
438 cd00544 CobU Adenosylcobinamid 97.3 0.0018 3.8E-08 47.4 7.5 29 52-83 2-30 (169)
439 COG3839 MalK ABC-type sugar tr 97.3 0.00025 5.4E-09 57.2 3.3 25 47-71 27-51 (338)
440 PRK13947 shikimate kinase; Pro 97.3 0.00029 6.4E-09 51.4 3.5 24 51-74 3-26 (171)
441 PRK09302 circadian clock prote 97.3 0.0012 2.6E-08 56.9 7.7 52 32-84 257-308 (509)
442 KOG1970 Checkpoint RAD17-RFC c 97.3 0.00039 8.4E-09 58.8 4.5 46 27-73 84-134 (634)
443 PRK10463 hydrogenase nickel in 97.3 0.00077 1.7E-08 53.3 5.9 35 47-81 102-136 (290)
444 PLN02459 probable adenylate ki 97.3 0.002 4.3E-08 50.2 8.1 24 50-73 30-53 (261)
445 PRK13889 conjugal transfer rel 97.3 0.0017 3.7E-08 59.6 8.9 26 50-75 363-388 (988)
446 TIGR03600 phage_DnaB phage rep 97.2 0.0027 5.9E-08 53.3 9.6 48 34-83 181-229 (421)
447 COG0572 Udk Uridine kinase [Nu 97.2 0.00048 1E-08 51.9 4.4 30 47-76 6-35 (218)
448 PRK12339 2-phosphoglycerate ki 97.2 0.00035 7.5E-09 52.4 3.7 25 49-73 3-27 (197)
449 cd03285 ABC_MSH2_euk MutS2 hom 97.2 0.0023 5E-08 48.9 8.3 24 48-71 29-52 (222)
450 PRK08533 flagellar accessory p 97.2 0.00093 2E-08 51.4 6.1 38 47-84 22-59 (230)
451 PF03205 MobB: Molybdopterin g 97.2 0.00052 1.1E-08 48.5 4.4 32 50-81 1-32 (140)
452 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00037 8E-09 46.7 3.4 23 48-70 14-36 (107)
453 COG1102 Cmk Cytidylate kinase 97.2 0.00028 6.1E-09 50.4 2.9 23 51-73 2-24 (179)
454 cd01135 V_A-ATPase_B V/A-type 97.2 0.0027 5.8E-08 49.8 8.6 55 47-105 67-125 (276)
455 COG4619 ABC-type uncharacteriz 97.2 0.00043 9.3E-09 50.0 3.8 24 49-72 29-52 (223)
456 COG1485 Predicted ATPase [Gene 97.2 0.0015 3.3E-08 52.4 7.3 102 47-168 63-169 (367)
457 PRK10751 molybdopterin-guanine 97.2 0.0006 1.3E-08 49.9 4.6 29 48-76 5-33 (173)
458 PRK08972 fliI flagellum-specif 97.2 0.0017 3.7E-08 54.2 7.8 39 47-88 160-198 (444)
459 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0015 3.2E-08 50.0 7.1 50 37-88 5-54 (224)
460 COG0396 sufC Cysteine desulfur 97.2 0.0051 1.1E-07 46.7 9.6 25 47-71 28-52 (251)
461 TIGR01313 therm_gnt_kin carboh 97.2 0.00025 5.4E-09 51.4 2.6 22 52-73 1-22 (163)
462 COG1936 Predicted nucleotide k 97.2 0.0003 6.5E-09 50.8 2.9 20 51-70 2-21 (180)
463 PRK14527 adenylate kinase; Pro 97.2 0.00041 8.8E-09 51.8 3.7 26 48-73 5-30 (191)
464 PHA02774 E1; Provisional 97.2 0.0098 2.1E-07 51.3 12.2 41 32-74 419-459 (613)
465 PRK13407 bchI magnesium chelat 97.2 0.00047 1E-08 55.9 4.2 49 22-73 5-53 (334)
466 TIGR01447 recD exodeoxyribonuc 97.2 0.0032 7E-08 54.9 9.6 26 49-74 160-185 (586)
467 PF08477 Miro: Miro-like prote 97.2 0.00038 8.3E-09 47.4 3.3 21 52-72 2-22 (119)
468 cd02029 PRK_like Phosphoribulo 97.2 0.0013 2.8E-08 51.3 6.4 26 51-76 1-26 (277)
469 cd02023 UMPK Uridine monophosp 97.2 0.00029 6.3E-09 52.8 2.9 23 51-73 1-23 (198)
470 PRK10078 ribose 1,5-bisphospho 97.2 0.00034 7.3E-09 52.0 3.1 24 50-73 3-26 (186)
471 PRK06217 hypothetical protein; 97.2 0.00042 9E-09 51.3 3.5 24 51-74 3-26 (183)
472 COG1126 GlnQ ABC-type polar am 97.2 0.00037 8.1E-09 52.2 3.2 56 121-176 143-202 (240)
473 KOG0066 eIF2-interacting prote 97.2 0.0014 3.1E-08 54.3 6.7 22 50-71 614-635 (807)
474 TIGR00554 panK_bact pantothena 97.2 0.0008 1.7E-08 53.4 5.2 28 47-74 60-87 (290)
475 COG3842 PotA ABC-type spermidi 97.2 0.00036 7.9E-09 56.5 3.3 25 47-71 29-53 (352)
476 COG1703 ArgK Putative periplas 97.2 0.0011 2.5E-08 52.1 5.8 47 36-83 39-85 (323)
477 PRK14530 adenylate kinase; Pro 97.1 0.00045 9.8E-09 52.5 3.6 24 50-73 4-27 (215)
478 PLN02674 adenylate kinase 97.1 0.0041 9E-08 48.1 8.8 25 49-73 31-55 (244)
479 PRK10875 recD exonuclease V su 97.1 0.0029 6.4E-08 55.4 8.9 25 49-73 167-191 (615)
480 cd02020 CMPK Cytidine monophos 97.1 0.00042 9.2E-09 49.1 3.2 23 51-73 1-23 (147)
481 PF10923 DUF2791: P-loop Domai 97.1 0.0049 1.1E-07 51.3 9.7 55 22-76 22-76 (416)
482 PF13555 AAA_29: P-loop contai 97.1 0.00057 1.2E-08 40.9 3.2 24 50-73 24-47 (62)
483 COG2805 PilT Tfp pilus assembl 97.1 0.0034 7.3E-08 49.5 8.3 94 47-151 123-217 (353)
484 COG2401 ABC-type ATPase fused 97.1 0.0011 2.3E-08 54.6 5.7 46 27-72 373-432 (593)
485 KOG2383 Predicted ATPase [Gene 97.1 0.0018 3.9E-08 52.9 6.9 111 49-170 114-233 (467)
486 PRK13764 ATPase; Provisional 97.1 0.0014 3.1E-08 56.9 6.8 85 50-150 258-342 (602)
487 PRK13808 adenylate kinase; Pro 97.1 0.0021 4.7E-08 51.8 7.4 22 52-73 3-24 (333)
488 TIGR00665 DnaB replicative DNA 97.1 0.0042 9.1E-08 52.4 9.5 37 47-83 193-230 (434)
489 PRK13975 thymidylate kinase; P 97.1 0.00053 1.2E-08 51.2 3.7 26 50-75 3-28 (196)
490 PRK06761 hypothetical protein; 97.1 0.00069 1.5E-08 53.5 4.4 27 50-76 4-30 (282)
491 cd01132 F1_ATPase_alpha F1 ATP 97.1 0.003 6.4E-08 49.6 7.9 90 47-143 67-172 (274)
492 cd00464 SK Shikimate kinase (S 97.1 0.00052 1.1E-08 49.1 3.5 22 52-73 2-23 (154)
493 PRK13948 shikimate kinase; Pro 97.1 0.0006 1.3E-08 50.4 3.8 28 47-74 8-35 (182)
494 COG3854 SpoIIIAA ncharacterize 97.1 0.0032 7E-08 47.9 7.6 117 51-177 139-260 (308)
495 TIGR02868 CydC thiol reductant 97.1 0.0014 2.9E-08 56.8 6.6 26 47-72 359-384 (529)
496 PRK13900 type IV secretion sys 97.1 0.002 4.4E-08 52.3 7.1 93 49-150 160-253 (332)
497 PF02367 UPF0079: Uncharacteri 97.1 0.0011 2.5E-08 45.5 4.9 27 47-73 13-39 (123)
498 PRK13833 conjugal transfer pro 97.1 0.002 4.4E-08 51.9 7.1 88 50-151 145-234 (323)
499 PLN02200 adenylate kinase fami 97.1 0.0006 1.3E-08 52.6 3.9 26 48-73 42-67 (234)
500 PRK13949 shikimate kinase; Pro 97.1 0.00058 1.2E-08 50.0 3.6 24 51-74 3-26 (169)
No 1
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=8.8e-28 Score=190.59 Aligned_cols=169 Identities=30% Similarity=0.475 Sum_probs=129.4
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh--hcccccceEEEEechhhhccCchHHHHHHHHHHHH
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL--ISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEI 107 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (218)
|+.++++|.++|.... ...++|+|+|++|+|||+||..++++ .+++|+.++|+. ...... ...++..++..+
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~~----~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNPS----LEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-SC----CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-cccccc----cccccccccccc
Confidence 7899999999998855 67899999999999999999999997 788998888874 444332 477788888887
Q ss_pred hhccCC--CcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhhcCC-CceeeC
Q 047309 108 LKLEKD--SIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYGM-DEIYKP 184 (218)
Q Consensus 108 ~~~~~~--~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~~-~~~~~l 184 (218)
...... ...+.......+.+.+.++++||||||+|+...|..+...++....+++||+|||+..++..+.. ...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 665332 34555678889999999999999999999999988887766666678999999999988776544 678999
Q ss_pred CCCChhHHHHHHHHhhcCCC
Q 047309 185 NELNYHDALQLFNMKAFKIQ 204 (218)
Q Consensus 185 ~~L~~~e~~~l~~~~~~~~~ 204 (218)
.+|+.+++++||.+.++...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS
T ss_pred cccccccccccccccccccc
Confidence 99999999999999987654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=2e-26 Score=211.41 Aligned_cols=212 Identities=35% Similarity=0.634 Sum_probs=164.5
Q ss_pred ChhHHHHHHHHHHHccC-CccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccc
Q 047309 1 NESEFIWDIVKAISSKI-PLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEG 79 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~ 79 (218)
+|++.|++|++.+..++ ..++.....++||+..++++..++.... .+.++++|+|++|+||||||+.+++++..+|..
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 58999999999999999 5666677889999999999999986543 678999999999999999999999999888888
Q ss_pred eEEEEec--hh---hhc-----cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhH
Q 047309 80 SSFLADV--RE---KFK-----NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEY 149 (218)
Q Consensus 80 ~~~~~~~--~~---~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~ 149 (218)
.+|+... .. .+. .......+..+++..+......... ....+++.+.++++||||||+|+...|+.
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~ 313 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDA 313 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence 7776431 11 000 0010223444555554433221111 13567888899999999999999988888
Q ss_pred HhcCCCCCCCCceEEEEeCChhhHhhcCCCceeeCCCCChhHHHHHHHHhhcCCCCCCchhHhhhccc
Q 047309 150 LAGKREWFGSGSRIIVTSRDEHLLKTYGMDEIYKPNELNYHDALQLFNMKAFKIQKPLEECVQLSEGV 217 (218)
Q Consensus 150 l~~~~~~~~~~~~ilittr~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~i~~~i 217 (218)
+........+|++||+|||+..++..+....++++..++.+++++||.++||+...+++.+.+++++|
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~i 381 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEV 381 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 87665556789999999999999877666789999999999999999999998766667778877665
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=8e-26 Score=199.95 Aligned_cols=183 Identities=26% Similarity=0.383 Sum_probs=156.1
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh---hcccccceEEEEechhhhccCchHHHHHHHHH
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL---ISHEFEGSSFLADVREKFKNKGSVISFQRQLL 104 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (218)
||.++-++.+...|...+ ..++.|+||+|+||||||+++.+. ...+|+.++|+ +++..+. ...++.+++
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV-~VSk~f~----~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV-VVSKEFT----TRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE-EEccccc----HHhHHHHHH
Confidence 999999999999998743 389999999999999999999984 56789999999 5555444 788999999
Q ss_pred HHHhhccCCCcc-cccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhh-cCCCcee
Q 047309 105 VEILKLEKDSIW-NVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKT-YGMDEIY 182 (218)
Q Consensus 105 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~-~~~~~~~ 182 (218)
..+......... ........+.+++++++++||+||+|+..+|+.+..+++...+|++|++|||+.+++.. ++....+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 887653332222 23678888999999999999999999999999999999988889999999999999999 7778889
Q ss_pred eCCCCChhHHHHHHHHhhcCCC-CCCchhHhhhcccC
Q 047309 183 KPNELNYHDALQLFNMKAFKIQ-KPLEECVQLSEGVH 218 (218)
Q Consensus 183 ~l~~L~~~e~~~l~~~~~~~~~-~~~~~~~~i~~~i~ 218 (218)
+++.|+.++||+||++.+++.. ...+.++++|++|+
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~ 349 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVA 349 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHH
Confidence 9999999999999999998874 45566888888763
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.63 E-value=1.7e-14 Score=119.51 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=111.4
Q ss_pred ccccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (218)
...|+.|+||++|+++|...+... .....+.++|+|++|+|||++++.+++.+.... ...+++ ++..... ..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i-n~~~~~~----~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI-NCQIDRT----RY 100 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE-ECCcCCC----HH
Confidence 346678999999999999998552 224456788999999999999999999775543 223334 3333222 56
Q ss_pred HHHHHHHHHHhhcc-CCCcccccccHHHHHHhhC--CCeEEEEEeCCCChh------HhhHHhcCCCCCC-CCceEEEEe
Q 047309 98 SFQRQLLVEILKLE-KDSIWNVGDGINILGSRLQ--HKKVLLVIDDVVDIK------QLEYLAGKREWFG-SGSRIIVTS 167 (218)
Q Consensus 98 ~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~--~~~~livlD~~~~~~------~~~~l~~~~~~~~-~~~~ilitt 167 (218)
.++..++.++.... +....+.......+.+.+. +++.+||||+++... .+..+........ ....+|+++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 67777777765421 1122233455566666654 457899999997642 2334433222111 123356666
Q ss_pred CChhhHhhcC-------CCceeeCCCCChhHHHHHHHHhhc
Q 047309 168 RDEHLLKTYG-------MDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 168 r~~~~~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
........+. ....+.++|++.++..++++.++.
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 6543322211 135689999999999999998863
No 5
>PF05729 NACHT: NACHT domain
Probab=99.60 E-value=2.2e-14 Score=104.44 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=85.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccccc-----ceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFE-----GSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINI 124 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (218)
|+++|+|++|+|||++++.++..+..... ...++.+.+....... ...+...+....... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN-SRSLADLLFDQLPES----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc-cchHHHHHHHhhccc----hhhhHH---H
Confidence 57899999999999999999987644431 2233334444332211 112222232222111 111111 2
Q ss_pred HHHhh-CCCeEEEEEeCCCChhH---------hhHHhcC-CCC-CCCCceEEEEeCChhh---HhhcCCCceeeCCCCCh
Q 047309 125 LGSRL-QHKKVLLVIDDVVDIKQ---------LEYLAGK-REW-FGSGSRIIVTSRDEHL---LKTYGMDEIYKPNELNY 189 (218)
Q Consensus 125 l~~~l-~~~~~livlD~~~~~~~---------~~~l~~~-~~~-~~~~~~ilittr~~~~---~~~~~~~~~~~l~~L~~ 189 (218)
+.... ...+++||||++|+... +..++.. +.. ..++.++++|+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 22222 57799999999975322 2222222 221 2567899999998765 33344456899999999
Q ss_pred hHHHHHHHHhhc
Q 047309 190 HDALQLFNMKAF 201 (218)
Q Consensus 190 ~e~~~l~~~~~~ 201 (218)
++..+++++++.
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999998853
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.58 E-value=1e-13 Score=113.65 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=107.7
Q ss_pred cccccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhccccc------ceEEEEechhhhcc
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE------GSSFLADVREKFKN 92 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~------~~~~~~~~~~~~~~ 92 (218)
+.+.|..|+||++++++|..++... .....+.++|+|++|+|||++++.+++.+..... ..+|+ ++.....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i-n~~~~~~- 87 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV-NCQILDT- 87 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE-ECCCCCC-
Confidence 4456678999999999999998752 1244567899999999999999999986643221 23344 3333222
Q ss_pred CchHHHHHHHHHHHHhh--cc-CCCcccccccHHHHHHhh--CCCeEEEEEeCCCChh-----HhhHHhcCC-CCCC--C
Q 047309 93 KGSVISFQRQLLVEILK--LE-KDSIWNVGDGINILGSRL--QHKKVLLVIDDVVDIK-----QLEYLAGKR-EWFG--S 159 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~~-----~~~~l~~~~-~~~~--~ 159 (218)
...++..++.++.. .. +....+..+....+.+.+ .+++.+||||+++... .+..+.... .... .
T Consensus 88 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 88 ---LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred ---HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 45677777777642 11 111112233444454544 3567899999998651 123333221 1111 2
Q ss_pred CceEEEEeCChhhHhhc-----CC--CceeeCCCCChhHHHHHHHHhhc
Q 047309 160 GSRIIVTSRDEHLLKTY-----GM--DEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 160 ~~~ilittr~~~~~~~~-----~~--~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
...+|+++........+ .. ...+.++|++.++..++++.++.
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 23455556544332221 11 24689999999999999998874
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.53 E-value=1.9e-14 Score=110.44 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=87.5
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH------H
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF------Q 100 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~ 100 (218)
|+||+.|+++|.+++.. ...+.++|+|+.|+|||+|++.+.+........++|+......... . .... .
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~-~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-S-LRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-H-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-H-HHHHHHHHHHH
Confidence 79999999999999986 3457899999999999999999999775443344444332222110 0 1111 1
Q ss_pred HHHHHHHhhccCC---------CcccccccHHHHHHhh--CCCeEEEEEeCCCChh-------H----hhHHhcCCCCCC
Q 047309 101 RQLLVEILKLEKD---------SIWNVGDGINILGSRL--QHKKVLLVIDDVVDIK-------Q----LEYLAGKREWFG 158 (218)
Q Consensus 101 ~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~~-------~----~~~l~~~~~~~~ 158 (218)
..+...+....+. ...........+.+.+ .+++++|||||++... . +..+..... ..
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQ 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-cc
Confidence 1111222111110 0112222233333333 2345999999997654 1 122222211 13
Q ss_pred CCceEEEEeCChhhHhh--------cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 159 SGSRIIVTSRDEHLLKT--------YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 159 ~~~~ilittr~~~~~~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
....+++++....+... ......+.|+||+.+++.+++...+..
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHC
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHH
Confidence 34455666655544333 233455999999999999999997544
No 8
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.7e-12 Score=99.69 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
..+.++|+|++|+|||+|++.+++.+......+.|+. .... ......++..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~-------~~~~~~~~~~--------------------- 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKS-------QYFSPAVLEN--------------------- 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHh-------hhhhHHHHhh---------------------
Confidence 3467899999999999999999998755555556653 2210 0011111111
Q ss_pred hhCCCeEEEEEeCCCCh---hHhh-HHhcCCCCC-CCCceEEE-EeCC---------hhhHhhcCCCceeeCCCCChhHH
Q 047309 128 RLQHKKVLLVIDDVVDI---KQLE-YLAGKREWF-GSGSRIIV-TSRD---------EHLLKTYGMDEIYKPNELNYHDA 192 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~---~~~~-~l~~~~~~~-~~~~~ili-ttr~---------~~~~~~~~~~~~~~l~~L~~~e~ 192 (218)
+ .+.-+|+|||++.. ..|. .+...+... ..+..+++ |+.. +++.+++.....+++++++.++.
T Consensus 89 -~-~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 -L-EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred -c-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 1 12349999999753 3333 222222211 23445544 4443 35666677778899999999999
Q ss_pred HHHHHHhhcC
Q 047309 193 LQLFNMKAFK 202 (218)
Q Consensus 193 ~~l~~~~~~~ 202 (218)
++++++.+..
T Consensus 167 ~~iL~~~a~~ 176 (229)
T PRK06893 167 IIVLQRNAYQ 176 (229)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.45 E-value=9.6e-13 Score=105.18 Aligned_cols=147 Identities=19% Similarity=0.310 Sum_probs=95.5
Q ss_pred ccccccccccchhH---HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRL---EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~---~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
|.....++|.+..+ +-|.+++.. .......+|||||+||||||+.++......|... ...+.....+.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~------sAv~~gvkdlr 90 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL------SAVTSGVKDLR 90 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe------ccccccHHHHH
Confidence 45666788887766 447777776 4567788999999999999999998765554321 11111111144
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEE--EeCChhh-
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIV--TSRDEHL- 172 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ili--ttr~~~~- 172 (218)
.++++.-+. ...+++.+|++|+++.. .+=+.|++. ..+|.-++| ||.++..
T Consensus 91 ~i~e~a~~~---------------------~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ 146 (436)
T COG2256 91 EIIEEARKN---------------------RLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFE 146 (436)
T ss_pred HHHHHHHHH---------------------HhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCee
Confidence 444333222 12378999999999763 333444433 245665665 6666643
Q ss_pred --HhhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 173 --LKTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 173 --~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
....+...++++.||+.++..+++++.+
T Consensus 147 ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 147 LNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred ecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 1123557889999999999999999844
No 10
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.42 E-value=4.8e-12 Score=110.46 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=103.2
Q ss_pred cccccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhccc-----cc--ceEEEEechhhh
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLISHE-----FE--GSSFLADVREKF 90 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~~--~~~~~~~~~~~~ 90 (218)
+.+.|..++||++|+++|...|...- .....+++|+|++|+|||++++.|++++... .. .++++ ++....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI-NCm~Ls 828 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI-NGMNVV 828 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE-eCCccC
Confidence 34566789999999999999887622 1333567899999999999999999866332 11 23445 433322
Q ss_pred ccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh-C--CCeEEEEEeCCCChh-----HhhHHhcCCCCCCCCce
Q 047309 91 KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL-Q--HKKVLLVIDDVVDIK-----QLEYLAGKREWFGSGSR 162 (218)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~--~~~~livlD~~~~~~-----~~~~l~~~~~~~~~~~~ 162 (218)
. ...+...+..++.+..+........+...+...+ . ....+||||+++... .+..++.... ..+++
T Consensus 829 t----p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SK 902 (1164)
T PTZ00112 829 H----PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSK 902 (1164)
T ss_pred C----HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCe
Confidence 2 4556666666664433222222223344443333 1 234589999997532 1222222111 23444
Q ss_pred EEE--EeCChhh--------HhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 163 IIV--TSRDEHL--------LKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 163 ili--ttr~~~~--------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+++ ++...+. ..++. ...+...|++.++..+++..++..
T Consensus 903 LiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 903 LVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred EEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 443 4433221 12222 234778999999999999999864
No 11
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=1.9e-11 Score=94.14 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=92.1
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQ 102 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
..+.++|-++.+..+...... .....++|+|++|+|||+|+..+++...+....+.|+. ..+. ......
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~-------~~~~~~ 86 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAA-------AGRLRD 86 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHh-------hhhHHH
Confidence 333344444445544444432 23356999999999999999999987766655556663 2221 111111
Q ss_pred HHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHhh-HHhcCCCCC-CCCceEEEEeCCh-------
Q 047309 103 LLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQLE-YLAGKREWF-GSGSRIIVTSRDE------- 170 (218)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~~-~l~~~~~~~-~~~~~ilittr~~------- 170 (218)
.+.. + .+..+|||||++.. ..+. .+...+... .++..+|+|++..
T Consensus 87 ~~~~---------------------l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 87 ALEA---------------------L--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred HHHH---------------------H--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 1111 1 22349999999743 2222 222222211 2456689988753
Q ss_pred --hhHhhcCCCceeeCCCCChhHHHHHHHHhhcC--CCCCCchhHhhhc
Q 047309 171 --HLLKTYGMDEIYKPNELNYHDALQLFNMKAFK--IQKPLEECVQLSE 215 (218)
Q Consensus 171 --~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~i~~ 215 (218)
++.+++.....+++++++.++..+++++++.. ..-+.+.+.-|++
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~ 192 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLT 192 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33445555778999999999999999987642 2233444444443
No 12
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6e-11 Score=96.61 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=112.4
Q ss_pred ccccccccccccchhHHHHHHhhhcCCC-CCceEEEEEcCCCccHHHHHHHHHHhhcccccc--eEEEEechhhhccCch
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPN-DDVRMIGICGMGGLGKTNLARVVYDLISHEFEG--SSFLADVREKFKNKGS 95 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~ 95 (218)
.++..|..+.+|+.++.++...+...-. ..+.-++|+|++|+|||+.++.+++++...... ++++ ++.....
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yI-Nc~~~~t---- 85 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYI-NCLELRT---- 85 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEE-eeeeCCC----
Confidence 4455666699999999999988866222 333449999999999999999999988666433 4555 5555433
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhh--CCCeEEEEEeCCCChh-----HhhHHhcCCCCCCCCceEE--EE
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRL--QHKKVLLVIDDVVDIK-----QLEYLAGKREWFGSGSRII--VT 166 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~~-----~~~~l~~~~~~~~~~~~il--it 166 (218)
...++..++..+.. .+....+..+....+.+.+ .++.+++|+|+++... .+..+....... ..+++ ..
T Consensus 86 ~~~i~~~i~~~~~~-~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i 162 (366)
T COG1474 86 PYQVLSKILNKLGK-VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAV 162 (366)
T ss_pred HHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEE
Confidence 67788888887652 2222233445555555555 3678999999997532 222333222211 33333 34
Q ss_pred eCChhhHhh--------cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 167 SRDEHLLKT--------YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 167 tr~~~~~~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+-+..+... ++.. .+..+|-+.+|..+.+..++.
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred eccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHH
Confidence 444433222 2222 378999999999999999874
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.34 E-value=1.5e-12 Score=96.61 Aligned_cols=51 Identities=29% Similarity=0.533 Sum_probs=36.4
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.|+||+++++++.+++........+.++|+|++|+|||+|++.+++.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999965444667899999999999999999999977665
No 14
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=9.4e-11 Score=92.20 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=90.7
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQ 102 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
+...++-......+....+...-....+.++|+|++|+|||||++.+++.+...-....++... . .. ..+++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~--~---~~-~~~~l~~ 90 (269)
T TIGR03015 17 PDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT--R---VD-AEDLLRM 90 (269)
T ss_pred CCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC--C---CC-HHHHHHH
Confidence 3334444444445554444332113346889999999999999999998765321111222111 1 11 4566666
Q ss_pred HHHHHhhccCCCcccccccHHHHH----Hh-hCCCeEEEEEeCCCChh--HhhHHhcC--CC-CCCCCceEEEEeCChhh
Q 047309 103 LLVEILKLEKDSIWNVGDGINILG----SR-LQHKKVLLVIDDVVDIK--QLEYLAGK--RE-WFGSGSRIIVTSRDEHL 172 (218)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~----~~-l~~~~~livlD~~~~~~--~~~~l~~~--~~-~~~~~~~ilittr~~~~ 172 (218)
++..+.... . ..........+. .. ..+++.+||+||++... .++.+... .. .......+++|.... .
T Consensus 91 i~~~lG~~~-~-~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~ 167 (269)
T TIGR03015 91 VAADFGLET-E-GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-F 167 (269)
T ss_pred HHHHcCCCC-C-CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-H
Confidence 665543221 1 111112222222 22 25778899999998743 33433221 11 111223445555432 2
Q ss_pred Hhhc----------CCCceeeCCCCChhHHHHHHHHhhc
Q 047309 173 LKTY----------GMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 173 ~~~~----------~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
...+ .....+++++|+.++..+++..++.
T Consensus 168 ~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 168 RETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred HHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 1111 1134688999999999999998764
No 15
>PTZ00202 tuzin; Provisional
Probab=99.31 E-value=8.6e-11 Score=95.93 Aligned_cols=167 Identities=13% Similarity=0.170 Sum_probs=106.9
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
..|..+..|+||+.|+..|...+........+++.|+|++|+|||||++.+..... ...++.+... ..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNprg-------~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVRG-------TED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCCC-------HHH
Confidence 44566788999999999999999765445567999999999999999999997553 3355545552 578
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhh-----C-CCeEEEEEe--CCCChhH-hhHHhcCCCCCCCCceEEEEeCC
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRL-----Q-HKKVLLVID--DVVDIKQ-LEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~livlD--~~~~~~~-~~~l~~~~~~~~~~~~ilittr~ 169 (218)
++..++..++... .....++...|.+.+ . ++..+|||- +=.+..- +.+... +.....-|.|++----
T Consensus 325 lLr~LL~ALGV~p---~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpl 400 (550)
T PTZ00202 325 TLRSVVKALGVPN---VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHcCCCC---cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehH
Confidence 8888888876422 222334555554443 2 555555544 2223221 222221 2212445677663322
Q ss_pred hhh--H-hhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 170 EHL--L-KTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 170 ~~~--~-~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+.+ + ..++..+.+.+++||.+++.+|.+...
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 211 1 113456789999999999999988765
No 16
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.31 E-value=7.5e-11 Score=90.92 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=87.7
Q ss_pred ccccccccccccch-hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 19 LKSETLKKLVGIDS-RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 19 ~~~~~~~~~~gR~~-e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
...+..+.++|.+. .+..+.++... ...+.++|+|++|+|||+|++.+++........+.|+ ......
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~-~~~~~~------- 85 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV-PLDKRA------- 85 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE-EHHHHh-------
Confidence 33344444557333 44445555543 3346899999999999999999998765544444555 222210
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHhhHHh-cCCCCC-CCC-ceEEEEeCCh-
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQLEYLA-GKREWF-GSG-SRIIVTSRDE- 170 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~~~l~-~~~~~~-~~~-~~ilittr~~- 170 (218)
.....+.+ .+. +--+|+|||++.. ..|...+ ..+... ..+ .++|+||+..
T Consensus 86 ~~~~~~~~------------------~~~-----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 86 WFVPEVLE------------------GME-----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hhhHHHHH------------------Hhh-----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 00011111 111 1138999999653 2332221 222111 123 4788888753
Q ss_pred --------hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 --------HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 --------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++.+++.+...+++.++++++..+++++++.
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 4566677778999999999999999988654
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.30 E-value=5.6e-11 Score=91.09 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=85.8
Q ss_pred cccccc--cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 24 LKKLVG--IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 24 ~~~~~g--R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
-+.|++ .+..++++.+++.. ...+.++|+|++|+|||+||+.+++..........++. +.... .-..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~-------~~~~ 82 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA-------QADP 82 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH-------HhHH
Confidence 344653 45577888887654 45678999999999999999999987654444444552 22211 1001
Q ss_pred HHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---H-hhHHhcCCCC-CCCCceEEEEeCChh-----
Q 047309 102 QLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---Q-LEYLAGKREW-FGSGSRIIVTSRDEH----- 171 (218)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---~-~~~l~~~~~~-~~~~~~ilittr~~~----- 171 (218)
.++. .+.+ .-+|+|||++... . ...+...+.. ...+..+|+|++...
T Consensus 83 ~~~~----------------------~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 83 EVLE----------------------GLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred HHHh----------------------hccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 1111 1112 2389999997532 2 2222222111 023347888877432
Q ss_pred ----hHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 172 ----LLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 ----~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+..++.....+.++|++.++...+++..+.
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 223333346799999999999999987653
No 18
>PRK05642 DNA replication initiation factor; Validated
Probab=99.27 E-value=1.7e-10 Score=88.81 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=85.3
Q ss_pred cccccccccchhHHHH-HHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEEL-RSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l-~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
+..++++|........ .++.........+.++|+|++|+|||+|++.+++.+.+....+.|+. ..+ +.
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~----------~~ 85 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAE----------LL 85 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHH----------HH
Confidence 4444444654433332 22222222123468899999999999999999987654444555653 222 11
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHhhH-HhcCCCCC-CCCceEEEEeCCh-----
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQLEY-LAGKREWF-GSGSRIIVTSRDE----- 170 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~~~-l~~~~~~~-~~~~~ilittr~~----- 170 (218)
... ..+.+.+.+. -+|+|||++.. ..|.. +...+... .++..+|+|++..
T Consensus 86 ~~~-------------------~~~~~~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~ 145 (234)
T PRK05642 86 DRG-------------------PELLDNLEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELP 145 (234)
T ss_pred hhh-------------------HHHHHhhhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC
Confidence 100 0111111122 27889999632 23322 33332211 3456788887642
Q ss_pred ----hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 ----HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++.+++.+...+++.+++.++..+++++++.
T Consensus 146 ~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 146 IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3445555667899999999999999996654
No 19
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.26 E-value=5.6e-11 Score=94.21 Aligned_cols=151 Identities=19% Similarity=0.305 Sum_probs=97.9
Q ss_pred ccccccccccccchhHHH---HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCch
Q 047309 19 LKSETLKKLVGIDSRLEE---LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~---l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
..|.....+||.+..+.+ |.++++. .+.+.+++||++|+||||||+.++.....+- ..|+ .+........+
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfv-elSAt~a~t~d 205 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFV-ELSATNAKTND 205 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEE-EEeccccchHH
Confidence 344566678888776655 4555544 5677889999999999999999998655442 3444 23222222222
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEE--EeCChh
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIV--TSRDEH 171 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ili--ttr~~~ 171 (218)
+.+++++.-+.. .+.+++.+|++|+++... +-+.| ++...+|.-++| ||.++.
T Consensus 206 vR~ife~aq~~~--------------------~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 206 VRDIFEQAQNEK--------------------SLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPS 262 (554)
T ss_pred HHHHHHHHHHHH--------------------hhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCc
Confidence 555555444331 224678999999997533 22222 334456765665 677765
Q ss_pred hHh---hcCCCceeeCCCCChhHHHHHHHH
Q 047309 172 LLK---TYGMDEIYKPNELNYHDALQLFNM 198 (218)
Q Consensus 172 ~~~---~~~~~~~~~l~~L~~~e~~~l~~~ 198 (218)
... .+..+..+.|++|..++...++.+
T Consensus 263 Fqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 263 FQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred cchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 422 245678899999999999999887
No 20
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=1.8e-10 Score=87.82 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred cccccccccchh-HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc--ceEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSR-LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE--GSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e-~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (218)
+..+.++|..++ .-.....+....+.....++|+|++|+|||+|++++++.+.+..+ .+.|+. ..+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~ 74 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEE 74 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHH
Confidence 344445676444 333333343333245567899999999999999999997654332 344552 233
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHhh-HHhcCCCC-CCCCceEEEEeCCh---
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQLE-YLAGKREW-FGSGSRIIVTSRDE--- 170 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~~-~l~~~~~~-~~~~~~ilittr~~--- 170 (218)
....+...+.. .....+...++ .--+|+|||++.. ..|. .+...+.. ...+.++|+|+...
T Consensus 75 f~~~~~~~~~~----------~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 75 FIREFADALRD----------GEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHHHHHT----------TSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred HHHHHHHHHHc----------ccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 33333332211 11233333333 3348999999653 2222 22221111 13567899988553
Q ss_pred ------hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 ------HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++.+++.+.-.+++.+.+.++..+++++.+.
T Consensus 144 l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 144 LSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp TTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 4455666778899999999999999999874
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.26 E-value=8.8e-11 Score=97.80 Aligned_cols=148 Identities=24% Similarity=0.355 Sum_probs=89.4
Q ss_pred ccccccccccchhHHH---HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRLEE---LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~---l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
|.....|+|++..+.. +.+++.. .....++++|++|+||||||+.+++.....|.. +..... . ..
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~~~---~---~~ 75 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAVTS---G---VK 75 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecccc---c---HH
Confidence 3455679999988777 8888866 345678899999999999999999876443321 111100 0 11
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEE--EeCChhh-
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIV--TSRDEHL- 172 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ili--ttr~~~~- 172 (218)
..+.++..... ....++..+|+||+++... ..+.++..+. .+..+++ ||.+...
T Consensus 76 -~ir~ii~~~~~-----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 76 -DLREVIEEARQ-----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred -HHHHHHHHHHH-----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 11122221110 0113567899999998643 3444444332 2344444 3333321
Q ss_pred --HhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 173 --LKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 173 --~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
....+....+.+.+++.++...++.+.+.
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHH
Confidence 11224467899999999999999998653
No 22
>PF13173 AAA_14: AAA domain
Probab=99.26 E-value=4.8e-11 Score=83.41 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=77.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL 129 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 129 (218)
++++|.|+.|+|||||++++++++. ....++++ ++..... ..... . + ....+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi-~~~~~~~-----~~~~~--~--------------~-~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI-NFDDPRD-----RRLAD--P--------------D-LLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceee-ccCCHHH-----HHHhh--h--------------h-hHHHHHHhh
Confidence 6889999999999999999998765 23444555 2222110 00000 0 0 122222222
Q ss_pred CCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhh------cCCCceeeCCCCChhHH
Q 047309 130 QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKT------YGMDEIYKPNELNYHDA 192 (218)
Q Consensus 130 ~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~------~~~~~~~~l~~L~~~e~ 192 (218)
.++..+|+||+++....|...+..+.+..+..++++|+........ .+....+++.||+-+|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3467799999999888888777777665667899999887655432 12345689999998874
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=8.7e-11 Score=101.78 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=99.9
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
|..-+.++|.+..++.|.+++... .-...++++|+.|+||||+++.+++.+.-... .... .++ ....+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~-PCG--------~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQ-PCG--------VCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCC-CCc--------ccHHH
Confidence 345567999999999999999762 12346689999999999999999996531100 0000 000 11111
Q ss_pred HHHHH----HHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 101 RQLLV----EILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
..+.. ++...........+++...+.... .++.-++|||+++.+. .+..++..+..-....++|++|.+.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 11110 000000011111222222222211 2344589999998754 3666766555445567888877765
Q ss_pred h-hHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 171 H-LLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 ~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
. +... .+.+..+.+.+++.++..+.+.+.+..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 3 2222 345778999999999999999987643
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=2e-10 Score=93.22 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=92.8
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-c-ceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-E-GSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i 99 (218)
.....++|++..++.+.+++.. ...+.++++|++|+|||++|+.+++.+.... . ...++ ++....... ...+
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i-~~~~~~~~~--~~~~ 85 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF-NVADFFDQG--KKYL 85 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe-chhhhhhcc--hhhh
Confidence 3445689999999999999976 3345788999999999999999998764332 1 12233 222211000 0000
Q ss_pred HH--HHHHHHhhccCCCcccccccHH-HHHHh---h--CCCeEEEEEeCCCChhH--hhHHhcCCCCCCCCceEEEEeCC
Q 047309 100 QR--QLLVEILKLEKDSIWNVGDGIN-ILGSR---L--QHKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 100 ~~--~~~~~~~~~~~~~~~~~~~~~~-~l~~~---l--~~~~~livlD~~~~~~~--~~~l~~~~~~~~~~~~ilittr~ 169 (218)
.. .....+ ............... .+... . .+.+-+|||||++.... ...+...+......+++|+++..
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 86 VEDPRFAHFL-GTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hcCcchhhhh-hhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 000000 000000000001111 11111 1 13345899999976432 23333322222445677777654
Q ss_pred hh-hHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 EH-LLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.. .... .+....+++.|++.++...++.+.+.
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 32 2222 23356789999999999999998764
No 25
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.6e-10 Score=96.21 Aligned_cols=185 Identities=13% Similarity=0.137 Sum_probs=101.2
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|..-..++|.+..+..|..++.... -...++++|++|+||||+|+.+++.+.-. ......+..+.. -..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s-------C~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS-------CLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH-------HHHH
Confidence 3455669999999999999997631 23458999999999999999999965321 111000000000 0000
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC-hhh
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD-EHL 172 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~-~~~ 172 (218)
.......+...........+.+...+... ..++.-++|||+++.. ..+..++..+..-.....+|++|.+ ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 00000000000000111111111111111 1345569999999864 4577777666543344555555544 333
Q ss_pred Hhh-cCCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhh
Q 047309 173 LKT-YGMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLS 214 (218)
Q Consensus 173 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~ 214 (218)
... .++++.+.+.+++.++..+++.+.+... ..+++.+..|+
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222 3446789999999999999999876432 22344444444
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=5.5e-10 Score=101.74 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=99.1
Q ss_pred cccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
+|..+..++-|..-.+.+.+. ...++++|+||+|.||||++..+.++. ..+.|+ .+...... ...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~-~l~~~d~~---~~~f 74 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWY-SLDESDNQ---PERF 74 (903)
T ss_pred CCCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEE-ecCcccCC---HHHH
Confidence 455667789999777776532 345899999999999999999988642 257777 45432211 3444
Q ss_pred HHHHHHHHhhccCCC---------c---ccccccHHHHHHhh-C-CCeEEEEEeCCCChh--HhhHHhcC-CCCCCCCce
Q 047309 100 QRQLLVEILKLEKDS---------I---WNVGDGINILGSRL-Q-HKKVLLVIDDVVDIK--QLEYLAGK-REWFGSGSR 162 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~---------~---~~~~~~~~~l~~~l-~-~~~~livlD~~~~~~--~~~~l~~~-~~~~~~~~~ 162 (218)
...++..+....... . .+...+...+...+ . +.+++|||||++..+ ....++.. +.....+.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 555555543211110 0 11112222222222 2 679999999997532 22222222 222345678
Q ss_pred EEEEeCChhhHh--hcC-CCceeeCC----CCChhHHHHHHHHhhcC
Q 047309 163 IIVTSRDEHLLK--TYG-MDEIYKPN----ELNYHDALQLFNMKAFK 202 (218)
Q Consensus 163 ilittr~~~~~~--~~~-~~~~~~l~----~L~~~e~~~l~~~~~~~ 202 (218)
+|+|||...... .+. .....++. +|+.+|+.+||....+.
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 889999843211 111 13345555 99999999999887543
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=8.4e-10 Score=90.41 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=95.0
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+..++.+.+.+... .-...++++|++|+||||+|+.+++.+.-..... ...+. ....+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~------~~pc~----~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT------SNPCR----KCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC------CCCCC----CCHHHH
Confidence 45567899999999999998763 2234678999999999999999998763110000 00000 000001
Q ss_pred HHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 102 QLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 102 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
.+... +....+......+.+...+... ..++.-++|||+++... .+..++..+........+|++|.+..
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 10000 0000000001111111111110 02345599999998754 45666665554455566777665432
Q ss_pred -hHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 172 -LLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 172 -~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+... .+....+++.|++.++..+++...+..
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3222 234678999999999999999886543
No 28
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.19 E-value=1e-10 Score=81.91 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc-----ccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE-----FEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGI 122 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 122 (218)
+.+.++|+|++|+|||++++.+++.+... ...++|+ .+..... ...+...++..+...... ..+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~i~~~l~~~~~~-~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYV-NCPSSRT----PRDFAQEILEALGLPLKS-RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEE-EHHHHSS----HHHHHHHHHHHHT-SSSS-TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEE-EeCCCCC----HHHHHHHHHHHhCccccc-cCCHHHHH
Confidence 45789999999999999999999976442 2333444 4444332 778888888887654433 34455666
Q ss_pred HHHHHhhCCC-eEEEEEeCCCCh-h--HhhHHhcCCCCCCCCceEEEEeCC
Q 047309 123 NILGSRLQHK-KVLLVIDDVVDI-K--QLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 123 ~~l~~~l~~~-~~livlD~~~~~-~--~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
..+...+... ..+||||+++.. . .++.+..... ..+.++++..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777666544 469999999765 2 2344433222 666788887765
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.19 E-value=1.8e-10 Score=94.51 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=96.4
Q ss_pred ccccccccccchhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF 90 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~ 90 (218)
......+.|+++.+++|.+++.... -..++.++|+|++|+|||++|+.+++.....|..+ ...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v----~~~--- 190 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV----VGS--- 190 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec----chH---
Confidence 3445578999999999988874311 02345689999999999999999999765443211 100
Q ss_pred ccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCC
Q 047309 91 KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKR 154 (218)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~ 154 (218)
.+....... ....+...+...-...+.+|+||+++... .+..++..+
T Consensus 191 -------~l~~~~~g~----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 191 -------ELVRKYIGE----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred -------HHHHHhhhH----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 111110000 00001112222223567799999986431 122232222
Q ss_pred CC--CCCCceEEEEeCChhhHh-hc----CCCceeeCCCCChhHHHHHHHHhhcCCCCC-CchhHhhhc
Q 047309 155 EW--FGSGSRIIVTSRDEHLLK-TY----GMDEIYKPNELNYHDALQLFNMKAFKIQKP-LEECVQLSE 215 (218)
Q Consensus 155 ~~--~~~~~~ilittr~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~-~~~~~~i~~ 215 (218)
.. ...+..||.||...+... .+ .-...+++++.+.++..++|+.++.+.... .-.+..+++
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 11 123456777776543211 11 224578999999999999999987654322 223444443
No 30
>PRK09087 hypothetical protein; Validated
Probab=99.19 E-value=2.1e-10 Score=87.80 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=73.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...+.++|+|++|+|||+|++.++.... ..|+. ... +...+...+
T Consensus 42 ~~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~~~----------~~~~~~~~~------------------- 86 (226)
T PRK09087 42 WPSPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-PNE----------IGSDAANAA------------------- 86 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-HHH----------cchHHHHhh-------------------
Confidence 3456799999999999999998887532 22442 111 111111110
Q ss_pred HhhCCCeEEEEEeCCCChh-HhhHHhcCCCCC-CCCceEEEEeCC---------hhhHhhcCCCceeeCCCCChhHHHHH
Q 047309 127 SRLQHKKVLLVIDDVVDIK-QLEYLAGKREWF-GSGSRIIVTSRD---------EHLLKTYGMDEIYKPNELNYHDALQL 195 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~-~~~~l~~~~~~~-~~~~~ilittr~---------~~~~~~~~~~~~~~l~~L~~~e~~~l 195 (218)
.+ -+|++||++... .-..+...+... ..+..+|+|++. +++.+++.+...+++++++.++..++
T Consensus 87 ---~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 87 ---AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred ---hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 01 278899996431 112222222211 346778888763 45666777788999999999999999
Q ss_pred HHHhhcC
Q 047309 196 FNMKAFK 202 (218)
Q Consensus 196 ~~~~~~~ 202 (218)
+++.+..
T Consensus 162 L~~~~~~ 168 (226)
T PRK09087 162 IFKLFAD 168 (226)
T ss_pred HHHHHHH
Confidence 9998753
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=6.4e-10 Score=89.55 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=91.4
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE-echhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA-DVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 100 (218)
..-..++|++..++.+..++.. ...+.++++|++|+|||++++.+++.+........++. +..... -....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~-----~~~~~ 85 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER-----GIDVI 85 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-----chHHH
Confidence 3445689999999999999976 33446799999999999999999987633221111111 111110 11112
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCChh-hHhh-c
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDEH-LLKT-Y 176 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~~-~~~~-~ 176 (218)
...+..+....+. ....+-++++|+++... ....+...+......+.+|+++.... .... .
T Consensus 86 ~~~i~~~~~~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 86 RNKIKEFARTAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHHHHHHhcCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 2222221111100 01234589999997642 23344433333345567777664321 2111 1
Q ss_pred CCCceeeCCCCChhHHHHHHHHhhc
Q 047309 177 GMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 177 ~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+....+++.+++.++...+++..+.
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHH
Confidence 2355689999999999999998764
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=1.8e-10 Score=92.32 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=41.4
Q ss_pred ccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 25 KKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..|+|+++.+++|..++.... ....+.++++|++|+|||+||+.+++.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 569999999999999886411 133456889999999999999999997653
No 33
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=7.9e-10 Score=78.33 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=41.4
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+||+..+..+...+.. ...+.++|+|++|+|||++++.+++.+......+.++
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 4788889999888876 3457899999999999999999999775433344444
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=99.17 E-value=4.2e-10 Score=95.51 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=99.1
Q ss_pred ccccccccccchhHHHHHHhhhcCCC-CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPN-DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|.....++|++..++.+.+|+..-.. ...+.++|+|++|+||||+|+.+++.+. +.. +.+ +.... . ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-nasd~----r-~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NASDQ----R-TADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-ccccc----c-cHHH
Confidence 44566799999999999999875221 2267899999999999999999999763 221 112 22111 1 1223
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh------HhhHHhcCCCCCCCCceEEEEeCChh-h
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK------QLEYLAGKREWFGSGSRIIVTSRDEH-L 172 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~------~~~~l~~~~~~~~~~~~ilittr~~~-~ 172 (218)
+..+......... ....++-+||||+++... .+..+...+. ...+.+|+++.+.. .
T Consensus 81 i~~~i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 3333332211100 001256699999998642 2444443332 33455666654432 2
Q ss_pred H--hhcCCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhh
Q 047309 173 L--KTYGMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLS 214 (218)
Q Consensus 173 ~--~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~ 214 (218)
. ...+....+.+.+++.++....++..+... .-+++.+..|+
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia 189 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIA 189 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 112346789999999999999999876432 22334444444
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=99.17 E-value=5.8e-10 Score=89.87 Aligned_cols=160 Identities=11% Similarity=0.194 Sum_probs=92.9
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|.....++|.++.++.|..++.. ...+.++++|++|+||||+|+.+++.+.. .+.....-.+.... . -.+.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~---~--~~~~ 80 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD---GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD---R--GIDV 80 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc---c--cHHH
Confidence 34556789999999999988876 33456889999999999999999997632 22211111111110 0 1122
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH--hhHHhcCCCCCCCCceEEEEeCCh-hhHhh-
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ--LEYLAGKREWFGSGSRIIVTSRDE-HLLKT- 175 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~--~~~l~~~~~~~~~~~~ilittr~~-~~~~~- 175 (218)
.+...+.+...... . ..++.-+++||+++.... -..+...+......+++++++... .+...
T Consensus 81 vr~~i~~~~~~~~~-~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKVT-L-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhcccc-C-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 33332222111000 0 013456999999987432 233333232223456677766442 22111
Q ss_pred cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 176 YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+....+++.+++.++....+...+..
T Consensus 147 ~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 147 QSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred HHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 123567999999999999999987643
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=6.2e-10 Score=98.24 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=95.4
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCc-eEEEEEcCCCccHHHHHHHHHHhhccc-ccc--eEEEEechhhhccCchHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDV-RMIGICGMGGLGKTNLARVVYDLISHE-FEG--SSFLADVREKFKNKGSVI 97 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~-~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 97 (218)
..-..++|.+..++.|.+++.. .+. ..++++|++|+||||+|+.+++.+.-. ... .+..| ..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--~s--------- 78 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--SS--------- 78 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--hH---------
Confidence 4556799999999999999976 233 446899999999999999999976321 100 00000 00
Q ss_pred HHHHHHHHH----HhhccCCCcccccccHHHHHH----hhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEe
Q 047309 98 SFQRQLLVE----ILKLEKDSIWNVGDGINILGS----RLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTS 167 (218)
Q Consensus 98 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilitt 167 (218)
+..+... +...........+.+...+.. -..++.-++|||+++.+ .....|+..+..-....++|++|
T Consensus 79 --C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 79 --CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred --HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 0000000 000000000111111111111 11355669999999874 45667666555434556676655
Q ss_pred CC-hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 168 RD-EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 168 r~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+ ..+... ..++..+.+.+|+.++..+++.+.+.
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHH
Confidence 54 333322 34567899999999999999998663
No 37
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=5.2e-10 Score=95.96 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=102.2
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+...+.|.+++... .-...++++|++|+||||+|+.+++.+.-......-- +. ....++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p--Cg--------~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP--CE--------VCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC--Cc--------cCHHHH
Confidence 45567999999999999999763 2235779999999999999999998653110000000 00 011111
Q ss_pred HHHH----HHhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 102 QLLV----EILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 102 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
.+.. .+...........+++...+... ..++.-++|||+++.. .....++..+.....+..+|++|.+..
T Consensus 80 ~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 1110 00000000011122222222111 1245569999999875 345666655544345567777776542
Q ss_pred -hH-hhcCCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhh
Q 047309 172 -LL-KTYGMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLS 214 (218)
Q Consensus 172 -~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~ 214 (218)
+. ...+.+..+++.+++.++..+.+.+.+... ..+...+..|+
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA 206 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA 206 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 21 113557789999999999999998876432 22334444444
No 38
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=2.2e-09 Score=89.91 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=93.3
Q ss_pred cccccccchhHH--HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc--ceEEEEechhhhccCchHHHH
Q 047309 24 LKKLVGIDSRLE--ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE--GSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 24 ~~~~~gR~~e~~--~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i 99 (218)
.++.+|-.+... .+.++.... .....++|+|++|+|||+|++.+++.+.+... .+.|+. . .++
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~--~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~----------~~f 171 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNP--GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKF 171 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHH
Confidence 334457554432 333444322 22457999999999999999999997655432 334442 2 222
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHh-hHHhcCCCC-CCCCceEEEEeC-Ch---
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQL-EYLAGKREW-FGSGSRIIVTSR-DE--- 170 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~-~~l~~~~~~-~~~~~~ilittr-~~--- 170 (218)
...+...+... ....+.+....+.-+|+|||++.. ... ..+...+.. ...+..+|+|+. .+
T Consensus 172 ~~~~~~~~~~~----------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 172 LNDLVDSMKEG----------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHHhcc----------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 33333222110 122333333344568999999742 111 122222111 123456888775 32
Q ss_pred -----hhHhhcCCCceeeCCCCChhHHHHHHHHhhcC--CCCCCchhHhhhcc
Q 047309 171 -----HLLKTYGMDEIYKPNELNYHDALQLFNMKAFK--IQKPLEECVQLSEG 216 (218)
Q Consensus 171 -----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~i~~~ 216 (218)
.+.+++...-.+.+++.+.+...+++++.+.. ..-+++-+.-|++.
T Consensus 242 ~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~ 294 (440)
T PRK14088 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAEN 294 (440)
T ss_pred HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 22333445668899999999999999988753 22344445555543
No 39
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.14 E-value=4.2e-10 Score=86.39 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=80.1
Q ss_pred ccccccc-ccchhH-HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLV-GIDSRL-EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~-gR~~e~-~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
.+-++|+ |++.++ ..+..+.... ...+.++|+|++|+|||+||+.+++..........++. .... ...
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~--~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~-------~~~ 84 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGP--VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP-------LLA 84 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh-------HHH
Confidence 4445555 554443 4455554421 34568999999999999999999987644433444442 2221 100
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH--hhHHhcCCCCC-CCCc-eEEEEeCChh----
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ--LEYLAGKREWF-GSGS-RIIVTSRDEH---- 171 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~--~~~l~~~~~~~-~~~~-~ilittr~~~---- 171 (218)
.. . ..+.-+|+|||++.... -..+...+... ..+. .+++|++...
T Consensus 85 ----~~----------------------~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 85 ----FD----------------------F-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred ----Hh----------------------h-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 00 0 12234799999975322 12222222111 1233 3566655432
Q ss_pred ----hHhhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 172 ----LLKTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 172 ----~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+.+++.....++++|+++++...++.+.+
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 12244445789999999998888888754
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.13 E-value=1.7e-09 Score=96.02 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-----c-cceEEEEechhhhc---cC
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-----F-EGSSFLADVREKFK---NK 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~-~~~~~~~~~~~~~~---~~ 93 (218)
....++||++++..+.+.|... ...-++++|++|+|||++++.+++++... + ...+|..++..... ..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~---~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR---KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 4456999999999999888763 33456799999999999999999976332 1 12233323222110 00
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------HhhHHhcCCCCCCCC-ce
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------QLEYLAGKREWFGSG-SR 162 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------~~~~l~~~~~~~~~~-~~ 162 (218)
+.+..-++ ..+.......+.+|+||+++... +...++.+.. ..| ..
T Consensus 257 g~~e~~l~---------------------~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~ 313 (731)
T TIGR02639 257 GDFEERLK---------------------AVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLR 313 (731)
T ss_pred chHHHHHH---------------------HHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeE
Confidence 00111111 22222223457899999997321 1222332211 233 34
Q ss_pred EEEEeCChhhH-------hhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 163 IIVTSRDEHLL-------KTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 163 ilittr~~~~~-------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+|-+|...+.. ...+.++.+++.+++.++..++++...
T Consensus 314 ~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 314 CIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 55444432211 112346789999999999999999654
No 41
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.12 E-value=3.4e-09 Score=89.35 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=93.4
Q ss_pred ccccccchh--HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc--ceEEEEechhhhccCchHHHHH
Q 047309 25 KKLVGIDSR--LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE--GSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 25 ~~~~gR~~e--~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
+..+|..+. ...+.++..... ...+.++|+|++|+|||+|++.+++.+.+.+. .+.|+ .... +.
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~----------~~ 190 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEK----------FT 190 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHH----------HH
Confidence 335565543 333344444322 33467999999999999999999998765542 23344 2222 22
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----HhhHHhcCCCC-CCCCceEEEEeCCh-----
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----QLEYLAGKREW-FGSGSRIIVTSRDE----- 170 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----~~~~l~~~~~~-~~~~~~ilittr~~----- 170 (218)
..+...+.. . ....+.+.+. +.-+|+|||++... .-..+...+.. ...+..+++|+...
T Consensus 191 ~~~~~~~~~------~----~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 191 NDFVNALRN------N----TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHc------C----cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 222222211 0 1122333333 34489999996421 11222221111 12345577776543
Q ss_pred ----hhHhhcCCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhhcc
Q 047309 171 ----HLLKTYGMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLSEG 216 (218)
Q Consensus 171 ----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~~~ 216 (218)
.+.+++.....+++++.+.++..+++++.+... .-+++.++-|+..
T Consensus 260 ~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~ 311 (450)
T PRK00149 260 GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKN 311 (450)
T ss_pred HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 223445556789999999999999999987532 2344555555543
No 42
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.10 E-value=4.9e-09 Score=86.63 Aligned_cols=170 Identities=17% Similarity=0.216 Sum_probs=94.5
Q ss_pred cccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
.....+.|+++.++++.+.+... .-..++.++++|++|+|||++|+.+++.....|- .+ ....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v-~~~~--- 200 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RV-VGSE--- 200 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Ee-ehHH---
Confidence 34456889999999998877431 1134567899999999999999999987643321 11 1111
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh------------H----hhHHhcCCC
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK------------Q----LEYLAGKRE 155 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~------------~----~~~l~~~~~ 155 (218)
+..... + .....+...+...-...+.+|+||+++... . +..++..+.
T Consensus 201 -------l~~~~~----g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 201 -------LVQKFI----G------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred -------HhHhhc----c------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 110000 0 000011112222223567899999997531 1 122222221
Q ss_pred CC--CCCceEEEEeCChhhHhh--c---CCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 156 WF--GSGSRIIVTSRDEHLLKT--Y---GMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 156 ~~--~~~~~ilittr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.. ..+..||.||...+.... + .-+..+++++.+.++..++|+.++.+... ..-.+..+++
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~ 331 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAE 331 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHH
Confidence 11 123456666655432111 1 12457999999999999999988765432 2234444443
No 43
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.10 E-value=3.9e-09 Score=86.26 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=98.4
Q ss_pred ccccccccccchhHHH-HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEE-LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~-l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
.+..+..+|-...... +...+.........+++|+|+.|.|||+|++++++..........++....+.+ +.+.
T Consensus 84 ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-----~~~~ 158 (408)
T COG0593 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-----TNDF 158 (408)
T ss_pred CchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-----HHHH
Confidence 3445556665544433 334443332245789999999999999999999998777766554443333332 2233
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCC---hhHh-hHHhcCCCCC-CCCceEEEEeCC-----
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVD---IKQL-EYLAGKREWF-GSGSRIIVTSRD----- 169 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~---~~~~-~~l~~~~~~~-~~~~~ilittr~----- 169 (218)
...+... -...+++.. +--+++|||++- .+.+ +.++..++.. ..+..|++|++.
T Consensus 159 v~a~~~~--------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 159 VKALRDN--------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHhh--------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 3332221 133444444 344899999963 1111 2222222211 344488888865
Q ss_pred ----hhhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 ----EHLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ----~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+++.+++.++-.+++.|.+.+...+.+++.+.
T Consensus 223 ~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 223 NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 35566778888999999999999999999764
No 44
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.09 E-value=2e-09 Score=94.71 Aligned_cols=147 Identities=26% Similarity=0.350 Sum_probs=87.0
Q ss_pred ccccccccccchhHH---HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRLE---ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~---~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
|.....|+|++..+. .+.+++.. .....++++|++|+||||||+.+++.....|. .+.+. ... ..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~~~---i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---LAG---VK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---hhh---hH
Confidence 445567999999885 57777765 44567889999999999999999987654431 11111 000 11
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhh--CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEE--eCChh
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRL--QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVT--SRDEH 171 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilit--tr~~~ 171 (218)
++ +..+.. ....+ .++..+|+|||++.. .....++..+ ..+..+++. |.+..
T Consensus 92 di-r~~i~~------------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 DL-RAEVDR------------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPY 149 (725)
T ss_pred HH-HHHHHH------------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChH
Confidence 11 111111 11111 145679999999864 3344555432 233444442 33321
Q ss_pred --hHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 172 --LLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 --~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+... .+....+.++|++.++...++++.+.
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 1111 23356799999999999999998764
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=2.6e-09 Score=92.82 Aligned_cols=171 Identities=20% Similarity=0.171 Sum_probs=108.1
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.+|..+.+++-|...++.+.+.. ..|.++|..|+|.|||||+-+.+. .......+.|+....+..+ ...
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~~------~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dnd----p~r 81 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRAN------DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDND----PAR 81 (894)
T ss_pred CCCCCcccccccHHHHHHHhcCC------CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCC----HHH
Confidence 34455777888988877766544 458999999999999999999987 4556688899954444333 566
Q ss_pred HHHHHHHHHhhccCCCc------------ccccccHHHHHHhh--CCCeEEEEEeCCCCh---hHhhHHhcCCCCCCCCc
Q 047309 99 FQRQLLVEILKLEKDSI------------WNVGDGINILGSRL--QHKKVLLVIDDVVDI---KQLEYLAGKREWFGSGS 161 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~l--~~~~~livlD~~~~~---~~~~~l~~~~~~~~~~~ 161 (218)
+++.++..+..-.+... .+...++..+...+ ..+++++||||.+.. .--..+...+.....+.
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 77777666542222111 11222333333333 256899999998642 22222222223335678
Q ss_pred eEEEEeCChhhHhhc--C-CCcee----eCCCCChhHHHHHHHHhh
Q 047309 162 RIIVTSRDEHLLKTY--G-MDEIY----KPNELNYHDALQLFNMKA 200 (218)
Q Consensus 162 ~ilittr~~~~~~~~--~-~~~~~----~l~~L~~~e~~~l~~~~~ 200 (218)
.+++|||+....... . .+..+ +.-.|+.+|+.++|..+.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 999999987542221 1 12233 344799999999999984
No 46
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=6e-09 Score=87.25 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=90.1
Q ss_pred cccccccccchhHH--HHHHhhhcCC---CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 22 ETLKKLVGIDSRLE--ELRSLMNKGP---NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 22 ~~~~~~~gR~~e~~--~l~~~l~~~~---~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
+..++.+|..+.+. .+.++..... ......++|+|++|+|||+|++.+++.+......+.|+. .
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------- 177 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------- 177 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------
Confidence 33344557766643 4444443211 123467899999999999999999998755444445552 1
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH----hhHHhcCCCC-CCCCceEEEEeCCh-
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ----LEYLAGKREW-FGSGSRIIVTSRDE- 170 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~----~~~l~~~~~~-~~~~~~ilittr~~- 170 (218)
..+...+...+... ....++.... ..-+|+|||++.... -+.+...+.. ...+..+|+||...
T Consensus 178 ~~f~~~~~~~l~~~----------~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 178 ELFTEHLVSAIRSG----------EMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHHhcc----------hHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 11222222222110 1122333332 344889999864311 1222222111 02345788877542
Q ss_pred --------hhHhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 171 --------HLLKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 --------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+..++.++..+.+.+++.++..+++++.+..
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 33444555678999999999999999987754
No 47
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=5.5e-09 Score=89.44 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=90.5
Q ss_pred ccccccccchhH--HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHHH
Q 047309 23 TLKKLVGIDSRL--EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 23 ~~~~~~gR~~e~--~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 98 (218)
..++++|-.+.+ ..+..+..... .....++|+|++|+|||+|++.+++...+.+ ..+.|+. ...
T Consensus 287 FDnFvvG~sN~~A~aaa~avae~~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aee 354 (617)
T PRK14086 287 FDTFVIGASNRFAHAAAVAVAEAPA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEE 354 (617)
T ss_pred HhhhcCCCccHHHHHHHHHHHhCcc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHH
Confidence 334455665542 23344444322 2345689999999999999999999765432 3344552 222
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh---hHh-hHHhcCCCCC-CCCceEEEEeCCh---
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---KQL-EYLAGKREWF-GSGSRIIVTSRDE--- 170 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---~~~-~~l~~~~~~~-~~~~~ilittr~~--- 170 (218)
+...+...+.. .....+++.+.. .-+|+|||++.. ..+ +.++..+... ..+..||+||...
T Consensus 355 f~~el~~al~~----------~~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 355 FTNEFINSIRD----------GKGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred HHHHHHHHHHh----------ccHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 23333222211 012223333332 348899999642 111 2222222111 3456688887752
Q ss_pred ------hhHhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 171 ------HLLKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 ------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
++.+++.+.-.++|.+.+.+...++|++.+..
T Consensus 424 L~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 424 LVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred hhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 44556677888999999999999999998753
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=9.3e-10 Score=89.05 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=44.0
Q ss_pred ccccccccccchhHHHHHHhhhcC--CCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKG--PNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~--~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
|.....|+||++.++.+..++... .....+.++++|++|+|||+||+.+++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 345667999999999998888641 1144567899999999999999999997753
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=4.6e-09 Score=88.41 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=96.9
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
|..-..++|.+...+.|.+.+... .-...++++||+|+||||+|+.+++.+...-.. .+. .+. ....+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~-~~~-pc~--------~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRK-GVE-PCN--------ECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCC-CCc--------ccHHH
Confidence 345567999999988888888753 223457899999999999999999865321000 000 000 00000
Q ss_pred HHHHH----HHhhccCCCcccccccHHHHHHh-----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCC
Q 047309 101 RQLLV----EILKLEKDSIWNVGDGINILGSR-----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
..+.. .............+.+. .+.+. ..++.-++|+|+++... ....++..+........++++|.+
T Consensus 78 ~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred HHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 00000 00000000001111111 11111 12456699999998643 345555544432334444555444
Q ss_pred h-hhHhh-cCCCceeeCCCCChhHHHHHHHHhhcC--CCCCCchhHhhhc
Q 047309 170 E-HLLKT-YGMDEIYKPNELNYHDALQLFNMKAFK--IQKPLEECVQLSE 215 (218)
Q Consensus 170 ~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~i~~ 215 (218)
. .+... .+....+++.+++.++....+++.+.. ..-+++.+..|++
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2 33222 245678999999999999999987643 2233444444443
No 50
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.08 E-value=6.6e-09 Score=86.50 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=91.0
Q ss_pred cccccchhHH--HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHHHHHH
Q 047309 26 KLVGIDSRLE--ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 26 ~~~gR~~e~~--~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..+|.+..+. .+..+..... .....++|+|++|+|||+|++.+++.+.+.. ..+.|+ .. .....
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~----------~~~~~ 179 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SS----------EKFTN 179 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EH----------HHHHH
Confidence 3557655432 2333333321 3346789999999999999999999775543 233444 22 22222
Q ss_pred HHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---Hh-hHHhcCCCCC-CCCceEEEEeCCh------
Q 047309 102 QLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---QL-EYLAGKREWF-GSGSRIIVTSRDE------ 170 (218)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---~~-~~l~~~~~~~-~~~~~ilittr~~------ 170 (218)
.+...+... ....+.+.+.+ .-+|+|||++... .+ ..+...+... ..+..+++|+...
T Consensus 180 ~~~~~~~~~----------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 180 DFVNALRNN----------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred HHHHHHHcC----------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 232222110 12223333322 3489999997421 11 2222222111 2345677776542
Q ss_pred ---hhHhhcCCCceeeCCCCChhHHHHHHHHhhcCCC--CCCchhHhhhc
Q 047309 171 ---HLLKTYGMDEIYKPNELNYHDALQLFNMKAFKIQ--KPLEECVQLSE 215 (218)
Q Consensus 171 ---~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~--~~~~~~~~i~~ 215 (218)
.+.+++.....+++++.+.++..+++++.+.... -+.+.+.-||.
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAK 298 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2333344456799999999999999999875332 23444444444
No 51
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=5.4e-09 Score=87.73 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=88.3
Q ss_pred ccccccchh--HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechhhhccCchHHHHH
Q 047309 25 KKLVGIDSR--LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 25 ~~~~gR~~e--~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
++.+|..+. ......+..... .....++|+|++|+|||+|++.+++.+... ...++|+. ..++.
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~ 183 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPG-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFA 183 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcC-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHH
Confidence 345576554 333344433322 344678999999999999999999865432 22333442 22333
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---H-hhHHhcCCCCC-CCCceEEEEeCCh-----
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---Q-LEYLAGKREWF-GSGSRIIVTSRDE----- 170 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---~-~~~l~~~~~~~-~~~~~ilittr~~----- 170 (218)
..+...+.... .....+.+... ..-+|||||++... . .+.+...+... ..+..+|+|+...
T Consensus 184 ~~~~~~l~~~~--------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~ 254 (450)
T PRK14087 184 RKAVDILQKTH--------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLN 254 (450)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHh
Confidence 33333321100 11223333333 34488999996421 1 22232222211 3344678876542
Q ss_pred ----hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 ----HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++..++.++-.+.+++++.++..+++++.+.
T Consensus 255 ~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 255 GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 3445556677899999999999999998874
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=4.8e-09 Score=89.40 Aligned_cols=168 Identities=13% Similarity=0.116 Sum_probs=93.1
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+..++.|.+.+... .-...++++|++|+||||+|+.+++.+.-...... - .++ ....+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-~-pCg--------~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA-E-PCN--------KCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-C-CCc--------ccHHHH
Confidence 34556899999999999999763 22345789999999999999999986531100000 0 000 000000
Q ss_pred HHHH----HHhhccCCCccccc---ccHHHHHHh-hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-
Q 047309 102 QLLV----EILKLEKDSIWNVG---DGINILGSR-LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE- 170 (218)
Q Consensus 102 ~~~~----~~~~~~~~~~~~~~---~~~~~l~~~-l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~- 170 (218)
.+.. .+...........+ .+...+... ..++.-++|||+++.. .....++..+........+|++|.+.
T Consensus 81 ~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred HHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 0000 00000000000111 111111111 1355669999999864 34666666555434556666655443
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+... .+.+..+++.+++.++....+.+.+.
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence 23222 34578899999999999988887553
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.07 E-value=6.1e-09 Score=93.55 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=90.4
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-----c-ceEEEEechhhh---cc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-----E-GSSFLADVREKF---KN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-----~-~~~~~~~~~~~~---~~ 92 (218)
.....++||+.++.++...|... ...-++++|++|+|||++++.+++++.... . ..+|...+..-. ..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~---~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR---RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC---CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 45567999999999999888663 334567999999999999999999764321 1 112222222211 01
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---------HhhHHhcCCCCCCCC-ce
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---------QLEYLAGKREWFGSG-SR 162 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---------~~~~l~~~~~~~~~~-~~ 162 (218)
.+.+..-++.++..+. . .+.+.+|+||+++... +...++.+.. ..| .+
T Consensus 261 ~ge~e~~lk~ii~e~~------------------~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~ 318 (852)
T TIGR03345 261 KGEFENRLKSVIDEVK------------------A--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELR 318 (852)
T ss_pred chHHHHHHHHHHHHHH------------------h--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeE
Confidence 1112222222222211 0 2467899999986431 1112332221 334 45
Q ss_pred EEEEeCChhhH-------hhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 163 IIVTSRDEHLL-------KTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 163 ilittr~~~~~-------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+|-+|...+.. ...+.++.+.+++++.++..++++...
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 56555543221 112457789999999999999976554
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2.6e-09 Score=91.56 Aligned_cols=170 Identities=13% Similarity=0.135 Sum_probs=98.9
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc----cceEEEEechhhhccCchH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF----EGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 96 (218)
|..-..++|.+..++.|.+++... .-...++++|+.|+||||+|+.+++.+.-.- .....-.| + .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC-G--------~ 80 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC-G--------Q 80 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC-c--------c
Confidence 345567999999999999999763 2234678999999999999999999663210 00000000 0 0
Q ss_pred HHHHHHHHH----HHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEE
Q 047309 97 ISFQRQLLV----EILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVT 166 (218)
Q Consensus 97 ~~i~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilit 166 (218)
...+..+.. ++..........++++.+.+.... .++.-++|||+++.+ ..+..++..+..-...+.+|++
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred cHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 111111110 000011111122233333332221 345569999999875 4567777766544556666666
Q ss_pred eCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 167 SRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 167 tr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
|.+. .+... .+.+..+.+.+++.++..+.+.+.+.
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 5553 33222 23467899999999999999887653
No 55
>PRK06620 hypothetical protein; Validated
Probab=99.06 E-value=1.2e-09 Score=82.99 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=80.6
Q ss_pred cccccccccccchh--HHHHHHhhhcCCCCC-ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 20 KSETLKKLVGIDSR--LEELRSLMNKGPNDD-VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 20 ~~~~~~~~~gR~~e--~~~l~~~l~~~~~~~-~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
..+..+.++|..+. ...+..+........ .+.++|+|++|+|||+|++.+++.... .+.. ... .
T Consensus 12 ~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~---~~~-----~ 78 (214)
T PRK06620 12 KYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK---DIF-----F 78 (214)
T ss_pred CCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcc---hhh-----h
Confidence 33555667776333 333444443211011 267899999999999999987765421 1111 100 0
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCC-CCCceEEEEeCCh-----
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWF-GSGSRIIVTSRDE----- 170 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~-~~~~~ilittr~~----- 170 (218)
. ... . ...-+++|||++.... ..+...+... ..|..+|+|++..
T Consensus 79 ~---~~~-------------------------~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 79 N---EEI-------------------------L-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred c---hhH-------------------------H-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccc
Confidence 0 000 0 1224789999985432 1222221111 3456788887643
Q ss_pred --hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 --HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 --~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++.+++.+.-.+++++++.++...++++.+.
T Consensus 129 l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 129 LPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3455566677899999999999999988764
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=6e-09 Score=88.40 Aligned_cols=167 Identities=15% Similarity=0.120 Sum_probs=93.9
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc--cccceEEEEe-chhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH--EFEGSSFLAD-VREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~ 98 (218)
..-..++|.+...+.|.+++... .-...++++|++|+||||+|+.+++.+.- .....++.|. +.....
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~------- 81 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR------- 81 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc-------
Confidence 34556899999999999998763 22345699999999999999999987631 1111222110 000000
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE- 170 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~- 170 (218)
..-..+...........+.+. .+...+ .+++-++|||+++.. ..+..++..+........+|+++...
T Consensus 82 ---~~h~dv~el~~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 82 ---GAHPDVLEIDAASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred ---CCCCceEEecccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 000000000000011111111 111111 245569999999864 34666665554334455555555433
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+... .+....+++.+++.++..+++.+.+.
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHH
Confidence 33222 24467899999999999999998764
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.06 E-value=3.3e-09 Score=83.16 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=80.3
Q ss_pred cccccchhHHHHHHhhhc------------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhc
Q 047309 26 KLVGIDSRLEELRSLMNK------------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFK 91 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~------------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~ 91 (218)
.++|.++.-+++.++... ...+....++++|++|+|||++|+.+++.+.... ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 467766666555433211 1113456788999999999999999998653211 1111221 111
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------hHhhHHhcCCCCCCCCc
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------KQLEYLAGKREWFGSGS 161 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------~~~~~l~~~~~~~~~~~ 161 (218)
.++..... + .........+... . .-+|+||+++.. +....++..+.......
T Consensus 83 -----~~l~~~~~----g------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 -----ADLVGEYI----G------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -----HHhhhhhc----c------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 01100000 0 0001111222221 1 238999999752 23344544433333334
Q ss_pred eEEEEeCChhhHh-------hcCC-CceeeCCCCChhHHHHHHHHhhcC
Q 047309 162 RIIVTSRDEHLLK-------TYGM-DEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 162 ~ilittr~~~~~~-------~~~~-~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+++++...+... ..+. ...+++++++.++..+++++.+..
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4555554432211 1122 356899999999999999988754
No 58
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=2.8e-09 Score=92.22 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=95.9
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+..++.|.+.+... .-...++++|++|+||||+|+.+++.+.-.... ....+ .....+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~------~~~pC----g~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI------TATPC----GECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC------CCCCC----CCCHHHH
Confidence 45567999999999999999763 122447899999999999999999865221000 00000 0111111
Q ss_pred HHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-
Q 047309 102 QLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE- 170 (218)
Q Consensus 102 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~- 170 (218)
.+... +..........++++...+... ..++.-++|||+++.+ .....++..+..-....++|++|.+.
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 11100 0000000011122222222111 1355669999999864 34666666555434556666655543
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.+... .+++..+.+.+++.++..+++...+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 33222 3447789999999999999998865
No 59
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=6.2e-09 Score=89.85 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=97.1
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc----cceEEEEechhhhccCchHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF----EGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 97 (218)
..-..++|.+..++.|.+++... .-...++++|+.|+||||+|+.+++.+.-.- .....- .+...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~---------pCg~C 81 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT---------PCGVC 81 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC---------CCCcc
Confidence 45567899999999999999763 2234678999999999999999998653110 000000 00011
Q ss_pred HHHHHHHH----HHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEe
Q 047309 98 SFQRQLLV----EILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTS 167 (218)
Q Consensus 98 ~i~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilitt 167 (218)
..+..+.. .+..........++++...+.... .++.-++|||+++.. ..+..++..+..-.....+|++|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 12222210 000000011112222222222211 233458999999874 44667776655444556666665
Q ss_pred CC-hhhH-hhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 168 RD-EHLL-KTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 168 r~-~~~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+ ..+. ...+.+..+++.+++.++..+.+.+.+.
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 44 2222 2345578899999999999999988764
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1e-09 Score=94.82 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=95.1
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
|..-..++|.+..++.|..++... .-...++++|++|+||||+|+.+++.+.-... .....| .. ...+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pC-g~--------C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPC-GV--------CQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCC-cc--------cHHH
Confidence 345567999999999999999763 22356899999999999999999986521100 000000 00 0000
Q ss_pred HHHHH----HHhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 101 RQLLV----EILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
..+.. ++...........+.+...+... ..++.-++|||+++... .+..++..+......+.+|++|.+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 00000 00000000111111222222111 12455699999998754 3555555544334556777766543
Q ss_pred h-hHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 171 H-LLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 ~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
. +... .+.+..+.+.+++.++....+.+.+..
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 2 2111 234567899999999999999887653
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.9e-09 Score=90.09 Aligned_cols=171 Identities=17% Similarity=0.180 Sum_probs=97.3
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc--c-eEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE--G-SSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 97 (218)
|..-..++|.+..++.|...+... .-...++++|++|+||||+|+.+++.+.-... . ..+. .+. ..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~-~C~--------~C 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK-TCE--------QC 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC-CCC--------CC
Confidence 345556899999999998877652 22357889999999999999999996532110 0 0000 000 00
Q ss_pred HHHHHHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEe
Q 047309 98 SFQRQLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTS 167 (218)
Q Consensus 98 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilitt 167 (218)
..+..+... +...........+++...+... +.++.-++|||+++.. ..+..++..+........+|++|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 001111000 0000001111222222222221 1245668999999874 34666665555434555666544
Q ss_pred -CChhhHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 168 -RDEHLLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 168 -r~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+...+... .+....+++.+++.++...++.+.+..
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 43344333 244677999999999999999988753
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.02 E-value=3.1e-09 Score=79.78 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=40.6
Q ss_pred cccccccccccchhHHHHHHhhhcC--CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKG--PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~--~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
-|....+|+|.+..++.+.-++... ..+....+++|||||+||||||..+++++...|
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 4457788999999999987766531 124567899999999999999999999876554
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.02 E-value=1.4e-08 Score=83.15 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=91.8
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc----cc-c----------------e
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE----FE-G----------------S 80 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~----~~-~----------------~ 80 (218)
..-..++|.+..++.+.+++... .-...++++|++|+|||++|+.+++.+... +. + .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 34556899999999999999763 234568899999999999999999865311 10 0 0
Q ss_pred EEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCC
Q 047309 81 SFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFG 158 (218)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~ 158 (218)
..+ +.... . -....+.+...+...+ ..+++-++|||+++.. .....++..+....
T Consensus 89 ~~~-~~~~~----~-~~~~~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 89 IEI-DAASN----N-GVDDIREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred EEe-ecccc----C-CHHHHHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCc
Confidence 111 00000 0 0011111221111000 1234458999999764 34555655554334
Q ss_pred CCceEEEEeCChh-hHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 159 SGSRIIVTSRDEH-LLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 159 ~~~~ilittr~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
....+|+++.+.. +... .+....+++.+++.++..+++...+.
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH
Confidence 4556666665543 2222 23456789999999999999998664
No 64
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=2.9e-09 Score=95.54 Aligned_cols=188 Identities=14% Similarity=0.093 Sum_probs=103.2
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceE--EEEechhhhccCchHHHHHHHH
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS--FLADVREKFKNKGSVISFQRQL 103 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
.++||+.+++.|...+..-....+.++.+.|.+|+|||+|+++|.+.........+ ++....... +..++...++.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~i-pl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNI-PLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCC-chHHHHHHHHHH
Confidence 37999999999999998755577789999999999999999999997655421111 111111111 112234444444
Q ss_pred HHHHhhccCCCc---------------------------------c----ccc--------ccHHHHHHhh-CCCeEEEE
Q 047309 104 LVEILKLEKDSI---------------------------------W----NVG--------DGINILGSRL-QHKKVLLV 137 (218)
Q Consensus 104 ~~~~~~~~~~~~---------------------------------~----~~~--------~~~~~l~~~l-~~~~~liv 137 (218)
..++........ . +.. .....+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 443311111000 0 000 0112223333 45699999
Q ss_pred EeCCCC-hhHhhHHhcCCCCCCC-----CceEEE--EeCCh--hhHhhcCCCceeeCCCCChhHHHHHHHHhhcCCC-CC
Q 047309 138 IDDVVD-IKQLEYLAGKREWFGS-----GSRIIV--TSRDE--HLLKTYGMDEIYKPNELNYHDALQLFNMKAFKIQ-KP 206 (218)
Q Consensus 138 lD~~~~-~~~~~~l~~~~~~~~~-----~~~ili--ttr~~--~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~ 206 (218)
+||++. +..--.++..+..... ...+.. +.+.. ...........+.|.||+..+...|+....+... ..
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 999954 3221222222111111 112332 22222 1222223457899999999999999999986633 34
Q ss_pred CchhHhhh
Q 047309 207 LEECVQLS 214 (218)
Q Consensus 207 ~~~~~~i~ 214 (218)
.|..+.+.
T Consensus 240 ~p~~~~i~ 247 (849)
T COG3899 240 APLLELIF 247 (849)
T ss_pred chHHHHHH
Confidence 45544443
No 65
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.99 E-value=9.8e-09 Score=92.34 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=87.8
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-----c-cceEEEEechhhhc---cCch
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-----F-EGSSFLADVREKFK---NKGS 95 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~-~~~~~~~~~~~~~~---~~~~ 95 (218)
...+||+++++++.+.|... ..+-++++|++|+|||++|+.++.++... . ...+|..+...... ..+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~---~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR---TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc---ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 45899999999999999763 33456799999999999999999875321 1 12333333322111 0011
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---------HhhHHhcCCCCCCCCceEEEE
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---------QLEYLAGKREWFGSGSRIIVT 166 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---------~~~~l~~~~~~~~~~~~ilit 166 (218)
+..-++ ..+......++.+|+||+++... ....++.+... ....++|.+
T Consensus 256 ~e~rl~---------------------~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~Iga 313 (821)
T CHL00095 256 FEERLK---------------------RIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGA 313 (821)
T ss_pred HHHHHH---------------------HHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEe
Confidence 111122 22222223467899999995321 12233322110 223466666
Q ss_pred eCChhhHh-------hcCCCceeeCCCCChhHHHHHHHHh
Q 047309 167 SRDEHLLK-------TYGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 167 tr~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
|...+... .......+.+...+.++..++++..
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 66544322 1234677899999999988888754
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.5e-08 Score=85.27 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=95.9
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+...+.|...+... .-...++++|++|+||||+|+.+++.+. ...... ..+.....+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----------~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS-----------DPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----------CCccccHHH
Confidence 45567999999999999888763 1234789999999999999999998542 110000 000011111
Q ss_pred HHHHHHH----hhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC-
Q 047309 101 RQLLVEI----LKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD- 169 (218)
Q Consensus 101 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~- 169 (218)
..+.... ......+....+++...+... ..++.-++|||+++.. ..+..++..+..-.+...+|++|.+
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1111100 000001111122222222111 1244558999999864 3466666655544556667766544
Q ss_pred hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 170 EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 170 ~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
..+... .+....+++.+++.++..+.+.+.+..
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHH
Confidence 333332 345778999999999999999987643
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.1e-08 Score=86.94 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=94.3
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|..-..++|.+..++.|.+++... .-...++++|++|+||||+|+.+++.+.- ...... .++ ....
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~---pCg--------~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN---PCN--------DCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc---cCC--------CCHH
Confidence 345567999999999999999763 12345789999999999999999986521 100000 000 0001
Q ss_pred HHHHHH----HHhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC
Q 047309 100 QRQLLV----EILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 100 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
+..+.. ++...........+++...+... ..++.-++|||+++.. ..+..++..+..-...+.+|++|.+
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 111100 00000000111122222222111 1244558999999874 4466666655544456667766544
Q ss_pred h-hhHh-hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 E-HLLK-TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~-~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
. .+.. -.+.+..+++.+++.++....+...+.
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 159 HHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred hHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 3 2221 124467789999999998888777654
No 68
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.97 E-value=2.2e-08 Score=90.25 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=88.6
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEEechhhhcc---C
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLADVREKFKN---K 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~~~~~~~~~---~ 93 (218)
....++||+.++.++.+.|... ....++++|++|+|||++++.++.+..... ...+|...+...... .
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~ 252 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 252 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcC---CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh
Confidence 4456999999999999988763 345677999999999999999999764321 122222233321110 0
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh-CCCeEEEEEeCCCChh---------HhhHHhcCCCCCCCC-ce
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL-QHKKVLLVIDDVVDIK---------QLEYLAGKREWFGSG-SR 162 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~livlD~~~~~~---------~~~~l~~~~~~~~~~-~~ 162 (218)
+.+..-++.++. ... .+.+.+|+||+++... +...++.+.. ..| .+
T Consensus 253 g~~e~~lk~~~~---------------------~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~ 309 (857)
T PRK10865 253 GEFEERLKGVLN---------------------DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELH 309 (857)
T ss_pred hhhHHHHHHHHH---------------------HHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCe
Confidence 111112222222 211 2567899999997532 1233333222 333 45
Q ss_pred EEEEeCChhhHh-------hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 163 IIVTSRDEHLLK-------TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 163 ilittr~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+|-+|...+... ..+.++.+.+..-+.++...+++....
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 555555443211 123455677777799999998887653
No 69
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.96 E-value=2.6e-08 Score=89.89 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=89.4
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEEechhhhc---cC
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLADVREKFK---NK 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~~~~~~~~---~~ 93 (218)
....++||+.++.++...|... ....++++|++|+|||++++.+++++.... ...+|...+..... ..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR---TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC---CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 4456999999999999988763 335666899999999999999998764321 12222222222110 00
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh-CCCeEEEEEeCCCChh---------HhhHHhcCCCCCCCC-ce
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL-QHKKVLLVIDDVVDIK---------QLEYLAGKREWFGSG-SR 162 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~livlD~~~~~~---------~~~~l~~~~~~~~~~-~~ 162 (218)
+.+..- +...+.... .+++.+|+||+++... +...++.+.. ..| ..
T Consensus 248 g~~e~~---------------------l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~ 304 (852)
T TIGR03346 248 GEFEER---------------------LKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELH 304 (852)
T ss_pred hhHHHH---------------------HHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceE
Confidence 001111 112222221 2457899999997432 1223333222 333 45
Q ss_pred EEEEeCChhhHh-------hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 163 IIVTSRDEHLLK-------TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 163 ilittr~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+|.+|...+... ..+.++.+.+...+.++...+++....
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 555555443321 124567789999999999999987643
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.9e-08 Score=81.76 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=97.9
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.+|.....++|.+.....+...+... .-...++++|+.|+|||++|..+++.+...-....--......+ . -..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~-~---~c~ 90 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD-P---ASP 90 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC-C---CCH
Confidence 45667778999999999999999763 12346899999999999999999997633110000000000000 0 111
Q ss_pred HHHHHHHH-------Hhhc--cCC----CcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCC
Q 047309 99 FQRQLLVE-------ILKL--EKD----SIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFG 158 (218)
Q Consensus 99 i~~~~~~~-------~~~~--~~~----~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~ 158 (218)
.+..+... +... ... ..-.++. +..+.+.+ .++.-++|||+++.+ .....++..+..-.
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 22222111 0000 000 0011122 22333333 345669999999864 33455555554334
Q ss_pred CCceEEEEeCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 159 SGSRIIVTSRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 159 ~~~~ilittr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
....+|++|... .+... .+....+.+.|++.++..+++.+..
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 445555555443 22222 2346789999999999999999853
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.5e-08 Score=86.61 Aligned_cols=168 Identities=14% Similarity=0.140 Sum_probs=93.1
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+..++.|..++... .-...++++|++|+||||+|+.+++.+.-..... .- .++ ....+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~-pcg--------~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-AT-PCG--------VCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CC-CCC--------CCHHHH
Confidence 35567899999999999999762 2234578999999999999999998652110000 00 000 000011
Q ss_pred HHHH----HHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCCh-
Q 047309 102 QLLV----EILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDE- 170 (218)
Q Consensus 102 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~- 170 (218)
.+.. ++...........+.+...+.... .++.-++|||+++... ....++..+..-.....+|++|.+.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 1000 000000000111112222221111 2455699999998754 3566666555434556666655443
Q ss_pred hhH-hhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLL-KTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+. .-.+.+..+++.+++.++..+.+.+.+.
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 222 1123356789999999999998887653
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=3e-08 Score=81.51 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=91.1
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc--------ccceEEEEechhhhccC
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE--------FEGSSFLADVREKFKNK 93 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--------~~~~~~~~~~~~~~~~~ 93 (218)
..-..++|.+..++.+.+.+... .-.+.++++|++|+|||++|+.+++.+... +....+. .... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~~-~~~ 88 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDAA-SNN 88 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--eccc-cCC
Confidence 45567899999999999999763 234578899999999999999998865331 1111111 1110 000
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCC-h
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRD-E 170 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~-~ 170 (218)
-.+....++..+...+ ..+++-++++|+++... .+..++..+......+.+|+++.. .
T Consensus 89 --~~~~i~~l~~~~~~~p-----------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 89 --SVDDIRNLIDQVRIPP-----------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred --CHHHHHHHHHHHhhcc-----------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 0112222222211100 01345589999997643 355555444322334455555433 2
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..... .+....++..+++.++....+...+.
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHH
Confidence 22222 23456799999999999999887654
No 73
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.94 E-value=2.7e-08 Score=79.55 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=108.8
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
...+.+.+|+.++..+..++...+..-+..+.|+|.+|+|||.+++++.+.... ..+|+ ++.+.+. +...++
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~-n~~ecft----~~~lle 74 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWL-NCVECFT----YAILLE 74 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceee-ehHHhcc----HHHHHH
Confidence 455679999999999999998876444567799999999999999999986532 23455 7777766 778888
Q ss_pred HHHHHHh-hccCCCc-----ccccccHHHHHHh--hC--CCeEEEEEeCCCChhHhh-----HHhcCCCC-CCCCceEEE
Q 047309 102 QLLVEIL-KLEKDSI-----WNVGDGINILGSR--LQ--HKKVLLVIDDVVDIKQLE-----YLAGKREW-FGSGSRIIV 165 (218)
Q Consensus 102 ~~~~~~~-~~~~~~~-----~~~~~~~~~l~~~--l~--~~~~livlD~~~~~~~~~-----~l~~~~~~-~~~~~~ili 165 (218)
.++.... ....... ....+.+..+.++ .. ++.++||+|+++...+.+ .+...... ..+.+.|++
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 8888763 1111111 1122334444442 22 458999999998654432 22211111 123344444
Q ss_pred EeC--ChhhHhhcCCCc--eeeCCCCChhHHHHHHHHhhcC
Q 047309 166 TSR--DEHLLKTYGMDE--IYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 166 ttr--~~~~~~~~~~~~--~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
..- ......+++... .+..+.-+.++...++.+.-++
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~ 195 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG 195 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc
Confidence 322 223333344433 4788899999999998876543
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=1.1e-08 Score=91.14 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=95.1
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+..++.|.+++... .-...++++|+.|+||||+|+.+++.+. ....... .+. ....+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg--------~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCG--------ECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCc--------ccHHH
Confidence 34556999999999999999762 1224578999999999999999998762 1100000 000 11111
Q ss_pred HHHHHH------HhhccCCCcccccccHHHHHH----hhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeC
Q 047309 101 RQLLVE------ILKLEKDSIWNVGDGINILGS----RLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSR 168 (218)
Q Consensus 101 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~----~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr 168 (218)
..+... +..........++.+...... -..++.-++|||+++.+ ...+.|+..+..-...+.+|++|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 111100 000000011112222221111 11244558999999874 345666666654455666666654
Q ss_pred Ch-hhHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 169 DE-HLLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 169 ~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+. .+... .+.++.|++.+++.++..+++.+.+
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 43 34332 3457789999999999999998865
No 75
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.92 E-value=3.6e-08 Score=79.45 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=85.3
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
|.....++|.+...+.+..++... .-...++++|++|+|||++|+.+++..... ..++ +... . . . ...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i-~~~~-~-~---~-~~i 84 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFV-NGSD-C-R---I-DFV 84 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEe-ccCc-c-c---H-HHH
Confidence 345567899999999999999753 334677779999999999999999865322 2222 2221 1 0 1 111
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHh-hHHhcCCCCCCCCceEEEEeCChh-hHhh-
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQL-EYLAGKREWFGSGSRIIVTSRDEH-LLKT- 175 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~-~~l~~~~~~~~~~~~ilittr~~~-~~~~- 175 (218)
+..+.......+ ..+..-+||||+++.. ... ..+...+.....++.+|+|+.... +...
T Consensus 85 ~~~l~~~~~~~~----------------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 85 RNRLTRFASTVS----------------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHHHhhc----------------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 111111110000 0133458999999754 222 222222222245677888876542 1111
Q ss_pred cCCCceeeCCCCChhHHHHHHHH
Q 047309 176 YGMDEIYKPNELNYHDALQLFNM 198 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~ 198 (218)
.+....+.++..+.++..+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHH
Confidence 23355788888888887766543
No 76
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.6e-08 Score=83.80 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=93.7
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCc-eEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDV-RMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~-~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
..-..++|.+...+.|.+++.. .+. ..++++||+|+||||+|+.+++.+.-. +....|.......+. ...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~----~c~ 85 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG----ECE 85 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC----CCH
Confidence 4556799999999999999976 233 458899999999999999999866321 000000000000000 011
Q ss_pred HHHHHHHHH----hhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeC
Q 047309 99 FQRQLLVEI----LKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSR 168 (218)
Q Consensus 99 i~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr 168 (218)
.++.+.... ...........+++....... ..+.+-++|||+++... .+..++..+....+.+.+|+++.
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 111111100 000000111122222221111 12445689999998643 46666655554345566666554
Q ss_pred C-hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 169 D-EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 169 ~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+ ..+... .+....+++.+++.++..+.+...+.
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3 333322 22356789999999999998888653
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.1e-08 Score=84.48 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=95.2
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|..-..++|.+..++.|.+++... .-...++++|++|+||||+|+.+++.+.- +.... . .++ ....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~-pCg--------~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--T-PCG--------VCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--C-ccc--------ccHH
Confidence 345567999999999999999762 22335789999999999999999986531 10000 0 000 1111
Q ss_pred HHHHHHH------HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEe
Q 047309 100 QRQLLVE------ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTS 167 (218)
Q Consensus 100 ~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilitt 167 (218)
+..+... +..........++.+....... ..+..-++|||+++.. .....|+..+........+|++|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 1111100 0000000111122221111111 1244559999999864 44666666665445556666655
Q ss_pred CC-hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 168 RD-EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 168 r~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+ ..+... .+....+++.+++.++..+++.+.+.
T Consensus 156 te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 43 333322 34467899999999999999987654
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=8.9e-09 Score=88.10 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=92.4
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|++..++.+.+++... .-...++++|++|+|||++|+.+++.+.-......-. ++ -...++
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--Cg--------~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--CN--------SCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--Cc--------ccHHHH
Confidence 35567999999999999998653 2235788999999999999999999763111000000 00 011111
Q ss_pred HHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC-h
Q 047309 102 QLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD-E 170 (218)
Q Consensus 102 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~-~ 170 (218)
.+... +...........+.+...+... ..++.=++|||+++.. ..+..++..+........+|++|.. .
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 11100 0000000011111121111111 1123347999999864 3455565544433344555555543 3
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+... .+++..+++.+++.++....+...+.
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHH
Confidence 33222 34567899999999999999988653
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=6.9e-08 Score=79.60 Aligned_cols=162 Identities=14% Similarity=0.065 Sum_probs=90.4
Q ss_pred ccccccchhHHHHHHhhhcCCC-------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 25 KKLVGIDSRLEELRSLMNKGPN-------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~-------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
..++|.+..++.|.+++..... .-...++++||+|+|||++|+.+++.+.-.... .- .++. .
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~-~Cg~--------C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EP-GCGE--------C 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CC-CCCC--------C
Confidence 4588999999999999976320 134678899999999999999999864211100 00 0000 0
Q ss_pred HHHHHHHHHHhhc------cCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEE
Q 047309 98 SFQRQLLVEILKL------EKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRII 164 (218)
Q Consensus 98 ~i~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~il 164 (218)
..+..+... ... ........+.+.. +.+.+ .++.-++|||+++... ....++..+..-..+..+|
T Consensus 74 ~~C~~~~~~-~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 74 RACRTVLAG-THPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred HHHHHHhcC-CCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 111111100 000 0000011111111 11211 2445589999998643 3445555544334556666
Q ss_pred EEeCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 165 VTSRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 165 ittr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
++|.+. .+... .+....+.+.+++.++..+++.+.
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 666554 33322 345778999999999999988754
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.1e-08 Score=86.87 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=95.2
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
..-..++|.+..++.|.+++... .-...++++|++|+||||+|+.+++.+.-. .....|.....+.+. ....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg----~C~s 86 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG----ECES 86 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc----cCHH
Confidence 45567999999999999988752 223458899999999999999999865211 000001100000000 1111
Q ss_pred HHHHHHHH----hhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCC
Q 047309 100 QRQLLVEI----LKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 100 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
++.+.... ...........+++...+... ..+.+-++|||+++... ....|+..+..-.....+|++|.+
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 11111100 000000111122222222222 12445589999998753 355666555433344555555543
Q ss_pred -hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 -EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 -~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+... .+....+++.+++.++....+.+.+.
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHH
Confidence 333322 34578899999999999988887653
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.90 E-value=1.1e-07 Score=70.75 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=47.4
Q ss_pred CCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 131 HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 131 ~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
+.+-++|||+++... ....++..+....+...+|+++.+. .+... .+....+++.|++.++..+++.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 456689999998643 3556666555445556677766654 22222 234678999999999999999887
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1e-07 Score=77.86 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=99.1
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccc-cceEEEEechhhhccCchH
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEF-EGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 96 (218)
..|.....++|.+...+.|.+.+... .-...++++|+.|+||+++|..+++.+ ++.. ........ ..... .+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~-~~~l~-~~~~ 88 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP-PTSLA-IDPD 88 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc-ccccc-CCCC
Confidence 35556678999999999999998763 123468899999999999999999865 2221 10000000 00000 0000
Q ss_pred HHHHHHHHHHHhhcc---------CC-----CcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCC
Q 047309 97 ISFQRQLLVEILKLE---------KD-----SIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKRE 155 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~---------~~-----~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~ 155 (218)
...++.+... ...+ .. ..-.++. +..+.+.+ .+.+-++|||+++.. .....++..+.
T Consensus 89 c~~c~~i~~~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 89 HPVARRIAAG-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred ChHHHHHHcc-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 1112221110 0000 00 0011122 22222332 255679999999753 34555655554
Q ss_pred CCCCCceEEEEeCChh-hHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 156 WFGSGSRIIVTSRDEH-LLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 156 ~~~~~~~ilittr~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.-..+..+|++|.+.. +... .+....+.+.+++.++..+++.+..
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 4345566777776653 2222 3457789999999999999999874
No 83
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.89 E-value=6.7e-08 Score=79.82 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=90.1
Q ss_pred ccccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF 90 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~ 90 (218)
...-..+.|-+...++|.+.+... +-..++.++++|++|+|||+||+.+++.....|- .+ ....
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i-~~s~-- 214 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RV-VGSE-- 214 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EE-ehHH--
Confidence 344456889999999888776421 1134678999999999999999999987543321 11 1111
Q ss_pred ccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh------------H----hhHHhcCC
Q 047309 91 KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK------------Q----LEYLAGKR 154 (218)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~------------~----~~~l~~~~ 154 (218)
+..... + .....+...+.......+.+|+||+++... . +..++..+
T Consensus 215 --------l~~k~~----g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 215 --------FVQKYL----G------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred --------HHHHhc----c------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 101000 0 000111222333334678899999986420 1 22222222
Q ss_pred CC--CCCCceEEEEeCChhhHh-h-c---CCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 155 EW--FGSGSRIIVTSRDEHLLK-T-Y---GMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 155 ~~--~~~~~~ilittr~~~~~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.. ...+..+|.||...+... . + .-+..+++++-+.++..++|+.+...
T Consensus 277 d~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 277 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred hccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 21 123456677776543321 1 1 22566899999999999999877644
No 84
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.89 E-value=2.7e-08 Score=88.06 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=86.3
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-----c-cceEEEEechhhhccCchHHH
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-----F-EGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 98 (218)
..++||+.++.++.+.|... ....++++|++|+|||++|+.+++..... + ...+|......
T Consensus 186 ~~liGR~~ei~~~i~iL~r~---~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~---------- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS---------- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH----------
Confidence 45999999999999988773 33556789999999999999999864221 1 11222211111
Q ss_pred HHHHHHHHHhhccCCCcccccccH-HHHHHhhCCCeEEEEEeCCCCh----------hHhhHHhcCCCCCCCC-ceEEEE
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGI-NILGSRLQHKKVLLVIDDVVDI----------KQLEYLAGKREWFGSG-SRIIVT 166 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~livlD~~~~~----------~~~~~l~~~~~~~~~~-~~ilit 166 (218)
+ +. +. .......... ..+...-...+.+|+||+++.. .+...++.++. ..+ .++|-+
T Consensus 253 l----la---G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgA 321 (758)
T PRK11034 253 L----LA---GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGS 321 (758)
T ss_pred H----hc---cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEec
Confidence 0 00 00 0000111111 1122222345679999999632 12222332222 233 445554
Q ss_pred eCChhhHh-------hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 167 SRDEHLLK-------TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 167 tr~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
|...+... ..+.++.+.+++.+.++..++++....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 44433211 124567899999999999999997643
No 85
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.88 E-value=6e-08 Score=81.99 Aligned_cols=162 Identities=17% Similarity=0.243 Sum_probs=89.2
Q ss_pred cccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-----cceEEEEec
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-----EGSSFLADV 86 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-----~~~~~~~~~ 86 (218)
.....+.|.+..++++.+.+... .-..++-++++||+|+|||++|+.+++.+...+ ....|+ ++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NI 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-ec
Confidence 44556888999999998876420 113356789999999999999999999775442 122233 22
Q ss_pred hhhh--ccC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHh-hCCCeEEEEEeCCCChh---------H-----hh
Q 047309 87 REKF--KNK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR-LQHKKVLLVIDDVVDIK---------Q-----LE 148 (218)
Q Consensus 87 ~~~~--~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~livlD~~~~~~---------~-----~~ 148 (218)
.... ..+ +......+.+ ....+.. ..+++.+|+||+++... . +.
T Consensus 258 ~~~eLl~kyvGete~~ir~i------------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLI------------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred cchhhcccccchHHHHHHHH------------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 1110 000 0001111111 1111111 13568899999997421 1 22
Q ss_pred HHhcCCCCCC--CCceEEEEeCChhhHh-hc----CCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 149 YLAGKREWFG--SGSRIIVTSRDEHLLK-TY----GMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 149 ~l~~~~~~~~--~~~~ilittr~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.++..+.... .+..+|.||...+... .+ +-+..+++++.+.++..++|+.++..
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 3333332111 2223333444333211 11 22456999999999999999998643
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.1e-07 Score=76.43 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=94.8
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc------cccceEEEEechhhhccCchHHH
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH------EFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
...+|.+...+.+.+++... .-....+++|+.|+|||++|+.+++.+.. +.+...|...-+... -.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i-----~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSI-----GVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCC-----CHH
Confidence 45789888899999998653 23356789999999999999999986521 112112211001000 111
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCC--hhHhhHHhcCCCCCCCCceEEEEeCChhh-Hhh
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSRIIVTSRDEHL-LKT 175 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~--~~~~~~l~~~~~~~~~~~~ilittr~~~~-~~~ 175 (218)
-.+.+...+...+ ..+++=++|||+++. ...+..++..+.....++.+|++|.+.+. ...
T Consensus 77 ~ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 77 DIRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 1222222211100 124455888888865 44577888777766677788887766532 121
Q ss_pred -cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 176 -YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 176 -~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.+.+..+++.+++.++....+.+..
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHh
Confidence 2446789999999999998887764
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.86 E-value=6.1e-08 Score=76.79 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=70.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccccc--ceEEE-EechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFE--GSSFL-ADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
..++++|++|+|||++|+.+++.+..... ...++ ... .++ ...+.+. +.......+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----------~~l----~~~~~g~------~~~~~~~~~~ 118 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----------DDL----VGQYIGH------TAPKTKEILK 118 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----------HHH----hHhhccc------chHHHHHHHH
Confidence 46889999999999999988886543211 11122 111 111 1111110 0011122222
Q ss_pred HhhCCCeEEEEEeCCCCh-----------hHhhHHhcCCCCCCCCceEEEEeCChhhHhhc--------CCCceeeCCCC
Q 047309 127 SRLQHKKVLLVIDDVVDI-----------KQLEYLAGKREWFGSGSRIIVTSRDEHLLKTY--------GMDEIYKPNEL 187 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~-----------~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~--------~~~~~~~l~~L 187 (218)
+. ..-+|+||+++.. .....++..+.....+.++|+++....+...+ .-...++++++
T Consensus 119 ~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 119 RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred Hc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 22 2248999999732 11234444433333455666665543222111 11356999999
Q ss_pred ChhHHHHHHHHhhcC
Q 047309 188 NYHDALQLFNMKAFK 202 (218)
Q Consensus 188 ~~~e~~~l~~~~~~~ 202 (218)
+.++..++++..+..
T Consensus 196 ~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 196 SEAELLVIAGLMLKE 210 (284)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987644
No 88
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4e-08 Score=82.84 Aligned_cols=170 Identities=18% Similarity=0.170 Sum_probs=103.5
Q ss_pred cccccccccchhHHHHHHhhhcCCC---------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPN---------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~---------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..-.++-|-++.+.++.+++..... ..++-|++|||+|+|||.||+.++.++.-.| +-....+..
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf----~~isApeiv-- 260 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF----LSISAPEIV-- 260 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce----Eeecchhhh--
Confidence 3456788999999999888865332 4467899999999999999999998764332 111222211
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH-------------hhHHhcCC---CC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ-------------LEYLAGKR---EW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~-------------~~~l~~~~---~~ 156 (218)
.+....+...+.+.|.+.....+++++||+++.... +..++..+ ..
T Consensus 261 ------------------SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 261 ------------------SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred ------------------cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 112223344555666666678899999999974211 22333322 21
Q ss_pred C-CCCceEEE---EeCChhh---HhhcCC-CceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 157 F-GSGSRIIV---TSRDEHL---LKTYGM-DEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 157 ~-~~~~~ili---ttr~~~~---~~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
. ..|..|++ |+|.+.+ +.+.+. +..+.|.-=++.+..++|+..+.+... ..=++++||+
T Consensus 323 ~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733|consen 323 EKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred cccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence 1 12333443 5565433 222233 456888888888888888887765543 3445666654
No 89
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=6.8e-08 Score=83.17 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=92.9
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+...+.|.+++... .-...++++|++|+|||++|+.+++.+.-.. ....-+ . ....+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC---g--------~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC---N--------TCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC---c--------ccHHH
Confidence 34456899999999999998762 1235788999999999999999998653110 000000 0 11111
Q ss_pred HHHHHHH----hhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC
Q 047309 101 RQLLVEI----LKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 101 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
..+.... ...........+. +..+.+.+ .++.-+||||+++.. .....|+..+..-.....+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 1111100 0000000001111 11121111 345569999999864 3455666555432344556665554
Q ss_pred -hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 170 -EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 170 -~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
..+... .+....+++.+++.++....+.+.+..
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 333322 234567899999999999999886543
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.9e-08 Score=86.85 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=96.6
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc-c---eEEEEechhhhccCchHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE-G---SSFLADVREKFKNKGSVI 97 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 97 (218)
.....++|.+..++.|.+++... .-...++++|++|+||||+|+.+++.+.-... . ..+-.| . ..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c-g--------~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC-G--------VG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC-c--------cc
Confidence 45567999999999999999763 22346889999999999999999996532111 0 000000 0 11
Q ss_pred HHHHHHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEe
Q 047309 98 SFQRQLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTS 167 (218)
Q Consensus 98 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilitt 167 (218)
..+..+... +...........+++...+... ..+..-++|||+++... ....++..+..-...+.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 111111110 0000001111222222222111 12344589999998643 4666665555445566676655
Q ss_pred CC-hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 168 RD-EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 168 r~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+ ..+... .+.+..+++.+++.++....+.+.+.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 43 333222 23467899999999999999988754
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.85 E-value=9.2e-08 Score=66.71 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEcCCCccHHHHHHHHHHhhc
Q 047309 52 IGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++|+|++|+|||++++.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 92
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.6e-07 Score=78.31 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=90.9
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc---c-cceEEEEechhhhc-cCchHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE---F-EGSSFLADVREKFK-NKGSVI 97 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~---~-~~~~~~~~~~~~~~-~~~~~~ 97 (218)
.-..++|.+...+.|.+++... .-...++++|++|+||||+|+.+++.+.-. . ..+..+.++..... ...++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 4456899999999999999763 223456789999999999999999865310 0 00000000000000 000000
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC-
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD- 169 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~- 169 (218)
..........+. +..+.... .++.-++|||+++.. .....++..+........+|++|.+
T Consensus 92 -----------eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 92 -----------EIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred -----------EEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 000000011111 11122111 245669999999864 3455665554433344555555443
Q ss_pred hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+... .+....+.+.+++.++....+.+.+.
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHH
Confidence 333222 24466899999999999999998664
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=1.5e-07 Score=79.17 Aligned_cols=167 Identities=15% Similarity=0.213 Sum_probs=91.6
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-----cceEEEEechhhhccCchH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-----EGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 96 (218)
..-..++|.+..++.|.+++... .-...++++|++|+|||++|+.+++.+...- ..+..+.++........ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~-~ 90 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS-L 90 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC-C
Confidence 35567999999999999999762 2235688999999999999999998653210 00000000000000000 0
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
.+....+......+.+.. +.+.+ .+.+-++|||+++.. .....++..+........+|++|.+
T Consensus 91 ---------d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 91 ---------DVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred ---------ceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 000000000000111111 11111 245668999999764 3345555554443445566666643
Q ss_pred h-hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 E-HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
. .+... .+....+++.+++.++....+.+.+.
T Consensus 161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 2 22222 23467899999999999999887654
No 94
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.82 E-value=7.7e-08 Score=80.14 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=90.2
Q ss_pred ccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
......|.+.++++|.+++... .-..++.++++|++|+|||++|+.+++.....|-. + ...+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V-~~seL--- 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---V-VGSEL--- 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---E-ecchh---
Confidence 4456789999999998887421 11345678899999999999999999976544311 1 11110
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~ 156 (218)
..... + .....+...+.....+.+.+|+||+++... .+..++..+..
T Consensus 254 -------~~k~~----G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 254 -------IQKYL----G------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred -------hhhhc----c------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 00000 0 000112222333334667899999975311 01122222211
Q ss_pred --CCCCceEEEEeCChhhHhh-c----CCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 157 --FGSGSRIIVTSRDEHLLKT-Y----GMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 157 --~~~~~~ilittr~~~~~~~-~----~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
...+..||.+|...+.... + .....+++++.+.++..++|+.++...
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 1234567777765443222 1 124579999999999999999876443
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-07 Score=74.10 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=95.4
Q ss_pred cccccccccchhHHHHHHhhhcCCC----------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPN----------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~----------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
.+....-|-++.+++|++.+.-+-. +.++-|++|||||+|||-||++|+++....|-. + .+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr---v--vg---- 218 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR---V--VG---- 218 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE---e--cc----
Confidence 4445577889999999888854221 557788999999999999999999965444321 1 11
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh-CCCeEEEEEeCCCChh------------H----hhHHhcCC
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL-QHKKVLLVIDDVVDIK------------Q----LEYLAGKR 154 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~livlD~~~~~~------------~----~~~l~~~~ 154 (218)
.++.+.++ +. ..+++..+.+.. ...+.+|+||+++... + +-.++..+
T Consensus 219 -----SElVqKYi----GE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 219 -----SELVQKYI----GE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred -----HHHHHHHh----cc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 11222211 11 112333333333 4668999999986321 1 12333333
Q ss_pred CCC--CCCceEEEEeCChhhHhh--c---CCCceeeCCCCChhHHHHHHHHhhcCCC-CCCchhHhhh
Q 047309 155 EWF--GSGSRIIVTSRDEHLLKT--Y---GMDEIYKPNELNYHDALQLFNMKAFKIQ-KPLEECVQLS 214 (218)
Q Consensus 155 ~~~--~~~~~ilittr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~~~~~~~i~ 214 (218)
.-+ ..+.+||..|...+.+.- + +-+-.++++.=+.+...+.|+=|...-. .++-+++.+|
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la 350 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH
Confidence 211 344588876555443222 1 2255688886667777777776654322 2333444444
No 96
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=1.6e-07 Score=77.01 Aligned_cols=172 Identities=14% Similarity=0.168 Sum_probs=106.1
Q ss_pred cccccccccchhHHHHHHhhhcCC-CCCceEEEEEcCCCccHHHHHHHHHHhhcccccc--eEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP-NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEG--SSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~-~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 98 (218)
..+..++||+.|++.+..++...- ....+.++|.|.+|+|||.+...++.+....... .+++.|. +... ...
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~-sl~~----~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT-SLTE----ASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec-cccc----hHH
Confidence 456679999999999999996633 3567899999999999999999999877655433 3555443 3222 455
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhh-CCC-eEEEEEeCCCChhH------hhHHhcCCCCCCCCceEEEE--eC
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRL-QHK-KVLLVIDDVVDIKQ------LEYLAGKREWFGSGSRIIVT--SR 168 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~-~~livlD~~~~~~~------~~~l~~~~~~~~~~~~ilit--tr 168 (218)
++..++..+........... .....+.... +.+ .+|+|+|+.|.... +.-+.+. ..+++++++. .-
T Consensus 222 iF~kI~~~~~q~~~s~~~~~-~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp---~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGM-QHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP---KLPNSRIILIGIAN 297 (529)
T ss_pred HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc---cCCcceeeeeeehh
Confidence 66666655533322222222 2334444444 333 78999999975321 1111111 1244555443 22
Q ss_pred ChhhHhh----cC-----CCceeeCCCCChhHHHHHHHHhhcC
Q 047309 169 DEHLLKT----YG-----MDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 169 ~~~~~~~----~~-----~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.-++..+ +. ....+..+|.+.++..++|+++...
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 2222222 22 1456889999999999999998743
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=98.81 E-value=1.7e-07 Score=74.35 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=71.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...++++|++|+|||++|+.+++.+.... ...-++. +. ..++...+. +.. .......+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~--------~~~l~~~~~----g~~------~~~~~~~l~ 119 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT--------RDDLVGQYI----GHT------APKTKEVLK 119 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec--------HHHHHHHHh----ccc------hHHHHHHHH
Confidence 44688999999999999999988653211 1111221 11 111111111 000 001112222
Q ss_pred HhhCCCeEEEEEeCCCCh-----------hHhhHHhcCCCCCCCCceEEEEeCChhhHhhc--------CCCceeeCCCC
Q 047309 127 SRLQHKKVLLVIDDVVDI-----------KQLEYLAGKREWFGSGSRIIVTSRDEHLLKTY--------GMDEIYKPNEL 187 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~-----------~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~--------~~~~~~~l~~L 187 (218)
.. .+ -+|+||+++.. +....+...+.....+..||+++....+...+ +-...++++++
T Consensus 120 ~a-~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 120 KA-MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred Hc-cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 21 22 39999999642 12334444343334456666766543332111 12457999999
Q ss_pred ChhHHHHHHHHhhcC
Q 047309 188 NYHDALQLFNMKAFK 202 (218)
Q Consensus 188 ~~~e~~~l~~~~~~~ 202 (218)
+.++..+++...+..
T Consensus 197 t~~el~~I~~~~l~~ 211 (287)
T CHL00181 197 TPEELLQIAKIMLEE 211 (287)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988743
No 98
>PF14516 AAA_35: AAA-like domain
Probab=98.81 E-value=3.6e-07 Score=74.06 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=99.9
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhh-hccCchHH
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREK-FKNKGSVI 97 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 97 (218)
+.+..+..++.|...-+.+.+.+.. .+..+.|.|+..+|||+|+..+.+.+.+..-.++++ ++... .....+..
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHH
Confidence 3456677789999666666666653 247999999999999999999998776554444444 33332 11222245
Q ss_pred HHHHHHHHHHhhccCC----------CcccccccHHHHHHhh---CCCeEEEEEeCCCChh-------HhhHHhcCCCCC
Q 047309 98 SFQRQLLVEILKLEKD----------SIWNVGDGINILGSRL---QHKKVLLVIDDVVDIK-------QLEYLAGKREWF 157 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~l---~~~~~livlD~~~~~~-------~~~~l~~~~~~~ 157 (218)
...+.++..+...-.. ...+.......+.+++ .+++++|+||+++..- ++-.++......
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5555555444332211 1112233444455543 2679999999997532 121111111110
Q ss_pred C------CCceEEEEeCCh-hhHhh-----cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 158 G------SGSRIIVTSRDE-HLLKT-----YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 158 ~------~~~~ilittr~~-~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
. +..++++....+ ..... ++....+.|++|+.+|...|++++-
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 1 112333322211 11111 2234579999999999999999873
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=2e-07 Score=81.49 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=92.4
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+..++.|.+++... .-...++++||+|+|||++|+.+++.+.-......+- .+.. +.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~-----------C~ 80 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQE-----------CI 80 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhH-----------HH
Confidence 45566899999999999999763 2235678999999999999999998652110000000 0000 00
Q ss_pred HHHH-H--HhhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeC-Ch
Q 047309 102 QLLV-E--ILKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSR-DE 170 (218)
Q Consensus 102 ~~~~-~--~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr-~~ 170 (218)
.... . +...........+.+ ..+.+.+ .++.-++|||+++.. ..+..++..+..-.....+|++|. ..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 0000 0 000000000111111 1111111 245569999999864 346666655543344455555444 33
Q ss_pred hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+... .+++..+++.+++.++....+...+.
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 33322 34567899999999999999987543
No 100
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=3.2e-07 Score=79.10 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=93.8
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|..-..++|.+...+.|.+++... .-...++++|+.|+|||++|+.+++.+.- ......-+ . ....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC---~--------~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPC---N--------ECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---C--------ccHH
Confidence 345667999999999999999763 23456778999999999999999986521 10000000 0 1111
Q ss_pred HHHHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCC
Q 047309 100 QRQLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 100 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
+..+... +...........+.+...+... ..++.-++|||+++.. ..+..++..+..-.....+|++|..
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1111100 0000000111111111111111 1245568999999875 3466666555433444455554433
Q ss_pred -hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 -EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 -~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+... .+....++..+++.++....+...+.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHH
Confidence 333222 24467789999999999999887654
No 101
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.77 E-value=8.3e-08 Score=73.10 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=43.1
Q ss_pred cccccccccccchhHHHHHHhhhc-CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNK-GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~-~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
.+.....++|-+.+.+.|.+.... ........+++||+.|+|||++++++...+....
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 345566799988888887655533 1114456788999999999999999999876554
No 102
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.7e-07 Score=77.10 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=93.6
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccc--eEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEG--SSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 98 (218)
..-..++|.+...+.|...+... .-....+++|++|+|||++|+.+++.+. ..... .+.. ..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~-------------C~ 75 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT-------------CI 75 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc-------------cH
Confidence 45567999999999999999763 2234568999999999999999998752 11110 0000 00
Q ss_pred HHHHHHHH----HhhccCCCcccccccHHHHHHh--h--CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeC
Q 047309 99 FQRQLLVE----ILKLEKDSIWNVGDGINILGSR--L--QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSR 168 (218)
Q Consensus 99 i~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~--l--~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr 168 (218)
.+..+... +...........+++...+... . .+..-++|||+++.. .....++..+..-.+.+.+|++|.
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 00000000 0000000001112222222111 0 134558999999874 345566655544455667777765
Q ss_pred Chh-hHh-hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 169 DEH-LLK-TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 169 ~~~-~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+.. +.. -.+....+++.+++.++....+.+.+.
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 532 211 123467899999999999999987654
No 103
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=8.9e-08 Score=83.15 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=93.7
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..-..++|.+...+.|..++... .-...++++|++|+|||++|+.+++.+.-........ .+ .....+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~-----~c----~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR-----PC----GTCEMCR 81 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-----CC----ccCHHHH
Confidence 35567999999999999988753 2235678999999999999999998763111000000 00 0111222
Q ss_pred HHHHHHh----hccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 102 QLLVEIL----KLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 102 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
.+..... ..........+.+.. +.+.+ .+..-++|||+++.. .....++..+........+|+++.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 2211100 000001111112111 11111 244569999999864 34556655444334455566655443
Q ss_pred -hhHhh-cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 171 -HLLKT-YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 -~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+... .+....+++.+++..+....+.+.+..
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence 33222 234567899999999999888877543
No 104
>CHL00176 ftsH cell division protein; Validated
Probab=98.73 E-value=3.1e-07 Score=80.02 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=87.4
Q ss_pred ccccccccchhHHHHHHhhhc---CC------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccC
Q 047309 23 TLKKLVGIDSRLEELRSLMNK---GP------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNK 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~---~~------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
.-..+.|.++..+++.+.+.. .. ....+.++++|++|+|||+||+.++......| +......
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~----- 251 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSE----- 251 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHH-----
Confidence 345578877766666555422 11 12245789999999999999999998653221 1111111
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCC-
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREW- 156 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~- 156 (218)
+.. .. .+ .....+...+.......+.+|+|||++... .+..++..+..
T Consensus 252 --f~~---~~----~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 252 --FVE---MF----VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred --HHH---Hh----hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 100 00 00 011123344555556778999999996431 12233322211
Q ss_pred -CCCCceEEEEeCChhhHhh-c----CCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 157 -FGSGSRIIVTSRDEHLLKT-Y----GMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 157 -~~~~~~ilittr~~~~~~~-~----~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
...+..+|.+|...+.... + +-+..+.+.+.+.++..++++.++..
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 1233445555555432221 1 22467889999999999999988754
No 105
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.71 E-value=6.7e-07 Score=68.14 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=95.8
Q ss_pred cCCccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCch
Q 047309 16 KIPLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 16 ~l~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
+.|........+.-+...-++..-.+........+++.|+|+-|+|||.+.+.+.....+.-..++++.+ .. -+
T Consensus 18 ~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~-~~-----~s 91 (269)
T COG3267 18 RLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK-PT-----LS 91 (269)
T ss_pred cCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC-cc-----hh
Confidence 3344443444444433333333333322222445699999999999999999555544333222223321 11 11
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHh----h-CCCe-EEEEEeCCCC--hhHhhHHhc--CC-CCCCCCceEE
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSR----L-QHKK-VLLVIDDVVD--IKQLEYLAG--KR-EWFGSGSRII 164 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l-~~~~-~livlD~~~~--~~~~~~l~~--~~-~~~~~~~~il 164 (218)
...+...+...+... +......+...+.+. . ++++ .++++|+++. .+.++.+.. .+ .+...-.+|+
T Consensus 92 ~~~~~~ai~~~l~~~---p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~iv 168 (269)
T COG3267 92 DATLLEAIVADLESQ---PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIV 168 (269)
T ss_pred HHHHHHHHHHHhccC---ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeee
Confidence 566777777776552 222222222222222 2 4666 8999999964 333333322 22 2222223555
Q ss_pred EEeCCh--------hhHhhcCCCce-eeCCCCChhHHHHHHHHhhcCCCC
Q 047309 165 VTSRDE--------HLLKTYGMDEI-YKPNELNYHDALQLFNMKAFKIQK 205 (218)
Q Consensus 165 ittr~~--------~~~~~~~~~~~-~~l~~L~~~e~~~l~~~~~~~~~~ 205 (218)
.....+ ........... |+++|++.++...|++.++.+...
T Consensus 169 L~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~ 218 (269)
T COG3267 169 LIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGL 218 (269)
T ss_pred ecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCC
Confidence 554432 11111223445 999999999999999998876543
No 106
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.69 E-value=2e-07 Score=79.55 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=90.0
Q ss_pred cccccccccchhHHHHHHhhh---cC------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMN---KG------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~---~~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..-..++|-+...+++.+++. .. ....++-++++||+|+|||+||+.++......| +......
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~~---- 123 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGSD---- 123 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHHH----
Confidence 344458887776666655443 11 113345688999999999999999998653221 1111111
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~ 156 (218)
+. .... + .....+...+.......+.+|+||+++... .+..++..+..
T Consensus 124 ---~~---~~~~----g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 124 ---FV---EMFV----G------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred ---HH---HHHh----c------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 10 0000 0 011122334444445667899999996421 11223222211
Q ss_pred C--CCCceEEEEeCChhh-Hhh----cCCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 157 F--GSGSRIIVTSRDEHL-LKT----YGMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 157 ~--~~~~~ilittr~~~~-~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
. ..+..||.||...+. ... ..-+..++++..+.++..++++.++..... ....+..++.
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 1 122334445544332 111 123567899999999999999988754432 2333444443
No 107
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.69 E-value=5.9e-07 Score=80.21 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=85.9
Q ss_pred ccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..+.+.|.+..++.+.+++... .-..++.++++|++|+|||+||+.+++.....| +.+ +.......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc
Confidence 4445889999999998887431 113346788999999999999999998764332 122 22211110
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCC-C
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF-G 158 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~-~ 158 (218)
. .. .....+...+.......+.+|+||+++... ....++..+... .
T Consensus 252 ~--~g------------------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 252 Y--YG------------------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred c--cc------------------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 0 00 001112223333334567799999986421 122333322211 2
Q ss_pred CCceEEE-EeCChh-hHhhc----CCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 159 SGSRIIV-TSRDEH-LLKTY----GMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 159 ~~~~ili-ttr~~~-~~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+..+++ +|...+ +...+ .-...+.+...+.++..++++.+..+
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 2333444 444332 11111 12456788888999999999876543
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=8e-07 Score=76.56 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=94.2
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+...+.|..++... .-...++++|++|+|||++|+.+++.+.- ...... .+. ....+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~---pC~--------~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM---PCG--------ECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC---CCc--------cchHH
Confidence 35567999999999999999763 23456889999999999999999996531 110000 000 00001
Q ss_pred HHHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCC-
Q 047309 101 RQLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRD- 169 (218)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~- 169 (218)
..+... +...........+++....... ..++.-++|||+++... .+..++..+..-.....+|++|.+
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 111000 0000000011112222221111 12455589999998643 466676665543445566665544
Q ss_pred hhhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 EHLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+... .+....+++.+++.++..+.+.+.+.
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence 333222 24466799999999999999887653
No 109
>PRK08181 transposase; Validated
Probab=98.68 E-value=1.6e-07 Score=73.59 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=27.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..++++|++|+|||+||..+++...+....+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999998776554455555
No 110
>PRK12377 putative replication protein; Provisional
Probab=98.68 E-value=3.3e-07 Score=70.96 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.....+...-. .....++++|++|+|||+||..+++.+......+.|+
T Consensus 87 ~~~a~~~a~~~~-~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 87 LSQAKSIADELM-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred HHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 344444443322 2235788999999999999999999876655555555
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=6.4e-07 Score=77.97 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=92.3
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQ 102 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
.-..++|.+...+.|.+++... .-...++++|+.|+|||++|+.+++.+.-.......- .++ ....+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~-~Cg--------~C~sC~~ 83 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGE-ACN--------ECESCVA 83 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC-CCC--------cchHHHH
Confidence 4557899999999999999763 2235688999999999999999998652100000000 000 0000000
Q ss_pred HHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEe-CChh
Q 047309 103 LLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTS-RDEH 171 (218)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilitt-r~~~ 171 (218)
+-.. +...........+++...+... ..+..=++|||+++.. .....|+..+..-...+.+|++| ....
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 0000 0000000011111222222111 1134448999999864 34566665555434455566554 4344
Q ss_pred hHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 172 LLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 ~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+... .+.+..+++.+++.++....+.+.+.
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHHHHHH
Confidence 4333 34577899999999999999987653
No 112
>PRK08116 hypothetical protein; Validated
Probab=98.67 E-value=1.7e-07 Score=73.67 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...++++|++|+|||+||..+++.+.+....++|+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35689999999999999999999876554444555
No 113
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.3e-07 Score=78.11 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=94.0
Q ss_pred ccccccccchhHHHHHHhhhc---CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNK---GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~---~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
...+.+|-++.-++|.++|.- .+.-+.++++++||||+|||+|++.+++.+...|-.... ..++.-.. ..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL-GGvrDEAE----IR-- 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL-GGVRDEAE----IR-- 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec-CccccHHH----hc--
Confidence 345689999999999888844 222556899999999999999999999987666532222 12222111 00
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh------HhhHHh------------cCCCCCCCC-
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK------QLEYLA------------GKREWFGSG- 160 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~------~~~~l~------------~~~~~~~~~- 160 (218)
++....-..-++.++..+... .-++.|++||++|.+. ...+++ ..+.+..-.
T Consensus 394 --------GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 394 --------GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred --------cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 000000011122333333332 2346799999996421 112222 111111111
Q ss_pred ceEE-EEeC-Chh--hHhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 161 SRII-VTSR-DEH--LLKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 161 ~~il-ittr-~~~--~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+.|+ ++|- +-+ ....+.+...++|.+.+++|-.+.-++++-+
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcch
Confidence 2333 3333 332 1333556789999999999999999888743
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=6.2e-07 Score=77.68 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=91.0
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+...+.|.+++... .-...++++|++|+|||++|+.+++.+. .+....- .++ ....+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~---~c~--------~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE---PCN--------VCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC---CCC--------ccHHH
Confidence 45567999999999999998763 2234678999999999999999998652 1110000 000 00001
Q ss_pred HHHHHH----HhhccCCCcccccccHHHHHHhh-----CCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCC
Q 047309 101 RQLLVE----ILKLEKDSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
..+... +...........+++.. +...+ .++.-++|||+++... ....++..+..-.....+|++|.+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 110000 00000000011111111 11111 2344589999998753 355666555433445566665544
Q ss_pred -hhhHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 170 -EHLLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 170 -~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
..+... .+.+..+++.+++.++....+...+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHH
Confidence 333322 3446778999999999988887754
No 115
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.65 E-value=1.7e-07 Score=79.01 Aligned_cols=167 Identities=15% Similarity=0.187 Sum_probs=101.5
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEEEechhhhccCchHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
.-..++|.+...+.|...+... .-......+|+.|+||||+|+.+++.+ +...... .++.-...++
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~-----------ePC~~C~~Ck 80 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTA-----------EPCGKCISCK 80 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC-----------CcchhhhhhH
Confidence 3445799999999999999762 112356789999999999999999854 2110000 0000111221
Q ss_pred HHHH----HHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 102 QLLV----EILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 102 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
.+-. ++...+..+...++++...+.+.. .++-=++|||+++.. ..|..++.-+..-.....+|+.|.+..
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 1111 111111122223333333333332 234449999999874 568888887765555666677666543
Q ss_pred -h-HhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 172 -L-LKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 172 -~-~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+ ..-.++++.|.+..++.++....+..-+..
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHh
Confidence 3 222456788999999999999999887653
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.9e-07 Score=71.10 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=93.0
Q ss_pred ccccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
|..-..|+|.++..+++.=++...+ .+..-.++++||+|.||||||..+++++...+. + ..+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~-tsGp~--------- 87 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----I-TSGPA--------- 87 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----e-ccccc---------
Confidence 4566779999999999877775522 255678999999999999999999997743311 1 11111
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH-hhHHhcC--------C-CCCCCCceE-----
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ-LEYLAGK--------R-EWFGSGSRI----- 163 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~-~~~l~~~--------~-~~~~~~~~i----- 163 (218)
...+.+++..+.+. ...-++++|+++.... .+.++.+ + .-..++++.
T Consensus 88 ----------------leK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 88 ----------------LEKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----------------ccChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 11222333333332 2233889999986422 2222211 1 111222222
Q ss_pred ----E--EEeCChhhHhhc--CCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhhc
Q 047309 164 ----I--VTSRDEHLLKTY--GMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLSE 215 (218)
Q Consensus 164 ----l--ittr~~~~~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~~ 215 (218)
+ -|||.--+.+-+ +-.-+..++-.+.+|..+.+.+.+.-. .-..+.-.+||+
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~ 211 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIAR 211 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 2 267764322111 113457888889999999998876432 233444444443
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.65 E-value=6.5e-07 Score=78.08 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=40.2
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|.....++|++..++.+.+.+.. .....++|+|++|+||||||+.+.+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34555699999999998887754 334579999999999999999988754
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=3.1e-07 Score=79.97 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=92.6
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
..-..++|.+...+.|.+++... .-...++++|++|+|||++|+.+++.+.-.. .....-.| + ..+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~--rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C-g--------~C~~C 81 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN--RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC-G--------KCELC 81 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC-c--------ccHHH
Confidence 34456899999999999999763 1235788999999999999999999753211 00000000 0 11112
Q ss_pred HHHHHHHh----hccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 101 RQLLVEIL----KLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 101 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
+.+..... ..........+.+...+.... .+..-++|||+++.+ .....++..+..-.....+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 22211100 000001111111222221111 234458999999865 34566665554333445555555443
Q ss_pred -hhHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 -HLLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 -~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+... .+....+++.+++.++....+.+.+.
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 23222 23467788999999998888877554
No 119
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.6e-07 Score=77.82 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=93.9
Q ss_pred cccccccccchhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
..-+.+-|-++.-.+|...+.-+. -..++-|+++||||+|||++|+.+++...-.|-.+ ...+-
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL-- 504 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPEL-- 504 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHH--
Confidence 344456667766666665553311 15567899999999999999999998654443211 11111
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCCC
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWFG 158 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~~ 158 (218)
+..+.. .+...+.+.|+..-+-.+.+|+||+++... -+..++..+.-..
T Consensus 505 --------~sk~vG----------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 505 --------FSKYVG----------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred --------HHHhcC----------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 111110 111122333444444667899999996421 1334444433222
Q ss_pred CCceEEE---EeCChhhHhh-cC---CCceeeCCCCChhHHHHHHHHhhcCCCCC-CchhHhhhc
Q 047309 159 SGSRIIV---TSRDEHLLKT-YG---MDEIYKPNELNYHDALQLFNMKAFKIQKP-LEECVQLSE 215 (218)
Q Consensus 159 ~~~~ili---ttr~~~~~~~-~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~-~~~~~~i~~ 215 (218)
....|+| |.|...+-.. ++ -+..+.+++=+.+...++|++++.+-... +-.+++||.
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 3333433 3443333222 23 36678888888888899999998665432 234555553
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.60 E-value=6.2e-07 Score=69.99 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=96.3
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc--cccceEEEEechhhhccCchH-HH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH--EFEGSSFLADVREKFKNKGSV-IS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~ 98 (218)
.....++|.+.....|...+.. ...+..+.+||+|+|||+-|+.++.++.. -|...+.-.|.... ....+ ..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde--rGisvvr~ 107 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE--RGISVVRE 107 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc--ccccchhh
Confidence 4455689999999999888876 34578899999999999999999986532 22222221111110 00000 00
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCe-EEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-h-H
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKK-VLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-L-L 173 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~-~ 173 (218)
-.+.. ..+........ .. .-.+ -+||||+++.+ +.|..+...+.......++++.+..-. + .
T Consensus 108 Kik~f-akl~~~~~~~~-----------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 108 KIKNF-AKLTVLLKRSD-----------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhcCH-HHHhhcccccc-----------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 00000 00000000000 00 0112 38999999975 457777766655456666666544421 1 1
Q ss_pred hhcCCCceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHhhh
Q 047309 174 KTYGMDEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQLS 214 (218)
Q Consensus 174 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~i~ 214 (218)
.-.+..+.+...+|.++....-++.-+... .-+++.++.|+
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 112335668889999988888777765322 22344444443
No 121
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.59 E-value=1.4e-06 Score=68.32 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++.|++|+|||+||+.+++..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999855
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.59 E-value=1.9e-06 Score=76.97 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=38.9
Q ss_pred cccccccchhHHHHHHhhhcC-----CCC-CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----PND-DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----~~~-~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....+|.+..++.+...+... .+. ....++++||+|+|||.||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 445889999999988887641 111 234578999999999999999998763
No 123
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.59 E-value=9e-07 Score=79.40 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=39.4
Q ss_pred cccccchhHHHHHHhhhc---CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 26 KLVGIDSRLEELRSLMNK---GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~---~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+|.+...+.+.+++.. ....+.+.++++|++|+|||++|+.++..+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478888888888876642 111345689999999999999999999977544
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.58 E-value=1.9e-06 Score=78.00 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=40.9
Q ss_pred cccccccchhHHHHHHhhhcC-----CC-CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----PN-DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----~~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...++|.+..++.+.+.+... .+ .....++++|++|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 346899999999998888642 11 123568899999999999999999876443
No 125
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.58 E-value=4.5e-07 Score=72.47 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=66.7
Q ss_pred ccchhHHHHHHhhhcCCC-CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHH
Q 047309 29 GIDSRLEELRSLMNKGPN-DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEI 107 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 107 (218)
+|........+++..... ...+.++|+|++|+|||+||.++++.+......+.|+. +..++..+-...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 444445555666654221 24567999999999999999999998866555555552 333333333222
Q ss_pred hhccCCCcccccccHHHHHHhhCCCeEEEEEeCCC--ChhHhhH--HhcCCC--CCCCCceEEEEeCCh
Q 047309 108 LKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVV--DIKQLEY--LAGKRE--WFGSGSRIIVTSRDE 170 (218)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~--~~~~~~~--l~~~~~--~~~~~~~ilittr~~ 170 (218)
.. .+ ....+..+ .+.-||||||+. ..+.|.. ++..+. +.......++||...
T Consensus 204 ~~------~~---~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 204 SD------GS---VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred hc------Cc---HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 11 01 12222222 244599999995 3445532 322221 112445677777653
No 126
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9.3e-07 Score=73.83 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=80.5
Q ss_pred chhHHHHHHhhhcCCC------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHH
Q 047309 31 DSRLEELRSLMNKGPN------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLL 104 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (218)
..|++++.++|.++.. .=++-|+++||+|+|||-||++++.+.. +-|+.+.++.|+ + ++
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSEFd------E----m~ 377 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSEFD------E----MF 377 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccchh------h----hh
Confidence 3467777778766332 3356799999999999999999998543 222323333322 1 11
Q ss_pred HHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-------------hHhhHHhcCCCCCCCCceEEE--EeCC
Q 047309 105 VEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-------------KQLEYLAGKREWFGSGSRIIV--TSRD 169 (218)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-------------~~~~~l~~~~~~~~~~~~ili--ttr~ 169 (218)
. + ....++.+.|...-...+++|+||+++.. ..+..++..+.-+.++.-||+ .|..
T Consensus 378 V---G------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 378 V---G------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred h---c------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 0 0 11112344444444577999999999631 113455554443444443443 2333
Q ss_pred hh-hHhhc---CC-CceeeCCCCChhHHHHHHHHhhcCC
Q 047309 170 EH-LLKTY---GM-DEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 170 ~~-~~~~~---~~-~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
++ +...+ +. +..+.++.=+-.-..++|..+..+.
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 33 32222 22 2335555555556666666665433
No 127
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.58 E-value=1.1e-06 Score=72.88 Aligned_cols=117 Identities=16% Similarity=0.230 Sum_probs=76.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ 130 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 130 (218)
+++|.||.++||||+++.+.+...+. .+++........... +.+....+... -.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~-l~d~~~~~~~~----------------------~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIE-LLDLLRAYIEL----------------------KE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhh-HHHHHHHHHHh----------------------hc
Confidence 99999999999999997777765444 444433222222111 22222222111 01
Q ss_pred CCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhh-----c-CCCceeeCCCCChhHHHH
Q 047309 131 HKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKT-----Y-GMDEIYKPNELNYHDALQ 194 (218)
Q Consensus 131 ~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~-----~-~~~~~~~l~~L~~~e~~~ 194 (218)
.++.+|+||+++....|...+..+.+..+. ++++|+-+..+... + +....+++.|||-.|...
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 256799999999999999888777765555 78888776543222 2 346789999999999965
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.58 E-value=2.6e-06 Score=77.03 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=39.4
Q ss_pred cccccccchhHHHHHHhhhcC-----CCCC-ceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----PNDD-VRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----~~~~-~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
...++|.+..++.+...+... .+.+ ...++++|++|+|||+||+.+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345889999999998888541 1111 246889999999999999999986643
No 129
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.58 E-value=5e-06 Score=70.48 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=81.6
Q ss_pred ccccccccchhHHHHHHhhhc-------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccC-c
Q 047309 23 TLKKLVGIDSRLEELRSLMNK-------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNK-G 94 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~-------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (218)
...+..|.+...+.+.+.... .+-..++.++++|++|+|||.+|+.+++.+.-.| +.......+... +
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 334577766555555432111 1113457799999999999999999999764332 111221111100 0
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--------------HhhHHhcCCCCCCCC
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--------------QLEYLAGKREWFGSG 160 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--------------~~~~l~~~~~~~~~~ 160 (218)
.... .+...+...-...+.+|+||+++..- .+..++..+.....+
T Consensus 302 ese~---------------------~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 302 ESES---------------------RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred hHHH---------------------HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 0011 11222222223568899999996321 011222222222223
Q ss_pred ceEEEEeCChhh-Hhh----cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 161 SRIIVTSRDEHL-LKT----YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 161 ~~ilittr~~~~-~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
..||.||...+. ... .+-+..+.++.-+.++..++|+.+...
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 334446654432 111 123567888888999999999988754
No 130
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.57 E-value=2.1e-06 Score=68.01 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=110.9
Q ss_pred HHHHHHHHccCCccccccccccccchhHHHHHHhhhc-CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEe
Q 047309 7 WDIVKAISSKIPLKSETLKKLVGIDSRLEELRSLMNK-GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLAD 85 (218)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~gR~~e~~~l~~~l~~-~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~ 85 (218)
.++.+.+..++.. +...|+|-.++-+++..++.. ...++...|.+.||.|.|||.|......+. +.+..-++++.
T Consensus 9 ~siqr~l~~rl~~---~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~ 84 (408)
T KOG2228|consen 9 SSIQRILRERLCG---PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVR 84 (408)
T ss_pred HHHHHHHHHHhcC---CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEE
Confidence 3344444555533 445699999999999998855 222556778899999999999987777762 33332333333
Q ss_pred chhhhc-cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC------CCeEEEEEeCCCChh------HhhHHhc
Q 047309 86 VREKFK-NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ------HKKVLLVIDDVVDIK------QLEYLAG 152 (218)
Q Consensus 86 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~livlD~~~~~~------~~~~l~~ 152 (218)
+..... +...+..+..++..++... .....+..+....+-..+. +.++++|+|++|-.. .+..++.
T Consensus 85 Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD 163 (408)
T KOG2228|consen 85 LNGELQTDKIALKGITRQLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD 163 (408)
T ss_pred ECccchhhHHHHHHHHHHHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHH
Confidence 322211 1112556666665554433 2233344444555555553 236788898886421 1222221
Q ss_pred C-CCCCCCCceEEEEeCCh-------hhHhhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 153 K-REWFGSGSRIIVTSRDE-------HLLKTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 153 ~-~~~~~~~~~ilittr~~-------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
. -....|-|-|-+|||-. .+-++++...++-+++++.++...+++...
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 1 11113345566788864 333444445677888999999999999876
No 131
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.56 E-value=1.1e-06 Score=75.32 Aligned_cols=185 Identities=10% Similarity=0.064 Sum_probs=109.2
Q ss_pred ccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhc-----ccccceEEE-EechhhhccCc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLIS-----HEFEGSSFL-ADVREKFKNKG 94 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~-----~~~~~~~~~-~~~~~~~~~~~ 94 (218)
.+..+.+|+.|..+|.+++...- +...+.++|.|-+|+|||..++.|++.++ +..+...|+ .+...-..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~--- 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS--- 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC---
Confidence 66778999999999999886622 24556999999999999999999999553 122222221 12222111
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC-----CCeEEEEEeCCCCh-----hHhhHHhcCCCCCCCCceEE
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ-----HKKVLLVIDDVVDI-----KQLEYLAGKREWFGSGSRII 164 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~livlD~~~~~-----~~~~~l~~~~~~~~~~~~il 164 (218)
...+...|...+.+.... .......+..++. ..+.+++||+++.. +-+..++..-. .++++++
T Consensus 471 -~~~~Y~~I~~~lsg~~~~----~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLv 543 (767)
T KOG1514|consen 471 -PREIYEKIWEALSGERVT----WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLV 543 (767)
T ss_pred -HHHHHHHHHHhcccCccc----HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceE
Confidence 566667777665443322 2233444444442 34689999998642 22344443322 3556555
Q ss_pred EEe--CChhhHhhc-------C-CCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhccc
Q 047309 165 VTS--RDEHLLKTY-------G-MDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSEGV 217 (218)
Q Consensus 165 itt--r~~~~~~~~-------~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~~i 217 (218)
|.+ -..++..++ + ...-+..+|.+.++..+.+..++.+... .....+-+|++|
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV 607 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKV 607 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH
Confidence 532 222222221 0 1344788999999999999998877632 223344444443
No 132
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=3.8e-07 Score=63.81 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=26.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..+.|+|++|+|||++++.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5788999999999999999999765554233333
No 133
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.56 E-value=8.7e-08 Score=74.22 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcc-----cccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIW-----NVGD 120 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~ 120 (218)
..+..+.|.|++|+|||||++++++.... +|+..+|++...+... . ..++++.+...+.-....... ....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~--e-v~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE--E-VTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc--c-HHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 34567889999999999999999997644 5777778754555211 1 666766662221111100000 0011
Q ss_pred cHHHHHHh-hCCCeEEEEEeCCCC
Q 047309 121 GINILGSR-LQHKKVLLVIDDVVD 143 (218)
Q Consensus 121 ~~~~l~~~-l~~~~~livlD~~~~ 143 (218)
........ -.+++.++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 12222222 247899999999964
No 134
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.54 E-value=3e-06 Score=75.74 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=89.2
Q ss_pred ccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCc
Q 047309 25 KKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKG 94 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
..+.|.+...+.|.+.+.- ..-..++-++++|++|+|||+||+.+++.....| +.....+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~l~~--- 525 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPEILS--- 525 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHHHhh---
Confidence 3466777777777666532 1113345688999999999999999999764332 1111111110
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--------------HhhHHhcCCCCC--C
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--------------QLEYLAGKREWF--G 158 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--------------~~~~l~~~~~~~--~ 158 (218)
.+. ..+...+...+...-...+.+|+||+++... ....++..+... .
T Consensus 526 -------~~v----------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 526 -------KWV----------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -------ccc----------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 000 0001112223333334667899999986421 122333333211 2
Q ss_pred CCceEEEEeCChhhHh-h-c---CCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 159 SGSRIIVTSRDEHLLK-T-Y---GMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 159 ~~~~ilittr~~~~~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.+..||.||...+... . + +-+..+.+++.+.++..++|+.+..+... ....+..+|.
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 2333444554443221 1 1 22567899999999999999877654432 2334555553
No 135
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=3.8e-07 Score=73.51 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=32.9
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...++..-. .....++++|++|+|||+||..+++.+......+.|+
T Consensus 172 ~~~f~~~f~-~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 172 CKNFIENFD-KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR 217 (329)
T ss_pred HHHHHHHHh-ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344554322 2236799999999999999999999876655556666
No 136
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.53 E-value=3.1e-06 Score=69.42 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=92.1
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHh
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEIL 108 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (218)
|.+.+++|..||.. ....+|+|+||.|+||+.|+ ..+.+.. ..+.++.|-...-... -...+..+..+++
T Consensus 1 R~e~~~~L~~wL~e---~~~TFIvV~GPrGSGK~elV~d~~L~~r----~~vL~IDC~~i~~ar~--D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE---NPNTFIVVQGPRGSGKRELVMDHVLKDR----KNVLVIDCDQIVKARG--DAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhc---CCCeEEEEECCCCCCccHHHHHHHHhCC----CCEEEEEChHhhhccC--hHHHHHHHHHhcC
Confidence 67789999999987 34579999999999999998 6666532 2355554333221111 1222222222111
Q ss_pred ------------------hc---cCC-C-cccccccHH--------HHHH-------------------hhC---CCeEE
Q 047309 109 ------------------KL---EKD-S-IWNVGDGIN--------ILGS-------------------RLQ---HKKVL 135 (218)
Q Consensus 109 ------------------~~---~~~-~-~~~~~~~~~--------~l~~-------------------~l~---~~~~l 135 (218)
.+ +.. . ..+.+..+. .++. +++ ..+.+
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 00 100 0 111111111 1111 111 12579
Q ss_pred EEEeCCCC-----------hhHhhHHhcCCCCCCCCceEEEEeCChhhHh----hc--CCCceeeCCCCChhHHHHHHHH
Q 047309 136 LVIDDVVD-----------IKQLEYLAGKREWFGSGSRIIVTSRDEHLLK----TY--GMDEIYKPNELNYHDALQLFNM 198 (218)
Q Consensus 136 ivlD~~~~-----------~~~~~~l~~~~~~~~~~~~ilittr~~~~~~----~~--~~~~~~~l~~L~~~e~~~l~~~ 198 (218)
|||||+.. ..+|...+.. ++-.+||++|.+..... .+ ..++++.|.-.+.+.+..|+..
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 99999842 2335444433 44568888887754333 23 2367899999999999999999
Q ss_pred hhcCC
Q 047309 199 KAFKI 203 (218)
Q Consensus 199 ~~~~~ 203 (218)
++...
T Consensus 228 ~L~~~ 232 (431)
T PF10443_consen 228 QLDED 232 (431)
T ss_pred Hhccc
Confidence 98543
No 137
>PRK06526 transposase; Provisional
Probab=98.53 E-value=2.5e-07 Score=72.02 Aligned_cols=34 Identities=24% Similarity=0.084 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSF 82 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~ 82 (218)
...++++|++|+|||+||..++.........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3568899999999999999999876544333333
No 138
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=3.9e-07 Score=71.49 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLA 84 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~ 84 (218)
....++++|++|+|||+|+..+++.+.+. ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999987655 44555653
No 139
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.51 E-value=6.1e-06 Score=66.70 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..++.++|||++|+|||.+|+.+++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 567899999999999999999999987543
No 140
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.51 E-value=9.4e-06 Score=65.59 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=50.8
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc---ccceEEEEechhhhccCchHHHHHHHHHHH
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE---FEGSSFLADVREKFKNKGSVISFQRQLLVE 106 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (218)
|+...+.|.+.+.......+.+++|.|+=|+|||++++.+.+.+.+. ...++++ +..........+..++..+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~f-n~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYF-NAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEE-ccccCCCcchHHHHHHHHHHHH
Confidence 45567788888887654677899999999999999999999987666 1222222 3333222222355566665555
Q ss_pred H
Q 047309 107 I 107 (218)
Q Consensus 107 ~ 107 (218)
+
T Consensus 80 l 80 (325)
T PF07693_consen 80 L 80 (325)
T ss_pred H
Confidence 4
No 141
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=1.3e-07 Score=69.68 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...-++++|++|+|||+||..+++.+......+.|+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 346799999999999999999999776555556666
No 142
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-06 Score=75.32 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred ccccccccchhHHHHHHhhhc---CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNK---GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~---~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
..+..+|-++.-+++.+++.- .++-++++++++||+|+|||++++.++..+...|... .+..+.. ..++
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf-SvGG~tD-------vAeI 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF-SVGGMTD-------VAEI 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE-ecccccc-------HHhh
Confidence 345688999999998888844 3347789999999999999999999999876554211 1111111 1110
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh------hHhh------------HHhcCCCCCCCC-
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI------KQLE------------YLAGKREWFGSG- 160 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~------~~~~------------~l~~~~~~~~~~- 160 (218)
- ++....-..-++.++.-++.. .-.+.|++||+++.. +.-. .|...+.+..-.
T Consensus 481 k-------GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 481 K-------GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred c-------ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 0 000000011122333333332 234568889998631 1111 222222222212
Q ss_pred ceEEE--EeCChhh--HhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 161 SRIIV--TSRDEHL--LKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 161 ~~ili--ttr~~~~--~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
++|++ |....+. .........+++.+...+|-..+-++++-
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 45655 3222111 12234467899999999998888887764
No 143
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.50 E-value=1.4e-06 Score=67.30 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=34.6
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+..+.++..... .....++++|++|+|||+|+..++..+......+.++
T Consensus 84 al~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 84 ALSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3445555554422 2235788999999999999999999876654455555
No 144
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=3e-06 Score=73.69 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=42.7
Q ss_pred ccccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|.....++|.+..++.+..++.... ....++++|+|++|+||||+++.++..+
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455669999999999999997632 1334679999999999999999999854
No 145
>PRK10536 hypothetical protein; Provisional
Probab=98.49 E-value=6.2e-07 Score=69.12 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=36.0
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..+.+|+.....+..++... ..+++.|++|+|||+||..++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~-----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK-----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence 44677898888888888652 49999999999999999998874
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.6e-06 Score=76.20 Aligned_cols=121 Identities=16% Similarity=0.253 Sum_probs=71.3
Q ss_pred ccccccccchhHHHHHHhhhc----C--CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 23 TLKKLVGIDSRLEELRSLMNK----G--PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~----~--~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
.....+|.+..+..+.+.+.. . .+...+.++..||+|||||.||+.++..+...-...+-+ ++++
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSE-------- 559 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSE-------- 559 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHH--------
Confidence 344589999999999888743 1 113345778899999999999999999764332323323 3333
Q ss_pred HHHHHH-HHHHHhhccCCCcccccccHHHHHHhhCCCeE-EEEEeCCCC--hhHhhHHhcCCCC
Q 047309 97 ISFQRQ-LLVEILKLEKDSIWNVGDGINILGSRLQHKKV-LLVIDDVVD--IKQLEYLAGKREW 156 (218)
Q Consensus 97 ~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-livlD~~~~--~~~~~~l~~~~~~ 156 (218)
..+. ....+.+.++. .-..++ ...+-+..+.+|| +|+||+++. ++-+.-|++.+.+
T Consensus 560 --y~EkHsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 560 --YMEKHSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHHHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2222 22333333221 111222 3334444456776 888999975 4445555555443
No 147
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.9e-06 Score=70.87 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
.....+++.|++|+|||+||..++. ...|+++-.+. ...-. + +.+..+ +.++...+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-pe~mi---G-~sEsaK----------------c~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-PEDMI---G-LSESAK----------------CAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-hHHcc---C-ccHHHH----------------HHHHHHHHH
Confidence 4456789999999999999999997 45777766552 11110 0 111111 111122222
Q ss_pred HhhCCCeEEEEEeCCCChhHhh------------HHhcCCCCCC-CCceEEE--EeCChhhHhhcCC----CceeeCCCC
Q 047309 127 SRLQHKKVLLVIDDVVDIKQLE------------YLAGKREWFG-SGSRIIV--TSRDEHLLKTYGM----DEIYKPNEL 187 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~~~~------------~l~~~~~~~~-~~~~ili--ttr~~~~~~~~~~----~~~~~l~~L 187 (218)
..-+..-.+||+||++..-+|- .+...+.... +|-+++| ||....++..|+. ...++++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 2223445689999997654432 3333333222 3334444 6666777777654 356888888
Q ss_pred Ch-hHHHHHHHHh
Q 047309 188 NY-HDALQLFNMK 199 (218)
Q Consensus 188 ~~-~e~~~l~~~~ 199 (218)
+. ++..+.+...
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 87 6777777665
No 148
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=5.9e-06 Score=66.92 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred cccc-cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechhhhccCchHHHHHHHH
Q 047309 26 KLVG-IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVREKFKNKGSVISFQRQL 103 (218)
Q Consensus 26 ~~~g-R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
..+| .+...+.|...+... .-....+++|+.|+|||++|+.+++.+- .......-+ + -...+..+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c---g--------~C~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC---G--------TCTNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC---C--------cCHHHHHH
Confidence 3556 677778888888652 2235678999999999999999998652 110000000 0 00001111
Q ss_pred HHH----HhhccC-CCcccccccHHHHHHh----hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-
Q 047309 104 LVE----ILKLEK-DSIWNVGDGINILGSR----LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH- 171 (218)
Q Consensus 104 ~~~----~~~~~~-~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~- 171 (218)
... +....+ ......+.+.+.+... ..+.+=++|||+++.. .....++..+..-..++.+|++|.+..
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 000 000000 0001111222222111 1244558999999864 345666666655456677777776543
Q ss_pred hHhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 172 LLKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 172 ~~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
+... .+....+++.+++.++..+.+.+.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3222 345778999999999998888764
No 149
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.47 E-value=1.7e-06 Score=74.27 Aligned_cols=48 Identities=23% Similarity=0.455 Sum_probs=39.3
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-..++|.+..++.+...+.. .....++|+|++|+|||++|+.+.+.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~---~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG---PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445699999999999987755 34467889999999999999988764
No 150
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=9.6e-07 Score=69.07 Aligned_cols=36 Identities=25% Similarity=0.139 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+...++|+|++|+|||+|+..++.........+.|+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345788999999999999999988654444344444
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.1e-07 Score=77.99 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=90.2
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-----cc-ceEEEEechhhhccCchH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-----FE-GSSFLADVREKFKNKGSV 96 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~ 96 (218)
...+.+||++|+.++.+.|.... +..+| +.|++|+|||+++.-++.+.-+. .. ..++..+++.-...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~--KNNPv-LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG---- 240 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT--KNNPV-LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG---- 240 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC--CCCCe-EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc----
Confidence 34458999999999999997742 23344 78999999999999999865322 11 12222222221110
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHH-HHhhCCCeEEEEEeCCCCh----------hHhhHHhcCCCCCCCC-ceEE
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINIL-GSRLQHKKVLLVIDDVVDI----------KQLEYLAGKREWFGSG-SRII 164 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~livlD~~~~~----------~~~~~l~~~~~~~~~~-~~il 164 (218)
..--.++++..+.+ .+.-+..+.+|+||+++.. .+...++.+.. ..| .++|
T Consensus 241 ---------------akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~I 303 (786)
T COG0542 241 ---------------AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCI 303 (786)
T ss_pred ---------------ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEE
Confidence 01112222222222 2222344889999998521 12223332211 333 4666
Q ss_pred EEeCChhhHh-------hcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 165 VTSRDEHLLK-------TYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 165 ittr~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
-.|...+... ..+.++.+.+..-|.+++...++.....
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHH
Confidence 5444433221 2356899999999999999999976543
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.1e-05 Score=64.80 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=93.2
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-cc--------------ccceEEEEechhh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HE--------------FEGSSFLADVREK 89 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~--------------~~~~~~~~~~~~~ 89 (218)
..++|.+...+.+.+.+... .-....+++|+.|+||+++|..+++.+- .. ++...|+.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~- 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ- 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc-
Confidence 35789999999999999763 2246899999999999999999998642 21 111122211000
Q ss_pred hccCchHHHHHHHHHHHHhhccC-CCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCc
Q 047309 90 FKNKGSVISFQRQLLVEILKLEK-DSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGS 161 (218)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~ 161 (218)
..... .. ............ ...-..+ .+..+.+.+ .+..=++|||+++.+ .....++..+..-. ..
T Consensus 81 ~~g~~-~~---~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 81 HQGKL-IT---ASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred ccccc-cc---hhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 00000 00 000000000000 0001111 122233333 245669999999864 34556665554334 44
Q ss_pred eEEEEeCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 162 RIIVTSRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 162 ~ilittr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.+|++|.+. .+... .+....+.+.+++.++..+.+.+..
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 566555544 33332 3457889999999999999999874
No 153
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.45 E-value=3.2e-06 Score=75.62 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=87.4
Q ss_pred ccccccchhHHHHHHhhhcC---CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 25 KKLVGIDSRLEELRSLMNKG---PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~---~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
..++|.++..++|.+++... .......++++|++|+|||++++.++..+...|..+. +...+. ...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~d-------~~~--- 390 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVRD-------EAE--- 390 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCCC-------HHH---
Confidence 45899999999998888631 1134568999999999999999999987654432211 111111 111
Q ss_pred HHHHHHhhcc-CCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH------hhHHhcCCCC---------------CCC
Q 047309 102 QLLVEILKLE-KDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ------LEYLAGKREW---------------FGS 159 (218)
Q Consensus 102 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~------~~~l~~~~~~---------------~~~ 159 (218)
+.+.. .........+...+...-. ...+|+||+++.... ...++..+.. ...
T Consensus 391 -----i~g~~~~~~g~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 391 -----IRGHRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred -----hccchhccCCCCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 00000 0000112223333333222 234789999964321 2333322211 012
Q ss_pred CceEEEEeCChhhH-hhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 160 GSRIIVTSRDEHLL-KTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 160 ~~~ilittr~~~~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
...+|.|+....+. ..++....+++.+++.++..++.++++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 23334455433221 1134467899999999999999888763
No 154
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.8e-06 Score=68.05 Aligned_cols=135 Identities=14% Similarity=0.216 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh----cccccceEEE-EechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI----SHEFEGSSFL-ADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGIN 123 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 123 (218)
.|.++++||||+|||+|.+.+++.+ ..+|.....+ .+...-|+ .++.. +..-+..+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS----------KWFsE-------SgKlV~kmF~ 239 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS----------KWFSE-------SGKLVAKMFQ 239 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH----------HHHhh-------hhhHHHHHHH
Confidence 6899999999999999999999954 4445444443 13233222 11111 0011122344
Q ss_pred HHHHhhCCC--eEEEEEeCCCChhH-----------------hhHHhcCCCCCCCC-ceEEEEeCChh-hHhh--c-CCC
Q 047309 124 ILGSRLQHK--KVLLVIDDVVDIKQ-----------------LEYLAGKREWFGSG-SRIIVTSRDEH-LLKT--Y-GMD 179 (218)
Q Consensus 124 ~l~~~l~~~--~~livlD~~~~~~~-----------------~~~l~~~~~~~~~~-~~ilittr~~~-~~~~--~-~~~ 179 (218)
.|.+...++ -..++||++++... +.+++..+...+.. ..+|++|.+-. .... . +.+
T Consensus 240 kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRAD 319 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRAD 319 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhh
Confidence 455555443 34456898864322 33444333322322 34455555531 1111 1 224
Q ss_pred ceeeCCCCChhHHHHHHHHhh
Q 047309 180 EIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 180 ~~~~l~~L~~~e~~~l~~~~~ 200 (218)
-...+.|=+.+...+.++.+.
T Consensus 320 i~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred heeecCCccHHHHHHHHHHHH
Confidence 446778888888888777654
No 155
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.42 E-value=2e-06 Score=66.97 Aligned_cols=52 Identities=25% Similarity=0.231 Sum_probs=36.2
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.+.+..+.++.... ++..-++++|++|+|||+||.++++++......+.|+
T Consensus 88 ~~~~l~~~~~~~~~~--~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 88 DKKALEDLASLVEFF--ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred hHHHHHHHHHHHHHh--ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 444445554444333 2556788999999999999999999887444555555
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.42 E-value=3.7e-06 Score=75.96 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=39.0
Q ss_pred ccccccchhHHHHHHhhhcC----C-C-CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 25 KKLVGIDSRLEELRSLMNKG----P-N-DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~----~-~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
...+|.+..++.+.+.+... . + ....+++++||+|+|||.||+.++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 46889999999998887431 1 1 22346889999999999999999987643
No 157
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.41 E-value=4.2e-07 Score=74.23 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCC-cccc----cc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDS-IWNV----GD 120 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~----~~ 120 (218)
..+..++|+|++|+|||||++.+++.+.. +|+..+|+...++... .+.++++.++..+....... .... ..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~---EVtDLqrsIlg~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPE---EVTDMQRSVKGEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCc---cHHHHHHHhhceEEEecCCCChHHHHHHHHH
Confidence 45567889999999999999999997644 4777788766545211 16677777643221111111 0000 11
Q ss_pred cHHHHHHh-hCCCeEEEEEeCCCC
Q 047309 121 GINILGSR-LQHKKVLLVIDDVVD 143 (218)
Q Consensus 121 ~~~~l~~~-l~~~~~livlD~~~~ 143 (218)
+....... ..+++.+|++|++..
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhH
Confidence 11222222 258899999999964
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.40 E-value=7.6e-06 Score=72.81 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=39.1
Q ss_pred ccccccchhHHHHHHhhhcC------CCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 25 KKLVGIDSRLEELRSLMNKG------PNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...+|.+..++.+...+... .......++++||+|+|||.+|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999998887631 112235689999999999999999998773
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9.4e-06 Score=65.59 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-hHhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 131 HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-LLKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 131 ~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
++.=++|||+++.+ .....++..+..-..+..+|++|.+.. +... .++...+.+.+++.+++.+.+.+..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc
Confidence 34446788999864 445666665554455667777777653 3322 3457789999999999999998764
No 160
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.36 E-value=3.6e-06 Score=66.19 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=72.3
Q ss_pred ccccccc---chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc-----ceEEEEechhhhccCch
Q 047309 24 LKKLVGI---DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE-----GSSFLADVREKFKNKGS 95 (218)
Q Consensus 24 ~~~~~gR---~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 95 (218)
.+.|+|- ...++.|.+++..+...+.+.+.|+|++|+|||++++.+++.....++ .-++...+.. .++
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~----~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP----EPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC----CCC
Confidence 4457774 455667788888876677788999999999999999999985433321 1122222222 222
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCC-CeEEEEEeCCCC
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQH-KKVLLVIDDVVD 143 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~livlD~~~~ 143 (218)
...+...++..+.... ................++. +.=+||||++++
T Consensus 109 ~~~~Y~~IL~~lgaP~-~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 109 ERRFYSAILEALGAPY-RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred hHHHHHHHHHHhCccc-CCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 6788888888765443 2233334444444444432 233899999976
No 161
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.34 E-value=5.2e-07 Score=63.76 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=33.4
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+|+...++++.+.+.... .....|+|+|++|+||+++|+.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577888888877776533 445788999999999999999887743
No 162
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.33 E-value=1.2e-05 Score=69.54 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=41.2
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.+..++++.+.+.... .....|+|+|++|+||+++|+.+.+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345579999999999988886543 344678899999999999999988754
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-05 Score=68.63 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR 128 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (218)
+.-|++|||+|+|||-||++|+++....| + .+.. .+++..+.-. +.-.+...|.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----i-sVKG--------PELlNkYVGE----------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----I-SVKG--------PELLNKYVGE----------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----E-eecC--------HHHHHHHhhh----------HHHHHHHHHHHh
Confidence 56688999999999999999999654332 2 1111 1122211111 011122333333
Q ss_pred hCCCeEEEEEeCCCChh-------------HhhHHhcCCCCC--CCCceEEEEeCChhhH-hh----cCCCceeeCCCCC
Q 047309 129 LQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF--GSGSRIIVTSRDEHLL-KT----YGMDEIYKPNELN 188 (218)
Q Consensus 129 l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~--~~~~~ilittr~~~~~-~~----~~~~~~~~l~~L~ 188 (218)
-...+++|+||+++..- .+..++..+.-. ..|..||-.|..+++. .. .+-+..+-+..=+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 35779999999997421 134444444322 3444445444433331 11 2235677788788
Q ss_pred hhHHHHHHHHhhcCCC---CCCchhHhhhc
Q 047309 189 YHDALQLFNMKAFKIQ---KPLEECVQLSE 215 (218)
Q Consensus 189 ~~e~~~l~~~~~~~~~---~~~~~~~~i~~ 215 (218)
.+|..++++....... +.+-.+++||.
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 8899999988876321 24455666664
No 164
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.3e-06 Score=64.80 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=36.6
Q ss_pred ccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 25 KKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+...|-+..-++|.+.+.- .....-+-++++||+|+|||.||++|+.+....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 3456666666666655422 222335789999999999999999999876433
No 165
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.30 E-value=3.3e-06 Score=61.34 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=72.6
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHH-
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEI- 107 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 107 (218)
|.+...+.|.+.+... .-+..++++|+.|+||+++|..+++.+-.......... .......+....
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~-----------~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCG-----------ECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--S-----------SSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCC-----------CCHHHHHHHhccC
Confidence 5566777788888663 22346899999999999999999986522111100000 001111110000
Q ss_pred ---hhccCCC---cccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-hH
Q 047309 108 ---LKLEKDS---IWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-LL 173 (218)
Q Consensus 108 ---~~~~~~~---~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~~ 173 (218)
....+.. ....+.+. .+...+ .+..=++|||+++.+ ....+++..+..-..++.+|++|.+.. +.
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred cceEEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 0000000 11112222 222222 134559999999864 445666665554466788888888764 32
Q ss_pred hh-cCCCceeeCCCCC
Q 047309 174 KT-YGMDEIYKPNELN 188 (218)
Q Consensus 174 ~~-~~~~~~~~l~~L~ 188 (218)
.. .++...+.+.++|
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 22 3556777877765
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.30 E-value=1.1e-05 Score=61.04 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=40.2
Q ss_pred ccccccccchhHHHHHHhhhc-CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK-GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEG 79 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~-~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~ 79 (218)
....++|-+...+.|.+.-.. .......-|++||..|+|||+|++++...+.+.+..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 344588877776666444322 111344678899999999999999999988766544
No 167
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.29 E-value=2.6e-06 Score=65.25 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
.|-+++...- ....++.|+|++|+|||+++.+++.........++|+.
T Consensus 11 ~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445554322 56789999999999999999999987655556677774
No 168
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=3.1e-06 Score=69.02 Aligned_cols=99 Identities=17% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcc
Q 047309 38 RSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIW 116 (218)
Q Consensus 38 ~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 116 (218)
.+++... ..+.-.+|.|++|+|||||++.+++.... +|+..+|++..++... .+.++++.+...+... ....
T Consensus 160 ID~l~PI--GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~---EVtdiqrsIlg~vv~s--t~d~ 232 (416)
T PRK09376 160 IDLIAPI--GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE---EVTDMQRSVKGEVVAS--TFDE 232 (416)
T ss_pred eeeeccc--ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh---HHHHHHHHhcCcEEEE--CCCC
Confidence 3444443 34556778999999999999999996643 6888888876666211 1555555554211100 0111
Q ss_pred ccc-------ccHHHHHHh-hCCCeEEEEEeCCCC
Q 047309 117 NVG-------DGINILGSR-LQHKKVLLVIDDVVD 143 (218)
Q Consensus 117 ~~~-------~~~~~l~~~-l~~~~~livlD~~~~ 143 (218)
++. ..+..-... ..+++.+|++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111 111111222 257899999999964
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.27 E-value=1e-05 Score=73.19 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=38.9
Q ss_pred cccccccchhHHHHHHhhhcC-----CCCC-ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----PNDD-VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----~~~~-~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|.+..++.+...+... ...+ ...++++||+|+|||+||+.+++.+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 356899999999998877531 1122 24577999999999999999998764
No 170
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.26 E-value=9.1e-06 Score=65.79 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++|++..++++.+.+.... .....|+|+|++|+||+++|+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888877776543 345678899999999999999887643
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.26 E-value=3.2e-06 Score=70.19 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=42.0
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc--cccceEEE
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH--EFEGSSFL 83 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~--~~~~~~~~ 83 (218)
.+.+++.+..++.+...+.. .+.++++|++|+|||++|+.++..+.. .+..+.|+
T Consensus 174 l~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 34577888899999888864 357889999999999999999987643 23344444
No 172
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.26 E-value=1.3e-05 Score=61.61 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=84.0
Q ss_pred ccccccccchhHHH---HHHhhhcCC---CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 23 TLKKLVGIDSRLEE---LRSLMNKGP---NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 23 ~~~~~~gR~~e~~~---l~~~l~~~~---~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
+....+|.+..-.. |.++|.++. +..++.|+.+||+|+|||.+|+++++...-.+- .....+
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l----~vkat~-------- 186 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL----LVKATE-------- 186 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE----EechHH--------
Confidence 44557887665544 466666543 256789999999999999999999986543321 111111
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--------------HhhHHhcCCCCCCCC--
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--------------QLEYLAGKREWFGSG-- 160 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--------------~~~~l~~~~~~~~~~-- 160 (218)
++-....+ ....+.......-+..+++++||+++... .+.+++..+...+.+
T Consensus 187 --liGehVGd----------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 187 --LIGEHVGD----------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred --HHHHHhhh----------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 11100000 00011111222224568999999986421 244555555433333
Q ss_pred ceEEEEeCChhhHhh---cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 161 SRIIVTSRDEHLLKT---YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 161 ~~ilittr~~~~~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
...|-.|.+.+++.. .+-...++..-=+++|..+++..++.
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 233334444443222 11134466666678888888887764
No 173
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.25 E-value=1.4e-05 Score=64.72 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..++|++..++++.+.+.... .....|+|+|++|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458999999999988886643 34567889999999999999988764
No 174
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.23 E-value=4.7e-06 Score=63.52 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..|..++...- ....++.|+|++|+|||+|+.+++.........++|+
T Consensus 6 ~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 6 KGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred hHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 44555554322 5678999999999999999999998765555566666
No 175
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3e-05 Score=63.78 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR 128 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (218)
.|--+++||||+|||+++.++++.+ ..-++...+.+...+ .+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n----~d-Lr~LL~~---------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD----SD-LRHLLLA---------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc----HH-HHHHHHh----------------------
Confidence 4667899999999999999999854 233333333332211 11 3333332
Q ss_pred hCCCeEEEEEeCCCChhH--------------------hhHHhcCCC--CC-CCCceEEE-EeCChhhHh--hc---CCC
Q 047309 129 LQHKKVLLVIDDVVDIKQ--------------------LEYLAGKRE--WF-GSGSRIIV-TSRDEHLLK--TY---GMD 179 (218)
Q Consensus 129 l~~~~~livlD~~~~~~~--------------------~~~l~~~~~--~~-~~~~~ili-ttr~~~~~~--~~---~~~ 179 (218)
...+.+|||.|+|..-+ +.-++..+. +. +.+.+|+| ||-..+-+. .+ +.+
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 24566888888863210 111221111 11 12347766 555433211 11 224
Q ss_pred ceeeCCCCChhHHHHHHHHhhcCCCCCCchhHhhhc
Q 047309 180 EIYKPNELNYHDALQLFNMKAFKIQKPLEECVQLSE 215 (218)
Q Consensus 180 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~i~~ 215 (218)
--+++.-=+.+....|+..+++... +.+.+++|.+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~ 397 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIER 397 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHH
Confidence 4588999999999999999976543 4555666554
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.22 E-value=5.2e-05 Score=61.16 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=80.9
Q ss_pred ccccchhHHHHHHhhhcCCCCCce-EEEEEcCCCccHHHHHHHHHHhhccccc---------------------ceEEEE
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVR-MIGICGMGGLGKTNLARVVYDLISHEFE---------------------GSSFLA 84 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~-~v~i~G~~GiGKT~La~~v~~~~~~~~~---------------------~~~~~~ 84 (218)
++|-+.....+..+..... +.. .++++||+|+|||++|..+++.+..... .+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~--~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel- 79 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG--RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL- 79 (325)
T ss_pred cccchhHHHHHHHHHHhcC--CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe-
Confidence 5677777888877776432 233 5999999999999999999997642211 11111
Q ss_pred echhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCce
Q 047309 85 DVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSR 162 (218)
Q Consensus 85 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ 162 (218)
+... ....+...+..+.+......... .++.-+++||+++.+. .-..++..+..-.....
T Consensus 80 ~~s~-~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 80 NPSD-LRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccc-cCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 0000 00000012222222222111000 2456699999998754 34555555554466677
Q ss_pred EEEEeCCh-hhHhhc-CCCceeeCCCCChhHHHHHH
Q 047309 163 IIVTSRDE-HLLKTY-GMDEIYKPNELNYHDALQLF 196 (218)
Q Consensus 163 ilittr~~-~~~~~~-~~~~~~~l~~L~~~e~~~l~ 196 (218)
+++++... .+...+ +.+..+.+.|.+..+.....
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWL 177 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHHHHHHh
Confidence 77777643 333322 34666778775544444333
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.22 E-value=4.3e-06 Score=63.09 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=39.7
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....||-++-++.+.-.... ...+.++|.||||+||||=+..+++.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 345689999999998877765 446778899999999999998888865
No 178
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.1e-05 Score=57.64 Aligned_cols=156 Identities=15% Similarity=0.242 Sum_probs=89.1
Q ss_pred ccccccccccc-chhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 20 KSETLKKLVGI-DSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 20 ~~~~~~~~~gR-~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.|.++-..+|+ +..+++|.+.++-+. =.+++-++++|++|+|||-||+.+++.- .+.|+ .+..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fi-rvsg 214 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFI-RVSG 214 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEE-Eech
Confidence 34455567775 888888887775422 1567889999999999999999999732 12222 2221
Q ss_pred hhccCchHHHHHHHHHHHHhhccCCCcccccc-cHHHHHHhhCCCeEEEEEeCCCChh------------Hh----hHHh
Q 047309 89 KFKNKGSVISFQRQLLVEILKLEKDSIWNVGD-GINILGSRLQHKKVLLVIDDVVDIK------------QL----EYLA 151 (218)
Q Consensus 89 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~livlD~~~~~~------------~~----~~l~ 151 (218)
.++.+.+... + .+ +.+.|...-+..+.+|++|++++.. ++ -.++
T Consensus 215 --------selvqk~ige----g-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlell 275 (404)
T KOG0728|consen 215 --------SELVQKYIGE----G-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELL 275 (404)
T ss_pred --------HHHHHHHhhh----h-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHH
Confidence 1122222111 0 00 1222222334668899999986421 11 1222
Q ss_pred cCCC--CCCCCceEEEEeCChhhHhh--c---CCCceeeCCCCChhHHHHHHHHhh
Q 047309 152 GKRE--WFGSGSRIIVTSRDEHLLKT--Y---GMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 152 ~~~~--~~~~~~~ilittr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
..+. ...++.++|..|..-+++.. + +.+..++.+|=+++...++++-+.
T Consensus 276 nqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 276 NQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2222 11356677776554443222 1 235568999999998888888664
No 179
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.5e-05 Score=69.77 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=86.1
Q ss_pred ccccccch---hHHHHHHhhhcCCC------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCch
Q 047309 25 KKLVGIDS---RLEELRSLMNKGPN------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 25 ~~~~gR~~---e~~~l~~~l~~~~~------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
.++.|-++ |+.++.++|.++.. .-++-++|+||+|+|||-||++++.+.. +-|+...++.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSEF----- 380 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSEF----- 380 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechHHH-----
Confidence 45667554 55555666654321 3367789999999999999999998643 22332222211
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-----------------hHhhHHhcCCCCCC
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-----------------KQLEYLAGKREWFG 158 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-----------------~~~~~l~~~~~~~~ 158 (218)
.+ .+.+ .....+.+.+...-.+.+.+|.+|+++.. ..+..++..+.-..
T Consensus 381 -vE-------~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 381 -VE-------MFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -HH-------Hhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11 1111 01223344444444577899999988631 11444544443223
Q ss_pred CCc-eEEE-EeCChhhHhh--c---CCCceeeCCCCChhHHHHHHHHhhcCCC
Q 047309 159 SGS-RIIV-TSRDEHLLKT--Y---GMDEIYKPNELNYHDALQLFNMKAFKIQ 204 (218)
Q Consensus 159 ~~~-~ili-ttr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~ 204 (218)
.+. .|++ +|...+++.. + +-+..+.++.=+.....++|+-|+....
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence 333 3334 3333333221 1 2245577777788888888888875544
No 180
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.19 E-value=1.2e-05 Score=58.72 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++|.+..++++.+.+.... .....|+|+|++|+||+.+|+.+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a-~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-SSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-TSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHh-CCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4688888888887776633 334678899999999999999988743
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.19 E-value=1.4e-05 Score=60.01 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCC
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKD 113 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 113 (218)
.+.+...+.. ..++++|.|++|+|||+++..+...+......+.++..... ....+.....
T Consensus 7 ~~a~~~~l~~----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~----------Aa~~L~~~~~----- 67 (196)
T PF13604_consen 7 REAVRAILTS----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK----------AAKELREKTG----- 67 (196)
T ss_dssp HHHHHHHHHC----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH----------HHHHHHHHHT-----
T ss_pred HHHHHHHHhc----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH----------HHHHHHHhhC-----
Confidence 3444445443 23689999999999999999988876655433333322222 1122222211
Q ss_pred CcccccccHHHHHHhh---------CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 114 SIWNVGDGINILGSRL---------QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 114 ~~~~~~~~~~~l~~~l---------~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
.....+...+.... ..+.-+||+|++... ..+..+..... ..+.++|+..-..
T Consensus 68 --~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 68 --IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp --S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred --cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 00011111111110 122359999999764 34555555443 3577888876654
No 182
>PHA00729 NTP-binding motif containing protein
Probab=98.18 E-value=1.3e-05 Score=60.93 Aligned_cols=26 Identities=31% Similarity=0.169 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|+|++|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999998753
No 183
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.18 E-value=3.1e-06 Score=64.09 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEe
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLAD 85 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~ 85 (218)
...+++.|+|++|+|||+++.+++.........++|+..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 567899999999999999999999876555566777743
No 184
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.18 E-value=1.4e-06 Score=61.50 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|+|+|++|+|||+|++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999977
No 185
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.18 E-value=3e-05 Score=68.31 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=80.2
Q ss_pred cccccchhHHHHHHhhhcCC---------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 26 KLVGIDSRLEELRSLMNKGP---------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~---------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
.+.|-+...+++.+.+.... ..-.+-++++|++|+|||++++.++.+....|- .+ .... +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~i-s~~~-------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TI-SGSD-------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EE-ehHH-------h
Confidence 45566655555554443211 011345899999999999999999986643321 11 1111 1
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCCCC--
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFG-- 158 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~~~-- 158 (218)
... . .+ .....+...+.......+.+|+||+++... .+..++..+....
T Consensus 222 ~~~---~----~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 222 VEM---F----VG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred HHh---h----hc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 000 0 00 011122233333334567899999986431 1223332222112
Q ss_pred CCceEEEEeCChhhHh-hc----CCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 159 SGSRIIVTSRDEHLLK-TY----GMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 159 ~~~~ilittr~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
.+.-+|.||...+... .+ +-+..+.+..-+.++..++++.+....
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 2223333555443211 11 124568888888889999998887554
No 186
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.17 E-value=3.3e-06 Score=68.25 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=42.4
Q ss_pred cccccccchhHHHHHHhhhcCC---CCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 24 LKKLVGIDSRLEELRSLMNKGP---NDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~---~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
...++|-++.+.++.+++.... +.+.++++|+||+|+||||||+.+++.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3379999999999988886521 245688999999999999999999997644
No 187
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.16 E-value=1e-05 Score=62.36 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
..|-+.|...- +..+++.|+|++|+|||+|+.+++....++...+.|+.
T Consensus 12 ~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34455554432 66789999999999999999999876544556666763
No 188
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.16 E-value=1.2e-05 Score=61.62 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEE
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLA 84 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~ 84 (218)
.|.++|...- ....++.|+|++|+|||+|+..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3444454322 5678999999999999999999987654444 4556663
No 189
>PRK04296 thymidine kinase; Provisional
Probab=98.16 E-value=3.1e-06 Score=63.18 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=58.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccC-CCcccccccHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEK-DSIWNVGDGINILGSR 128 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 128 (218)
.+.+++|++|.||||++..++.+...+...+.++ .. .+.. ......+..++..... .......++...+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~-k~--~~d~----~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF-KP--AIDD----RYGEGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE-ec--cccc----cccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 5788999999999999999998775554444433 11 0000 0001111222110000 001122233333433
Q ss_pred hCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 129 LQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 129 l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
..++.-+||+|+++-. +++..+...+. ..+..+++|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2344568999999653 32444433322 56778999988843
No 190
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.8e-05 Score=67.77 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...+.++++||+|+|||.||+.++......|-.+. ..+..+.+ +.. +...+...+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~----~~~l~sk~--vGe------------------sek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK----GSELLSKW--VGE------------------SEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee----CHHHhccc--cch------------------HHHHHHHHHH
Confidence 44568999999999999999999996544432111 11111100 001 1111223333
Q ss_pred HhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCCCCCce-EEE-EeCChhhHh-hc----CCCceeeCCC
Q 047309 127 SRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWFGSGSR-IIV-TSRDEHLLK-TY----GMDEIYKPNE 186 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~~~~~~-ili-ttr~~~~~~-~~----~~~~~~~l~~ 186 (218)
...+..+.+|+||+++... ....++..+........ +++ +|-...... .+ +-...+.+++
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 3445778999999996421 22333333322222222 333 333332211 11 2256789999
Q ss_pred CChhHHHHHHHHhhcC
Q 047309 187 LNYHDALQLFNMKAFK 202 (218)
Q Consensus 187 L~~~e~~~l~~~~~~~ 202 (218)
=+.++..+.|+.+...
T Consensus 410 pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 410 PDLEERLEIFKIHLRD 425 (494)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999999763
No 191
>PTZ00494 tuzin-like protein; Provisional
Probab=98.15 E-value=6e-05 Score=62.38 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=99.8
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
....+++.|++|-..+.+.|.......+++++++|..|+|||+|.+..... ..-..+|+ .++. ..+.++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~V-DVRg-------~EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHV-DVGG-------TEDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEE-EecC-------CcchHH
Confidence 456679999999999999998877788999999999999999999877763 22233444 4444 233344
Q ss_pred HHHHHHhhccCCCcccccccHHHHHHhh-------CCCeEEEEEe--CCCChhH-hhHHhcCCCCCCCCceEEEEeCChh
Q 047309 102 QLLVEILKLEKDSIWNVGDGINILGSRL-------QHKKVLLVID--DVVDIKQ-LEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l-------~~~~~livlD--~~~~~~~-~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
.+.+.+.-. ..+.+.++.+.+.+.. .++..+||+- +=.+..- +.+... +.-...-|.|++----+.
T Consensus 437 sVVKALgV~---nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplES 512 (664)
T PTZ00494 437 SVVRALGVS---NVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKA 512 (664)
T ss_pred HHHHHhCCC---ChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhh
Confidence 444443322 2334445555544432 3555555543 3333222 222221 221244566765322221
Q ss_pred h--H-hhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 172 L--L-KTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 172 ~--~-~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+ . ..+...+.|.+++|+.+++.+|.+...
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 1 1 113456789999999999999998775
No 192
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.14 E-value=2.2e-05 Score=60.66 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
..|-++|...- ...+.++|.|++|+|||+|+.+++....+....++|+.
T Consensus 8 ~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 44555565433 56789999999999999999988875444566777774
No 193
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.13 E-value=9.9e-06 Score=65.87 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=57.9
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHHHHHHHHHHhhcc
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISFQRQLLVEILKLE 111 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (218)
...++.+.+... .+..-.+|+|++|+|||||++.+++.+.... +..+++..+.+.... +.++.+.+...+....
T Consensus 119 ~~~RvID~l~Pi--GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~E---V~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPI--GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEE---VTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeec--CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCC---HHHHHHHHhhhEEeec
Confidence 334456666554 3344568999999999999999998765443 333344345543221 5566666655332211
Q ss_pred C-CCccc---ccccH-HHHHHhh-CCCeEEEEEeCCC
Q 047309 112 K-DSIWN---VGDGI-NILGSRL-QHKKVLLVIDDVV 142 (218)
Q Consensus 112 ~-~~~~~---~~~~~-~~l~~~l-~~~~~livlD~~~ 142 (218)
. .+... ..... .....+. .+++.+||+|++.
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 0 01101 11111 1112221 5889999999985
No 194
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.13 E-value=1e-05 Score=58.23 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=25.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++|+|++|+|||+++..++.........+.|+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 67999999999999999998775554555555
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.0001 Score=59.31 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=85.7
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
+..-+.+.+.+... .-.....++|+.|+||+++|..+++.+ +..-.... .++ ....++.+... .+
T Consensus 8 ~~~~~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg--------~C~sC~~~~~g-~H 73 (325)
T PRK06871 8 QPTYQQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCG--------QCHSCHLFQAG-NH 73 (325)
T ss_pred HHHHHHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC--------CCHHHHHHhcC-CC
Confidence 34455666666542 123467799999999999999999864 21100000 000 11111111110 00
Q ss_pred c-----cC--CCcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhHh
Q 047309 110 L-----EK--DSIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLLK 174 (218)
Q Consensus 110 ~-----~~--~~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~~ 174 (218)
+ .+ ...-.++.+.+ +.+.+ .++.=++|||+++.+ .....++..+..-..+..+|++|.+. .+..
T Consensus 74 PD~~~i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llp 152 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLP 152 (325)
T ss_pred CCEEEEccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCch
Confidence 0 00 00111222222 22222 244558999999864 34567776666545666677777664 3333
Q ss_pred h-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 175 T-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 175 ~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
. .++...+.+.+++.++..+.+.+..
T Consensus 153 TI~SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 153 TIYSRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHh
Confidence 3 3457889999999999999988763
No 196
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00024 Score=57.16 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=84.0
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEEEechh-hhccCchHHHHHHHHHHH
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFLADVRE-KFKNKGSVISFQRQLLVE 106 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 106 (218)
.-+...+.+.+.+... .-...++++|+.|+||+++|..+++.+ ...-.......++.- .....+++..+.
T Consensus 8 W~~~~~~~l~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------ 79 (319)
T PRK08769 8 WQQRAYDQTVAALDAG--RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------ 79 (319)
T ss_pred cHHHHHHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------
Confidence 3455566677776552 123468899999999999999999854 211000000000000 000000000000
Q ss_pred HhhccCCC-cccccccHHHHHHh---h-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhHh
Q 047309 107 ILKLEKDS-IWNVGDGINILGSR---L-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLLK 174 (218)
Q Consensus 107 ~~~~~~~~-~~~~~~~~~~l~~~---l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~~ 174 (218)
....... .....-.++.+++. + .++.=++|||+++.+ ..-..++..+..-..++.+|++|.+. .+..
T Consensus 80 -~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 80 -FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -cCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 0000000 00000112222222 2 244559999999864 34556666555445667777776654 3333
Q ss_pred h-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 175 T-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 175 ~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
. .+....+.+.+++.+++.+.+.+.
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 3 345778999999999999888764
No 197
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.12 E-value=2.9e-05 Score=66.62 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=42.3
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....++|++..+.++.+.+.... .....|+|+|++|+||+++|+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45679999999999988887643 4456888999999999999999988543
No 198
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.5e-05 Score=63.64 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=40.5
Q ss_pred hhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 32 SRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 32 ~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.-+.++.+.|...- -...+++|-|.||+|||||+.+++.++.++. .+.|+ ...+
T Consensus 77 tg~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYV-sGEE 130 (456)
T COG1066 77 TGIEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYV-SGEE 130 (456)
T ss_pred CChHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEE-eCCc
Confidence 34566666665533 4567899999999999999999999887776 66777 4444
No 199
>PRK06696 uridine kinase; Validated
Probab=98.10 E-value=7.4e-06 Score=62.73 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=39.1
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.|.+.+++|.+.+.........+|+|.|.+|+||||||+.+++.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467778888888865444667899999999999999999999977543
No 200
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.09 E-value=3.5e-05 Score=57.92 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=60.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL 129 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 129 (218)
+.++|.|++|+||||++..++..+.......++............ . ..+. .+. ............++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-~----~~~i----~q~-~vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-K----RSLI----NQR-EVGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-c----ccee----eec-ccCCCccCHHHHHHHHh
Confidence 578999999999999999888876544332222211111000000 0 0000 000 00112234456677777
Q ss_pred CCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhH
Q 047309 130 QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLL 173 (218)
Q Consensus 130 ~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~ 173 (218)
...+-+|++|++.+.+.+...+... ..|..++.|+...+..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 7678899999998766555443321 3455577777765443
No 201
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.08 E-value=4.8e-05 Score=65.44 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=38.2
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-..++|.+..++++.+.+.... .....|+|+|++|+||+.+|+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA-MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh-CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 445579999998888877665422 23467889999999999999987653
No 202
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.08 E-value=1.3e-05 Score=61.72 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc------ccceEEEEechh
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE------FEGSSFLADVRE 88 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~------~~~~~~~~~~~~ 88 (218)
|.+++...- ....++.|+|++|+|||+|+.+++...... ...++|+ +...
T Consensus 8 lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi-~~e~ 63 (235)
T cd01123 8 LDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI-DTEG 63 (235)
T ss_pred hHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEE-eCCC
Confidence 344444322 567899999999999999999998643222 2566666 4433
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.07 E-value=4.1e-05 Score=68.12 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.5
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.....++|++..+.++.+.+.... .....|+|+|++|+|||++|+.+.....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 344579999999999877765432 3346888999999999999999987543
No 204
>PRK04328 hypothetical protein; Provisional
Probab=98.06 E-value=3.3e-05 Score=60.13 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
.|-++|...- +..+.++|.|++|+|||+|+.+++.+..+....++|+.
T Consensus 11 ~LD~lL~GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4455554432 56789999999999999999998876444556677773
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00025 Score=57.50 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=84.7
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEEEechhhhccCchHHHHHHHHHHHHh
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFLADVREKFKNKGSVISFQRQLLVEIL 108 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 108 (218)
-+..-+++.+.+... .-....+++|+.|+||+++|..+++.+ +..-.... .++ ....++.+... .
T Consensus 7 l~~~~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg--------~C~sC~~~~~g-~ 72 (334)
T PRK07993 7 LRPDYEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCG--------HCRGCQLMQAG-T 72 (334)
T ss_pred ChHHHHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC--------CCHHHHHHHcC-C
Confidence 344556666666542 223478899999999999999999865 21100000 000 01111111100 0
Q ss_pred hc-----cCC---CcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hh
Q 047309 109 KL-----EKD---SIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HL 172 (218)
Q Consensus 109 ~~-----~~~---~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~ 172 (218)
++ .+. ..-.++.+. .+.+.+ .++.=++|||+++.+ .....++..+..-..+..+|++|.+. .+
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL 151 (334)
T ss_pred CCCEEEEecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00 000 011112222 222222 245569999999864 34566766665545566666666664 34
Q ss_pred Hhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 173 LKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 173 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
... .+..+.+.+.+++.+++.+.+.+.
T Consensus 152 LpTIrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 152 LATLRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred hHHHHhccccccCCCCCHHHHHHHHHHc
Confidence 333 345677899999999999888764
No 206
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00016 Score=55.67 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=39.4
Q ss_pred ccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+..-|-+..+++|.+.+-- ..-..++-++++||+|+|||-+|+..+.+-...
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 445577889999998777622 111345678899999999999999988754433
No 207
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.04 E-value=2.1e-05 Score=63.03 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred hHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc
Q 047309 33 RLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE 111 (218)
Q Consensus 33 e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (218)
-+..|..+|. ..- +..+++.|+|++|+|||+|+..++.........++|+ ......++ ...+.+--.+....
T Consensus 39 Gi~~LD~~Lg~GGl-p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI-d~E~~~~~-----~~a~~lGvd~~~l~ 111 (321)
T TIGR02012 39 GSLSLDLALGVGGL-PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI-DAEHALDP-----VYARKLGVDIDNLL 111 (321)
T ss_pred CCHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-cccchhHH-----HHHHHcCCCHHHeE
Confidence 3445556664 322 6778999999999999999999888766665666777 33332211 11111100011111
Q ss_pred CCCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 112 KDSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 112 ~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
.......+.....+....+ +..-+||+|.+.
T Consensus 112 v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 112 VSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred EecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 1111223334444544443 456799999874
No 208
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.04 E-value=2.1e-05 Score=63.14 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=58.0
Q ss_pred hHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHH---HHHHh
Q 047309 33 RLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQL---LVEIL 108 (218)
Q Consensus 33 e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~ 108 (218)
-+..|..+|. ..- +..+++.|+|++|+|||+|+.+++.........++|+ +.....+ ...++.+ +..+.
T Consensus 39 Gi~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyI-d~E~~~~-----~~~a~~lGvd~~~l~ 111 (325)
T cd00983 39 GSLSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFI-DAEHALD-----PVYAKKLGVDLDNLL 111 (325)
T ss_pred CCHHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-CccccHH-----HHHHHHcCCCHHHhe
Confidence 3444555665 322 6778999999999999999999988766666667777 3333222 1111111 11111
Q ss_pred hccCCCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 109 KLEKDSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
. ....+.++....+....+ +..-+||+|.+.
T Consensus 112 v---~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 112 I---SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred e---cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 1 112233444555555443 456699999873
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.03 E-value=3.3e-06 Score=63.32 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=56.8
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh--cccccceEEEEechhhhc----cCchHHH----H
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI--SHEFEGSSFLADVREKFK----NKGSVIS----F 99 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~----i 99 (218)
++.+-....+.+.. ...+++.|++|+|||.||...+-+. ...|..+++.-..-+... .++++.+ -
T Consensus 5 ~~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44555555666653 3589999999999999998887643 344555544322111000 0010111 1
Q ss_pred HHHHHHHHhhccCCCcccccccHHHH---------HHhhCCC---eEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEE
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINIL---------GSRLQHK---KVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIV 165 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~---~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ili 165 (218)
..-+...+.... ....+...+ -.+++|. ..+||+|++++. .++..++.. ...+|++++
T Consensus 80 ~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 111111111110 001111111 1233454 458999999874 456666544 467899999
Q ss_pred EeCCh
Q 047309 166 TSRDE 170 (218)
Q Consensus 166 ttr~~ 170 (218)
+.-..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86643
No 210
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.02 E-value=3.4e-05 Score=60.33 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc-----cCCCccccc--
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL-----EKDSIWNVG-- 119 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~-- 119 (218)
.++.-+.|.|.+|+|||+|+..++++..++|...+++..+++.... +.++.+.+...-... -.....+..
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 4456788999999999999999999887677666666677764321 444444443320000 000111111
Q ss_pred ----ccHHHHHHhh--C-CCeEEEEEeCCCC
Q 047309 120 ----DGINILGSRL--Q-HKKVLLVIDDVVD 143 (218)
Q Consensus 120 ----~~~~~l~~~l--~-~~~~livlD~~~~ 143 (218)
...-.+-+++ + +++.||++|++..
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1111233444 3 8899999999853
No 211
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.02 E-value=5.3e-05 Score=59.48 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=60.6
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
.+..++.+.+++.. ..+.++|.|++|+||||++..+...+......++.+.+..+..- .. . ..
T Consensus 65 ~~~~~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~-~-----------~q 127 (264)
T cd01129 65 KPENLEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PG-I-----------NQ 127 (264)
T ss_pred CHHHHHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CC-c-----------eE
Confidence 34455556666643 34689999999999999999988866433223333322222110 00 0 00
Q ss_pred ccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHh
Q 047309 110 LEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLA 151 (218)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~ 151 (218)
.. ............++..++..+-.|+++++.+.+....+.
T Consensus 128 ~~-v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 128 VQ-VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred EE-eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 00 000111235666777788888899999998877655443
No 212
>PRK09354 recA recombinase A; Provisional
Probab=98.02 E-value=2.7e-05 Score=62.97 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=59.5
Q ss_pred hHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc
Q 047309 33 RLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE 111 (218)
Q Consensus 33 e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 111 (218)
-+..|..+|. ..- +..+++.|+|++|+|||+|+.+++.........++|+ ......+ ....+.+--.+....
T Consensus 44 Gi~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yI-d~E~s~~-----~~~a~~lGvdld~ll 116 (349)
T PRK09354 44 GSLALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFI-DAEHALD-----PVYAKKLGVDIDNLL 116 (349)
T ss_pred CcHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-CCccchH-----HHHHHHcCCCHHHeE
Confidence 3445666665 322 6778999999999999999999988776666677777 4443322 111122111111111
Q ss_pred CCCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 112 KDSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 112 ~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
.....+.++....+....+ +..-+||+|.+.
T Consensus 117 i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 117 VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1112233344455555443 456699999974
No 213
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.9e-05 Score=61.56 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=42.7
Q ss_pred cccccccccccchhHHHHHHhhhcCCC----------CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGPN----------DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~~----------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+..+..+.-|-+..+++|.+.++-+-. ..++-|.++|++|+|||-||++|+++-...
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 334555677889999999888754221 345678899999999999999999865444
No 214
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.01 E-value=3.5e-05 Score=63.27 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+..+.+.|...- ....++.|.|++|+|||+|+.+++.........++|+
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv 116 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV 116 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 445556664422 4567999999999999999999998765554456666
No 215
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00019 Score=62.74 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred cccccchhHHHHHHhhhcCC--------C-CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 26 KLVGIDSRLEELRSLMNKGP--------N-DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~--------~-~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
+.-|-++.-.+|.+-++-+- . .+.+-|+++||+|+|||-||++|+.+..-. |+ .+..
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----Fl-SVKG-------- 738 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FL-SVKG-------- 738 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EE-eecC--------
Confidence 35556666666665554311 1 224467899999999999999999854222 22 1111
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI 144 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~ 144 (218)
.+++..+. + .+...+.+.|.+.-..++++|+||++|+.
T Consensus 739 PELLNMYV----G------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 739 PELLNMYV----G------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHHh----c------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11221111 1 22234555666666788999999999864
No 216
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.98 E-value=6.8e-06 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 217
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.98 E-value=6.8e-06 Score=63.04 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=28.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++|.|++|+|||+|+..+...+.+.|..+.++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 566999999999999999999888888766655
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00052 Score=55.76 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=48.7
Q ss_pred CCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhHhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 131 HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLLKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 131 ~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
++.=++|||+++.+ .....++..+..-.++..+|++|.+. .+... .++...+.+.+++.++..+.+.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 34458999999864 45667776666556666666666554 34333 345788999999999999999875
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.97 E-value=4.4e-05 Score=57.17 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++++.++|++|+||||.+-+++..+......+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999999988888765454444444
No 220
>PRK14974 cell division protein FtsY; Provisional
Probab=97.97 E-value=0.00021 Score=57.85 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+.+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999898876544
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.4e-05 Score=67.63 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=74.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINIL 125 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (218)
...+.++|.|+.|+|||+|++.+++.+.+. +.++.++.|-...-.. +..++.. +-..+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~---~e~iQk~------------------l~~vf 487 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS---LEKIQKF------------------LNNVF 487 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh---HHHHHHH------------------HHHHH
Confidence 445789999999999999999999977543 3445555433332211 2222211 12334
Q ss_pred HHhhCCCeEEEEEeCCCChh--------H-------hhHHh----cCCCCCCCCc--eEEEEeCChhhHhh-cC---C-C
Q 047309 126 GSRLQHKKVLLVIDDVVDIK--------Q-------LEYLA----GKREWFGSGS--RIIVTSRDEHLLKT-YG---M-D 179 (218)
Q Consensus 126 ~~~l~~~~~livlD~~~~~~--------~-------~~~l~----~~~~~~~~~~--~ilittr~~~~~~~-~~---~-~ 179 (218)
.+.++-.+.+||+||++... + +..++ ..+. ..+. .+|.|..+...... +. . .
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq 565 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQ 565 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceE
Confidence 45566788899999996321 1 11111 1111 2233 34445544322111 11 1 3
Q ss_pred ceeeCCCCChhHHHHHHHHhhc
Q 047309 180 EIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 180 ~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+.|+++..++..+++.....
T Consensus 566 ~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 566 IVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred EEEecCCcchhHHHHHHHHHHH
Confidence 4578999999888888876653
No 222
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.96 E-value=0.00017 Score=60.36 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.++.++|++|+||||++..++..+.+....+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 467899999999999999999998776543333333
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=9.8e-05 Score=60.59 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++.+++.|++|+||||++..++..+..+...+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 457899999999999999999998765443334444
No 224
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.1e-05 Score=59.26 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=54.1
Q ss_pred cccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCch
Q 047309 26 KLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
..-|-+-.-+++++..+-+ .-..++-|+++||+|+|||.|++.|++.-...|- . ..++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi--r---vvgs------- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI--R---VVGS------- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee--e---eccH-------
Confidence 3455555555555554321 1155678999999999999999999985433321 1 1111
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCC
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVD 143 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~ 143 (218)
+..+. .++.++. -+.+.++-.-++.+.+|+||+++.
T Consensus 224 --efvqk----ylgegpr------mvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 224 --EFVQK----YLGEGPR------MVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred --HHHHH----HhccCcH------HHHHHHHHHhccCCcEEEeehhhh
Confidence 11111 1222211 123444444467889999999864
No 225
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.94 E-value=3.7e-05 Score=55.36 Aligned_cols=35 Identities=17% Similarity=-0.017 Sum_probs=26.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
+.+.|++.+|.||||+|...+-+...+...+.++.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778888899999999988887655555555543
No 226
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.94 E-value=1.2e-05 Score=68.52 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=41.8
Q ss_pred cccccchhHHHHHHhh----hcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 26 KLVGIDSRLEELRSLM----NKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l----~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.++|-++.+++|.+++ .... .+.++++++||+|+|||+||+.+++.+.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 5899999999999888 3333 566899999999999999999999966543
No 227
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00069 Score=54.50 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=84.2
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
...-+++.+.+... .-...+.++|+.|+||+++|..+++.+ ....... .++ .......+... .+
T Consensus 9 ~~~~~~l~~~~~~~--rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg--------~C~sC~~~~~g-~H 73 (319)
T PRK06090 9 VPVWQNWKAGLDAG--RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACG--------FCHSCELMQSG-NH 73 (319)
T ss_pred HHHHHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCC--------CCHHHHHHHcC-CC
Confidence 34455666666442 223478899999999999999999854 2111000 000 00111111100 00
Q ss_pred c-----cCC---CcccccccHHHHHHhh-----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhH
Q 047309 110 L-----EKD---SIWNVGDGINILGSRL-----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLL 173 (218)
Q Consensus 110 ~-----~~~---~~~~~~~~~~~l~~~l-----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~ 173 (218)
. .+. ..-.++.+ ..+.+.+ .++.=++|||+++.+ .....++..+..-.++..+|++|.+. .+.
T Consensus 74 PD~~~i~p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 74 PDLHVIKPEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred CCEEEEecCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 0 000 01111222 2222222 234459999999864 44666776665545666666666654 343
Q ss_pred hh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 174 KT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 174 ~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
.. .++...+.+.+++.+++.+.+.+.
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHc
Confidence 33 355778999999999999998765
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=1.3e-05 Score=57.10 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
..-++|+|++|+||||++..++..+++. |....|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 3568899999999999999999877655 5544443
No 229
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.93 E-value=3.5e-05 Score=60.70 Aligned_cols=158 Identities=17% Similarity=0.109 Sum_probs=81.6
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQ 102 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
+.+.+.-.....+.+.++|...- ...+.++|.|++|+||||++..++......-..++.+....+......
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~-------- 172 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP-------- 172 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS--------
T ss_pred cHhhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc--------
Confidence 33344444444455555555421 234789999999999999999999876555223333333222111000
Q ss_pred HHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceE-EEEeCChhhHhhcCCCce
Q 047309 103 LLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRI-IVTSRDEHLLKTYGMDEI 181 (218)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~i-littr~~~~~~~~~~~~~ 181 (218)
...............+.+...++..+-.|+++++.+.+.+..+... ..|-.+ +.|.+.............
T Consensus 173 -----~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s~~~~i~Rl~~ 243 (270)
T PF00437_consen 173 -----NQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANSAEDAIERLAD 243 (270)
T ss_dssp -----SEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SSHHHHHHHHHH
T ss_pred -----ceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecCCHHHHHHHHHH
Confidence 0000000023445677788888888889999999887776653322 456666 666555433222111000
Q ss_pred eeCCCCChhHHHHHHHHh
Q 047309 182 YKPNELNYHDALQLFNMK 199 (218)
Q Consensus 182 ~~l~~L~~~e~~~l~~~~ 199 (218)
+-. ..+.+.....+...
T Consensus 244 l~~-~~~~~~l~~~l~~~ 260 (270)
T PF00437_consen 244 LGM-EMDPESLRSRLASA 260 (270)
T ss_dssp HCC-TSCHHHHHHHHHHH
T ss_pred Hhc-ccCHHHHHHHHHhH
Confidence 111 16666666655543
No 230
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.92 E-value=2.7e-05 Score=64.74 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=37.3
Q ss_pred ccccccchhHHHHHHhhhc----C---------CCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 25 KKLVGIDSRLEELRSLMNK----G---------PNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~----~---------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...+|.+...+.+...+.. . .....+.++++|++|+|||+||+.++..+...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3579999988887555421 0 00124678999999999999999999866433
No 231
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.92 E-value=1.6e-05 Score=62.55 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+.++++|++|+|||++++.+.+.+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 478899999999999999998876543
No 232
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=9.7e-05 Score=54.87 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=70.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEe---chhhh-ccCchHHHHHHHHHHHHhhccCCCcccccccHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLAD---VREKF-KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINIL 125 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (218)
+.+.++|.||+||||+|+.+++.+++.-..+..+.. ..-.. ...+.+.......... .....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~k-------------s~~rll 68 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLK-------------SVERLL 68 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHH-------------HHHHHH
Confidence 468899999999999999999966544322222111 00000 0111122222222211 011122
Q ss_pred HHhhCCCeEEEEEeCCCChhHhhHHhcCCC-CCCCCceEEEEeCChhhHhhcCCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 126 GSRLQHKKVLLVIDDVVDIKQLEYLAGKRE-WFGSGSRIIVTSRDEHLLKTYGMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 126 ~~~l~~~~~livlD~~~~~~~~~~l~~~~~-~~~~~~~ilittr~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
-..++ .+++|.|+......+..-+.... ..+....||-+--..+.+-+.. .=.-+|..++-..+++.+.-.+.
T Consensus 69 dSalk--n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN---~ergepip~Evl~qly~RfEePn 142 (261)
T COG4088 69 DSALK--NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN---RERGEPIPEEVLRQLYDRFEEPN 142 (261)
T ss_pred HHHhc--ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh---ccCCCCCCHHHHHHHHHhhcCCC
Confidence 23333 77999999976544332222211 1123334555544555555533 23467888888888888775444
No 233
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=9.2e-05 Score=59.96 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=35.1
Q ss_pred ccccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.=....|-++..+-|.+.+-- .....=+-|+++||+|+|||-||++|+.+-.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 334566666666666554411 1112336788999999999999999998654
No 234
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.91 E-value=5.4e-05 Score=61.95 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
..++-++|||+.|+|||.|+-.+++.+...-. .+.++..+ |.++.+.+-... ...+-+..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k-------~R~HFh~F--m~~vh~~l~~~~---------~~~~~l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK-------RRVHFHEF--MLDVHSRLHQLR---------GQDDPLPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc-------ccccccHH--HHHHHHHHHHHh---------CCCccHHHHH
Confidence 45788999999999999999999986543211 11111111 455555554432 1112233444
Q ss_pred HhhCCCeEEEEEeCCC--Chh---HhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 127 SRLQHKKVLLVIDDVV--DIK---QLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 127 ~~l~~~~~livlD~~~--~~~---~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
..+.++..||+||++. +.. -+..++..+- ..|. ++|+|.|.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 4455667799999984 322 2344443332 3455 55555553
No 235
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.91 E-value=7.1e-05 Score=63.09 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=36.7
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
-+..+.+.|...- ....++.|.|++|+|||+|+.+++.........++|+
T Consensus 65 Gi~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYv 114 (446)
T PRK11823 65 GIGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYV 114 (446)
T ss_pred CcHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3555666665432 4567999999999999999999998765444456666
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00028 Score=57.06 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCChh-hHhh-cCCCceeeCCCCChhHHHHHHHHh
Q 047309 131 HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDEH-LLKT-YGMDEIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 131 ~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~ 199 (218)
+..=++|+|+++..+ ....++..+.....+..+|++|.+.. +... .+....+.+.+++.++..+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 334466778887643 23333333332234566777877754 3322 234677899999999999888764
No 237
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.90 E-value=8.8e-05 Score=60.00 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=53.7
Q ss_pred cccccccccchhHHHH---HHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEEL---RSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l---~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.....+||..+..++. .+++.... -.++.+++.|++|+|||+||..+++.+....+++.. ...+.++....-.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i--sgSEiyS~e~kKTE 97 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI--SGSEIYSSEVKKTE 97 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE--EGGGG-BTTC-HHH
T ss_pred eccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc--ccceeeecccCchH
Confidence 3456799998877774 55555533 457999999999999999999999998766554443 34555554443566
Q ss_pred HHHHHHHHH
Q 047309 99 FQRQLLVEI 107 (218)
Q Consensus 99 i~~~~~~~~ 107 (218)
++.+.+++.
T Consensus 98 ~L~qa~Rra 106 (398)
T PF06068_consen 98 ALTQAFRRA 106 (398)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHHh
Confidence 677766643
No 238
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.88 E-value=0.00012 Score=59.70 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE-echhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA-DVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
...++|.|++|+||||++..+...+.......++.. ...+.. ... ...+.... ............++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---------~~~-~~~~i~q~-evg~~~~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---------HRN-KRSLINQR-EVGLDTLSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---------ccC-ccceEEcc-ccCCCCcCHHHHHHH
Confidence 478999999999999999999887654433333321 111100 000 00000000 001112345666777
Q ss_pred hhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
.++..+-+|++|++.+...+...+.. ...|..++.|....
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 88888999999999876665543322 13455555565543
No 239
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.88 E-value=0.0001 Score=57.94 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCc-------cccccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSI-------WNVGDG 121 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~ 121 (218)
...++|.|++|+|||||++.++..+... ...+++. ..... ..+...++. ........... .....
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~-~~d~~~ei~----~~~~~~~q~~~~~r~~v~~~~~k- 182 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVG-IVDERSEIA----GCVNGVPQHDVGIRTDVLDGCPK- 182 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEee-cchhHHHHH----HHhcccccccccccccccccchH-
Confidence 4678999999999999999999865432 2222221 11100 000011221 11111111100 01111
Q ss_pred HHHHHHhh-CCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHh
Q 047309 122 INILGSRL-QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLK 174 (218)
Q Consensus 122 ~~~l~~~l-~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~ 174 (218)
..-+...+ .-.+-++++|+......+..+...+ ..|..+|+|+.+.....
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 11122222 2567899999998777666665543 24678999999765533
No 240
>PRK04132 replication factor C small subunit; Provisional
Probab=97.88 E-value=0.0003 Score=63.22 Aligned_cols=128 Identities=15% Similarity=0.136 Sum_probs=75.4
Q ss_pred EEc--CCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC
Q 047309 54 ICG--MGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ 130 (218)
Q Consensus 54 i~G--~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 130 (218)
+.| |.++||||+|+.+++++.. .+..-+.-.+..... -.+..+++.+.+....+.. .
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~~---------------~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPIG---------------G 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCcC---------------C
Confidence 557 9999999999999997632 222222222333211 1233444443332211110 1
Q ss_pred CCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCChh-hHhh-cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 131 HKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDEH-LLKT-YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 131 ~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+.-++|||+++.+. ....++..+..-...+++|+++.+.. +... .+.+..+.+.+++.++....+...+.
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 234699999999754 45555555443345677777666543 2222 24577899999999999988887654
No 241
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.87 E-value=3.4e-05 Score=52.93 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=38.5
Q ss_pred ccccc----chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 26 KLVGI----DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 26 ~~~gR----~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|. +..++.|..++....+.++-++.++|++|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46664 4666777777777666777788999999999999999999974
No 242
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.87 E-value=8.9e-05 Score=58.07 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
...+++.|.|++|+|||+|+.+++.........++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56789999999999999999998876544456667763
No 243
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.86 E-value=0.00012 Score=53.69 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHHHHhhCCCeEEEEEeCC----CChhHhhHHhcCCCCCCCCceEEEEeCChhhHhhcC
Q 047309 122 INILGSRLQHKKVLLVIDDV----VDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYG 177 (218)
Q Consensus 122 ~~~l~~~l~~~~~livlD~~----~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~ 177 (218)
.-.|-..+-+++-+++=|+- |-...|+-+...-..+..|..|+++|.+..+.+.++
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 33455556688889999964 333344433222122267889999999998877764
No 244
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.86 E-value=2.8e-05 Score=55.72 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.+|+++|.+|+||||||+.+.+++......+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 46899999999999999999999887776555555
No 245
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.86 E-value=0.00028 Score=56.68 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.....++|+|+.|+|||+++.++...
T Consensus 21 ~~~~r~vL~G~~GsGKS~~L~q~~~~ 46 (309)
T PF10236_consen 21 SKNNRYVLTGERGSGKSVLLAQAVHY 46 (309)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55677889999999999987766663
No 246
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.86 E-value=9.8e-05 Score=62.34 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=36.8
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
-+..|.+.|...- ....+++|.|++|+|||||+.+++....+....++|+
T Consensus 79 Gi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYv 128 (454)
T TIGR00416 79 GFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYV 128 (454)
T ss_pred CcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3555666665432 5678999999999999999999988765544456666
No 247
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.85 E-value=0.00015 Score=64.08 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=39.3
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++|.+..+.++.+.+...- .....|+|+|++|+||+++|+.+.+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 34568999999998877776533 334568899999999999999888754
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=7.2e-05 Score=57.89 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh-hhccCchHHHHHHHHHHHHhh------ccCCCccccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE-KFKNKGSVISFQRQLLVEILK------LEKDSIWNVG 119 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~ 119 (218)
.+..++.|+|++|+||||+++.+..-.. ...+.+++....- ...... ..+-..+++..... ..+.....-+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~~~~~-~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKLSKEE-RRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhcchhH-HHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4567999999999999999999988443 3344444421110 000000 22333344443321 1112222333
Q ss_pred ccHHHHHHhhCCCeEEEEEeCCCChhH------hhHHhcCCCCCCCCceEEEEeCChhhHhhc
Q 047309 120 DGINILGSRLQHKKVLLVIDDVVDIKQ------LEYLAGKREWFGSGSRIIVTSRDEHLLKTY 176 (218)
Q Consensus 120 ~~~~~l~~~l~~~~~livlD~~~~~~~------~~~l~~~~~~~~~~~~ilittr~~~~~~~~ 176 (218)
...-.|.+.+.-++-+||.|+.-+.-+ .-.++..+. ...+...++.|.+-.+...+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 444456666677888999999754322 112221111 13456788888886665553
No 249
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00025 Score=57.04 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=40.1
Q ss_pred cccccchhHHHHHHhhhcCC-----------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 26 KLVGIDSRLEELRSLMNKGP-----------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~-----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
..-|-+..++++...+.-+- -...+-|.++||+|+|||-||+.++++....|-.+.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 46667777777766552211 033567889999999999999999998776665443
No 250
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.84 E-value=6e-05 Score=65.42 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+..+++.++|++|.||||||+.++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 66789999999999999999999984
No 251
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=5.4e-06 Score=67.33 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=95.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...+.+.++|++|||||+++-.+.. ....|...++++.+....++ ..+.-.+...+.... .+.+.....+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~----~~g~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHV----QPGDSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhccccc----ccchHHHHHHH
Confidence 3458999999999999999999999 77788888877666665442 222222232222211 11122344455
Q ss_pred HhhCCCeEEEEEeCCCCh-hHhhHHhcCCCCCCCCceEEEEeCChhhHhhcCCCceeeCCCCChh-HHHHHHHHhhcCC-
Q 047309 127 SRLQHKKVLLVIDDVVDI-KQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYGMDEIYKPNELNYH-DALQLFNMKAFKI- 203 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~-~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~~~~~~~l~~L~~~-e~~~l~~~~~~~~- 203 (218)
....+.+.++++||.... .........+...+....++.|+|+.-. ......+.+++|+.. ++.++|..++...
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 555678899999998653 2222222233333455677778886532 233556778888876 6777776655321
Q ss_pred ------CCCCchhHhhhcc
Q 047309 204 ------QKPLEECVQLSEG 216 (218)
Q Consensus 204 ------~~~~~~~~~i~~~ 216 (218)
+...+...+||+.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ 178 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRR 178 (414)
T ss_pred cceeecCCchHHHHHHHHH
Confidence 2345556666654
No 252
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.83 E-value=3.8e-05 Score=64.53 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=40.8
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
-...++||++.++.+...+... ..|+|.|++|+|||+||+.++.....
T Consensus 18 l~~~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 3456999999999998888653 57889999999999999999986543
No 253
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.82 E-value=5.9e-05 Score=64.33 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=40.2
Q ss_pred hhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 32 SRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 32 ~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
.-+..|.++|...- ...++++|.|++|+|||+|+.+++....+....+.|+.
T Consensus 247 tGi~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34556667776543 67789999999999999999999997766666677773
No 254
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00019 Score=61.71 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=85.9
Q ss_pred cccccccccchhHHHHHHhhhcCCC---------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPN---------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~---------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
.+.....|.++..+++.+.+....+ .=++-+.++||+|+|||.||++++.+..-.|. ... ++.|
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf----~iS-GS~F-- 219 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF----SIS-GSDF-- 219 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce----ecc-chhh--
Confidence 3445577887776666555543221 22567899999999999999999986533321 100 0000
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh------------h----HhhHHhcCCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI------------K----QLEYLAGKREW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~------------~----~~~~l~~~~~~ 156 (218)
. .. ...-...++.+.+.+..++.+++|+||+++.. + .+..++.....
T Consensus 220 ----V-------em------fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 220 ----V-------EM------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ----h-------hh------hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 0 00 01122234456666666778999999988631 1 23344433332
Q ss_pred CCC-CceEEE--EeCChhhHhh----cCCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 157 FGS-GSRIIV--TSRDEHLLKT----YGMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 157 ~~~-~~~ili--ttr~~~~~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
... ..-|++ |.|.+-+... .+-+..+.++.-+-....+.++-|+.+.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC
Confidence 222 233444 3443212111 1224556777777677778887665443
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00016 Score=59.82 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++++.|++|+||||++..++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998754
No 256
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.82 E-value=0.0003 Score=55.49 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.+++.++|++|+||||++..++..+.+....+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3467888999999999999999998775553344444
No 257
>PRK13695 putative NTPase; Provisional
Probab=97.80 E-value=0.00013 Score=53.54 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
-++|+|++|+|||||+..++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887654
No 258
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.79 E-value=0.00021 Score=52.41 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++.+.|++|+||||++..++..+.+....+.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 577999999999999999998765553334444
No 259
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.79 E-value=0.00025 Score=67.79 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..++-|+++||+|+|||.||+++|.+..-
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 34578889999999999999999986543
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.79 E-value=0.00027 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|.|++|+||||+++.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999865
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.79 E-value=1.4e-05 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhhccc
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
|+|+|++|+|||+||+.++..+.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876544
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=0.00023 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|+.|.|||||++.++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 445789999999999999999998854
No 263
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.78 E-value=0.00019 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+++|.|.+|+||||+++.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 264
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.77 E-value=3.2e-05 Score=66.11 Aligned_cols=60 Identities=27% Similarity=0.422 Sum_probs=44.0
Q ss_pred cccccccccchhHHHHHHhhhcC--CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG--PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~--~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.....+.--.+.++++.+||... .....++++++||+|+||||.++.+++.+ .+...-|.
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 34445666677899999999762 22345799999999999999999999865 33444453
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.77 E-value=6.8e-05 Score=55.53 Aligned_cols=32 Identities=22% Similarity=0.099 Sum_probs=26.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++|.|++|+|||+|+.+++....+....+.|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67999999999999999988665555667777
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.77 E-value=0.00056 Score=53.71 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=37.7
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
++-.+..+..++.++.+.++-++.++|.+|+||+.+++.+++....
T Consensus 91 ~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~ 136 (344)
T KOG2170|consen 91 KQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYR 136 (344)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHh
Confidence 4556667778888877777788999999999999999999986533
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00087 Score=56.21 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc--ccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS--HEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~--~~~~~~~~~ 83 (218)
.+++.+.|++|+||||++..++..+. +....+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56899999999999999998887664 333344444
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.76 E-value=0.00018 Score=53.13 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=26.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+...++|.|+.|.|||||++.++.... .....+++
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~ 58 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILL 58 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEE
Confidence 3456899999999999999999887543 23344444
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.76 E-value=0.00019 Score=56.90 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..+++.++|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999986643
No 270
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=9e-05 Score=57.25 Aligned_cols=53 Identities=25% Similarity=0.262 Sum_probs=38.7
Q ss_pred cccccccchhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+..-|=.++++.|++.++.+- -+.++-|+++||+|+|||-+|++|+++-...
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 3445667788888887764411 1446778899999999999999999865433
No 271
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.75 E-value=7.8e-05 Score=54.61 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=28.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVRE 88 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~ 88 (218)
..+.+.||+|+|||.||+.+++.+. ......+.+ ++..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~ 42 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSE 42 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhc
Confidence 5788999999999999999999776 343333333 4444
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.0005 Score=56.36 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+..+++++|++|+||||++.+++....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467999999999999999999998753
No 273
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00025 Score=53.98 Aligned_cols=25 Identities=36% Similarity=0.617 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.++-.+.|.|++|+|||||++.++.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4556899999999999999999986
No 274
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.74 E-value=0.00038 Score=57.00 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc--ccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS--HEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINIL 125 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (218)
+.+++.++||+|+||||-+.+++.++. ..-..+.++. .+++..-..-+-..+..+.+.+-....++.++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 479999999999999996655666543 2223333331 111111223333444455554444444555555544
Q ss_pred HHhhCCCeEEEEEeCCC
Q 047309 126 GSRLQHKKVLLVIDDVV 142 (218)
Q Consensus 126 ~~~l~~~~~livlD~~~ 142 (218)
...- ..-+|++|-+.
T Consensus 277 ~~l~--~~d~ILVDTaG 291 (407)
T COG1419 277 EALR--DCDVILVDTAG 291 (407)
T ss_pred HHhh--cCCEEEEeCCC
Confidence 4432 22477888774
No 275
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.74 E-value=0.00012 Score=60.86 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=37.6
Q ss_pred cccccccchhHHHHHHhhh-------c--CCC------CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMN-------K--GPN------DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~-------~--~~~------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
....+|.+...+.+...+. . ... ...+.++++||+|+|||++|+.++..+.-.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 3447899988888865551 1 000 113579999999999999999999866433
No 276
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.73 E-value=4.8e-05 Score=55.97 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++.++++.|++|+||||+++.++..+...+....++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3456899999999999999999999886665555555
No 277
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.73 E-value=6.4e-05 Score=60.38 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh--cc----cccceEEEEechhhhc
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI--SH----EFEGSSFLADVREKFK 91 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~--~~----~~~~~~~~~~~~~~~~ 91 (218)
...|-++|...- +..++.-|+|++|+|||+|+.+++-.. .. .-..++|+ +....+.
T Consensus 82 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYI-dtE~~f~ 143 (313)
T TIGR02238 82 SQALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYI-DTEGTFR 143 (313)
T ss_pred CHHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEE-EcCCCCC
Confidence 344555565433 567889999999999999998877532 21 12345666 5555443
No 278
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.72 E-value=0.00019 Score=52.28 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc-CCC----ccc------
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE-KDS----IWN------ 117 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~----~~~------ 117 (218)
.+.+.|++..|.||||.|..++-+...+.-.+.++..+..... .. -..+++.+ .+.... ... ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~-~G-E~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWP-NG-ERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcc-cC-hHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 3577788889999999998888876555444443322322211 11 11222221 110000 000 001
Q ss_pred -ccccHHHHHHhhC-CCeEEEEEeCCCC-----hhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 118 -VGDGINILGSRLQ-HKKVLLVIDDVVD-----IKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 118 -~~~~~~~l~~~l~-~~~~livlD~~~~-----~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
.....+..++.+. +.--++|||++-. .-+.+.+...+.....+..+|+|.|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1112233344443 4456999999842 222233333333335567999999986
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00029 Score=57.63 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...+++.++|+.|+||||++..++..+......+.++. ... + ... ...-++.....+. .+.....++.++...+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt-aDt-y-R~g-AveQLk~yae~lg-vpv~~~~dp~dL~~al~ 278 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT-TDT-F-RSG-AVEQFQGYADKLD-VELIVATSPAELEEAVQ 278 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe-CCc-c-Ccc-HHHHHHHHhhcCC-CCEEecCCHHHHHHHHH
Confidence 45689999999999999999999886644433444442 211 1 111 2222233332221 11111234444544444
Q ss_pred HhhC-CCeEEEEEeCCC
Q 047309 127 SRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 127 ~~l~-~~~~livlD~~~ 142 (218)
.... +..-+|++|-..
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 4331 334688888874
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00056 Score=56.50 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+++++++|++|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988654
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.71 E-value=0.00032 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....+.|.|+.|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445689999999999999999998754
No 282
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.71 E-value=0.00015 Score=59.94 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=40.3
Q ss_pred cccccccchhHHHHHHhhhcC-----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
...++|.++..+.+.-.+... .+..++.++++|++|+|||++|+.++..+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 456899998888886555431 112346789999999999999999999765544
No 283
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00047 Score=60.00 Aligned_cols=129 Identities=18% Similarity=0.158 Sum_probs=69.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR 128 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (218)
..-++++|++|+|||.||-+++....-+ |+ .+.. .+++..... .+.+.+.+.+.+.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-----fi-svKG--------PElL~KyIG----------aSEq~vR~lF~rA 756 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-----FI-SVKG--------PELLSKYIG----------ASEQNVRDLFERA 756 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-----EE-EecC--------HHHHHHHhc----------ccHHHHHHHHHHh
Confidence 3458899999999999999999854222 22 2211 122222221 1122345555555
Q ss_pred hCCCeEEEEEeCCCChhH-------------hhHHhcCCC--CCCCCceEEE-EeCChhhHhh---cCC-CceeeCCCCC
Q 047309 129 LQHKKVLLVIDDVVDIKQ-------------LEYLAGKRE--WFGSGSRIIV-TSRDEHLLKT---YGM-DEIYKPNELN 188 (218)
Q Consensus 129 l~~~~~livlD~~~~~~~-------------~~~l~~~~~--~~~~~~~ili-ttr~~~~~~~---~~~-~~~~~l~~L~ 188 (218)
-..++++++||++++... +..++..+. ..-.|..|+- |||.+-+... -+. ++-+.-+.=+
T Consensus 757 ~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~ 836 (952)
T KOG0735|consen 757 QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPD 836 (952)
T ss_pred hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCC
Confidence 567899999999976422 344544432 1123444443 6665432111 122 3444444555
Q ss_pred hhHHHHHHHHhhc
Q 047309 189 YHDALQLFNMKAF 201 (218)
Q Consensus 189 ~~e~~~l~~~~~~ 201 (218)
+.+..+.++....
T Consensus 837 ~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 837 EPERLEILQVLSN 849 (952)
T ss_pred cHHHHHHHHHHhh
Confidence 6677777776543
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.71 E-value=0.00019 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~ 70 (218)
.....++|.|+.|+|||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 445789999999999999999885
No 285
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.71 E-value=0.00015 Score=58.53 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEEechhhh
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLADVREKF 90 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~~~~~~~ 90 (218)
...+.++|...- ....++.|+|++|+|||+|+.+++....... ..++|+ +....+
T Consensus 88 ~~~lD~~l~GGi-~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi-~te~~f 148 (317)
T PRK04301 88 SKELDELLGGGI-ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI-DTEGTF 148 (317)
T ss_pred CHHHHHHhcCCc-cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE-eCCCCc
Confidence 344555554422 5678899999999999999999987543221 245566 454433
No 286
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.70 E-value=3.5e-05 Score=53.32 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|+|.|++|+||||+|+.+.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999874
No 287
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.70 E-value=0.00019 Score=57.74 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=28.3
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHH
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~ 70 (218)
|+.+-.--.++|.+ ++...|.+.|.+|+|||.||.+..
T Consensus 229 rn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 229 RNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred ccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHH
Confidence 55555444555555 678999999999999999986544
No 288
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00017 Score=56.76 Aligned_cols=90 Identities=22% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHH-HhhccCCCccccc---ccH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVE-ILKLEKDSIWNVG---DGI 122 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~---~~~ 122 (218)
+..+++=|+|+.|+|||+++.+++-..+.....++|+. ....++ . .-+.++... +.........+.. .++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-tE~~l~----p-~r~~~l~~~~~d~l~v~~~~~~e~q~~i~ 131 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-TEHALD----P-ERAKQLGVDLLDNLLVSQPDTGEQQLEIA 131 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe-CCCCCC----H-HHHHHHHHhhhcceeEecCCCHHHHHHHH
Confidence 77889999999999999999999887777777788884 333332 1 222333333 2222222222333 333
Q ss_pred HHHHHhhCCCeEEEEEeCCC
Q 047309 123 NILGSRLQHKKVLLVIDDVV 142 (218)
Q Consensus 123 ~~l~~~l~~~~~livlD~~~ 142 (218)
..+......+--|+|+|.+-
T Consensus 132 ~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHhccCCCCEEEEecCc
Confidence 33333333335699999883
No 289
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.69 E-value=0.00011 Score=54.44 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc-CCC----cccc----
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE-KDS----IWNV---- 118 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~----~~~~---- 118 (218)
+...+.|+|.+|.||||.|..++-+...+...+.++..+...... + -..+++.+- .+.... ... ..+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~-G-E~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWST-G-ERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCcc-C-HHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 346888999999999999998888765555445444333332111 1 112222110 000000 000 0011
Q ss_pred ---cccHHHHHHhhC-CCeEEEEEeCCCC-----hhHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 119 ---GDGINILGSRLQ-HKKVLLVIDDVVD-----IKQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 119 ---~~~~~~l~~~l~-~~~~livlD~~~~-----~~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
.......++.+. +.--++|||++-. .-+.+.+...+.....+..||+|.|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233344443 4556999999842 2222333333333355679999999863
No 290
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.69 E-value=0.00024 Score=57.02 Aligned_cols=83 Identities=22% Similarity=0.145 Sum_probs=54.0
Q ss_pred cccccccccchhHHH---HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGIDSRLEE---LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~---l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.....|||..+..++ +.+++.... -.++.+++.||+|+|||+||..+++.+...-+++.. +.++.++......+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk-~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i--sgsEiYS~E~kKTE 112 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGK-MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI--SGSEIYSLEVKKTE 112 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCc-ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee--ccceeeeecccHHH
Confidence 344569998777666 456665543 667899999999999999999999988765444332 22333332222445
Q ss_pred HHHHHHHHH
Q 047309 99 FQRQLLVEI 107 (218)
Q Consensus 99 i~~~~~~~~ 107 (218)
.+.+.++..
T Consensus 113 ~L~qa~Rra 121 (450)
T COG1224 113 ALTQALRRA 121 (450)
T ss_pred HHHHHHHHh
Confidence 555555543
No 291
>PRK07667 uridine kinase; Provisional
Probab=97.68 E-value=0.00014 Score=54.35 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+.|.+.+..-. .+..+|+|.|.+|+||||+++.+...+...
T Consensus 4 ~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34445554433 445789999999999999999999876543
No 292
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.68 E-value=0.00029 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+.++|+|+.|.|||||++.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999884
No 293
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00022 Score=61.30 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=93.4
Q ss_pred cccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCch
Q 047309 26 KLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
.+-|-...+..+..++.. .....++.+.++|++|+|||-++++|+++.. ..++..+..+.
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pel------ 254 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPEL------ 254 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHH------
Confidence 344555556666555532 1115567899999999999999999998654 22223233321
Q ss_pred HHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCC-eEEEEEeCCCChhH------------hhHHhcCCCCCCCCc-
Q 047309 96 VISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHK-KVLLVIDDVVDIKQ------------LEYLAGKREWFGSGS- 161 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~livlD~~~~~~~------------~~~l~~~~~~~~~~~- 161 (218)
...+ ...+...+...+.+....+ +.+|.+|+++.... ...+...+...++..
T Consensus 255 ----i~k~----------~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~ 320 (693)
T KOG0730|consen 255 ----ISKF----------PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAK 320 (693)
T ss_pred ----HHhc----------ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCc
Confidence 1111 1122233455555666666 88999999864321 122222222223333
Q ss_pred eEEE-EeCChhh----HhhcCCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhccc
Q 047309 162 RIIV-TSRDEHL----LKTYGMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSEGV 217 (218)
Q Consensus 162 ~ili-ttr~~~~----~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~~i 217 (218)
.|++ +|+..+. ..+.+.+..+++.--+..+..++++.+...-.. ++..++.+|..-
T Consensus 321 vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~t 382 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVST 382 (693)
T ss_pred EEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHc
Confidence 3334 4444322 222233566888888888888888887654433 346666666543
No 294
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.67 E-value=0.0003 Score=53.49 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred cccHHHHHHhhCCCeEEEEEeCC----CCh--hHhhHHhcCCCCCCCCceEEEEeCChhhHhhcC
Q 047309 119 GDGINILGSRLQHKKVLLVIDDV----VDI--KQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYG 177 (218)
Q Consensus 119 ~~~~~~l~~~l~~~~~livlD~~----~~~--~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~ 177 (218)
+...-.+-+.+-.++-+|+-|+- |.. ..+-.++..+. ...+..+|+.|.+..++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC
Confidence 33444566666777889999975 322 22333333222 134678999999999888754
No 295
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.67 E-value=0.00025 Score=58.16 Aligned_cols=35 Identities=34% Similarity=0.334 Sum_probs=28.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh--cccccceEEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI--SHEFEGSSFLA 84 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~--~~~~~~~~~~~ 84 (218)
.+++|.|.||+|||.||..++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999987 55555555553
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.67 E-value=9.4e-05 Score=60.01 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=34.6
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc--cc----ccceEEEEechhhhc
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS--HE----FEGSSFLADVREKFK 91 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~--~~----~~~~~~~~~~~~~~~ 91 (218)
.|-++|...- +..++.-|+|++|+|||+|+.+++-..+ .. -..++|+ +....+.
T Consensus 114 ~LD~lLgGGi-~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyI-dTE~tF~ 173 (344)
T PLN03187 114 ALDELLGGGI-ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYI-DTEGTFR 173 (344)
T ss_pred hHHhhcCCCC-CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEE-EcCCCCC
Confidence 3445554332 5678888999999999999998875322 11 1345566 5555443
No 297
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.67 E-value=6e-05 Score=55.01 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcc
Q 047309 52 IGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
++|+|++|+|||||++.+++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999997754
No 298
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=4.4e-05 Score=55.72 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
-|+|.|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 299
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.67 E-value=0.00011 Score=58.91 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=41.2
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
..|...+.|+-.......+..++.. .+.++|.|++|+|||++++.++..+...+
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3344455677777777778777754 35799999999999999999999876443
No 300
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.65 E-value=7.7e-05 Score=55.45 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccC-CCcccccccHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEK-DSIWNVGDGINILGS 127 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 127 (218)
...++|.|++|+||||+++.++..+... ...+.+....+...... ... ++..... ..........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP-------NWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC-------CEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998865433 22222322111110000 000 0000000 001112345566667
Q ss_pred hhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCce-EEEEeCCh
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSR-IIVTSRDE 170 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~-ilittr~~ 170 (218)
.++..+-.++++++.+.+.+..+... ..|-. ++.|..-.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~a~----~tGh~g~~~T~Ha~ 135 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQAM----NTGHPGGMTTIHAN 135 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHHHH----hcCCCCceeeecCC
Confidence 77777889999999887665543322 33444 55554433
No 301
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.65 E-value=0.00023 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....+.|.|+.|+|||||++.++...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345689999999999999999888744
No 302
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.64 E-value=0.0001 Score=57.58 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=33.9
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc--c---c-ccceEEEEechhhhc
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS--H---E-FEGSSFLADVREKFK 91 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~--~---~-~~~~~~~~~~~~~~~ 91 (218)
.|-++|...- ....+.=|+|++|+|||.|+.+++-... . . -..++|+ +....++
T Consensus 26 ~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyi-dTe~~f~ 85 (256)
T PF08423_consen 26 SLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYI-DTEGTFS 85 (256)
T ss_dssp HHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEE-ESSSSS-
T ss_pred HHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEE-eCCCCCC
Confidence 4555554422 4557888999999999999988875432 1 1 1235555 5555554
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.64 E-value=0.00067 Score=53.43 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
....+++|.|++|+|||+++.+++...... ...++|+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 445688999999999999999998865443 4556666
No 304
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.63 E-value=0.00014 Score=53.16 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=45.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc--cCCCcccccccHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL--EKDSIWNVGDGINILGS 127 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 127 (218)
+.++|.|++|+|||++|..++.+... ...|+ .....+ -.+..+++..+.... .....+.+.++...+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~---~~~~i-at~~~~-----~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL---QVLYI-ATAQPF-----DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC---CcEeC-cCCCCC-----hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHh
Confidence 36889999999999999999876432 23333 222221 223334443332222 12222334456666655
Q ss_pred hhCCCeEEEEEeCC
Q 047309 128 RLQHKKVLLVIDDV 141 (218)
Q Consensus 128 ~l~~~~~livlD~~ 141 (218)
...+ .-++++|.+
T Consensus 73 ~~~~-~~~VlID~L 85 (170)
T PRK05800 73 DAAP-GRCVLVDCL 85 (170)
T ss_pred hcCC-CCEEEehhH
Confidence 4433 337889987
No 305
>PTZ00035 Rad51 protein; Provisional
Probab=97.63 E-value=0.00027 Score=57.45 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...|-++|...- +...++.|+|++|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGI-ETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCC-CCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 445556665433 567899999999999999999887643
No 306
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.63 E-value=0.00029 Score=56.71 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=35.9
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc------ccceEEEEechhhh
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE------FEGSSFLADVREKF 90 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~------~~~~~~~~~~~~~~ 90 (218)
..+..+|...- ....++.|+|++|+|||+|+.+++...... -..++|+ +..+.+
T Consensus 82 ~~lD~~l~GGi-~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi-~te~~f 141 (310)
T TIGR02236 82 KELDELLGGGI-ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI-DTENTF 141 (310)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE-ECCCCC
Confidence 34555555432 557889999999999999999998764321 1245666 555544
No 307
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.63 E-value=0.00011 Score=51.38 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=29.1
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..++.+.+...- ....++++.|+.|+|||||++.+++.+
T Consensus 7 ~t~~l~~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4444544444321 345689999999999999999999965
No 308
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.63 E-value=0.00043 Score=53.51 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLA 84 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~ 84 (218)
..+.+++|.|++|+|||+++.+++...... ...+.|+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 456789999999999999999988765443 45566663
No 309
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.62 E-value=0.00012 Score=59.05 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=44.2
Q ss_pred cccccccchhHHHHHHhhhc---CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMNK---GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~---~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...|+|-++.+.++.+++.. ..+.+.+++++.||.|.|||+|++.+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 34799999999999998855 233778999999999999999999888866544
No 310
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.61 E-value=0.0004 Score=59.17 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=58.2
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL 110 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (218)
++.++.+.+++.. ..+.++|+|+.|+||||++..+.+.+......++.+.+--+.. +.. + .+ .
T Consensus 228 ~~~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~-----~~~----~-~q---~ 290 (486)
T TIGR02533 228 PELLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ-----IEG----I-GQ---I 290 (486)
T ss_pred HHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee-----cCC----C-ce---E
Confidence 3445555665543 3468999999999999999988876644323333332211110 000 0 00 0
Q ss_pred cCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhH
Q 047309 111 EKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEY 149 (218)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~ 149 (218)
. ............++..++..+-+|++.++.+.+....
T Consensus 291 ~-v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~ 328 (486)
T TIGR02533 291 Q-VNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQI 328 (486)
T ss_pred E-EccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 0 0000012345677788888888999999988765443
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.61 E-value=0.00025 Score=51.71 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|+.|.|||||++.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.61 E-value=5.7e-05 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++++.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999999987543
No 313
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.61 E-value=0.00019 Score=65.14 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc----ccceEEEEechhhhccCchHH-HHHHHHHHHHhhccCCCcccccccHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE----FEGSSFLADVREKFKNKGSVI-SFQRQLLVEILKLEKDSIWNVGDGIN 123 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 123 (218)
..-+.|.|.+|.||||++..++-..... -....++.............. .+...+...+. ..........
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELF-----SQGIAKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHh-----ccCCcchhhH
Confidence 3478899999999999999888744222 123333322111111100011 11111221111 1122222333
Q ss_pred HHHHhhCCCeEEEEEeCCCChhH---------hhHHhcCCCCCCCCceEEEEeCChhhHhhcCCCceeeCCCCChhHHHH
Q 047309 124 ILGSRLQHKKVLLVIDDVVDIKQ---------LEYLAGKREWFGSGSRIIVTSRDEHLLKTYGMDEIYKPNELNYHDALQ 194 (218)
Q Consensus 124 ~l~~~l~~~~~livlD~~~~~~~---------~~~l~~~~~~~~~~~~ilittr~~~~~~~~~~~~~~~l~~L~~~e~~~ 194 (218)
.+..++...++++++|+++.... +..+.+. .+.+.+|+|+|.............+++..+.++....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~ 372 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQ 372 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHH
Confidence 33567788999999999976322 2333333 4577899999877655554445667788888777765
Q ss_pred HHH
Q 047309 195 LFN 197 (218)
Q Consensus 195 l~~ 197 (218)
.+.
T Consensus 373 ~~~ 375 (824)
T COG5635 373 FIL 375 (824)
T ss_pred HHH
Confidence 555
No 314
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.60 E-value=5.2e-05 Score=52.25 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccce
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGS 80 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~ 80 (218)
|+|+|.+|+|||++|+.+++.+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999877666543
No 315
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.59 E-value=9.6e-05 Score=54.76 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++++|+||+|+|||+|++.+++.....|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999887777655544
No 316
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.59 E-value=0.00037 Score=53.18 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=24.4
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+...+.. ..+.+|+||+|+|||+++..++..+
T Consensus 6 Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34555555543 2368999999999998887777765
No 317
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.58 E-value=0.00041 Score=59.71 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=37.5
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
..-+..|.+.+...- ...+.++|.|++|+|||+|+.+++...... ...+.|+
T Consensus 14 ~TGI~~LD~~l~GG~-p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyi 66 (509)
T PRK09302 14 PTGIEGFDDITHGGL-PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFV 66 (509)
T ss_pred cCCchhHHHhhcCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 344555666665432 567899999999999999999988754434 5566777
No 318
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.57 E-value=0.00032 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....+.|.|+.|.|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999988754
No 319
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.57 E-value=0.00038 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..++++|+|+.|.||||+++.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998875
No 320
>PHA02244 ATPase-like protein
Probab=97.57 E-value=8.4e-05 Score=60.42 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=35.3
Q ss_pred cccccccccchhHHHH----HHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 22 ETLKKLVGIDSRLEEL----RSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l----~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.....|+|+...+... .+++.. ...|+|+|++|+|||+||+.++..+...
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~-----~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNA-----NIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445577876666543 444433 3568899999999999999999875433
No 321
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.57 E-value=0.00076 Score=60.51 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
++++|.|.+|+||||+++.+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 688999999999999999998766544
No 322
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0011 Score=54.94 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+..+-+++.||+|.|||.|++.++.+....
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 456778899999999999999999876443
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=97.57 E-value=0.00069 Score=56.74 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+.++.++|++|+||||.+..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999998888866554
No 324
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00039 Score=56.93 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...+-+.++||||+|||-+|+.++...
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~S 408 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHS 408 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhc
Confidence 445779999999999999999999853
No 325
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.57 E-value=8.5e-05 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++++++|++|+||||+|+.+.+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998754
No 326
>PRK06762 hypothetical protein; Provisional
Probab=97.57 E-value=8.3e-05 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++++|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 327
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=6.7e-05 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|+|++|+||||||+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 328
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0012 Score=59.33 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=64.4
Q ss_pred cccccccchhHHHHHHhhhcCCC---C--CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPN---D--DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~---~--~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.+..+|.++.+..|...+..... . ...-+.+.||.|+|||.||+.++..+.......+-+ ++++ ..+
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri-Dmse-------~~e 632 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL-DMSE-------FQE 632 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe-chhh-------hhh
Confidence 44578899999999888855211 1 345678899999999999999999775554444434 3333 111
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeE-EEEEeCCCCh
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKV-LLVIDDVVDI 144 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-livlD~~~~~ 144 (218)
...+.+.++ ..-.......|-+.++.+++ +|+|||++..
T Consensus 633 -----vskligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -----VSKLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -----hhhccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222211111 01111234456666666665 7789999753
No 329
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.56 E-value=0.00014 Score=63.59 Aligned_cols=63 Identities=17% Similarity=0.384 Sum_probs=49.4
Q ss_pred CccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEe
Q 047309 18 PLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLAD 85 (218)
Q Consensus 18 ~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~ 85 (218)
..++..-+.++|.+..++.|...+... +.++++|++|+|||++++.+++.+... +....|+.+
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 444566677999999999998888653 478899999999999999999876433 366667665
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.55 E-value=0.00074 Score=54.00 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=52.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
+.++|.|++|+||||+++.+++.+... ...++.+....+...... + ..... ...........++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~-------~----~v~~~--~~~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAP-------N----VVQLR--TSDDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCC-------C----EEEEE--ecCCCCCHHHHHHH
Confidence 567899999999999999999876442 122333333222110000 0 00000 00112256677888
Q ss_pred hhCCCeEEEEEeCCCChhHhhHH
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYL 150 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l 150 (218)
.++-.+-.|++.++...+.+..+
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHH
Confidence 88888889999999887765543
No 331
>PRK08233 hypothetical protein; Provisional
Probab=97.55 E-value=8.9e-05 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 332
>PF13245 AAA_19: Part of AAA domain
Probab=97.55 E-value=0.00024 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+.++|.|++|+|||+++...+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6788899999999965544444
No 333
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.55 E-value=0.00027 Score=58.19 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++..++|.|++|+|||+|.+.+.+.++.....+..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 4567889999999999999999998776644444433
No 334
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.54 E-value=0.00011 Score=53.37 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
.....+.|.|+.|+|||||++.++.... .....+++.. .... ... ...... ..+.-.. ..+......-.+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g-~~~~-~~~-~~~~~~---~~i~~~~--qLS~G~~qrl~la 94 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDG-KEVS-FAS-PRDARR---AGIAMVY--QLSVGERQMVEIA 94 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-EECC-cCC-HHHHHh---cCeEEEE--ecCHHHHHHHHHH
Confidence 3456899999999999999999887543 2333344421 1110 000 111000 0000000 0111112222344
Q ss_pred HhhCCCeEEEEEeCCCC---h---hHhhHHhcCCCCCCCCceEEEEeCChhhHh
Q 047309 127 SRLQHKKVLLVIDDVVD---I---KQLEYLAGKREWFGSGSRIIVTSRDEHLLK 174 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~---~---~~~~~l~~~~~~~~~~~~ilittr~~~~~~ 174 (218)
..+-.++-++++|+-.. . ..+..++..+. ..+..+|++|++.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHH
Confidence 44455677999999743 1 12222222221 23667888998876443
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.0005 Score=50.41 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|+.|.|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999988754
No 336
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.54 E-value=0.00032 Score=54.15 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..++.+.+.... ....++.|+|+||.|||||+..+...+.+....+..+
T Consensus 15 ~~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl 63 (266)
T PF03308_consen 15 ARELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL 63 (266)
T ss_dssp HHHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 334444444322 4567999999999999999999999776654444433
No 337
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.54 E-value=9.9e-05 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|+|++|+||||+++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999976
No 338
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.53 E-value=0.00017 Score=55.43 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
....+++|.|++|+|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 556799999999999999999999876544
No 339
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.53 E-value=0.0002 Score=62.63 Aligned_cols=64 Identities=20% Similarity=0.423 Sum_probs=48.0
Q ss_pred CccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEec
Q 047309 18 PLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLADV 86 (218)
Q Consensus 18 ~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~~ 86 (218)
+.+......++|.+...+.+...+... +.++++|++|+|||++++.+++.+... |...+++.+.
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~-----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK-----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 445566777999999998888888653 477799999999999999999977554 3334444443
No 340
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.52 E-value=0.00025 Score=55.80 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=23.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.|+|+|.||+||||+|+.+...+...-..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4789999999999999999999765543333333
No 341
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.51 E-value=0.00034 Score=57.95 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=40.4
Q ss_pred cccccccchhHHHHHHhhhcC-----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
...++|.+...+.+..++... .+..++.++++|++|+|||+||+.+++.+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 455899999999887777430 001246789999999999999999999764443
No 342
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.51 E-value=0.0001 Score=45.44 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999876
No 343
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.51 E-value=0.00098 Score=56.60 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=36.3
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.+..+.++.+.+.... .....+.|.|++|+||+++|+.+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-RSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-CcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 358888888888777665432 334578899999999999999887754
No 344
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.51 E-value=0.00011 Score=55.07 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+|.|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999977644
No 345
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.51 E-value=0.00072 Score=55.40 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccccc---ceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFE---GSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINI 124 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (218)
..+.++|+|++|+||||++..++..+..... .++.+.+.-+ +. ....... . ....+. ............
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~----~~~~~~~-~-~~v~Q~-~v~~~~~~~~~~ 204 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FV----YDEIETI-S-ASVCQS-EIPRHLNNFAAG 204 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Ee----ccccccc-c-ceeeee-eccccccCHHHH
Confidence 3579999999999999999999886643322 2222211111 10 0000000 0 000000 001112334566
Q ss_pred HHHhhCCCeEEEEEeCCCChhHhhHH
Q 047309 125 LGSRLQHKKVLLVIDDVVDIKQLEYL 150 (218)
Q Consensus 125 l~~~l~~~~~livlD~~~~~~~~~~l 150 (218)
++..++..+..+++.++.+.......
T Consensus 205 l~~aLR~~Pd~i~vGEiRd~et~~~a 230 (358)
T TIGR02524 205 VRNALRRKPHAILVGEARDAETISAA 230 (358)
T ss_pred HHHHhccCCCEEeeeeeCCHHHHHHH
Confidence 77777788889999999877665433
No 346
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.51 E-value=0.00026 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
-++|.|++|+||||+++.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999865
No 347
>PRK14528 adenylate kinase; Provisional
Probab=97.50 E-value=0.00058 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.++|.|++|+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 348
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00088 Score=51.79 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=33.8
Q ss_pred cHHHHHHhhCCCeEEEEEeCC----CC--hhHhhHHhcCCCCCCCCceEEEEeCChhhHhh
Q 047309 121 GINILGSRLQHKKVLLVIDDV----VD--IKQLEYLAGKREWFGSGSRIIVTSRDEHLLKT 175 (218)
Q Consensus 121 ~~~~l~~~l~~~~~livlD~~----~~--~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~ 175 (218)
..-.+-+.|-.++-|+++|+- |. ...+..++..+. ..|+.|+++|.+-.....
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 344456666778889999985 32 233445554444 338899999998754333
No 349
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.50 E-value=0.00021 Score=51.13 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=18.4
Q ss_pred EEcCCCccHHHHHHHHHHhh
Q 047309 54 ICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 54 i~G~~GiGKT~La~~v~~~~ 73 (218)
|.|+||+||||+++.+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999865
No 350
>PRK04040 adenylate kinase; Provisional
Probab=97.50 E-value=0.00013 Score=54.35 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=22.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|+|.+|+||||+++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999774
No 351
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.49 E-value=0.00094 Score=46.24 Aligned_cols=33 Identities=18% Similarity=-0.022 Sum_probs=23.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcc--cccceEEE
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISH--EFEGSSFL 83 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~--~~~~~~~~ 83 (218)
.++|.|++|+|||+.+..++.+... ....++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 4679999999999999888876543 23444444
No 352
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.49 E-value=0.00073 Score=50.03 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..+.+++|.|.+|+||||+++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999987643
No 353
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.49 E-value=0.0002 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=30.6
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...+++|..++.. +++++.|++|+|||||+..+...
T Consensus 23 ~~g~~~l~~~l~~------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC------CEEEEECCCCCCHHHHHHHHHhh
Confidence 4567888888865 68999999999999999998874
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.48 E-value=0.00014 Score=55.00 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+.+.+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5568999999999999999999998654
No 355
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.48 E-value=0.00062 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.48 E-value=0.00013 Score=55.15 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+..+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 357
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0002 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|.|++|.||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999974
No 358
>COG4240 Predicted kinase [General function prediction only]
Probab=97.48 E-value=0.0006 Score=51.51 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=26.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
.++-+++|+|+-|+||||++..+...+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 4566899999999999999999988766555
No 359
>PRK10436 hypothetical protein; Provisional
Probab=97.47 E-value=0.00098 Score=56.37 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=56.7
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL 110 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (218)
+..++.+.+++.. ..+.++|+|+.|.||||.+..+..........++-+ ....... +. .+ .+ .
T Consensus 204 ~~~~~~l~~~~~~----~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti---EDPvE~~--l~----gi-~Q---~ 266 (462)
T PRK10436 204 PAQLAQFRQALQQ----PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV---EDPVEIP--LA----GI-NQ---T 266 (462)
T ss_pred HHHHHHHHHHHHh----cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe---cCCcccc--CC----Cc-ce---E
Confidence 3445556666643 347999999999999998887777654332222222 2211100 00 00 00 0
Q ss_pred cCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhh
Q 047309 111 EKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLE 148 (218)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~ 148 (218)
.............++..++..+-+|++.++.+.+...
T Consensus 267 -~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~ 303 (462)
T PRK10436 267 -QIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAE 303 (462)
T ss_pred -eeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHH
Confidence 0001111245667788888888899999998766544
No 360
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0012 Score=49.62 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=29.8
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHH
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+.|+|-...++.+.=-+ .+..+..+.||+|+|||||++.+-+
T Consensus 13 l~~yYg~~~aL~~i~l~i-----~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 13 LNLYYGDKHALKDINLDI-----PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeEEECchhhhccCceec-----cCCceEEEECCCCcCHHHHHHHHHh
Confidence 345777554444433212 4567999999999999999996654
No 361
>PRK06547 hypothetical protein; Provisional
Probab=97.47 E-value=0.00024 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....+|.|.|++|+||||+++.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 556889999999999999999999864
No 362
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0016 Score=54.84 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=65.2
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL 110 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (218)
......+.+++.. ..+.++++||.|+||||.+-.+.+.+......++-+. +... .....+. ..
T Consensus 244 ~~~~~~~~~~~~~----p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiE---DPVE------~~~~gI~----Q~ 306 (500)
T COG2804 244 PFQLARLLRLLNR----PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIE---DPVE------YQLPGIN----QV 306 (500)
T ss_pred HHHHHHHHHHHhC----CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEee---CCee------eecCCcc----ee
Confidence 3344555666654 3489999999999999999888887655544433332 2111 0000000 00
Q ss_pred cCCCcccc-cccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCC
Q 047309 111 EKDSIWNV-GDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 111 ~~~~~~~~-~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
.-.... -.....++..++..|-+|.+.++.+.+..+..... .-...++++|=.
T Consensus 307 --qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqA----alTGHLVlSTlH 360 (500)
T COG2804 307 --QVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQA----ALTGHLVLSTLH 360 (500)
T ss_pred --ecccccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHH----HhcCCeEeeecc
Confidence 000011 12355677777888889999999876654433332 222355555443
No 363
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00034 Score=50.73 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
.++.+++++|.+|.||||+|..+.+.+......+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45679999999999999999999998766544333
No 364
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.46 E-value=0.00031 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhhccc
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
|+++|.+|+||||+|+.+++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999876543
No 365
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.46 E-value=0.00057 Score=54.85 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=57.3
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccC
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEK 112 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 112 (218)
-...|...|....=+..+++-|+|++|+|||||+..++.+.++....++|+. ....+. ...+..+--++...-.
T Consensus 37 G~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~ld-----~~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 37 GSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-AEHALD-----PEYAESLGVDLDRLLV 110 (322)
T ss_dssp S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS--------HHHHHHTT--GGGEEE
T ss_pred CCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-Ccccch-----hhHHHhcCccccceEE
Confidence 3445555554222266789999999999999999999887766666777774 333221 1222222222222111
Q ss_pred CCcccccccHHHHHHhhC-CCeEEEEEeCCCC
Q 047309 113 DSIWNVGDGINILGSRLQ-HKKVLLVIDDVVD 143 (218)
Q Consensus 113 ~~~~~~~~~~~~l~~~l~-~~~~livlD~~~~ 143 (218)
..+...++.......+++ +..-++|+|.+..
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 122233344455555553 4556899998753
No 366
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.46 E-value=0.00048 Score=61.37 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=59.2
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL 110 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 110 (218)
..-+..|..+|....=+..+++.|+|++|+|||+|+..++.........++|+ ...+.+. ...++.+--.+...
T Consensus 42 sTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yI-d~E~t~~-----~~~A~~lGvDl~~l 115 (790)
T PRK09519 42 PTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFI-DAEHALD-----PDYAKKLGVDTDSL 115 (790)
T ss_pred cCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-CCccchh-----HHHHHHcCCChhHe
Confidence 34455666667521226678999999999999999988877665555666777 3433322 11222211111100
Q ss_pred cCCCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 111 EKDSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
........+.....+..... +..-+||+|.+.
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 11111222344444555443 456799999974
No 367
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.45 E-value=0.00016 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++.|.|++|+|||+++..++..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999998888653
No 368
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.45 E-value=0.00035 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
...++|+|+.|.|||||++.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36899999999999999999984
No 369
>PRK03839 putative kinase; Provisional
Probab=97.45 E-value=0.00013 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999763
No 370
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.45 E-value=0.00042 Score=61.48 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+.+..+.|+|.+|+|||||++.+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998876
No 371
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.45 E-value=0.0025 Score=49.64 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=91.0
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc------ccceEEEE---------echhhh
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE------FEGSSFLA---------DVREKF 90 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~------~~~~~~~~---------~~~~~~ 90 (218)
.+.++++.-..+.++... .+.+.+.++||+|.||-|.+..+.+++... -+...|.. .+.+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 356666666666666653 556889999999999999888888754321 01111111 111100
Q ss_pred ------ccCc-hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeE-EEEEeCCCChhH--hhHHhcCCCCCCCC
Q 047309 91 ------KNKG-SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKV-LLVIDDVVDIKQ--LEYLAGKREWFGSG 160 (218)
Q Consensus 91 ------~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-livlD~~~~~~~--~~~l~~~~~~~~~~ 160 (218)
++.+ --..+.+.+++++....+..... .+.+ ++||-++++... =.++..-...-.+.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~-------------qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQG-------------QRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhcc-------------ccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 0000 02345555666554433222111 1233 677777775321 11111111111456
Q ss_pred ceEEEEeCChh-hHhhc-CCCceeeCCCCChhHHHHHHHHhhcCCC--CCCchhHhhhc
Q 047309 161 SRIIVTSRDEH-LLKTY-GMDEIYKPNELNYHDALQLFNMKAFKIQ--KPLEECVQLSE 215 (218)
Q Consensus 161 ~~ilittr~~~-~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~--~~~~~~~~i~~ 215 (218)
+++|+...+.. +..-. +..-.+.++..+++|....+...+.... .+.+....||+
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 78887433321 11111 2245689999999999999998775443 34344444443
No 372
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.45 E-value=0.00056 Score=55.57 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-----ccc-ceEEEEechhhhc
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-----EFE-GSSFLADVREKFK 91 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-----~~~-~~~~~~~~~~~~~ 91 (218)
+..|.++|...- ....++.|+|++|+|||+|+..++-.... ... .++|+ +....+.
T Consensus 109 ~~~LD~lL~GG~-~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyI-dtE~~f~ 170 (342)
T PLN03186 109 SRELDKILEGGI-ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYI-DTEGTFR 170 (342)
T ss_pred CHHHHHhhcCCC-cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEE-ECCCCcc
Confidence 344555554432 55788999999999999999988854321 112 45566 5655554
No 373
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00021 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+..++|.||+|+|||||++++..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999999864
No 374
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.44 E-value=0.00079 Score=51.10 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
++..+.|.|++|+|||+|+..+++..... .++++ .+++
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~-~iGe 51 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYA-LIGE 51 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEE-EESE
T ss_pred cCCEEEEEcCcccccchhhHHHHhccccc--ceeee-eccc
Confidence 34577899999999999999999876433 23444 4444
No 375
>PRK06851 hypothetical protein; Provisional
Probab=97.44 E-value=0.00043 Score=56.57 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEech
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVR 87 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~ 87 (218)
.+.++|.|++|+|||||++.++....++...+.++.|..
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 478999999999999999999998766655454443433
No 376
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0006 Score=53.82 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+..++|||++|.|||-+|+.|+..+.-.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 346789999999999999999999976433
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.43 E-value=0.0003 Score=57.80 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
.+.++|+|++|+||||++..+++.+.... ..++.+...-+..-... ..+.. . .+..-..+.......++
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~--~~~~~--~-----~q~evg~~~~~~~~~l~ 219 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSP--DDLLP--P-----AQSQIGRDVDSFANGIR 219 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCC--ceeec--c-----cccccCCCccCHHHHHH
Confidence 35788999999999999999988654322 22222322212110000 00000 0 00000112234556778
Q ss_pred HhhCCCeEEEEEeCCCChhHhhHHh
Q 047309 127 SRLQHKKVLLVIDDVVDIKQLEYLA 151 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~~~~~l~ 151 (218)
..++..+-.|+++++.+.+.+...+
T Consensus 220 ~aLR~~PD~I~vGEiRd~et~~~al 244 (372)
T TIGR02525 220 LALRRAPKIIGVGEIRDLETFQAAV 244 (372)
T ss_pred HhhccCCCEEeeCCCCCHHHHHHHH
Confidence 8888889999999999887766443
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.43 E-value=0.0013 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+.++.++|++|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999988754
No 379
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0052 Score=49.10 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=81.0
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh-ccc--------cc-ceEEEEechhhhccCchHHHHHHHH
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI-SHE--------FE-GSSFLADVREKFKNKGSVISFQRQL 103 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~--------~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
++.+.+.+... .-....+++|+.|+||++++..+++.+ +.+ .+ .+.++...+.. . -.+-...+
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~----i-~vd~Ir~l 77 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD----L-SKSEFLSA 77 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc----C-CHHHHHHH
Confidence 44555555441 123466699999999999999999875 111 11 12222100100 0 11111222
Q ss_pred HHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCCh-hhHhh-cCCC
Q 047309 104 LVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDE-HLLKT-YGMD 179 (218)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~-~~~~~-~~~~ 179 (218)
...+...+ .-.+.+=++|+|+++... ....++..+..-...+.+|++|.+. .+... .+.+
T Consensus 78 ~~~~~~~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc 141 (299)
T PRK07132 78 INKLYFSS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC 141 (299)
T ss_pred HHHhccCC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe
Confidence 22221100 001356689999997653 3556666665545666666655543 33333 4568
Q ss_pred ceeeCCCCChhHHHHHHHHh
Q 047309 180 EIYKPNELNYHDALQLFNMK 199 (218)
Q Consensus 180 ~~~~l~~L~~~e~~~l~~~~ 199 (218)
..+++.+++.++..+.+.+.
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EEEECCCCCHHHHHHHHHHc
Confidence 88999999999999888765
No 380
>PRK14531 adenylate kinase; Provisional
Probab=97.42 E-value=0.00072 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.++|.|++|+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999865
No 381
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.41 E-value=0.0009 Score=56.24 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc-----CCCcccc-cc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE-----KDSIWNV-GD 120 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~-~~ 120 (218)
.++.-+.|.|.+|+|||+|+.+++.........++.+..+++... .+.++.+.+...-.... .....++ .+
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~r---Ev~efi~~~~~~~~l~rsvvV~atsd~p~~~r 218 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGAR 218 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 455678899999999999999998866544333333445555321 14455554443210000 0011111 11
Q ss_pred -----cHHHHHHhh---CCCeEEEEEeCCC
Q 047309 121 -----GINILGSRL---QHKKVLLVIDDVV 142 (218)
Q Consensus 121 -----~~~~l~~~l---~~~~~livlD~~~ 142 (218)
..-.+-+++ ++++.||++|++.
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 112234444 5789999999984
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00091 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.....+.|.|+.|+|||||++.++..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999863
No 383
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.41 E-value=0.00017 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++++|.|++|+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999764
No 384
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.40 E-value=0.00026 Score=57.45 Aligned_cols=48 Identities=29% Similarity=0.327 Sum_probs=38.9
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
..++|+++.+..+...+... +.+.+.|++|+|||+||+.++..+...|
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34889888888877777543 6888999999999999999999776443
No 385
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.40 E-value=0.001 Score=52.33 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
....+++.|++|+||||++..++..+..+...+.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 346899999999999999999988764433344444
No 386
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.012 Score=46.64 Aligned_cols=67 Identities=15% Similarity=0.017 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhHhh-cCCCceeeCCCC-----ChhHHHHHHH
Q 047309 131 HKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLLKT-YGMDEIYKPNEL-----NYHDALQLFN 197 (218)
Q Consensus 131 ~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~~~-~~~~~~~~l~~L-----~~~e~~~l~~ 197 (218)
+..=++|||+++.+ .....++..+..-..+..+|++|.+. .+... .+.+..+.+.++ +++++..+..
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~~~i~~~~~~~l~~ 169 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEKTLVSKEDIAYLIG 169 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhccCCCHHHHHHHHH
Confidence 44458999999864 45667776665545566666666664 33322 344556666654 4455555443
No 387
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.40 E-value=0.00048 Score=55.51 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+..|..+|...- ....++.|+|++|+|||+|+..++..
T Consensus 82 ~~~lD~ll~gGi-~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 82 SKELDKLLGGGI-ETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CHHHHHHhcCCC-CCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 344555554432 55789999999999999999988863
No 388
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.40 E-value=0.001 Score=56.09 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHHHHHHHHHHhhc-----cCCCccccc-
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISFQRQLLVEILKL-----EKDSIWNVG- 119 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~- 119 (218)
.++.-+.|.|.+|+|||+|+.+++....+.. +.+++. .+++.... +.++...+...-... -.....++.
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~rE---v~ef~~~~~~~~~l~rsvvv~atsd~~~~~ 216 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERSRE---GHELYHEMKESGVLDKTVMVYGQMNEPPGA 216 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcchHH---HHHHHHHHHhcCCcceeEEEecCCCCCHHH
Confidence 4566788999999999999999998765333 444444 56553211 444444443210000 000111111
Q ss_pred -----ccHHHHHHhh---CCCeEEEEEeCCC
Q 047309 120 -----DGINILGSRL---QHKKVLLVIDDVV 142 (218)
Q Consensus 120 -----~~~~~l~~~l---~~~~~livlD~~~ 142 (218)
...-.+-+++ .+++.|+++|++-
T Consensus 217 R~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 217 RMRVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1122234444 3789999999983
No 389
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.40 E-value=0.00077 Score=52.84 Aligned_cols=41 Identities=24% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
+..++++|+|.+|+|||+++.+++.+..+....++|+ ...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyv-s~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYV-STEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEE-EecC
Confidence 6678999999999999999999999877777778887 4444
No 390
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.00029 Score=51.76 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...+++|.|.+|+||||+++.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999977543
No 391
>PRK05973 replicative DNA helicase; Provisional
Probab=97.39 E-value=0.00057 Score=52.61 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..+..++|.|.+|+|||+|+.+++.........++|+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4567899999999999999999988654455556666
No 392
>PRK14529 adenylate kinase; Provisional
Probab=97.39 E-value=0.0013 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhhc
Q 047309 52 IGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67899999999999999998763
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.39 E-value=0.00014 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+++|.|++|+|||||++.+++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36799999999999999999865443
No 394
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.39 E-value=0.00082 Score=51.58 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
..|.+.+...- .....++|.|++|+|||+|+..++.........++|+.
T Consensus 7 ~~LD~~l~GGi-~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGI-PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCC-cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34445553322 56789999999999999999988765434455666774
No 395
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.39 E-value=0.00021 Score=54.75 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEE
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLA 84 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~ 84 (218)
|-+.|...- +..+.++|.|++|+|||+|+.+++.+.... ...++|+.
T Consensus 8 LD~~l~GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 344443322 567899999999999999999988755444 56777773
No 396
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.38 E-value=0.0021 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|+|.|++|+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999864
No 397
>PTZ00301 uridine kinase; Provisional
Probab=97.38 E-value=0.00031 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+|+|.|++|+||||||+.+.+++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH
Confidence 6899999999999999999987664
No 398
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.38 E-value=0.0028 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.+|.|++|+|||+|+..++-.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998753
No 399
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.38 E-value=0.00019 Score=53.40 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+++++|+||+|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46889999999999999999998864
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.37 E-value=0.00044 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
+++|+|+.|.||||+++.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999984
No 401
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.37 E-value=0.0011 Score=55.51 Aligned_cols=93 Identities=24% Similarity=0.266 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccC------CCcccc-c
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEK------DSIWNV-G 119 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~-~ 119 (218)
.++.-+.|.|.+|+|||+|+.+++.........++.+..+++.... +.++.+.+...- .... ....++ .
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rE---v~ef~~~~~~~~-~l~rtvvV~atsd~p~~~ 216 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESG-VIDKTALVYGQMNEPPGA 216 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchH---HHHHHHHHHhcC-CcceeEEEEECCCCCHHH
Confidence 4556788999999999999999988654443334444456553211 444544443210 0000 111111 1
Q ss_pred c-----cHHHHHHhh---CCCeEEEEEeCCCC
Q 047309 120 D-----GINILGSRL---QHKKVLLVIDDVVD 143 (218)
Q Consensus 120 ~-----~~~~l~~~l---~~~~~livlD~~~~ 143 (218)
+ ..-.+-+++ ++++.||++|++..
T Consensus 217 R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 217 RMRVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1 122234444 46899999999843
No 402
>PRK15115 response regulator GlrR; Provisional
Probab=97.37 E-value=0.0026 Score=53.76 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=35.2
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|+...+..+.+...... .....+.|+|++|+|||++|+.+.+..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888887777665554422 234578899999999999999887754
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00043 Score=49.88 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
....++|.|+.|.|||||++.++.... .....+++... .... .. ... ....+.-... ........-.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~-~~~----~~~~i~~~~q--lS~G~~~r~~l~~ 93 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LP-LEE----LRRRIGYVPQ--LSGGQRQRVALAR 93 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CC-HHH----HHhceEEEee--CCHHHHHHHHHHH
Confidence 346899999999999999999987543 22333443211 1000 00 001 1111000000 1111112222333
Q ss_pred hhCCCeEEEEEeCCCC---hh---HhhHHhcCCCCCCCCceEEEEeCChhhHhhc
Q 047309 128 RLQHKKVLLVIDDVVD---IK---QLEYLAGKREWFGSGSRIIVTSRDEHLLKTY 176 (218)
Q Consensus 128 ~l~~~~~livlD~~~~---~~---~~~~l~~~~~~~~~~~~ilittr~~~~~~~~ 176 (218)
.+...+-++++|+... .. .+..++..+. ..+..++++|.+.+....+
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 3444577999999843 11 2222222222 2246788899887765553
No 404
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00022 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..++.++|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56789999999999999999988753
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.36 E-value=0.00038 Score=52.26 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++.+++|+|.+|+|||||++.+...+........++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999998764433333444
No 406
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.35 E-value=0.00063 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|+|.|++|+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 407
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.35 E-value=0.0022 Score=55.74 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCc---------ccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSI---------WNV 118 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~ 118 (218)
...+|+|+|+.|.||||-+-++.. ...|.....+.|.+.. ......+++.....+....+... .+.
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~--edGY~~~GmIGcTQPR---RvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLY--EDGYADNGMIGCTQPR---RVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHH--hcccccCCeeeecCch---HHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 347999999999999994444443 2344434455555442 11256677777777643322111 111
Q ss_pred ccc------HHHHHHhhCCC----eEEEEEeCCCChhH----hhHHhcCCCCCCCCceEEEEeCChhh---HhhcCCCce
Q 047309 119 GDG------INILGSRLQHK----KVLLVIDDVVDIKQ----LEYLAGKREWFGSGSRIIVTSRDEHL---LKTYGMDEI 181 (218)
Q Consensus 119 ~~~------~~~l~~~l~~~----~~livlD~~~~~~~----~~~l~~~~~~~~~~~~ilittr~~~~---~~~~~~~~~ 181 (218)
... --.+++.+.++ =.+||+|++++... +.-++.....-....++|+||-..+. .+.++....
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 111 12355555443 34899999976432 22222222222456899998776543 444454445
Q ss_pred eeCCCC
Q 047309 182 YKPNEL 187 (218)
Q Consensus 182 ~~l~~L 187 (218)
+.+++=
T Consensus 525 f~IpGR 530 (1042)
T KOG0924|consen 525 FTIPGR 530 (1042)
T ss_pred eeecCC
Confidence 555543
No 408
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.35 E-value=0.0002 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00019 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.++-+|.|.|++|||||||.+.++.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456999999999999999998886
No 410
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.34 E-value=0.0015 Score=52.55 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
....++|.|++|+|||||++.++..+.... .++.+....+...... +.. .+...........-...+.+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~-------~~~-~l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHP-------NYV-HLFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCC-------CEE-EEEecCCCCCcCccCHHHHHHH
Confidence 346899999999999999999988664432 2333322222110000 000 0000000001112245566777
Q ss_pred hhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCc-eEEEEeCChhh
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGS-RIIVTSRDEHL 172 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~-~ilittr~~~~ 172 (218)
.++..+-.|++|++...+.+.. +... ..|. .++.|++....
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~-l~a~---~~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDF-IRAV---NTGHPGSITTLHAGSP 255 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHH-HHHH---hcCCCeEEEEEeCCCH
Confidence 7788888999999988665543 3322 2233 34667666543
No 411
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0058 Score=53.92 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHhhhcCCCC------CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 27 LVGIDSRLEELRSLMNKGPND------DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~------~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
-.+++..+..+...+...... -..+++++|++|+|||++++.+++.+.-|
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 345666777777777664432 34679999999999999999999977555
No 412
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0015 Score=49.16 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.....++|.|+.|+|||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4457999999999999999999887543
No 413
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.33 E-value=0.00024 Score=52.74 Aligned_cols=30 Identities=33% Similarity=0.456 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFE 78 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~ 78 (218)
.++++|.||+|+||+||+..+++.....|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 468999999999999999999987543443
No 414
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.32 E-value=0.0014 Score=52.87 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.++.+.|++|+||||++..++..+......+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 467999999999999999999998765543333333
No 415
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.0025 Score=52.14 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHH------hhccCCCc-----
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEI------LKLEKDSI----- 115 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~----- 115 (218)
.++-.|+|.|..|+||||+++-+..-++ .-.+.+.+..-.-+.+..+....++..++.+. .+......
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~ 425 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIE 425 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHH
Confidence 4456899999999999999986665333 33444555322222223333445554443322 22111100
Q ss_pred -------------------------ccccccHHHHHHhhCCCeEEEEEeCC--CChhH-----hhHHhcCCCCCCCCceE
Q 047309 116 -------------------------WNVGDGINILGSRLQHKKVLLVIDDV--VDIKQ-----LEYLAGKREWFGSGSRI 163 (218)
Q Consensus 116 -------------------------~~~~~~~~~l~~~l~~~~~livlD~~--~~~~~-----~~~l~~~~~~~~~~~~i 163 (218)
.........+..++ +.+-++|+|+. |.+.. +..+++.+. ..|..|
T Consensus 426 ~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All-EeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK--~qGKTI 502 (546)
T COG4615 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-EERDILVLDEWAADQDPAFRREFYQVLLPLLK--EQGKTI 502 (546)
T ss_pred HHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH-hhCCeEEeehhhccCChHHHHHHHHHHhHHHH--HhCCeE
Confidence 00112233344433 34568899986 44333 334444443 467778
Q ss_pred EEEeCChhh---Hhh---cCCCceeeCCCCChh
Q 047309 164 IVTSRDEHL---LKT---YGMDEIYKPNELNYH 190 (218)
Q Consensus 164 littr~~~~---~~~---~~~~~~~~l~~L~~~ 190 (218)
+..|.++.. +.+ ++..+..++.|=+.+
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~~~e~tge~~~ 535 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQLSELTGEERD 535 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCceeeccccccc
Confidence 888888743 222 344555666554443
No 416
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.31 E-value=0.0017 Score=56.56 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=58.7
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
.+..++.+.+++.. ..+.++|+|++|+||||.+..+.+.+...-..++- +....... + ..+ .+
T Consensus 301 ~~~~~~~l~~~~~~----~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~t---iEdpvE~~--~----~~~-~q--- 363 (564)
T TIGR02538 301 EPDQKALFLEAIHK----PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIST---AEDPVEIN--L----PGI-NQ--- 363 (564)
T ss_pred CHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEE---ecCCceec--C----CCc-eE---
Confidence 44556666666653 34789999999999999998887765432112221 22211100 0 000 00
Q ss_pred ccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhH
Q 047309 110 LEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEY 149 (218)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~ 149 (218)
.. ............++..++..+-+|++.++.+.+....
T Consensus 364 ~~-v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~ 402 (564)
T TIGR02538 364 VN-VNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEI 402 (564)
T ss_pred EE-eccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHH
Confidence 00 0001112456677888888899999999988765443
No 417
>PRK05439 pantothenate kinase; Provisional
Probab=97.31 E-value=0.00047 Score=55.17 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...-+|+|.|++|+||||+|+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567899999999999999999888654
No 418
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.31 E-value=0.0008 Score=56.48 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-.+.|.||+|.|||||++.+..
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 356899999999999999998886
No 419
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.30 E-value=0.00062 Score=59.12 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=41.1
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.++..+-|.+..+.|.++..... .+..+++|+|.+|+||||+++.++..+..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~-~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRH-KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhcccc-CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34457778878887777776544 55668999999999999999999997754
No 420
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0014 Score=55.87 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
....++.|+|++|+||||++.+++..+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999876543
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00024 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+.+++|+|++|+|||||++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457899999999999999999998653
No 422
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.30 E-value=0.0015 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|+.|.|||||++.++...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999998754
No 423
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.30 E-value=0.00033 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
+|+|.|.+|+|||||++.++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987643
No 424
>PRK14526 adenylate kinase; Provisional
Probab=97.30 E-value=0.0016 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++|.|++|+||||+++.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 425
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.30 E-value=0.00043 Score=54.27 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=44.5
Q ss_pred cccccccccchhHHH---HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 22 ETLKKLVGIDSRLEE---LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~---l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
.....|+|.++..++ +.+++.... -..+.+++.|++|+|||+||..+.+++...-+++-
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~Kk-maGravLlaGppgtGKTAlAlaisqELG~kvPFcp 96 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKK-MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCP 96 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhh-ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCccc
Confidence 455679998877665 455555443 66799999999999999999999998765544433
No 426
>PRK15453 phosphoribulokinase; Provisional
Probab=97.29 E-value=0.0012 Score=51.82 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
+..+++|.|.+|+||||+++.+++.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999986643
No 427
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.29 E-value=0.00097 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
++++|+|.+|+||||+++.+...+...
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~ 365 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEEL 365 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999998865443
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.29 E-value=0.0018 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
++++|+|+.|.||||+++.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 429
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.28 E-value=0.00022 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 430
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.28 E-value=0.0014 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~ 70 (218)
+.++|+|+.|.|||||++.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 431
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0024 Score=46.93 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+-.+.|.|+.|+|||||.+.++--++..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 4588999999999999999999754433
No 432
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00029 Score=52.61 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|+|-|+-|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999765
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.0011 Score=50.71 Aligned_cols=24 Identities=25% Similarity=-0.002 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.++|.|+.|.||||+.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998887
No 434
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.27 E-value=0.0031 Score=52.67 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.++.++|++|+||||++..++..+......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 367899999999999999999988665543334444
No 435
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.27 E-value=0.00022 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998863
No 436
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.27 E-value=0.0056 Score=55.37 Aligned_cols=149 Identities=14% Similarity=0.067 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH-hhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcc---------cc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD-LISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIW---------NV 118 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~ 118 (218)
..+++|.|++|+||||-+=++.- .........-.+ |.+. ..-+...+.+.+...-......... +.
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~Ii-cTQP---RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~ 263 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEAIESGAACNII-CTQP---RRISAISVAERVAKERGESLGEEVGYQVRLESKRSR 263 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEE-ecCC---chHHHHHHHHHHHHHhccccCCeeeEEEeeecccCC
Confidence 46999999999999997755544 332222333333 3332 1112566677766655222221110 00
Q ss_pred -c----ccHHHHHHhhCCCe-----EEEEEeCCCChhH----hhHHhcCCCCCCCCceEEEE--eCChh-hHhhcCCCce
Q 047309 119 -G----DGINILGSRLQHKK-----VLLVIDDVVDIKQ----LEYLAGKREWFGSGSRIIVT--SRDEH-LLKTYGMDEI 181 (218)
Q Consensus 119 -~----~~~~~l~~~l~~~~-----~livlD~~~~~~~----~~~l~~~~~~~~~~~~ilit--tr~~~-~~~~~~~~~~ 181 (218)
. .-...+-+.+.+.+ .-||+|++++.+. +--++..+...+++.++|+- |-+.+ ....++....
T Consensus 264 ~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pv 343 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPV 343 (924)
T ss_pred ceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCce
Confidence 0 11223444443333 3699999965332 11112222233688899883 33333 3333466677
Q ss_pred eeCCCCChhHHHHHHHHhhc
Q 047309 182 YKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 182 ~~l~~L~~~e~~~l~~~~~~ 201 (218)
+.+++.+.....-++...+.
T Consensus 344 i~i~grtfpV~~~fLEDil~ 363 (924)
T KOG0920|consen 344 ITIPGRTFPVKEYFLEDILS 363 (924)
T ss_pred EeecCCCcchHHHHHHHHHH
Confidence 89999998877777776553
No 437
>PRK00625 shikimate kinase; Provisional
Probab=97.27 E-value=0.0003 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.|+|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 438
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.26 E-value=0.0018 Score=47.38 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++|.|++|+|||++|.+++.. ....+.|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence 679999999999999999875 22345555
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.00025 Score=57.19 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+++-++++.||+|+|||||++.++-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456999999999999999999996
No 440
>PRK13947 shikimate kinase; Provisional
Probab=97.26 E-value=0.00029 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999764
No 441
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.26 E-value=0.0012 Score=56.88 Aligned_cols=52 Identities=25% Similarity=0.253 Sum_probs=38.5
Q ss_pred hhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 32 SRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 32 ~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
.-+..|.+.+...- .....+.|.|++|+|||+|+.+++.........++|+.
T Consensus 257 tGi~~lD~~l~GG~-~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 257 SGVPDLDEMLGGGF-FRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred CCcHHHHHhhcCCC-CCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34555666664332 55678899999999999999999987655667777773
No 442
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.26 E-value=0.00039 Score=58.76 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHhhh-----cCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 27 LVGIDSRLEELRSLMN-----KGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~-----~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+---...++++..||. ... -..++++|+||+|+||||.++.+++.+
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4445667888999997 222 556899999999999999999888853
No 443
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.26 E-value=0.00077 Score=53.26 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
....++.|.|.+|+|||||+..+...+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999998765543333
No 444
>PLN02459 probable adenylate kinase
Probab=97.25 E-value=0.002 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.|++|+||||++..+++.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999865
No 445
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.25 E-value=0.0017 Score=59.58 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+++|+|.+|+||||+++.+..-+..
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~ 388 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEA 388 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 47789999999999998877765543
No 446
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.25 E-value=0.0027 Score=53.34 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~ 83 (218)
+..|.+++... ..+..++|.|.+|+|||+++..++.... ++...+.|+
T Consensus 181 ~~~LD~~~~G~--~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f 229 (421)
T TIGR03600 181 LPKLDRLTNGL--VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF 229 (421)
T ss_pred ChhHHHHhcCC--CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 34444444321 3456889999999999999999997553 333445555
No 447
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00048 Score=51.94 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+..+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 345789999999999999999999987644
No 448
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.24 E-value=0.00035 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+++|.|.+|+||||++..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999864
No 449
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.24 E-value=0.0023 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..++++|+|+.|.||||+++.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999998875
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.23 E-value=0.00093 Score=51.39 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
+....+.|.|++|+|||+|+.+++....++...+.|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45579999999999999998777765544445556663
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.23 E-value=0.00052 Score=48.55 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=24.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
+++.|+|+.|+|||||++.+++.+.++...+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47889999999999999999998765543333
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.23 E-value=0.00037 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~ 70 (218)
....++|.|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999876
No 453
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00028 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.|.|++|+||||+++.++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 57899999999999999999865
No 454
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.23 E-value=0.0027 Score=49.83 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc---c-cccceEEEEechhhhccCchHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS---H-EFEGSSFLADVREKFKNKGSVISFQRQLLV 105 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (218)
.+..-+.|.|.+|+|||+|+.+++++.. + +...++|. .+++.... ..++.+.+..
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~-~IGeR~re---v~e~~~~~~~ 125 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA-AMGITMED---ARFFKDDFEE 125 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE-EeccccHH---HHHHHHHhhh
Confidence 4456778999999999999999887643 1 12334444 56553221 4455544443
No 455
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.23 E-value=0.00043 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+-.+.|+||+|+|||||.+.++.-
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhc
Confidence 457889999999999999999984
No 456
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.0015 Score=52.43 Aligned_cols=102 Identities=24% Similarity=0.270 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
...+-+++||+-|.|||.|+-.+++.+.-+-.. +-++..+ |..+.+.+...- + . .+-+..+-
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~-------R~HFh~F--M~~vH~~l~~l~-g---~-----~dpl~~iA 124 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKR-------RLHFHRF--MARVHQRLHTLQ-G---Q-----TDPLPPIA 124 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccc-------cccHHHH--HHHHHHHHHHHc-C---C-----CCccHHHH
Confidence 456789999999999999999999865332111 1111111 555555554432 1 1 12333444
Q ss_pred HhhCCCeEEEEEeCCC--Chh---HhhHHhcCCCCCCCCceEEEEeC
Q 047309 127 SRLQHKKVLLVIDDVV--DIK---QLEYLAGKREWFGSGSRIIVTSR 168 (218)
Q Consensus 127 ~~l~~~~~livlD~~~--~~~---~~~~l~~~~~~~~~~~~ilittr 168 (218)
..+.++-.+|+||++. +.. -+..++..+. ..|..++.||.
T Consensus 125 ~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN 169 (367)
T COG1485 125 DELAAETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSN 169 (367)
T ss_pred HHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCC
Confidence 4444666799999874 322 2333333332 44664444543
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.22 E-value=0.0006 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+++.|.|++|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999877654
No 458
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.22 E-value=0.0017 Score=54.22 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.....+.|.|++|+|||||++.++..... +.+++ ..+++
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGE 198 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGE 198 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcC
Confidence 44567899999999999999999864322 33333 35555
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.22 E-value=0.0015 Score=50.03 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
+.+.+...- .....+.|.|++|+|||+++.+++....+....+.|+ +..+
T Consensus 5 LD~~l~gGi-~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~-s~e~ 54 (224)
T TIGR03880 5 LDEMLGGGF-PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYI-SLEE 54 (224)
T ss_pred hHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE-ECCC
Confidence 444443322 4578999999999999999999987654444556666 4433
No 460
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0051 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
...-+-+|.||.|.|||||+..++-
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999998886
No 461
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.21 E-value=0.00025 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++|.|++|+||||+++.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.0003 Score=50.80 Aligned_cols=20 Identities=35% Similarity=0.720 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~ 70 (218)
.++|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999888
No 463
>PRK14527 adenylate kinase; Provisional
Probab=97.19 E-value=0.00041 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++|.|++|+||||+++.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 464
>PHA02774 E1; Provisional
Probab=97.19 E-value=0.0098 Score=51.32 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=31.7
Q ss_pred hhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 32 SRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 32 ~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+..|..++... ++.+.++|+||+|+|||.++..+++-+.
T Consensus 419 ~fl~~lk~~l~~~--PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGI--PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556667776543 4456899999999999999999998763
No 465
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.19 E-value=0.00047 Score=55.87 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=37.3
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+-..++|.+..+..+.-.+.. .....+++.|++|+|||++|+.+++-+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~---~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID---PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc---cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4456689999998887754432 112468899999999999999998855
No 466
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.19 E-value=0.0032 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++.+|+|.+|+||||++..+...+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999988887543
No 467
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.19 E-value=0.00038 Score=47.40 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHHh
Q 047309 52 IGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~ 72 (218)
|+|.|.+|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999974
No 468
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.19 E-value=0.0013 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+++|.|.+|+||||+++.+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999876543
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.00029 Score=52.81 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.18 E-value=0.00034 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999998754
No 471
>PRK06217 hypothetical protein; Validated
Probab=97.17 E-value=0.00042 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.|+|.|.+|+|||||++.+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 472
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00037 Score=52.24 Aligned_cols=56 Identities=7% Similarity=0.114 Sum_probs=33.3
Q ss_pred cHHHHHHhhCCCeEEEEEeCCCC---hhHhhHHhcCCC-CCCCCceEEEEeCChhhHhhc
Q 047309 121 GINILGSRLQHKKVLLVIDDVVD---IKQLEYLAGKRE-WFGSGSRIIVTSRDEHLLKTY 176 (218)
Q Consensus 121 ~~~~l~~~l~~~~~livlD~~~~---~~~~~~l~~~~~-~~~~~~~ilittr~~~~~~~~ 176 (218)
..-.|-+.+.=++-+++||+.-+ ++.....+.... ....|...++.|.+-..+...
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 33445556666677999999854 333333322211 114677888889987666553
No 473
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0014 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+.|+|+||.|+|||||++.+..
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhc
Confidence 4677999999999999998886
No 474
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.16 E-value=0.0008 Score=53.41 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+-+++|.|++|+||||+++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999988776543
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00036 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+.-++.+.||+|+||||+++.++-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446899999999999999999996
No 476
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0011 Score=52.05 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=33.5
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+|.+.+.... ....++.|+|.||+|||||...+...+.++...+..+
T Consensus 39 ~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 39 ELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 4444443322 5566899999999999999999999886665444433
No 477
>PRK14530 adenylate kinase; Provisional
Probab=97.15 E-value=0.00045 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.++|.|++|+||||+++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 478
>PLN02674 adenylate kinase
Probab=97.15 E-value=0.0041 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999865
No 479
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.14 E-value=0.0029 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++.+|+|.+|+||||++..+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998888765
No 480
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.14 E-value=0.00042 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++.|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999865
No 481
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.14 E-value=0.0049 Score=51.27 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=44.7
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
-....-|||+.+++.|.+.|.........+-+|.|.=|.|||.+++.+.....++
T Consensus 22 Gl~~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~ 76 (416)
T PF10923_consen 22 GLDHIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEK 76 (416)
T ss_pred cCcceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc
Confidence 3344579999999999999976554677889999999999999999888854433
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.14 E-value=0.00057 Score=40.89 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...+|+|+.|+|||||+.++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999998877643
No 483
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.14 E-value=0.0034 Score=49.55 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEE-EEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSF-LADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINIL 125 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (218)
...+.|+|+||.|+||||-+..+.+.+.++....+. +.+-=+ + +-...+.+.++ . .-..+.......+
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE-~-----vh~skkslI~Q----R-EvG~dT~sF~~aL 191 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIE-Y-----VHESKKSLINQ----R-EVGRDTLSFANAL 191 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchH-h-----hhcchHhhhhH----H-HhcccHHHHHHHH
Confidence 345799999999999999766666655555443333 221111 0 11111222222 0 1112333456678
Q ss_pred HHhhCCCeEEEEEeCCCChhHhhHHh
Q 047309 126 GSRLQHKKVLLVIDDVVDIKQLEYLA 151 (218)
Q Consensus 126 ~~~l~~~~~livlD~~~~~~~~~~l~ 151 (218)
+..|+..+-+|++-+..+.+....-+
T Consensus 192 raALReDPDVIlvGEmRD~ETi~~AL 217 (353)
T COG2805 192 RAALREDPDVILVGEMRDLETIRLAL 217 (353)
T ss_pred HHHhhcCCCEEEEeccccHHHHHHHH
Confidence 88888889999999998876655433
No 484
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.14 E-value=0.0011 Score=54.57 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=32.2
Q ss_pred ccccchhHHHHHHhhhcCCC--------------CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 27 LVGIDSRLEELRSLMNKGPN--------------DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~--------------~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..|-.+++..|.+.+...+. ...-++.|+|.+|+||||++++++..
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 34456666666555532111 34568899999999999999999874
No 485
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.0018 Score=52.86 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCc-cc---ccccHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSI-WN---VGDGINI 124 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---~~~~~~~ 124 (218)
++-+.|+|.-|+|||.|+-.++...... |- .-+-++..+ |..+-+++-......+.... .. .-+-+..
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i-----~r-kqRvHFh~f--M~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPPI-----WR-KQRVHFHGF--MLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCch-----hh-hhhhhHHHH--HHHHHHHHHHHHHhccccCccccccccCCccHH
Confidence 6789999999999999999998643211 10 111112111 55555554332222211111 11 1133444
Q ss_pred HHHhhCCCeEEEEEeCCCChhH-----hhHHhcCCCCCCCCceEEEEeCCh
Q 047309 125 LGSRLQHKKVLLVIDDVVDIKQ-----LEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 125 l~~~l~~~~~livlD~~~~~~~-----~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
+-.......+||.||++.-.+- +..+...+. ++| .|++.|.|+
T Consensus 186 vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~G-vVlvATSNR 233 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLF--KNG-VVLVATSNR 233 (467)
T ss_pred HHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHH--hCC-eEEEEeCCC
Confidence 4455556789999999864322 333333322 334 466655554
No 486
>PRK13764 ATPase; Provisional
Probab=97.13 E-value=0.0014 Score=56.89 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL 129 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 129 (218)
+.++|+|++|+||||++..++..+..+...+..+....+..-.. ...+. . ... ..........+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~---------~i~q~---~-~~~---~~~~~~~~~lL 321 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPP---------EITQY---S-KLE---GSMEETADILL 321 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCC---------cceEE---e-ecc---ccHHHHHHHHH
Confidence 55889999999999999999987754433333333222211000 00000 0 000 01112222335
Q ss_pred CCCeEEEEEeCCCChhHhhHH
Q 047309 130 QHKKVLLVIDDVVDIKQLEYL 150 (218)
Q Consensus 130 ~~~~~livlD~~~~~~~~~~l 150 (218)
.-.+-.|++|++.+.+.+..+
T Consensus 322 R~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 322 LVRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hhCCCEEEECCCCCHHHHHHH
Confidence 566789999999988877654
No 487
>PRK13808 adenylate kinase; Provisional
Probab=97.13 E-value=0.0021 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
|+|.|++|+||||++..+++.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7799999999999999998865
No 488
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.13 E-value=0.0042 Score=52.43 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~ 83 (218)
..+..++|.|.+|+|||+++..++.... ++...+.|+
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~ 230 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFF 230 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 3456899999999999999999987643 233445555
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=97.12 E-value=0.00053 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+++|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998753
No 490
>PRK06761 hypothetical protein; Provisional
Probab=97.12 E-value=0.00069 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=24.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
++++|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987544
No 491
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.12 E-value=0.003 Score=49.56 Aligned_cols=90 Identities=14% Similarity=0.020 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc-----CCCccccc-
Q 047309 47 DDVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE-----KDSIWNVG- 119 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~- 119 (218)
.+..-+.|.|.+|+|||+|+ ..+++.. ..+..+++..+++.... +.++.+.+...-.... .....+..
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~e---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAST---VAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccchHH---HHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 44567889999999999995 5565543 23444344456663221 4445544443210000 01111111
Q ss_pred ---------ccHHHHHHhhCCCeEEEEEeCCCC
Q 047309 120 ---------DGINILGSRLQHKKVLLVIDDVVD 143 (218)
Q Consensus 120 ---------~~~~~l~~~l~~~~~livlD~~~~ 143 (218)
.+++.++. ++++.||++|++..
T Consensus 142 r~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr 172 (274)
T cd01132 142 QYLAPYTGCAMGEYFMD--NGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCEEEEEcChHH
Confidence 12223333 58899999999954
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.12 E-value=0.00052 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhh
Q 047309 52 IGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~ 73 (218)
++|+|++|+||||+++.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999865
No 493
>PRK13948 shikimate kinase; Provisional
Probab=97.11 E-value=0.0006 Score=50.43 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...+.+++.|+.|+||||+++.+++.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998764
No 494
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.0032 Score=47.88 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=56.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcc---cccce-EEEEechhhhccCchHHHH-HHHHHHHHhhccCCCcccccccHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISH---EFEGS-SFLADVREKFKNKGSVISF-QRQLLVEILKLEKDSIWNVGDGINIL 125 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (218)
-.+|.|++|+|||||++.+++-+.. .|... +-+.+.+..... + +..+ +..+..++.-.. ......-+..++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~-~~gvpq~~~g~R~dVld--~cpk~~gmmmaI 214 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-C-LNGVPQHGRGRRMDVLD--PCPKAEGMMMAI 214 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-c-ccCCchhhhhhhhhhcc--cchHHHHHHHHH
Confidence 3679999999999999999985422 23222 222222211100 0 0000 000000100000 000011122223
Q ss_pred HHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhhcC
Q 047309 126 GSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYG 177 (218)
Q Consensus 126 ~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~ 177 (218)
++ -.+-++|+|++....+..++...+ ..|.+++.|..-..+.+..+
T Consensus 215 rs---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~iedl~k 260 (308)
T COG3854 215 RS---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIEDLIK 260 (308)
T ss_pred Hh---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHHhhc
Confidence 32 346699999998766555554332 45778888877655544433
No 495
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.11 E-value=0.0014 Score=56.78 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+.+..++|+|++|+|||||++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999988864
No 496
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.11 E-value=0.002 Score=52.26 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc-cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK-NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
.+.++|+|++|+||||++..++..+..... ++.+....+..- ..+.... +...............+.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~r-i~tiEd~~El~l~~~~n~~~--------~~~~~~~~~~~~~~~~~ll~~ 230 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIER-LITVEDAREIVLSNHPNRVH--------LLASKGGQGRAKVTTQDLIEA 230 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCe-EEEecCCCccccccCCCEEE--------EEecCCCCCcCcCcHHHHHHH
Confidence 367889999999999999999987654422 232322222110 0000000 000000001112235667778
Q ss_pred hhCCCeEEEEEeCCCChhHhhHH
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYL 150 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l 150 (218)
.++-.+-.||++++...+.+..+
T Consensus 231 ~LR~~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 231 CLRLRPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred HhccCCCeEEEEecCCHHHHHHH
Confidence 88888889999999987766543
No 497
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.11 E-value=0.0011 Score=45.53 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....+|++.|+=|.|||||++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999999854
No 498
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.11 E-value=0.002 Score=51.92 Aligned_cols=88 Identities=25% Similarity=0.221 Sum_probs=51.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccc--cceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEF--EGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
..++|.|++|+||||++..++....... ..++-+....+-....... ... ...........++.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~-----------v~l---~~~~~~~~~~lv~~ 210 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENA-----------VAL---HTSDTVDMARLLKS 210 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCE-----------EEe---ccCCCcCHHHHHHH
Confidence 4678999999999999999998653221 2222222222211000000 000 00112345667778
Q ss_pred hhCCCeEEEEEeCCCChhHhhHHh
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYLA 151 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l~ 151 (218)
.++-.+-.|++.++...+.+..+.
T Consensus 211 aLR~~PD~IivGEiRg~ea~~~l~ 234 (323)
T PRK13833 211 TMRLRPDRIIVGEVRDGAALTLLK 234 (323)
T ss_pred HhCCCCCEEEEeecCCHHHHHHHH
Confidence 888888899999998877665443
No 499
>PLN02200 adenylate kinase family protein
Probab=97.11 E-value=0.0006 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++|.|++|+||||+++.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998865
No 500
>PRK13949 shikimate kinase; Provisional
Probab=97.10 E-value=0.00058 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998763
Done!