Query 047309
Match_columns 218
No_of_seqs 120 out of 1341
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 17:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 8.2E-27 2.8E-31 199.1 17.7 180 28-217 131-322 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-22 4.5E-27 186.9 16.7 187 19-215 118-315 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 7.3E-22 2.5E-26 169.9 14.2 171 20-202 119-301 (591)
4 1vt4_I APAF-1 related killer D 99.9 7.6E-22 2.6E-26 174.8 12.9 162 27-201 130-312 (1221)
5 1w5s_A Origin recognition comp 99.7 2.5E-16 8.5E-21 129.5 11.6 174 22-200 19-228 (412)
6 2qen_A Walker-type ATPase; unk 99.6 1.4E-15 4.9E-20 122.2 12.0 172 18-200 5-216 (350)
7 2qby_B CDC6 homolog 3, cell di 99.6 2.3E-15 8E-20 122.7 13.4 172 22-201 17-211 (384)
8 2v1u_A Cell division control p 99.6 3.7E-15 1.3E-19 121.4 14.0 175 22-201 16-215 (387)
9 2fna_A Conserved hypothetical 99.6 3.6E-15 1.2E-19 120.1 13.6 171 18-200 6-222 (357)
10 2qby_A CDC6 homolog 1, cell di 99.6 2.8E-15 9.6E-20 122.0 10.0 174 22-200 17-210 (386)
11 1fnn_A CDC6P, cell division co 99.6 2.5E-14 8.4E-19 116.7 15.1 175 22-201 14-207 (389)
12 2chg_A Replication factor C sm 99.6 7.5E-14 2.6E-18 104.9 14.5 158 21-201 13-175 (226)
13 1njg_A DNA polymerase III subu 99.6 1.2E-13 4E-18 105.1 14.6 169 21-201 19-199 (250)
14 3te6_A Regulatory protein SIR3 99.5 3.4E-13 1.2E-17 106.8 11.5 174 23-202 18-213 (318)
15 1jbk_A CLPB protein; beta barr 99.5 4.1E-13 1.4E-17 98.5 9.9 150 22-196 19-194 (195)
16 1sxj_B Activator 1 37 kDa subu 99.4 3.8E-12 1.3E-16 101.1 11.3 157 22-201 18-180 (323)
17 2chq_A Replication factor C sm 99.3 1.8E-11 6E-16 97.1 12.7 157 22-202 14-176 (319)
18 1iqp_A RFCS; clamp loader, ext 99.3 1.1E-11 3.9E-16 98.5 11.2 157 22-201 22-183 (327)
19 3h4m_A Proteasome-activating n 99.3 7E-11 2.4E-15 92.4 14.3 160 19-203 11-204 (285)
20 1jr3_A DNA polymerase III subu 99.2 3.5E-11 1.2E-15 97.5 10.5 167 23-201 14-192 (373)
21 3syl_A Protein CBBX; photosynt 99.2 7.7E-11 2.6E-15 93.2 10.4 149 26-201 32-218 (309)
22 2z4s_A Chromosomal replication 99.2 3.9E-10 1.3E-14 93.6 14.8 155 24-201 104-277 (440)
23 3eie_A Vacuolar protein sortin 99.2 1.1E-09 3.8E-14 87.3 16.9 168 21-215 14-214 (322)
24 3bos_A Putative DNA replicatio 99.2 1.2E-11 4.3E-16 94.0 5.3 146 22-201 25-188 (242)
25 3d8b_A Fidgetin-like protein 1 99.2 1E-09 3.4E-14 88.8 16.4 184 5-215 66-281 (357)
26 1l8q_A Chromosomal replication 99.2 8.5E-10 2.9E-14 87.9 15.3 155 23-201 9-180 (324)
27 3pvs_A Replication-associated 99.2 2.9E-10 9.9E-15 94.4 12.0 150 21-202 22-180 (447)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.5E-09 5.1E-14 83.7 15.1 155 23-202 4-192 (262)
29 1sxj_D Activator 1 41 kDa subu 99.1 5.1E-10 1.8E-14 89.9 12.3 167 22-201 34-206 (353)
30 1sxj_A Activator 1 95 kDa subu 99.1 8.2E-10 2.8E-14 93.5 13.5 177 22-214 36-238 (516)
31 3uk6_A RUVB-like 2; hexameric 99.1 7.9E-10 2.7E-14 89.5 12.7 51 24-75 43-96 (368)
32 3u61_B DNA polymerase accessor 99.1 7.1E-10 2.4E-14 88.3 11.4 143 22-195 23-173 (324)
33 1xwi_A SKD1 protein; VPS4B, AA 99.1 1.2E-08 4E-13 81.3 18.4 170 22-215 9-209 (322)
34 2p65_A Hypothetical protein PF 99.1 4.1E-10 1.4E-14 82.0 8.7 50 23-75 20-69 (187)
35 1d2n_A N-ethylmaleimide-sensit 99.1 3.1E-09 1.1E-13 82.5 13.8 153 24-199 32-211 (272)
36 1sxj_E Activator 1 40 kDa subu 99.1 2.1E-09 7.3E-14 86.5 13.1 169 22-201 11-207 (354)
37 2qp9_X Vacuolar protein sortin 99.1 7.7E-09 2.6E-13 83.5 16.2 170 21-215 47-247 (355)
38 1hqc_A RUVB; extended AAA-ATPa 99.1 4.6E-10 1.6E-14 89.3 8.9 150 22-202 9-183 (324)
39 3hu3_A Transitional endoplasmi 99.1 3.7E-09 1.3E-13 88.7 14.5 167 24-215 203-401 (489)
40 3pxg_A Negative regulator of g 99.1 1.7E-09 5.9E-14 90.4 12.3 150 23-202 178-340 (468)
41 3vfd_A Spastin; ATPase, microt 99.1 4.7E-09 1.6E-13 85.8 14.5 156 22-202 112-297 (389)
42 1qvr_A CLPB protein; coiled co 99.0 1.6E-09 5.6E-14 96.8 11.9 152 23-200 168-345 (854)
43 4b4t_J 26S protease regulatory 99.0 1.1E-08 3.9E-13 83.1 15.3 169 22-215 145-348 (405)
44 3pfi_A Holliday junction ATP-d 99.0 4.2E-09 1.4E-13 84.3 12.8 148 22-201 26-198 (338)
45 3cf0_A Transitional endoplasmi 99.0 2.4E-08 8.2E-13 78.8 16.7 157 22-202 12-201 (301)
46 1sxj_C Activator 1 40 kDa subu 99.0 7.9E-09 2.7E-13 82.9 13.1 155 23-200 23-182 (340)
47 3n70_A Transport activator; si 99.0 1E-09 3.4E-14 77.3 6.5 47 26-73 2-48 (145)
48 2zan_A Vacuolar protein sortin 99.0 2.3E-08 7.8E-13 83.1 15.6 172 21-215 130-331 (444)
49 3b9p_A CG5977-PA, isoform A; A 99.0 4.1E-08 1.4E-12 77.1 16.0 55 20-74 16-79 (297)
50 1r6b_X CLPA protein; AAA+, N-t 99.0 7.8E-09 2.7E-13 91.4 13.1 152 24-200 185-362 (758)
51 3ec2_A DNA replication protein 98.9 3.6E-09 1.2E-13 77.1 8.9 45 30-74 19-63 (180)
52 2r62_A Cell division protease 98.9 5.4E-09 1.8E-13 80.9 9.4 158 22-203 8-199 (268)
53 1ojl_A Transcriptional regulat 98.9 1.6E-08 5.6E-13 79.8 12.2 49 25-74 2-50 (304)
54 4b4t_L 26S protease subunit RP 98.9 7.3E-08 2.5E-12 79.4 16.0 169 22-215 178-381 (437)
55 1a5t_A Delta prime, HOLB; zinc 98.9 5.2E-08 1.8E-12 77.9 14.9 162 27-200 4-180 (334)
56 3pxi_A Negative regulator of g 98.9 1.3E-08 4.5E-13 89.9 12.3 148 24-201 179-339 (758)
57 4b4t_H 26S protease regulatory 98.9 5.6E-08 1.9E-12 80.2 15.0 168 23-215 207-409 (467)
58 2bjv_A PSP operon transcriptio 98.9 7.8E-09 2.7E-13 79.9 9.3 50 24-74 5-54 (265)
59 4fcw_A Chaperone protein CLPB; 98.9 1.7E-08 5.7E-13 79.7 10.2 53 24-76 16-74 (311)
60 4b4t_M 26S protease regulatory 98.8 2.2E-08 7.5E-13 82.4 11.2 171 20-215 176-381 (434)
61 3t15_A Ribulose bisphosphate c 98.8 2.3E-08 7.8E-13 78.6 10.7 28 47-74 34-61 (293)
62 1lv7_A FTSH; alpha/beta domain 98.8 2.7E-08 9.2E-13 76.6 10.9 158 21-202 8-197 (257)
63 4b4t_I 26S protease regulatory 98.8 5.2E-08 1.8E-12 79.6 12.5 169 22-215 179-382 (437)
64 2ce7_A Cell division protein F 98.8 1.5E-07 5.1E-12 78.5 14.7 158 22-203 13-202 (476)
65 3cf2_A TER ATPase, transitiona 98.8 6.6E-08 2.3E-12 85.1 13.1 167 24-215 203-401 (806)
66 3pxi_A Negative regulator of g 98.8 3.3E-08 1.1E-12 87.4 11.1 149 25-200 491-675 (758)
67 4b4t_K 26S protease regulatory 98.8 8.4E-08 2.9E-12 78.9 12.7 55 22-76 169-233 (428)
68 1ofh_A ATP-dependent HSL prote 98.8 4.1E-08 1.4E-12 77.3 10.4 51 24-74 14-75 (310)
69 2gno_A DNA polymerase III, gam 98.8 6.2E-08 2.1E-12 76.5 11.3 146 29-200 1-152 (305)
70 3co5_A Putative two-component 98.7 2.5E-09 8.5E-14 75.1 2.0 48 26-74 5-52 (143)
71 1ixz_A ATP-dependent metallopr 98.7 3.7E-07 1.3E-11 70.0 13.5 158 22-203 13-202 (254)
72 2kjq_A DNAA-related protein; s 98.7 3.2E-08 1.1E-12 69.9 6.2 36 48-83 35-70 (149)
73 1iy2_A ATP-dependent metallopr 98.7 9.2E-07 3.1E-11 68.8 14.6 160 20-203 35-226 (278)
74 2w58_A DNAI, primosome compone 98.6 2.8E-07 9.5E-12 68.2 10.2 62 22-83 22-88 (202)
75 2dhr_A FTSH; AAA+ protein, hex 98.6 6.4E-07 2.2E-11 75.2 12.5 155 20-202 26-216 (499)
76 1ypw_A Transitional endoplasmi 98.6 1.6E-06 5.5E-11 77.0 15.1 156 23-203 202-388 (806)
77 3m6a_A ATP-dependent protease 98.5 1.5E-06 5.1E-11 74.0 13.3 51 26-76 82-135 (543)
78 2x8a_A Nuclear valosin-contain 98.5 6.4E-06 2.2E-10 64.0 15.9 154 24-201 9-192 (274)
79 2c9o_A RUVB-like 1; hexameric 98.4 7.5E-07 2.6E-11 74.2 9.3 53 23-75 35-89 (456)
80 1r6b_X CLPA protein; AAA+, N-t 98.4 1.3E-06 4.3E-11 77.3 11.1 49 25-73 458-512 (758)
81 1um8_A ATP-dependent CLP prote 98.4 3.7E-07 1.3E-11 74.1 6.7 50 25-74 21-97 (376)
82 1qvr_A CLPB protein; coiled co 98.4 1.4E-06 4.7E-11 78.0 10.6 51 25-75 558-614 (854)
83 2qgz_A Helicase loader, putati 98.4 1.3E-06 4.4E-11 69.0 8.7 62 22-83 121-187 (308)
84 3nbx_X ATPase RAVA; AAA+ ATPas 98.3 1.7E-06 5.8E-11 72.7 7.1 45 25-74 22-66 (500)
85 3cf2_A TER ATPase, transitiona 98.2 2.8E-06 9.6E-11 74.9 8.0 155 25-203 477-664 (806)
86 2cvh_A DNA repair and recombin 98.1 7.2E-06 2.5E-10 61.1 7.5 44 36-83 8-51 (220)
87 2vhj_A Ntpase P4, P4; non- hyd 98.0 6.9E-06 2.4E-10 64.8 5.2 25 48-72 122-146 (331)
88 1u0j_A DNA replication protein 97.9 8.1E-05 2.8E-09 57.2 10.3 36 37-73 93-128 (267)
89 2r44_A Uncharacterized protein 97.9 5.3E-06 1.8E-10 66.0 3.9 49 23-76 25-73 (331)
90 3hr8_A Protein RECA; alpha and 97.9 1.1E-05 3.7E-10 64.8 5.6 101 31-142 43-149 (356)
91 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.4E-05 4.7E-10 60.0 5.9 48 35-83 10-57 (235)
92 1in4_A RUVB, holliday junction 97.9 8.5E-06 2.9E-10 65.0 4.8 52 23-74 23-76 (334)
93 2b8t_A Thymidine kinase; deoxy 97.9 1.8E-05 6.2E-10 59.4 6.3 113 47-170 10-126 (223)
94 1ypw_A Transitional endoplasmi 97.9 3.1E-06 1.1E-10 75.2 2.4 53 24-76 476-538 (806)
95 1rz3_A Hypothetical protein rb 97.9 1.8E-05 6.1E-10 58.4 6.2 46 29-74 2-47 (201)
96 1g5t_A COB(I)alamin adenosyltr 97.9 5.4E-06 1.8E-10 60.7 3.0 36 49-84 28-63 (196)
97 3bh0_A DNAB-like replicative h 97.9 0.00019 6.6E-09 56.7 11.9 49 33-83 54-102 (315)
98 3hws_A ATP-dependent CLP prote 97.9 1.6E-05 5.3E-10 64.2 5.6 49 26-74 16-76 (363)
99 3jvv_A Twitching mobility prot 97.9 3.4E-05 1.2E-09 62.0 7.1 111 49-173 123-234 (356)
100 3io5_A Recombination and repai 97.8 3.1E-05 1.1E-09 61.0 6.0 51 35-88 12-68 (333)
101 2orw_A Thymidine kinase; TMTK, 97.8 1.6E-05 5.6E-10 57.9 4.1 26 49-74 3-28 (184)
102 1g8p_A Magnesium-chelatase 38 97.8 1.2E-05 4E-10 64.3 3.4 50 22-74 21-70 (350)
103 3umf_A Adenylate kinase; rossm 97.8 0.00013 4.3E-09 54.6 8.7 27 47-73 27-53 (217)
104 1v5w_A DMC1, meiotic recombina 97.8 8.3E-05 2.8E-09 59.5 8.1 38 35-73 109-146 (343)
105 1ex7_A Guanylate kinase; subst 97.8 1.2E-05 4E-10 58.7 2.8 29 50-78 2-30 (186)
106 2zr9_A Protein RECA, recombina 97.8 2.1E-05 7.2E-10 63.1 4.4 53 31-84 43-96 (349)
107 4a1f_A DNAB helicase, replicat 97.8 0.00011 3.6E-09 58.7 8.4 53 29-83 28-80 (338)
108 1n0w_A DNA repair protein RAD5 97.7 2.4E-05 8.3E-10 59.1 4.3 36 36-72 12-47 (243)
109 1vma_A Cell division protein F 97.7 0.00027 9.1E-09 55.6 10.3 52 32-83 82-138 (306)
110 1qhx_A CPT, protein (chloramph 97.7 2.2E-05 7.6E-10 56.5 3.7 25 50-74 4-28 (178)
111 1xp8_A RECA protein, recombina 97.7 3E-05 1E-09 62.6 4.7 101 31-142 56-162 (366)
112 2z43_A DNA repair and recombin 97.7 4.1E-05 1.4E-09 60.8 5.2 39 35-74 94-132 (324)
113 3sr0_A Adenylate kinase; phosp 97.7 7.6E-05 2.6E-09 55.3 6.3 23 51-73 2-24 (206)
114 2q6t_A DNAB replication FORK h 97.7 0.00037 1.3E-08 57.7 11.0 48 34-83 187-235 (444)
115 1sky_E F1-ATPase, F1-ATP synth 97.7 0.0002 6.9E-09 59.3 9.0 39 50-89 152-191 (473)
116 1tue_A Replication protein E1; 97.7 5.1E-05 1.8E-09 55.9 4.8 42 31-74 42-83 (212)
117 3upu_A ATP-dependent DNA helic 97.7 0.00018 6.1E-09 59.9 8.7 54 20-77 16-73 (459)
118 3c8u_A Fructokinase; YP_612366 97.6 5.4E-05 1.9E-09 56.1 4.7 41 33-74 7-47 (208)
119 2r2a_A Uncharacterized protein 97.6 0.00016 5.3E-09 53.3 7.0 23 50-72 6-28 (199)
120 2r6a_A DNAB helicase, replicat 97.6 0.00048 1.6E-08 57.2 10.6 37 47-83 201-238 (454)
121 3e1s_A Exodeoxyribonuclease V, 97.6 0.00081 2.8E-08 57.5 12.1 34 50-83 205-238 (574)
122 3kb2_A SPBC2 prophage-derived 97.6 5E-05 1.7E-09 54.1 3.9 25 50-74 2-26 (173)
123 3uie_A Adenylyl-sulfate kinase 97.6 8.2E-05 2.8E-09 54.7 5.1 28 47-74 23-50 (200)
124 3dzd_A Transcriptional regulat 97.6 0.00056 1.9E-08 55.2 10.2 49 24-73 128-176 (368)
125 1u94_A RECA protein, recombina 97.6 5E-05 1.7E-09 61.1 3.8 53 31-84 45-98 (356)
126 2ewv_A Twitching motility prot 97.5 0.00041 1.4E-08 56.1 9.2 112 47-171 134-245 (372)
127 3vaa_A Shikimate kinase, SK; s 97.5 6.7E-05 2.3E-09 55.2 4.0 26 48-73 24-49 (199)
128 2i1q_A DNA repair and recombin 97.5 0.00011 3.9E-09 58.1 5.6 38 34-72 84-121 (322)
129 3bgw_A DNAB-like replicative h 97.5 0.00064 2.2E-08 56.3 10.1 48 34-83 184-231 (444)
130 1ny5_A Transcriptional regulat 97.5 0.001 3.5E-08 54.1 11.1 48 25-73 137-184 (387)
131 1nks_A Adenylate kinase; therm 97.5 0.0001 3.5E-09 53.5 4.7 27 50-76 2-28 (194)
132 1kgd_A CASK, peripheral plasma 97.5 6.4E-05 2.2E-09 54.4 3.6 27 48-74 4-30 (180)
133 3tau_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 55.7 3.6 27 48-74 7-33 (208)
134 3trf_A Shikimate kinase, SK; a 97.5 7.8E-05 2.7E-09 53.9 3.9 25 49-73 5-29 (185)
135 1zp6_A Hypothetical protein AT 97.5 7.1E-05 2.4E-09 54.4 3.6 26 47-72 7-32 (191)
136 3a00_A Guanylate kinase, GMP k 97.5 7.4E-05 2.5E-09 54.3 3.4 28 50-77 2-29 (186)
137 1q57_A DNA primase/helicase; d 97.5 0.00063 2.1E-08 57.2 9.4 37 47-83 240-277 (503)
138 3ney_A 55 kDa erythrocyte memb 97.4 8.6E-05 2.9E-09 54.6 3.6 28 47-74 17-44 (197)
139 2rhm_A Putative kinase; P-loop 97.4 9.8E-05 3.4E-09 53.7 4.0 26 48-73 4-29 (193)
140 2yvu_A Probable adenylyl-sulfa 97.4 0.00014 4.7E-09 52.7 4.7 29 47-75 11-39 (186)
141 1gvn_B Zeta; postsegregational 97.4 0.00019 6.5E-09 56.0 5.8 27 47-73 31-57 (287)
142 1ly1_A Polynucleotide kinase; 97.4 9.2E-05 3.2E-09 53.1 3.7 22 50-71 3-24 (181)
143 3k1j_A LON protease, ATP-depen 97.4 0.00015 5E-09 62.5 5.4 48 23-75 39-86 (604)
144 1kht_A Adenylate kinase; phosp 97.4 9.8E-05 3.4E-09 53.5 3.6 26 50-75 4-29 (192)
145 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 54.2 3.7 26 48-73 6-31 (205)
146 1kag_A SKI, shikimate kinase I 97.4 7.9E-05 2.7E-09 53.2 3.0 24 50-73 5-28 (173)
147 4eun_A Thermoresistant glucoki 97.4 0.00011 3.8E-09 54.0 3.8 27 47-73 27-53 (200)
148 1jr3_D DNA polymerase III, del 97.4 0.0027 9.3E-08 50.5 12.0 128 48-201 17-156 (343)
149 3lw7_A Adenylate kinase relate 97.4 0.00011 3.6E-09 52.4 3.4 22 50-72 2-23 (179)
150 3iij_A Coilin-interacting nucl 97.4 0.00011 3.6E-09 53.0 3.4 25 49-73 11-35 (180)
151 2fz4_A DNA repair protein RAD2 97.4 0.0034 1.2E-07 47.4 11.8 40 28-73 93-132 (237)
152 2qor_A Guanylate kinase; phosp 97.4 9.1E-05 3.1E-09 54.6 3.0 28 47-74 10-37 (204)
153 1knq_A Gluconate kinase; ALFA/ 97.4 0.00016 5.4E-09 51.8 4.2 27 47-73 6-32 (175)
154 1pzn_A RAD51, DNA repair and r 97.4 0.00028 9.5E-09 56.6 5.8 38 36-74 119-156 (349)
155 3ice_A Transcription terminati 97.4 0.00024 8.1E-09 57.5 5.3 42 47-88 172-214 (422)
156 3cm0_A Adenylate kinase; ATP-b 97.4 0.00016 5.4E-09 52.3 4.1 25 49-73 4-28 (186)
157 2plr_A DTMP kinase, probable t 97.3 0.00026 8.7E-09 52.2 5.3 28 49-76 4-31 (213)
158 3t61_A Gluconokinase; PSI-biol 97.3 0.0001 3.4E-09 54.3 2.9 25 49-73 18-42 (202)
159 1nn5_A Similar to deoxythymidy 97.3 0.00019 6.5E-09 53.1 4.4 29 48-76 8-36 (215)
160 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.0006 2.1E-08 54.2 7.5 134 49-199 171-309 (330)
161 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.1E-09 53.3 3.7 26 48-73 5-30 (207)
162 1odf_A YGR205W, hypothetical 3 97.3 0.00033 1.1E-08 54.7 5.9 29 47-75 29-57 (290)
163 3tlx_A Adenylate kinase 2; str 97.3 0.00021 7E-09 54.3 4.6 27 47-73 27-53 (243)
164 1tev_A UMP-CMP kinase; ploop, 97.3 0.00017 5.7E-09 52.4 3.9 25 49-73 3-27 (196)
165 2c95_A Adenylate kinase 1; tra 97.3 0.00016 5.5E-09 52.7 3.7 25 49-73 9-33 (196)
166 2ze6_A Isopentenyl transferase 97.3 0.00019 6.6E-09 54.9 4.1 25 50-74 2-26 (253)
167 1y63_A LMAJ004144AAA protein; 97.3 0.00018 6.2E-09 52.1 3.8 25 48-72 9-33 (184)
168 2vli_A Antibiotic resistance p 97.3 0.00011 3.6E-09 53.1 2.5 26 49-74 5-30 (183)
169 1g41_A Heat shock protein HSLU 97.3 0.00022 7.4E-09 58.9 4.6 52 25-76 15-77 (444)
170 1lvg_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 53.8 2.8 26 49-74 4-29 (198)
171 2cdn_A Adenylate kinase; phosp 97.3 0.0002 6.8E-09 52.6 4.0 27 47-73 18-44 (201)
172 3cmu_A Protein RECA, recombina 97.3 0.00015 5.1E-09 69.5 4.0 37 47-83 1425-1461(2050)
173 1s96_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 54.0 3.6 28 47-74 14-41 (219)
174 3lda_A DNA repair protein RAD5 97.3 0.00029 9.9E-09 57.5 5.1 37 34-71 164-200 (400)
175 3kl4_A SRP54, signal recogniti 97.3 0.00085 2.9E-08 55.2 7.9 36 48-83 96-131 (433)
176 4akg_A Glutathione S-transfera 97.3 0.0016 5.4E-08 64.4 10.9 147 49-217 1267-1448(2695)
177 1ukz_A Uridylate kinase; trans 97.3 0.00023 7.9E-09 52.3 4.1 27 47-73 13-39 (203)
178 1ye8_A Protein THEP1, hypothet 97.3 0.00018 6.1E-09 52.0 3.4 24 51-74 2-25 (178)
179 2jaq_A Deoxyguanosine kinase; 97.3 0.00019 6.7E-09 52.5 3.7 24 51-74 2-25 (205)
180 2px0_A Flagellar biosynthesis 97.3 0.00093 3.2E-08 52.3 7.7 37 47-83 103-140 (296)
181 1via_A Shikimate kinase; struc 97.3 0.00019 6.6E-09 51.4 3.5 24 51-74 6-29 (175)
182 2iyv_A Shikimate kinase, SK; t 97.2 0.00016 5.5E-09 52.2 3.1 24 50-73 3-26 (184)
183 1aky_A Adenylate kinase; ATP:A 97.2 0.00022 7.7E-09 53.1 3.8 27 48-74 3-29 (220)
184 3asz_A Uridine kinase; cytidin 97.2 0.00021 7.3E-09 52.8 3.6 28 47-74 4-31 (211)
185 2bwj_A Adenylate kinase 5; pho 97.2 0.00019 6.6E-09 52.3 3.4 25 50-74 13-37 (199)
186 2wwf_A Thymidilate kinase, put 97.2 0.00021 7.3E-09 52.7 3.6 28 48-75 9-36 (212)
187 2xxa_A Signal recognition part 97.2 0.0059 2E-07 50.3 12.4 51 33-83 78-135 (433)
188 2dr3_A UPF0273 protein PH0284; 97.2 0.00031 1.1E-08 52.9 4.6 37 47-83 21-57 (247)
189 3tqc_A Pantothenate kinase; bi 97.2 0.0004 1.4E-08 55.0 5.2 48 27-74 69-117 (321)
190 1znw_A Guanylate kinase, GMP k 97.2 0.00022 7.6E-09 52.7 3.6 27 47-73 18-44 (207)
191 1zu4_A FTSY; GTPase, signal re 97.2 0.0012 4E-08 52.3 7.9 37 47-83 103-139 (320)
192 2bdt_A BH3686; alpha-beta prot 97.2 0.00024 8.3E-09 51.5 3.7 22 50-71 3-24 (189)
193 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.7E-09 51.1 3.1 24 50-73 3-26 (173)
194 1zuh_A Shikimate kinase; alpha 97.2 0.00028 9.7E-09 50.1 3.9 26 49-74 7-32 (168)
195 2p5t_B PEZT; postsegregational 97.2 0.0004 1.4E-08 53.0 5.0 28 47-74 30-57 (253)
196 1z6g_A Guanylate kinase; struc 97.2 0.00019 6.7E-09 53.5 3.0 27 47-73 21-47 (218)
197 1qf9_A UMP/CMP kinase, protein 97.2 0.00027 9.2E-09 51.2 3.7 25 49-73 6-30 (194)
198 1cke_A CK, MSSA, protein (cyti 97.2 0.00025 8.6E-09 52.9 3.6 24 50-73 6-29 (227)
199 2ck3_D ATP synthase subunit be 97.2 0.0023 7.9E-08 53.0 9.5 55 47-105 151-206 (482)
200 1xjc_A MOBB protein homolog; s 97.2 0.00039 1.3E-08 49.8 4.3 28 49-76 4-31 (169)
201 2pt5_A Shikimate kinase, SK; a 97.2 0.00031 1.1E-08 49.8 3.9 24 51-74 2-25 (168)
202 4gp7_A Metallophosphoesterase; 97.2 0.00021 7.1E-09 51.2 2.8 23 48-70 8-30 (171)
203 3dm5_A SRP54, signal recogniti 97.2 0.001 3.5E-08 54.8 7.2 36 48-83 99-134 (443)
204 2pbr_A DTMP kinase, thymidylat 97.1 0.0003 1E-08 51.1 3.6 24 51-74 2-25 (195)
205 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00031 1.1E-08 53.9 3.8 26 49-74 4-29 (260)
206 2v54_A DTMP kinase, thymidylat 97.1 0.00029 9.9E-09 51.6 3.6 25 49-73 4-28 (204)
207 2bbw_A Adenylate kinase 4, AK4 97.1 0.0003 1E-08 53.4 3.8 25 49-73 27-51 (246)
208 3fb4_A Adenylate kinase; psych 97.1 0.0003 1E-08 52.2 3.6 23 51-73 2-24 (216)
209 1zd8_A GTP:AMP phosphotransfer 97.1 0.00025 8.6E-09 53.1 3.2 25 49-73 7-31 (227)
210 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.7E-09 52.9 3.2 27 48-74 4-30 (222)
211 2pez_A Bifunctional 3'-phospho 97.1 0.0004 1.4E-08 50.0 4.1 28 47-74 3-30 (179)
212 4a74_A DNA repair and recombin 97.1 0.00028 9.4E-09 52.7 3.3 27 47-73 23-49 (231)
213 1htw_A HI0065; nucleotide-bind 97.1 0.00039 1.3E-08 49.2 3.9 27 47-73 31-57 (158)
214 2qt1_A Nicotinamide riboside k 97.1 0.00032 1.1E-08 51.7 3.6 27 47-73 19-45 (207)
215 2ehv_A Hypothetical protein PH 97.1 0.00037 1.3E-08 52.7 4.0 25 47-71 28-52 (251)
216 3llm_A ATP-dependent RNA helic 97.1 0.0048 1.6E-07 46.3 10.1 22 50-71 77-98 (235)
217 1uf9_A TT1252 protein; P-loop, 97.1 0.00036 1.2E-08 51.0 3.8 26 47-72 6-31 (203)
218 3dl0_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 52.1 3.4 23 51-73 2-24 (216)
219 2hf9_A Probable hydrogenase ni 97.1 0.0011 3.6E-08 49.4 6.3 42 31-75 23-64 (226)
220 2z0h_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 50.8 3.7 25 51-75 2-26 (197)
221 1m7g_A Adenylylsulfate kinase; 97.1 0.00043 1.5E-08 51.2 4.1 28 47-74 23-50 (211)
222 1j8m_F SRP54, signal recogniti 97.1 0.0033 1.1E-07 49.2 9.3 35 49-83 98-132 (297)
223 1uj2_A Uridine-cytidine kinase 97.1 0.00041 1.4E-08 52.9 4.0 28 47-74 20-47 (252)
224 4e22_A Cytidylate kinase; P-lo 97.1 0.00038 1.3E-08 53.1 3.8 26 48-73 26-51 (252)
225 2jeo_A Uridine-cytidine kinase 97.1 0.00042 1.4E-08 52.6 4.0 27 47-73 23-49 (245)
226 2eyu_A Twitching motility prot 97.1 0.00058 2E-08 52.5 4.8 112 47-171 23-134 (261)
227 1rj9_A FTSY, signal recognitio 97.1 0.00061 2.1E-08 53.5 5.0 28 48-75 101-128 (304)
228 2j9r_A Thymidine kinase; TK1, 97.1 0.0013 4.3E-08 48.8 6.3 112 47-171 26-139 (214)
229 1gtv_A TMK, thymidylate kinase 97.1 0.00023 7.8E-09 52.6 2.4 25 51-75 2-26 (214)
230 2if2_A Dephospho-COA kinase; a 97.0 0.00035 1.2E-08 51.3 3.2 21 51-71 3-23 (204)
231 1sq5_A Pantothenate kinase; P- 97.0 0.00072 2.5E-08 53.2 5.1 28 47-74 78-105 (308)
232 3a8t_A Adenylate isopentenyltr 97.0 0.0004 1.4E-08 55.2 3.5 27 48-74 39-65 (339)
233 1jjv_A Dephospho-COA kinase; P 97.0 0.00042 1.4E-08 51.0 3.5 22 50-71 3-24 (206)
234 2zts_A Putative uncharacterize 97.0 0.00087 3E-08 50.6 5.3 37 47-83 28-65 (251)
235 2wsm_A Hydrogenase expression/ 97.0 0.00085 2.9E-08 49.8 5.1 43 31-76 15-57 (221)
236 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.4E-09 53.6 1.9 26 48-73 26-52 (231)
237 3exa_A TRNA delta(2)-isopenten 97.0 0.00049 1.7E-08 54.1 3.8 25 49-73 3-27 (322)
238 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00075 2.6E-08 54.0 5.0 30 47-76 22-51 (359)
239 3aez_A Pantothenate kinase; tr 97.0 0.00051 1.7E-08 54.2 4.0 28 47-74 88-115 (312)
240 1w36_D RECD, exodeoxyribonucle 97.0 0.0027 9.2E-08 54.7 8.7 26 49-74 164-189 (608)
241 1fx0_B ATP synthase beta chain 97.0 0.0033 1.1E-07 52.3 8.8 55 47-105 163-218 (498)
242 1ak2_A Adenylate kinase isoenz 97.0 0.00058 2E-08 51.4 4.0 27 48-74 15-41 (233)
243 3e70_C DPA, signal recognition 97.0 0.00092 3.1E-08 53.1 5.2 30 47-76 127-156 (328)
244 3b9q_A Chloroplast SRP recepto 97.0 0.00083 2.9E-08 52.7 4.8 28 47-74 98-125 (302)
245 2qmh_A HPR kinase/phosphorylas 97.0 0.0005 1.7E-08 50.4 3.3 25 49-73 34-58 (205)
246 4eaq_A DTMP kinase, thymidylat 96.9 0.0012 4.1E-08 49.6 5.4 29 47-75 24-52 (229)
247 3tif_A Uncharacterized ABC tra 96.9 0.00047 1.6E-08 52.1 3.1 25 47-71 29-53 (235)
248 2xb4_A Adenylate kinase; ATP-b 96.9 0.0006 2.1E-08 51.0 3.6 23 51-73 2-24 (223)
249 3crm_A TRNA delta(2)-isopenten 96.9 0.00061 2.1E-08 53.9 3.7 24 50-73 6-29 (323)
250 3nwj_A ATSK2; P loop, shikimat 96.9 0.00053 1.8E-08 52.4 3.3 26 49-74 48-73 (250)
251 3be4_A Adenylate kinase; malar 96.9 0.00052 1.8E-08 51.1 3.2 25 49-73 5-29 (217)
252 3p32_A Probable GTPase RV1496/ 96.9 0.0022 7.4E-08 51.5 7.0 30 47-76 77-106 (355)
253 3foz_A TRNA delta(2)-isopenten 96.9 0.00076 2.6E-08 52.9 4.2 26 48-73 9-34 (316)
254 3fwy_A Light-independent proto 96.9 0.0011 3.7E-08 52.3 5.2 39 47-85 46-84 (314)
255 1np6_A Molybdopterin-guanine d 96.9 0.0009 3.1E-08 48.1 4.3 27 49-75 6-32 (174)
256 1cr0_A DNA primase/helicase; R 96.9 0.00082 2.8E-08 52.4 4.4 37 47-83 33-70 (296)
257 3r20_A Cytidylate kinase; stru 96.9 0.00066 2.3E-08 51.2 3.7 25 49-73 9-33 (233)
258 1vht_A Dephospho-COA kinase; s 96.9 0.00076 2.6E-08 50.1 4.0 23 49-71 4-26 (218)
259 1g8f_A Sulfate adenylyltransfe 96.9 0.0009 3.1E-08 56.2 4.8 49 26-75 373-421 (511)
260 2yhs_A FTSY, cell division pro 96.9 0.0017 5.7E-08 54.3 6.2 29 47-75 291-319 (503)
261 1e4v_A Adenylate kinase; trans 96.9 0.00064 2.2E-08 50.4 3.4 23 51-73 2-24 (214)
262 4b3f_X DNA-binding protein smu 96.9 0.003 1E-07 54.8 8.0 38 31-73 192-229 (646)
263 2cbz_A Multidrug resistance-as 96.9 0.00059 2E-08 51.7 3.1 27 47-73 29-55 (237)
264 3d3q_A TRNA delta(2)-isopenten 96.9 0.00078 2.7E-08 53.6 3.8 25 50-74 8-32 (340)
265 2ck3_A ATP synthase subunit al 96.9 0.0038 1.3E-07 52.1 8.1 28 47-74 160-188 (510)
266 2ged_A SR-beta, signal recogni 96.9 0.00087 3E-08 48.4 3.9 26 47-72 46-71 (193)
267 2r8r_A Sensor protein; KDPD, P 96.9 0.0011 3.7E-08 49.6 4.4 33 51-83 8-40 (228)
268 2grj_A Dephospho-COA kinase; T 96.8 0.00083 2.8E-08 49.1 3.7 26 48-73 11-36 (192)
269 3ake_A Cytidylate kinase; CMP 96.8 0.00081 2.8E-08 49.3 3.7 24 51-74 4-27 (208)
270 2pcj_A ABC transporter, lipopr 96.8 0.00047 1.6E-08 51.7 2.3 24 48-71 29-52 (224)
271 1b0u_A Histidine permease; ABC 96.8 0.00064 2.2E-08 52.2 3.0 25 47-71 30-54 (262)
272 1c9k_A COBU, adenosylcobinamid 96.8 0.00048 1.6E-08 49.8 2.1 28 52-83 2-29 (180)
273 4edh_A DTMP kinase, thymidylat 96.8 0.0016 5.6E-08 48.4 5.1 29 48-76 5-33 (213)
274 2v9p_A Replication protein E1; 96.8 0.0008 2.7E-08 52.8 3.6 27 47-73 124-150 (305)
275 1mv5_A LMRA, multidrug resista 96.8 0.00077 2.6E-08 51.2 3.3 25 47-71 26-50 (243)
276 2i3b_A HCR-ntpase, human cance 96.8 0.00069 2.4E-08 49.4 3.0 24 51-74 3-26 (189)
277 2f6r_A COA synthase, bifunctio 96.8 0.00089 3E-08 52.0 3.7 25 47-71 73-97 (281)
278 2og2_A Putative signal recogni 96.8 0.0013 4.5E-08 52.8 4.8 28 47-74 155-182 (359)
279 3l0o_A Transcription terminati 96.8 0.0011 3.9E-08 53.5 4.3 50 37-88 165-215 (427)
280 1nlf_A Regulatory protein REPA 96.8 0.0012 4.2E-08 51.0 4.5 28 47-74 28-55 (279)
281 1ltq_A Polynucleotide kinase; 96.8 0.0009 3.1E-08 52.2 3.7 23 50-72 3-25 (301)
282 2onk_A Molybdate/tungstate ABC 96.8 0.00083 2.8E-08 50.9 3.4 23 50-72 25-47 (240)
283 3b6e_A Interferon-induced heli 96.8 0.0016 5.4E-08 47.9 4.8 39 28-72 33-71 (216)
284 2zu0_C Probable ATP-dependent 96.8 0.0009 3.1E-08 51.6 3.6 26 47-72 44-69 (267)
285 2qe7_A ATP synthase subunit al 96.8 0.0053 1.8E-07 51.2 8.2 40 47-88 160-200 (502)
286 2olj_A Amino acid ABC transpor 96.8 0.00078 2.7E-08 51.8 3.0 26 47-72 48-73 (263)
287 1svm_A Large T antigen; AAA+ f 96.7 0.0016 5.6E-08 52.7 4.9 27 47-73 167-193 (377)
288 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00083 2.9E-08 51.2 3.1 25 48-72 28-52 (250)
289 1a7j_A Phosphoribulokinase; tr 96.7 0.00052 1.8E-08 53.5 2.0 27 48-74 4-30 (290)
290 3cmw_A Protein RECA, recombina 96.7 0.00091 3.1E-08 63.4 3.8 99 34-143 368-472 (1706)
291 2ghi_A Transport protein; mult 96.7 0.00085 2.9E-08 51.5 3.1 26 47-72 44-69 (260)
292 1vpl_A ABC transporter, ATP-bi 96.7 0.00085 2.9E-08 51.4 3.0 25 47-71 39-63 (256)
293 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00093 3.2E-08 53.6 3.4 25 47-71 28-52 (359)
294 3oaa_A ATP synthase subunit al 96.7 0.0065 2.2E-07 50.6 8.4 88 47-142 160-264 (513)
295 2ixe_A Antigen peptide transpo 96.7 0.00086 2.9E-08 51.8 3.1 26 47-72 43-68 (271)
296 1g6h_A High-affinity branched- 96.7 0.0007 2.4E-08 51.9 2.6 25 47-71 31-55 (257)
297 1yrb_A ATP(GTP)binding protein 96.7 0.003 1E-07 48.0 6.1 36 47-83 12-47 (262)
298 1ji0_A ABC transporter; ATP bi 96.7 0.00072 2.5E-08 51.2 2.6 25 47-71 30-54 (240)
299 2pze_A Cystic fibrosis transme 96.7 0.00072 2.5E-08 50.9 2.5 27 47-73 32-58 (229)
300 3zvl_A Bifunctional polynucleo 96.7 0.00097 3.3E-08 54.8 3.4 27 47-73 256-282 (416)
301 2f1r_A Molybdopterin-guanine d 96.7 0.00065 2.2E-08 48.7 2.1 27 50-76 3-29 (171)
302 2ff7_A Alpha-hemolysin translo 96.7 0.00076 2.6E-08 51.4 2.6 25 48-72 34-58 (247)
303 3ld9_A DTMP kinase, thymidylat 96.7 0.0038 1.3E-07 46.7 6.3 29 47-75 19-47 (223)
304 3gfo_A Cobalt import ATP-bindi 96.7 0.00074 2.5E-08 52.3 2.4 25 47-71 32-56 (275)
305 2ffh_A Protein (FFH); SRP54, s 96.7 0.0067 2.3E-07 49.8 8.2 36 48-83 97-132 (425)
306 2yz2_A Putative ABC transporte 96.7 0.00097 3.3E-08 51.3 3.1 25 47-71 31-55 (266)
307 1sgw_A Putative ABC transporte 96.7 0.00063 2.2E-08 50.6 2.0 25 48-72 34-58 (214)
308 3b85_A Phosphate starvation-in 96.7 0.0008 2.7E-08 49.9 2.5 23 50-72 23-45 (208)
309 2j37_W Signal recognition part 96.7 0.0081 2.8E-07 50.4 8.8 36 48-83 100-135 (504)
310 3eph_A TRNA isopentenyltransfe 96.7 0.0013 4.5E-08 53.5 3.8 25 50-74 3-27 (409)
311 4g1u_C Hemin import ATP-bindin 96.7 0.00094 3.2E-08 51.4 2.9 25 47-71 35-59 (266)
312 3f9v_A Minichromosome maintena 96.6 0.00053 1.8E-08 58.9 1.5 50 24-73 294-351 (595)
313 2yyz_A Sugar ABC transporter, 96.6 0.0012 4.2E-08 53.0 3.6 25 47-71 27-51 (359)
314 3cmu_A Protein RECA, recombina 96.6 0.0011 3.6E-08 63.9 3.6 101 31-142 365-471 (2050)
315 3cr8_A Sulfate adenylyltranfer 96.6 0.0016 5.4E-08 55.4 4.4 29 47-75 367-395 (552)
316 3vkw_A Replicase large subunit 96.6 0.014 4.7E-07 48.1 9.8 25 47-71 159-183 (446)
317 2it1_A 362AA long hypothetical 96.6 0.0013 4.3E-08 53.0 3.6 25 47-71 27-51 (362)
318 3rlf_A Maltose/maltodextrin im 96.6 0.0013 4.3E-08 53.3 3.6 25 47-71 27-51 (381)
319 2ocp_A DGK, deoxyguanosine kin 96.6 0.0014 4.7E-08 49.5 3.6 26 49-74 2-27 (241)
320 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.5E-08 49.0 3.9 27 47-73 14-40 (236)
321 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.7E-08 50.6 2.9 26 48-73 25-50 (249)
322 1v43_A Sugar-binding transport 96.6 0.0013 4.5E-08 53.1 3.6 25 47-71 35-59 (372)
323 4hlc_A DTMP kinase, thymidylat 96.6 0.0025 8.6E-08 47.0 4.8 28 50-77 3-30 (205)
324 3tqf_A HPR(Ser) kinase; transf 96.6 0.0016 5.6E-08 46.5 3.6 24 49-72 16-39 (181)
325 2yv5_A YJEQ protein; hydrolase 96.6 0.002 7E-08 50.5 4.5 33 34-73 156-188 (302)
326 3d31_A Sulfate/molybdate ABC t 96.6 0.0011 3.8E-08 53.0 3.0 25 47-71 24-48 (348)
327 1z47_A CYSA, putative ABC-tran 96.6 0.0011 3.9E-08 53.1 3.1 25 47-71 39-63 (355)
328 2r9v_A ATP synthase subunit al 96.6 0.0048 1.7E-07 51.5 6.8 39 48-88 174-213 (515)
329 2v3c_C SRP54, signal recogniti 96.6 0.0016 5.5E-08 53.7 4.0 35 49-83 99-133 (432)
330 2nq2_C Hypothetical ABC transp 96.6 0.00098 3.3E-08 50.9 2.5 26 48-73 30-55 (253)
331 3end_A Light-independent proto 96.6 0.0027 9.2E-08 49.7 5.2 38 47-84 39-76 (307)
332 2ihy_A ABC transporter, ATP-bi 96.6 0.00097 3.3E-08 51.7 2.5 26 47-72 45-70 (279)
333 2f9l_A RAB11B, member RAS onco 96.6 0.0014 4.8E-08 47.7 3.3 23 50-72 6-28 (199)
334 1oix_A RAS-related protein RAB 96.6 0.0013 4.4E-08 47.7 3.0 23 50-72 30-52 (191)
335 2wji_A Ferrous iron transport 96.6 0.0018 6.2E-08 45.7 3.7 22 50-71 4-25 (165)
336 1p9r_A General secretion pathw 96.6 0.003 1E-07 51.9 5.4 30 47-76 165-194 (418)
337 3cmw_A Protein RECA, recombina 96.6 0.0018 6.2E-08 61.5 4.5 90 47-142 1429-1519(1706)
338 3vr4_D V-type sodium ATPase su 96.5 0.0057 2E-07 50.4 6.9 53 49-104 151-206 (465)
339 2zej_A Dardarin, leucine-rich 96.5 0.0012 3.9E-08 47.6 2.6 21 51-71 4-24 (184)
340 2vp4_A Deoxynucleoside kinase; 96.5 0.0011 3.8E-08 49.7 2.5 26 47-72 18-43 (230)
341 2gks_A Bifunctional SAT/APS ki 96.5 0.0037 1.2E-07 53.1 5.9 48 27-75 351-398 (546)
342 1g29_1 MALK, maltose transport 96.5 0.0013 4.5E-08 53.1 3.1 24 48-71 28-51 (372)
343 1oxx_K GLCV, glucose, ABC tran 96.5 0.0011 3.7E-08 53.2 2.5 25 47-71 29-53 (353)
344 1ls1_A Signal recognition part 96.5 0.003 1E-07 49.3 4.9 36 48-83 97-132 (295)
345 3kta_A Chromosome segregation 96.5 0.0016 5.5E-08 46.7 3.1 24 50-73 27-50 (182)
346 2c61_A A-type ATP synthase non 96.5 0.007 2.4E-07 50.1 7.1 27 48-74 151-177 (469)
347 2dyk_A GTP-binding protein; GT 96.5 0.0022 7.5E-08 44.6 3.7 23 50-72 2-24 (161)
348 3tui_C Methionine import ATP-b 96.5 0.0018 6.2E-08 52.0 3.6 25 47-71 52-76 (366)
349 2bbs_A Cystic fibrosis transme 96.5 0.0014 4.8E-08 51.1 2.8 27 47-73 62-88 (290)
350 3gd7_A Fusion complex of cysti 96.5 0.0017 5.8E-08 52.8 3.4 25 47-71 45-69 (390)
351 3vkg_A Dynein heavy chain, cyt 96.5 0.0071 2.4E-07 60.6 8.1 153 48-217 1303-1486(3245)
352 3thx_A DNA mismatch repair pro 96.4 0.01 3.5E-07 53.5 8.5 24 47-70 660-683 (934)
353 2wjg_A FEOB, ferrous iron tran 96.4 0.0022 7.7E-08 46.0 3.6 24 48-71 6-29 (188)
354 3nh6_A ATP-binding cassette SU 96.4 0.0013 4.5E-08 51.7 2.5 25 47-71 78-102 (306)
355 1fx0_A ATP synthase alpha chai 96.4 0.0058 2E-07 51.0 6.4 40 47-88 161-201 (507)
356 3gqb_B V-type ATP synthase bet 96.4 0.006 2E-07 50.3 6.4 27 48-74 146-172 (464)
357 3sop_A Neuronal-specific septi 96.4 0.0019 6.4E-08 49.9 3.3 22 51-72 4-25 (270)
358 1tq4_A IIGP1, interferon-induc 96.4 0.0015 5E-08 53.5 2.8 24 48-71 68-91 (413)
359 1m8p_A Sulfate adenylyltransfe 96.4 0.0042 1.4E-07 53.1 5.7 28 47-74 394-421 (573)
360 4tmk_A Protein (thymidylate ki 96.4 0.0064 2.2E-07 45.1 6.0 28 49-76 3-30 (213)
361 3lv8_A DTMP kinase, thymidylat 96.4 0.003 1E-07 47.7 4.3 29 48-76 26-54 (236)
362 2qm8_A GTPase/ATPase; G protei 96.4 0.0042 1.4E-07 49.5 5.3 27 47-73 53-79 (337)
363 1p5z_B DCK, deoxycytidine kina 96.4 0.0011 3.8E-08 50.8 1.8 27 47-73 22-48 (263)
364 3v9p_A DTMP kinase, thymidylat 96.4 0.0023 7.9E-08 48.0 3.5 29 48-76 24-52 (227)
365 2pjz_A Hypothetical protein ST 96.4 0.0017 5.9E-08 49.9 2.8 25 49-73 30-54 (263)
366 1cp2_A CP2, nitrogenase iron p 96.4 0.0045 1.5E-07 47.3 5.1 35 50-84 2-36 (269)
367 2gk6_A Regulator of nonsense t 96.3 0.0097 3.3E-07 51.4 7.5 26 50-75 196-221 (624)
368 2lkc_A Translation initiation 96.3 0.0027 9.3E-08 45.0 3.5 25 47-71 6-30 (178)
369 1z2a_A RAS-related protein RAB 96.3 0.0025 8.6E-08 44.6 3.3 24 49-72 5-28 (168)
370 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.7E-08 47.4 3.0 24 50-73 4-27 (219)
371 1u0l_A Probable GTPase ENGC; p 96.3 0.0038 1.3E-07 48.9 4.4 24 50-73 170-193 (301)
372 3iqw_A Tail-anchored protein t 96.3 0.0061 2.1E-07 48.5 5.6 36 48-83 15-50 (334)
373 1nrj_B SR-beta, signal recogni 96.3 0.0032 1.1E-07 46.4 3.7 26 47-72 10-35 (218)
374 3io3_A DEHA2D07832P; chaperone 96.3 0.0055 1.9E-07 49.0 5.3 37 47-83 16-54 (348)
375 3tmk_A Thymidylate kinase; pho 96.3 0.0035 1.2E-07 46.7 3.9 28 48-75 4-31 (216)
376 2ce2_X GTPase HRAS; signaling 96.3 0.0026 8.8E-08 44.3 3.0 22 51-72 5-26 (166)
377 2gza_A Type IV secretion syste 96.2 0.0026 8.9E-08 51.2 3.3 35 49-84 175-209 (361)
378 2www_A Methylmalonic aciduria 96.2 0.0053 1.8E-07 49.1 5.1 26 48-73 73-98 (349)
379 1kao_A RAP2A; GTP-binding prot 96.2 0.003 1E-07 44.1 3.2 23 50-72 4-26 (167)
380 1z08_A RAS-related protein RAB 96.2 0.0031 1.1E-07 44.3 3.2 23 50-72 7-29 (170)
381 1lw7_A Transcriptional regulat 96.2 0.0031 1.1E-07 50.7 3.5 26 49-74 170-195 (365)
382 2p67_A LAO/AO transport system 96.2 0.0091 3.1E-07 47.6 6.2 27 47-73 54-80 (341)
383 2rcn_A Probable GTPase ENGC; Y 96.2 0.0048 1.6E-07 49.5 4.6 24 50-73 216-239 (358)
384 4gzl_A RAS-related C3 botulinu 96.2 0.0034 1.2E-07 45.9 3.5 23 49-71 30-52 (204)
385 1ek0_A Protein (GTP-binding pr 96.2 0.0032 1.1E-07 44.0 3.3 22 51-72 5-26 (170)
386 2nzj_A GTP-binding protein REM 96.2 0.0042 1.4E-07 43.8 3.8 22 50-71 5-26 (175)
387 1r8s_A ADP-ribosylation factor 96.2 0.0033 1.1E-07 43.9 3.3 21 52-72 3-23 (164)
388 1z0j_A RAB-22, RAS-related pro 96.2 0.0033 1.1E-07 44.1 3.2 23 50-72 7-29 (170)
389 3q85_A GTP-binding protein REM 96.2 0.0031 1.1E-07 44.2 3.1 21 51-71 4-24 (169)
390 3ihw_A Centg3; RAS, centaurin, 96.2 0.0032 1.1E-07 45.3 3.2 24 49-72 20-43 (184)
391 1c1y_A RAS-related protein RAP 96.2 0.0033 1.1E-07 43.9 3.3 23 50-72 4-26 (167)
392 2iut_A DNA translocase FTSK; n 96.2 0.098 3.4E-06 44.5 12.6 25 49-73 214-238 (574)
393 3hjn_A DTMP kinase, thymidylat 96.2 0.0053 1.8E-07 44.9 4.4 32 51-82 2-33 (197)
394 2gj8_A MNME, tRNA modification 96.2 0.0034 1.2E-07 44.6 3.3 23 50-72 5-27 (172)
395 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0034 1.2E-07 44.4 3.2 23 50-72 8-30 (177)
396 2erx_A GTP-binding protein DI- 96.2 0.0031 1.1E-07 44.2 3.0 22 50-71 4-25 (172)
397 2afh_E Nitrogenase iron protei 96.2 0.0057 2E-07 47.4 4.7 34 50-83 3-36 (289)
398 2axn_A 6-phosphofructo-2-kinas 96.1 0.0043 1.5E-07 52.4 4.2 27 48-74 34-60 (520)
399 2orv_A Thymidine kinase; TP4A 96.1 0.0055 1.9E-07 45.9 4.3 108 49-170 19-126 (234)
400 2cjw_A GTP-binding protein GEM 96.1 0.0035 1.2E-07 45.4 3.3 22 50-71 7-28 (192)
401 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0032 1.1E-07 45.1 3.0 24 49-72 7-30 (184)
402 1z0f_A RAB14, member RAS oncog 96.1 0.0045 1.5E-07 43.8 3.7 24 49-72 15-38 (179)
403 3bc1_A RAS-related protein RAB 96.1 0.0047 1.6E-07 44.3 3.9 23 49-71 11-33 (195)
404 3con_A GTPase NRAS; structural 96.1 0.0036 1.2E-07 45.0 3.3 23 50-72 22-44 (190)
405 1svi_A GTP-binding protein YSX 96.1 0.0045 1.6E-07 44.6 3.8 25 48-72 22-46 (195)
406 3kjh_A CO dehydrogenase/acetyl 96.1 0.0062 2.1E-07 45.8 4.7 33 52-84 3-35 (254)
407 1u8z_A RAS-related protein RAL 96.1 0.0055 1.9E-07 42.7 4.2 23 50-72 5-27 (168)
408 1r2q_A RAS-related protein RAB 96.1 0.0038 1.3E-07 43.7 3.3 22 50-71 7-28 (170)
409 1x6v_B Bifunctional 3'-phospho 96.1 0.0043 1.5E-07 53.4 4.1 27 48-74 51-77 (630)
410 3q72_A GTP-binding protein RAD 96.1 0.003 1E-07 44.2 2.7 21 51-71 4-24 (166)
411 1upt_A ARL1, ADP-ribosylation 96.1 0.0051 1.8E-07 43.1 3.9 23 49-71 7-29 (171)
412 1ky3_A GTP-binding protein YPT 96.1 0.005 1.7E-07 43.6 3.8 25 48-72 7-31 (182)
413 2fn4_A P23, RAS-related protei 96.1 0.005 1.7E-07 43.6 3.8 26 47-72 7-32 (181)
414 3fdi_A Uncharacterized protein 96.1 0.0044 1.5E-07 45.5 3.6 25 50-74 7-31 (201)
415 3c5c_A RAS-like protein 12; GD 96.1 0.0039 1.3E-07 44.9 3.2 24 49-72 21-44 (187)
416 2obl_A ESCN; ATPase, hydrolase 96.1 0.0055 1.9E-07 49.0 4.4 28 47-74 69-96 (347)
417 2iwr_A Centaurin gamma 1; ANK 96.1 0.0031 1.1E-07 44.8 2.7 23 50-72 8-30 (178)
418 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0052 1.8E-07 42.9 3.7 25 49-73 23-47 (149)
419 1tf7_A KAIC; homohexamer, hexa 96.0 0.0062 2.1E-07 51.5 4.8 46 37-83 270-315 (525)
420 3pqc_A Probable GTP-binding pr 96.0 0.0052 1.8E-07 44.1 3.8 25 48-72 22-46 (195)
421 1pui_A ENGB, probable GTP-bind 96.0 0.0023 7.7E-08 46.9 1.8 25 47-71 24-48 (210)
422 1zj6_A ADP-ribosylation factor 96.0 0.0079 2.7E-07 43.1 4.7 24 48-71 15-38 (187)
423 1m2o_B GTP-binding protein SAR 96.0 0.0038 1.3E-07 45.1 3.0 22 50-71 24-45 (190)
424 1g16_A RAS-related protein SEC 96.0 0.0051 1.8E-07 43.0 3.6 22 50-71 4-25 (170)
425 1nij_A Hypothetical protein YJ 96.0 0.0039 1.3E-07 49.2 3.2 25 48-72 3-27 (318)
426 3t1o_A Gliding protein MGLA; G 96.0 0.0044 1.5E-07 44.6 3.3 24 50-73 15-38 (198)
427 3mfy_A V-type ATP synthase alp 96.0 0.012 4.1E-07 49.7 6.2 39 47-88 225-263 (588)
428 1fzq_A ADP-ribosylation factor 96.0 0.0049 1.7E-07 44.1 3.5 25 48-72 15-39 (181)
429 2cxx_A Probable GTP-binding pr 96.0 0.0033 1.1E-07 45.0 2.6 22 51-72 3-24 (190)
430 2oil_A CATX-8, RAS-related pro 96.0 0.0044 1.5E-07 44.7 3.3 23 50-72 26-48 (193)
431 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0045 1.5E-07 44.2 3.2 23 50-72 5-27 (189)
432 4dkx_A RAS-related protein RAB 96.0 0.0044 1.5E-07 46.1 3.3 20 52-71 16-35 (216)
433 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.0046 1.6E-07 44.1 3.3 22 50-71 6-27 (186)
434 1xx6_A Thymidine kinase; NESG, 96.0 0.0094 3.2E-07 43.4 4.9 35 47-81 6-40 (191)
435 3kkq_A RAS-related protein M-R 96.0 0.0046 1.6E-07 44.1 3.3 24 49-72 18-41 (183)
436 2hxs_A RAB-26, RAS-related pro 96.0 0.0076 2.6E-07 42.6 4.4 24 49-72 6-29 (178)
437 2y8e_A RAB-protein 6, GH09086P 96.0 0.0043 1.5E-07 43.9 3.0 22 50-71 15-36 (179)
438 3vr4_A V-type sodium ATPase ca 96.0 0.018 6.1E-07 48.8 7.1 39 47-88 230-268 (600)
439 3gmt_A Adenylate kinase; ssgci 96.0 0.005 1.7E-07 46.2 3.5 24 50-73 9-32 (230)
440 2dpy_A FLII, flagellum-specifi 96.0 0.006 2.1E-07 50.4 4.3 28 47-74 155-182 (438)
441 3bwd_D RAC-like GTP-binding pr 96.0 0.0048 1.6E-07 43.8 3.3 23 50-72 9-31 (182)
442 2efe_B Small GTP-binding prote 96.0 0.0048 1.6E-07 43.8 3.2 23 50-72 13-35 (181)
443 2bme_A RAB4A, RAS-related prot 96.0 0.0044 1.5E-07 44.3 3.0 24 49-72 10-33 (186)
444 2g6b_A RAS-related protein RAB 95.9 0.0049 1.7E-07 43.7 3.3 24 49-72 10-33 (180)
445 3clv_A RAB5 protein, putative; 95.9 0.0048 1.6E-07 44.5 3.2 24 49-72 7-30 (208)
446 2a9k_A RAS-related protein RAL 95.9 0.005 1.7E-07 43.9 3.3 23 49-71 18-40 (187)
447 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0037 1.3E-07 51.9 2.8 27 47-73 136-162 (460)
448 1bif_A 6-phosphofructo-2-kinas 95.9 0.006 2E-07 50.8 4.1 27 48-74 38-64 (469)
449 1moz_A ARL1, ADP-ribosylation 95.9 0.0058 2E-07 43.5 3.5 24 48-71 17-40 (183)
450 3tw8_B RAS-related protein RAB 95.9 0.0046 1.6E-07 43.8 2.9 23 49-71 9-31 (181)
451 1zd9_A ADP-ribosylation factor 95.9 0.0053 1.8E-07 44.2 3.3 22 50-71 23-44 (188)
452 3cbq_A GTP-binding protein REM 95.9 0.0037 1.3E-07 45.4 2.4 23 49-71 23-45 (195)
453 3t5g_A GTP-binding protein RHE 95.9 0.0049 1.7E-07 43.8 3.0 23 49-71 6-28 (181)
454 3reg_A RHO-like small GTPase; 95.9 0.0053 1.8E-07 44.3 3.3 23 50-72 24-46 (194)
455 2bov_A RAla, RAS-related prote 95.9 0.0053 1.8E-07 44.6 3.3 23 49-71 14-36 (206)
456 1tf7_A KAIC; homohexamer, hexa 95.9 0.0054 1.8E-07 51.8 3.7 37 47-83 37-74 (525)
457 2xau_A PRE-mRNA-splicing facto 95.9 0.23 7.8E-06 44.0 14.1 22 50-71 110-131 (773)
458 2g3y_A GTP-binding protein GEM 95.9 0.005 1.7E-07 45.6 3.1 22 50-71 38-59 (211)
459 2a5j_A RAS-related protein RAB 95.9 0.0055 1.9E-07 44.1 3.3 22 50-71 22-43 (191)
460 2gf9_A RAS-related protein RAB 95.9 0.0055 1.9E-07 44.0 3.3 24 49-72 22-45 (189)
461 1vg8_A RAS-related protein RAB 95.9 0.0054 1.9E-07 44.6 3.2 25 48-72 7-31 (207)
462 1ega_A Protein (GTP-binding pr 95.9 0.0049 1.7E-07 48.3 3.1 25 48-72 7-31 (301)
463 2fh5_B SR-beta, signal recogni 95.9 0.0055 1.9E-07 45.0 3.3 24 49-72 7-30 (214)
464 3dz8_A RAS-related protein RAB 95.9 0.0051 1.8E-07 44.3 3.0 23 50-72 24-46 (191)
465 2ew1_A RAS-related protein RAB 95.8 0.0051 1.7E-07 45.0 3.0 24 49-72 26-49 (201)
466 2atv_A RERG, RAS-like estrogen 95.8 0.0074 2.5E-07 43.6 3.8 24 49-72 28-51 (196)
467 1zbd_A Rabphilin-3A; G protein 95.8 0.0052 1.8E-07 44.6 3.0 23 50-72 9-31 (203)
468 1f6b_A SAR1; gtpases, N-termin 95.8 0.0053 1.8E-07 44.7 3.0 22 50-71 26-47 (198)
469 1gwn_A RHO-related GTP-binding 95.8 0.0052 1.8E-07 45.1 3.0 24 49-72 28-51 (205)
470 1z06_A RAS-related protein RAB 95.8 0.0058 2E-07 43.9 3.2 23 49-71 20-42 (189)
471 3tkl_A RAS-related protein RAB 95.8 0.0058 2E-07 44.0 3.3 23 50-72 17-39 (196)
472 2qu8_A Putative nucleolar GTP- 95.8 0.006 2.1E-07 45.4 3.4 26 47-72 27-52 (228)
473 2qnr_A Septin-2, protein NEDD5 95.8 0.0042 1.4E-07 48.6 2.6 21 51-71 20-40 (301)
474 2fg5_A RAB-22B, RAS-related pr 95.8 0.0054 1.8E-07 44.3 3.0 24 49-72 23-46 (192)
475 3hdt_A Putative kinase; struct 95.8 0.0083 2.8E-07 44.8 4.1 25 49-73 14-38 (223)
476 3oes_A GTPase rhebl1; small GT 95.8 0.0055 1.9E-07 44.6 3.0 25 48-72 23-47 (201)
477 3iev_A GTP-binding protein ERA 95.8 0.0062 2.1E-07 47.8 3.5 25 47-71 8-32 (308)
478 2p5s_A RAS and EF-hand domain 95.8 0.0061 2.1E-07 44.2 3.3 24 48-71 27-50 (199)
479 3lxx_A GTPase IMAP family memb 95.8 0.0073 2.5E-07 45.4 3.7 25 47-71 27-51 (239)
480 2oze_A ORF delta'; para, walke 95.8 0.0094 3.2E-07 46.3 4.4 47 33-83 22-71 (298)
481 2qag_B Septin-6, protein NEDD5 95.8 0.0051 1.8E-07 50.5 3.0 20 52-71 45-64 (427)
482 1x3s_A RAS-related protein RAB 95.8 0.0064 2.2E-07 43.7 3.3 23 50-72 16-38 (195)
483 2wjy_A Regulator of nonsense t 95.7 0.024 8.1E-07 50.4 7.3 26 50-75 372-397 (800)
484 4bas_A ADP-ribosylation factor 95.7 0.0074 2.5E-07 43.5 3.5 25 47-71 15-39 (199)
485 3ug7_A Arsenical pump-driving 95.7 0.016 5.6E-07 46.3 5.8 37 47-83 24-60 (349)
486 2b6h_A ADP-ribosylation factor 95.7 0.01 3.4E-07 42.9 4.1 24 48-71 28-51 (192)
487 2gf0_A GTP-binding protein DI- 95.7 0.0062 2.1E-07 44.0 3.0 23 49-71 8-30 (199)
488 4dzz_A Plasmid partitioning pr 95.7 0.011 3.8E-07 43.0 4.4 35 50-84 2-37 (206)
489 3def_A T7I23.11 protein; chlor 95.7 0.012 4.2E-07 44.9 4.8 25 48-72 35-59 (262)
490 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0063 2.2E-07 44.4 3.0 23 49-71 8-30 (206)
491 1ksh_A ARF-like protein 2; sma 95.7 0.0068 2.3E-07 43.3 3.1 24 49-72 18-41 (186)
492 1ko7_A HPR kinase/phosphatase; 95.7 0.0078 2.7E-07 47.3 3.6 24 49-72 144-167 (314)
493 2h17_A ADP-ribosylation factor 95.7 0.0053 1.8E-07 43.8 2.5 24 49-72 21-44 (181)
494 2q3h_A RAS homolog gene family 95.7 0.0069 2.4E-07 43.9 3.1 23 49-71 20-42 (201)
495 3cph_A RAS-related protein SEC 95.7 0.0072 2.5E-07 44.2 3.3 23 49-71 20-42 (213)
496 3zq6_A Putative arsenical pump 95.6 0.012 4.1E-07 46.5 4.6 35 49-83 14-48 (324)
497 1knx_A Probable HPR(Ser) kinas 95.6 0.0075 2.6E-07 47.3 3.4 23 49-71 147-169 (312)
498 1h65_A Chloroplast outer envel 95.6 0.014 4.7E-07 44.8 4.8 25 48-72 38-62 (270)
499 3llu_A RAS-related GTP-binding 95.6 0.0059 2E-07 44.2 2.6 24 49-72 20-43 (196)
500 3q3j_B RHO-related GTP-binding 95.6 0.0077 2.6E-07 44.4 3.3 23 50-72 28-50 (214)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=8.2e-27 Score=199.09 Aligned_cols=180 Identities=15% Similarity=0.164 Sum_probs=137.6
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHH----hhcccccceEEEEechhhhccCchHHHHHHHH
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYD----LISHEFEGSSFLADVREKFKNKGSVISFQRQL 103 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
+||+.++++|.++|........++|.|+|++|+||||||+.+++ +...+|+.++|+ +++.... .+ ...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~-~~-~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP-KS-TFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST-TH-HHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC-CC-HHHHHHHH
Confidence 49999999999999764335679999999999999999999996 678889888888 6655431 22 78888999
Q ss_pred HHHHhhccC-CCccc-----ccccHHHHHHhhCCC-eEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhhc
Q 047309 104 LVEILKLEK-DSIWN-----VGDGINILGSRLQHK-KVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKTY 176 (218)
Q Consensus 104 ~~~~~~~~~-~~~~~-----~~~~~~~l~~~l~~~-~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~ 176 (218)
+..+..... ....+ ...+...+++.+.++ ++||||||+|+...+ .+.. .+|++||+|||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988765422 11122 233578899999996 999999999997765 2221 2789999999999988876
Q ss_pred C-CCceeeCCCCChhHHHHHHHHhhcCCCCCCchhHhhhccc
Q 047309 177 G-MDEIYKPNELNYHDALQLFNMKAFKIQKPLEECVQLSEGV 217 (218)
Q Consensus 177 ~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~i~~~i 217 (218)
. ....++|++|+.+++++||.+++++... .+.+++++++|
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I 322 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKT 322 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHH
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHH
Confidence 5 3467999999999999999999876542 35566655544
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=1.3e-22 Score=186.86 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=135.0
Q ss_pred ccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh---hcccccceEEEEechhhhccCch
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL---ISHEFEGSSFLADVREKFKNKGS 95 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
..|..+..|+||++++++|.++|.... ...+++.|+|++|+||||||++++++ ...+|...+||.++..... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 194 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SG 194 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hH
Confidence 345667789999999999999996543 56789999999999999999999986 3556766665556655321 11
Q ss_pred HHHHHHHHHHHHhhccC---CCcccccccHHHHHHhhCCC--eEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 96 VISFQRQLLVEILKLEK---DSIWNVGDGINILGSRLQHK--KVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
....+..++..+..... ........+...++..+.++ ++||||||+|+...+..+ .++++||+|||+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 44445566666544322 12234456777788888776 999999999998776654 5688999999999
Q ss_pred hhHhh-cCCCceeeCCC-CChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 171 HLLKT-YGMDEIYKPNE-LNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 171 ~~~~~-~~~~~~~~l~~-L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.++.. +.....+.+.+ |+.+++++||...++.... ..+...+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~ 315 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIK 315 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHH
Confidence 88754 34566789996 9999999999998854332 2333444443
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=169.91 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=117.7
Q ss_pred cccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh---cccccc-eEEEEechhhhccCch
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI---SHEFEG-SSFLADVREKFKNKGS 95 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~---~~~~~~-~~~~~~~~~~~~~~~~ 95 (218)
.|..+..|+||+.++++|.+++.... ...++++|+|++|+||||||..++++. ..+|.. +.|+ ++..... ..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv-~~~~~~~-~~- 194 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV-SVGKQDK-SG- 194 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEE-EEESCCH-HH-
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEE-ECCCCch-HH-
Confidence 35566789999999999999997543 456899999999999999999999754 567754 5555 5543211 11
Q ss_pred HHHHHHHHHHHHhhcc---CCCcccccccHHHHHHhhCC--CeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 96 VISFQRQLLVEILKLE---KDSIWNVGDGINILGSRLQH--KKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 96 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~--~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
+...+..++..+.... .....+.......+...+.+ +++||||||+|+...+..+ .++++||+|||+.
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 2222233333332111 11223344566667776654 7899999999987655432 5678999999999
Q ss_pred hhHhhcCCCceeeC---CCCChhHHHHHHHHhhcC
Q 047309 171 HLLKTYGMDEIYKP---NELNYHDALQLFNMKAFK 202 (218)
Q Consensus 171 ~~~~~~~~~~~~~l---~~L~~~e~~~l~~~~~~~ 202 (218)
.+...+. ...+++ .+|+.+++++||...++.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 8766543 233444 699999999999999865
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.87 E-value=7.6e-22 Score=174.75 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=117.4
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHH--hhcccccceEEEEechhhhccCchHHHHHHHHH
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYD--LISHEFEGSSFLADVREKFKNKGSVISFQRQLL 104 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (218)
.+||+.++++|.++|... ...+++.|+|++|+||||||+.+++ ++..+|+..++|.+++.... ...++..++
T Consensus 130 ~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d----~~~IL~~Ll 203 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS----PETVLEMLQ 203 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS----HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC----HHHHHHHHH
Confidence 499999999999999763 2368999999999999999999997 46778887554446665432 455555555
Q ss_pred HHHhhccCC---C-------cccccccHHHHHHhh---CCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 105 VEILKLEKD---S-------IWNVGDGINILGSRL---QHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 105 ~~~~~~~~~---~-------~~~~~~~~~~l~~~l---~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
..+....+. . ..+...+...++..+ .++++||||||+|+...|..+. ++++||+|||+..
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 543322110 0 012233455666655 6899999999999988887652 6799999999998
Q ss_pred hHhhcCCCceeeCC------CCChhHHHHHHHHhhc
Q 047309 172 LLKTYGMDEIYKPN------ELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 ~~~~~~~~~~~~l~------~L~~~e~~~l~~~~~~ 201 (218)
++..+.....+.++ +|+.+|+++||.++..
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 87644322345566 9999999999999853
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=2.5e-16 Score=129.54 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=107.6
Q ss_pred cccccccccchhHHHHHHhh-hcC-CC--CCceEEEE--EcCCCccHHHHHHHHHHhhccc-----cc-ceEEEEechhh
Q 047309 22 ETLKKLVGIDSRLEELRSLM-NKG-PN--DDVRMIGI--CGMGGLGKTNLARVVYDLISHE-----FE-GSSFLADVREK 89 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l-~~~-~~--~~~~~v~i--~G~~GiGKT~La~~v~~~~~~~-----~~-~~~~~~~~~~~ 89 (218)
..+..|+||+.+++.|.+++ ... .. ...+.++| +|++|+|||+|++.+++..... +. .++|+ ++...
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 97 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV-NAFNA 97 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE-EGGGC
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE-ECCCC
Confidence 45578999999999999988 431 11 23467888 9999999999999999876442 12 23444 33222
Q ss_pred hccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC--CCeEEEEEeCCCCh--------hHhhHHhcCCCCC--
Q 047309 90 FKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ--HKKVLLVIDDVVDI--------KQLEYLAGKREWF-- 157 (218)
Q Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~livlD~~~~~--------~~~~~l~~~~~~~-- 157 (218)
. ....++..++..+....+....+...+...+...+. +++++|||||++.. ..+..+...+...
T Consensus 98 ~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 98 P----NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp C----SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred C----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 1 156777777777643322112223344555555553 67999999999753 2233332222111
Q ss_pred -C--CCceEEEEeCChhhHhh--------cCC-CceeeCCCCChhHHHHHHHHhh
Q 047309 158 -G--SGSRIIVTSRDEHLLKT--------YGM-DEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 158 -~--~~~~ilittr~~~~~~~--------~~~-~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
. ....+|+||+....... ... ...+.+.||+.+++.++|..++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 1 33457778765543211 111 2339999999999999998664
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=1.4e-15 Score=122.20 Aligned_cols=172 Identities=12% Similarity=0.141 Sum_probs=104.8
Q ss_pred CccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh--ccCch
Q 047309 18 PLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF--KNKGS 95 (218)
Q Consensus 18 ~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~ 95 (218)
|.++..+..|+||+.+++.|.+++... +.++|+|++|+|||+|++.++++.. .+|+ ++.... ....+
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~-~~~~~~~~~~~~~ 73 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILI-DCRELYAERGHIT 73 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEE-EHHHHHHTTTCBC
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEE-EeecccccccCCC
Confidence 345566778999999999999998752 6899999999999999999998652 4455 333321 00111
Q ss_pred HHHHHHHHHHHHhh----------------ccCC-CcccccccHHHHHHhhCC-CeEEEEEeCCCChhH--------hhH
Q 047309 96 VISFQRQLLVEILK----------------LEKD-SIWNVGDGINILGSRLQH-KKVLLVIDDVVDIKQ--------LEY 149 (218)
Q Consensus 96 ~~~i~~~~~~~~~~----------------~~~~-~~~~~~~~~~~l~~~l~~-~~~livlD~~~~~~~--------~~~ 149 (218)
...+...+...+.. .... .......+...+...... ++.+|||||++.... +..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 34444444433211 0000 011223344445444432 389999999976432 222
Q ss_pred HhcCCCCCCCCceEEEEeCChhhHhhc------------CCCceeeCCCCChhHHHHHHHHhh
Q 047309 150 LAGKREWFGSGSRIIVTSRDEHLLKTY------------GMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 150 l~~~~~~~~~~~~ilittr~~~~~~~~------------~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
++..+.+..++..+++|++.......+ .....+.+.||+.+|+.+++...+
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 222211112467889998876432211 113479999999999999998864
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=2.3e-15 Score=122.66 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=111.4
Q ss_pred cccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhccc--------ccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHE--------FEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--------~~~~~~~~~~~~~~~~ 92 (218)
..+..|+||+.+++++.+++... .....+.++|+|++|+|||+||+.+++.+... ....+++ ++....
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~-- 93 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV-NCREVG-- 93 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE-EHHHHC--
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE-ECccCC--
Confidence 34578999999999999887651 11445689999999999999999999876333 2223344 433322
Q ss_pred CchHHHHHHHHHHHHhhccCC-CcccccccHHHHHHhhCCCeEEEEEeCCCChhH-------hhHHhcCCCCCCCCceEE
Q 047309 93 KGSVISFQRQLLVEILKLEKD-SIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ-------LEYLAGKREWFGSGSRII 164 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~-------~~~l~~~~~~~~~~~~il 164 (218)
.+...++..++..+.+.... ...+...+...+...+...+.+|||||++.... +..+... ..+..+|
T Consensus 94 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----~~~~~iI 168 (384)
T 2qby_B 94 -GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS----DANISVI 168 (384)
T ss_dssp -SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS----SSCEEEE
T ss_pred -CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC----CcceEEE
Confidence 01566677777766433221 122234556667777766655999999976432 2233322 1567788
Q ss_pred EEeCChhh----Hhh--cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 165 VTSRDEHL----LKT--YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 165 ittr~~~~----~~~--~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+||+.... ... ......+.++|++.++..+++..++.
T Consensus 169 ~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 169 MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp EECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 88876532 111 11134899999999999999998753
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=3.7e-15 Score=121.37 Aligned_cols=175 Identities=12% Similarity=0.089 Sum_probs=108.9
Q ss_pred cccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhccc------ccceEEEEechhhhccCc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHE------FEGSSFLADVREKFKNKG 94 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~------~~~~~~~~~~~~~~~~~~ 94 (218)
..+..|+||+.+++.+.+++... .....+.++|+|++|+|||+|++.+++..... ....+++ ++.....
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~--- 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV-NARHRET--- 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE-ETTTSCS---
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE-ECCcCCC---
Confidence 45578999999999999998552 11455789999999999999999999876432 1223334 3333221
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh--CCCeEEEEEeCCCChhH-------hhHHhcCCCCC--CCCceE
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL--QHKKVLLVIDDVVDIKQ-------LEYLAGKREWF--GSGSRI 163 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~~~-------~~~l~~~~~~~--~~~~~i 163 (218)
...+...++..+....+....+...+...+...+ .+++.+|+||+++.... +..+....... ..+..+
T Consensus 92 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 92 -PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp -HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred -HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 5566777777664322222222344455565555 35688999999986432 22222221111 234567
Q ss_pred EEEeCChhhH----hh-cCCC--ceeeCCCCChhHHHHHHHHhhc
Q 047309 164 IVTSRDEHLL----KT-YGMD--EIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 164 littr~~~~~----~~-~~~~--~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
|++|+..... .. .+.. ..+.++|++.++..+++..++.
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 7777655221 11 1222 4799999999999999998753
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=3.6e-15 Score=120.09 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=100.2
Q ss_pred CccccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh-ccCchH
Q 047309 18 PLKSETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF-KNKGSV 96 (218)
Q Consensus 18 ~~~~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (218)
|.++..+..|+||+.+++.|.+ +.. +.++|+|++|+|||+|++.++++.... ..|+ ++.... ....+.
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~ 74 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISY 74 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCH
Confidence 4455677789999999999999 753 599999999999999999999876432 3555 333210 000002
Q ss_pred HHHHHHHHHHHh-------------hc----cCCC-----------cccccccHHHHHHhhCCCeEEEEEeCCCChh---
Q 047309 97 ISFQRQLLVEIL-------------KL----EKDS-----------IWNVGDGINILGSRLQHKKVLLVIDDVVDIK--- 145 (218)
Q Consensus 97 ~~i~~~~~~~~~-------------~~----~~~~-----------~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--- 145 (218)
......+...+. .. .... ......+...+.+... ++++|||||++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 222222222221 00 0000 0111223333333222 48999999997632
Q ss_pred --HhhHHhcCCCCCCCCceEEEEeCChhhHhh----------c-CC-CceeeCCCCChhHHHHHHHHhh
Q 047309 146 --QLEYLAGKREWFGSGSRIIVTSRDEHLLKT----------Y-GM-DEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 146 --~~~~l~~~~~~~~~~~~ilittr~~~~~~~----------~-~~-~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.+..++..+....++..+|+|++....... + +. ...+.+.||+.+++.+++...+
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 222222222111246789999997653221 1 11 3579999999999999999865
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.8e-15 Score=121.96 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=105.5
Q ss_pred cccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc---cceEEEEechhhhccCchHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF---EGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 97 (218)
..+..|+||+.+++.+.+++... .....+.++|+|++|+|||+|++.+++.....+ ...+++ ++..... ..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i-~~~~~~~----~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI-NTRQIDT----PY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE-EHHHHCS----HH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE-ECCCCCC----HH
Confidence 45678999999999999998752 114557899999999999999999998765442 233444 3333221 34
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhC--CCeEEEEEeCCCChh------HhhHHhcCCCC-CCCCceEEEEeC
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ--HKKVLLVIDDVVDIK------QLEYLAGKREW-FGSGSRIIVTSR 168 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~livlD~~~~~~------~~~~l~~~~~~-~~~~~~ilittr 168 (218)
.+...++..+....+....+.......+...+. +++.+||||+++... .+..+...+.. ...+..+|++|+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 445555444322111111122333444554443 458999999996532 23333222211 133456777887
Q ss_pred ChhhHhhc-----CC--CceeeCCCCChhHHHHHHHHhh
Q 047309 169 DEHLLKTY-----GM--DEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 169 ~~~~~~~~-----~~--~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.......+ .. ...+.++|++.++..+++..++
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 65432221 11 2479999999999999999865
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=2.5e-14 Score=116.70 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=109.5
Q ss_pred cccccccccchhHHHHHHhhhcC---CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG---PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~---~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 97 (218)
..+..++||+.+++.+.+++... .....+.++|+|++|+|||+|++.+++...... ...+++ ++..... ..
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i-~~~~~~~----~~ 88 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI-NGFIYRN----FT 88 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE-ETTTCCS----HH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE-eCccCCC----HH
Confidence 34578999999999999988651 112234899999999999999999998775542 233444 3332211 45
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhh--CCCeEEEEEeCCCCh--hHhhHHhcCCCCCC----CCceEEEEeCC
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRL--QHKKVLLVIDDVVDI--KQLEYLAGKREWFG----SGSRIIVTSRD 169 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~livlD~~~~~--~~~~~l~~~~~~~~----~~~~ilittr~ 169 (218)
.+...++..+....+....+...+...+...+ .+++.+|+||+++.. .....+...+.... .+..+|++|+.
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 56666666543222111222334444554444 356889999999764 33444433332111 35677778776
Q ss_pred hhhHhhcC-------CCceeeCCCCChhHHHHHHHHhhc
Q 047309 170 EHLLKTYG-------MDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 170 ~~~~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
......+. ....+.++|++.++..+++...+.
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 54322211 123699999999999999998764
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.57 E-value=7.5e-14 Score=104.86 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=97.3
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i 99 (218)
|.....++||+..++.+.+++... ..+.++|+|++|+|||+|++.+++.+.... .......+...... .. .
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 84 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG----ID-V 84 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC----HH-H
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC----hH-H
Confidence 344567999999999999999863 233489999999999999999998763332 22222222222111 11 1
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChhh-H-hh
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEHL-L-KT 175 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~~-~-~~ 175 (218)
....+........ ...+++.+|+|||++.. .....+...+.....+..+|+||+.... . ..
T Consensus 85 ~~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 85 VRHKIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp HHHHHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence 1222222111100 01256789999999763 2333343333323456678888876532 1 11
Q ss_pred cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 176 YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
......+++.+++.++..+++.+.+.
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHH
Confidence 23456899999999999999998764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=1.2e-13 Score=105.11 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred ccccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHH
Q 047309 21 SETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
|.....++||+.+++.+..++... ...+.++|+|++|+|||+|++.+++.+...+.....- +. . .. ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~~-~-------~~-~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-CG-V-------CD-NC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-CS-C-------SH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-Cc-c-------cH-HH
Confidence 344567999999999999999763 2235889999999999999999998764332111000 00 0 00 00
Q ss_pred HHHHHH----HhhccCCCcccccccHHHHHHh----hCCCeEEEEEeCCCC--hhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 101 RQLLVE----ILKLEKDSIWNVGDGINILGSR----LQHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~livlD~~~~--~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
..+... +.............+...+... ..+++.+|||||++. ...+..+...+.....+..+|+||+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 000000 0000000000001111111111 124578999999975 334455544443334567788888765
Q ss_pred hh-Hh-hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 HL-LK-TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ~~-~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.. .. .......+++++++.++..+++...+.
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 32 11 123457899999999999999998764
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.4e-13 Score=106.80 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=101.4
Q ss_pred ccccccccchhHHHHHHhhhcC-CCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------c-ceEEEEechhhhccCc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKG-PNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------E-GSSFLADVREKFKNKG 94 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~-~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~-~~~~~~~~~~~~~~~~ 94 (218)
+.+.+.||++|+++|...+... ....++.++|+|++|+|||++++.+++++.... . ..+++ ++....+
T Consensus 18 ~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~I-Nc~~~~t--- 93 (318)
T 3te6_A 18 KRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHI-DALELAG--- 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEE-ETTCCC----
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEE-eccccCC---
Confidence 3445899999999998888652 225678899999999999999999999774321 1 22334 3333222
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHh--hCCCeEEEEEeCCCChh---HhhHHhcCCCCCCCCceEEEEeCC
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSR--LQHKKVLLVIDDVVDIK---QLEYLAGKREWFGSGSRIIVTSRD 169 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~livlD~~~~~~---~~~~l~~~~~~~~~~~~ilittr~ 169 (218)
...+...++.++.+...........+...+... ..+++++|+||+++... .+..++...........+|.++..
T Consensus 94 -~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 94 -MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred -HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecC
Confidence 456677777776543211111111222223322 23568999999998642 222222110001112233334433
Q ss_pred hhh---------HhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 170 EHL---------LKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 170 ~~~---------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+. ..++. ...+.+.|++.++..++++.++..
T Consensus 173 ~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 173 NVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 221 11221 246999999999999999988743
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.45 E-value=4.1e-13 Score=98.49 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=86.5
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-------ccceEEEEechhhhccCc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-------FEGSSFLADVREKFKNKG 94 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~ 94 (218)
.....++||+++++++.+++.. ...+.++|+|++|+|||+||+.+++.+... .....++ ++........
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 94 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-DMGALVAGAK 94 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-CHHHHHTTTC
T ss_pred ccccccccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe-eHHHHhccCC
Confidence 3456799999999999999976 345678999999999999999999875331 1122223 3322211000
Q ss_pred ---hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---------HhhHHhcCCCCCCCCce
Q 047309 95 ---SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---------QLEYLAGKREWFGSGSR 162 (218)
Q Consensus 95 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---------~~~~l~~~~~~~~~~~~ 162 (218)
.....+..++..+ . ..+++.+|+|||++... .+..++..+.. .....
T Consensus 95 ~~~~~~~~~~~~~~~~------------------~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~ 153 (195)
T 1jbk_A 95 YRGEFEERLKGVLNDL------------------A--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELH 153 (195)
T ss_dssp SHHHHHHHHHHHHHHH------------------H--HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCC
T ss_pred ccccHHHHHHHHHHHH------------------h--hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeE
Confidence 0111111111111 0 13557899999997542 11111111111 23456
Q ss_pred EEEEeCChhhH-------hhcCCCceeeCCCCChhHHHHHH
Q 047309 163 IIVTSRDEHLL-------KTYGMDEIYKPNELNYHDALQLF 196 (218)
Q Consensus 163 ilittr~~~~~-------~~~~~~~~~~l~~L~~~e~~~l~ 196 (218)
+|++|...... ...+....+.+.+++.++..+++
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 77776654421 11234457899999999887765
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.8e-12 Score=101.14 Aligned_cols=157 Identities=15% Similarity=0.260 Sum_probs=95.6
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
.....++||+..++.+.+++... ..+.++++|++|+|||++|+.+++.+... +...+...+..... -....
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~i 89 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR-----GIDVV 89 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC-----SHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc-----ChHHH
Confidence 34467999999999999999763 33348999999999999999999876332 22222221222110 11222
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhh-CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChhh-Hhh-
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRL-QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEHL-LKT- 175 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~~-~~~- 175 (218)
..++..+..... .+ .+++.+|||||++.. .....+...+.....++.+|++|..... ...
T Consensus 90 ~~~~~~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 90 RNQIKHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HTHHHHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 222322221000 01 245789999999863 2333333333222455677887766432 111
Q ss_pred cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 176 YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+....+.+.+++.++..+++...+.
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHH
Confidence 24466899999999999999998754
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.33 E-value=1.8e-11 Score=97.10 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=95.3
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccc-eEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEG-SSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i 99 (218)
.....++|++..++.+.+++... ..+.++++|++|+|||++|+.+++.+. ..+.. ...+ +...... ...+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 88 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-NASDERG-IDVVRHK 88 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT---CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE-ETTSTTC-TTTSSHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC---CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE-eCccccC-hHHHHHH
Confidence 44566999999999999998763 333489999999999999999998752 22221 2222 2222110 0001111
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-hH-hh
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-LL-KT 175 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~~-~~ 175 (218)
...+.. ..+ ...+++.++|||+++.. .....+...+.....+..+|++|.... +. ..
T Consensus 89 ~~~~~~----~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 89 IKEFAR----TAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp HHHHHH----SCC---------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred HHHHHh----cCC---------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 111110 000 00245779999999764 334445544443345567777776543 21 11
Q ss_pred cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 176 YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.+....+.+.+++.++..+++...+..
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHH
Confidence 244668999999999999999987643
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.1e-11 Score=98.51 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=94.3
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhhhccCchHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREKFKNKGSVISFQ 100 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
.....++|++..++.+.+++... ..+.++++|++|+|||++|+.+++.+.... .......+..... -....
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~ 93 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER-----GINVI 93 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-----HHHTT
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC-----chHHH
Confidence 34556999999999999999763 334589999999999999999998763321 1111111222110 01111
Q ss_pred HHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChhh-Hhh-c
Q 047309 101 RQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEHL-LKT-Y 176 (218)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~~-~~~-~ 176 (218)
...+.......+ ...+++.+||+|+++.. .....+...+.....+.++|+|+..... ... .
T Consensus 94 ~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 REKVKEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHHHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 111111110000 01145779999999864 3344444333333456678888766432 111 1
Q ss_pred CCCceeeCCCCChhHHHHHHHHhhc
Q 047309 177 GMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 177 ~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+....+.+.|++.++..+++...+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHH
Confidence 2345799999999999999998764
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=7e-11 Score=92.43 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=92.8
Q ss_pred ccccccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 19 LKSETLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 19 ~~~~~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.+......++|.+..++.|.+++... .-...+.++|+|++|+|||+||+.+++.....+ ..+ ....
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v-~~~~ 86 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRV-VGSE 86 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEE-EGGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-ehHH
Confidence 34456677999999999998887431 002346789999999999999999998764332 112 2222
Q ss_pred hhcc-CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------------hHhhHHh
Q 047309 89 KFKN-KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------------KQLEYLA 151 (218)
Q Consensus 89 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------------~~~~~l~ 151 (218)
.... ..........+ +.......+.+|+||+++.. ..+..++
T Consensus 87 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 145 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDI---------------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL 145 (285)
T ss_dssp GCCCSTTHHHHHHHHH---------------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHH---------------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence 1111 11111111111 22222345679999999643 1122222
Q ss_pred cCCC--CCCCCceEEEEeCChhhHhh--cC--C-CceeeCCCCChhHHHHHHHHhhcCC
Q 047309 152 GKRE--WFGSGSRIIVTSRDEHLLKT--YG--M-DEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 152 ~~~~--~~~~~~~ilittr~~~~~~~--~~--~-~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
..+. ....+..+|.||........ .. . ...+.+++.+.++..++++.++...
T Consensus 146 ~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 146 AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM 204 (285)
T ss_dssp HHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred HHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC
Confidence 2111 11234456667765432111 11 2 3469999999999999999887544
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=3.5e-11 Score=97.52 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=94.8
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQ 102 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
....++||+..++.+.+++... .....++|+|++|+|||++|+.+++.+....... .. .+.. ...+..
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~-~~~~--------~~~~~~ 81 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT-PCGV--------CDNCRE 81 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS-CCSS--------SHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC-CCcc--------cHHHHH
Confidence 4456999999999999999763 2235788999999999999999998764321100 00 0000 000011
Q ss_pred HHHH----HhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-
Q 047309 103 LLVE----ILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH- 171 (218)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~- 171 (218)
+... +...........+.+...+.... .+++.+||||+++.. .....+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 1000 00000001111222222232222 245679999999763 334444443333344566777766543
Q ss_pred h-HhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 172 L-LKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 ~-~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+ ....+....+++.+++.++..+++.+.+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHH
Confidence 1 11234467899999999999999997653
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.21 E-value=7.7e-11 Score=93.20 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=87.5
Q ss_pred cccccchhHHHHHHhhhcC------------CCCCceEEEEEcCCCccHHHHHHHHHHhhccccc----ceEEEEechhh
Q 047309 26 KLVGIDSRLEELRSLMNKG------------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE----GSSFLADVREK 89 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~------------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~----~~~~~~~~~~~ 89 (218)
.++|.+...+.+.+++... .......++|+|++|+|||++|+.+++.+..... ..+.+ +....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~-~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSV-TRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEE-cHHHh
Confidence 5899999999988766421 0134567999999999999999999986533211 12222 22221
Q ss_pred hcc-CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-----------hHhhHHhcCCCCC
Q 047309 90 FKN-KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-----------KQLEYLAGKREWF 157 (218)
Q Consensus 90 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-----------~~~~~l~~~~~~~ 157 (218)
... ....... ....+... ..-+|+||+++.. .....++..+...
T Consensus 111 ~~~~~g~~~~~---------------------~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 111 VGQYIGHTAPK---------------------TKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp CCSSTTCHHHH---------------------HHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred hhhcccccHHH---------------------HHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 110 0001111 11111111 2349999999732 2334444433333
Q ss_pred CCCceEEEEeCChh----------hHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 158 GSGSRIIVTSRDEH----------LLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 158 ~~~~~ilittr~~~----------~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+..+|+||.... +..++ ...+.+++++.++..+++...+.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 44567777775432 22222 36799999999999999988764
No 22
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.20 E-value=3.9e-10 Score=93.60 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=90.0
Q ss_pred ccccc-ccchhH--HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccccc--ceEEEEechhhhccCchHHH
Q 047309 24 LKKLV-GIDSRL--EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFE--GSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 24 ~~~~~-gR~~e~--~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (218)
...|+ |....+ ..+..+..... . ...++|+|++|+|||+||+.+++.+...+. .+.++ +...
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v-~~~~---------- 170 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI-TSEK---------- 170 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE-EHHH----------
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHH----------
Confidence 34466 654443 33444444432 2 678999999999999999999997654432 22333 2221
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----HhhHHhcCCCC-CCCCceEEEEeCCh---
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----QLEYLAGKREW-FGSGSRIIVTSRDE--- 170 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----~~~~l~~~~~~-~~~~~~ilittr~~--- 170 (218)
+...+...+... ....+......++.+|+|||++... .-..+...+.. ...+..+|+||.+.
T Consensus 171 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 171 FLNDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 222232222111 1223333333356799999996532 22222222111 13466788888762
Q ss_pred ------hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 ------HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 ------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+..++.....+.+.+++.++..+++.+.+.
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2344444456789999999999999998764
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.20 E-value=1.1e-09 Score=87.28 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=96.0
Q ss_pred ccccccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 21 SETLKKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
+..-..++|.+...+.|.+++.. ......+.++|+|++|+|||+||+.+++.....| +..+......
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 34456799999999999888721 1113346799999999999999999998764332 2222222111
Q ss_pred c-CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH-------------hhHHhcCCC--
Q 047309 92 N-KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ-------------LEYLAGKRE-- 155 (218)
Q Consensus 92 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~-------------~~~l~~~~~-- 155 (218)
. .+........+ +......++.+|+||+++.... ...++..+.
T Consensus 90 ~~~g~~~~~~~~~---------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 90 KWMGESEKLVKQL---------------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 148 (322)
T ss_dssp TTGGGHHHHHHHH---------------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHH---------------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc
Confidence 1 01011111111 2222235667999999974311 222222221
Q ss_pred -CCCCCceEEEEeCChhh-----HhhcCCCceeeCCCCChhHHHHHHHHhhcCCCC--CCchhHhhhc
Q 047309 156 -WFGSGSRIIVTSRDEHL-----LKTYGMDEIYKPNELNYHDALQLFNMKAFKIQK--PLEECVQLSE 215 (218)
Q Consensus 156 -~~~~~~~ilittr~~~~-----~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~--~~~~~~~i~~ 215 (218)
....+..||.||..... ..+ -...+.+.+.+.++..++++.++..... ....+..++.
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~ 214 (322)
T 3eie_A 149 GNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214 (322)
T ss_dssp GTSCCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred cccCCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 12334445556655322 222 2456889999999999999998765432 3445555554
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.20 E-value=1.2e-11 Score=93.95 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=85.1
Q ss_pred cccccccccc---hhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 22 ETLKKLVGID---SRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 22 ~~~~~~~gR~---~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
.....|+|++ ..++.+.+++.. ...+.++|+|++|+|||+||+.+++........+.++ ......... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~-~~~~~~~~~---~- 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI-PLGIHASIS---T- 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-EGGGGGGSC---G-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHH---H-
Confidence 3445688743 566777777765 2457899999999999999999999765443344454 333211110 0
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH----hhHHhcCCCCC-CCCc-eEEEEeCChh-
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ----LEYLAGKREWF-GSGS-RIIVTSRDEH- 171 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~----~~~l~~~~~~~-~~~~-~ilittr~~~- 171 (218)
... .. -.++.+|+|||++.... ...+...+... ..+. .+|+|++...
T Consensus 97 ---------------------~~~---~~--~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 97 ---------------------ALL---EG--LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp ---------------------GGG---TT--GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred ---------------------HHH---Hh--ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 000 00 03456999999965321 22222211100 1222 4777766422
Q ss_pred --------hHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 172 --------LLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 172 --------~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
+..++.....+++.+++.++..+++...+.
T Consensus 151 ~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 151 EAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp TTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 222222236799999999999999998764
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.19 E-value=1e-09 Score=88.76 Aligned_cols=184 Identities=11% Similarity=0.037 Sum_probs=98.6
Q ss_pred HHHHHHHHHHccCCccccccccccccchhHHHHHHhhhcC---------CCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 5 FIWDIVKAISSKIPLKSETLKKLVGIDSRLEELRSLMNKG---------PNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~gR~~e~~~l~~~l~~~---------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.++.+..++..+. ++..-..++|.+..++.|.+++... .....+.++|+|++|+|||+||+.+++....
T Consensus 66 ~~~~i~~~i~~~~--~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 66 MIELIMNEIMDHG--PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp HHHHHHHHTBCCS--CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcccCC--CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3444444443332 3345567999999999998887420 0134568999999999999999999987532
Q ss_pred cccceEEEEechhhhccC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------
Q 047309 76 EFEGSSFLADVREKFKNK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI---------- 144 (218)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~---------- 144 (218)
. ++..+........ .........+ +......++.+|+||+++..
T Consensus 144 ~----~~~i~~~~l~~~~~g~~~~~~~~~---------------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 198 (357)
T 3d8b_A 144 T----FFSISASSLTSKWVGEGEKMVRAL---------------------FAVARCQQPAVIFIDEIDSLLSQRGDGEHE 198 (357)
T ss_dssp E----EEEEEGGGGCCSSTTHHHHHHHHH---------------------HHHHHHTCSEEEEEETHHHHTBC------C
T ss_pred e----EEEEehHHhhccccchHHHHHHHH---------------------HHHHHhcCCeEEEEeCchhhhccCCCCcch
Confidence 2 2222333322111 1011111111 11111245679999999532
Q ss_pred ---hHhhHHhcCCCC----CCCCceEEEEeCChh-hHhh-cCC-CceeeCCCCChhHHHHHHHHhhcCC--CCCCchhHh
Q 047309 145 ---KQLEYLAGKREW----FGSGSRIIVTSRDEH-LLKT-YGM-DEIYKPNELNYHDALQLFNMKAFKI--QKPLEECVQ 212 (218)
Q Consensus 145 ---~~~~~l~~~~~~----~~~~~~ilittr~~~-~~~~-~~~-~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~ 212 (218)
.....++..+.. ......||.||.... +... .+. ...+.+...+.++..+++...+... ......+..
T Consensus 199 ~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~ 278 (357)
T 3d8b_A 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQ 278 (357)
T ss_dssp HHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 112222222111 112334454665432 1111 123 3468899999999999998876432 223344444
Q ss_pred hhc
Q 047309 213 LSE 215 (218)
Q Consensus 213 i~~ 215 (218)
+++
T Consensus 279 la~ 281 (357)
T 3d8b_A 279 IVQ 281 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 26
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.18 E-value=8.5e-10 Score=87.90 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=86.5
Q ss_pred cccccc-ccch--hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 23 TLKKLV-GIDS--RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 23 ~~~~~~-gR~~--e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
+.+.|+ |... ....+..++.... ...+.++|+|++|+|||+||+.+++........+.++ +... .
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i-~~~~----------~ 76 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADD----------F 76 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHH----------H
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE-EHHH----------H
Confidence 344565 5433 3344555555432 3456889999999999999999998764432233444 2222 1
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----HhhHHhcCCCC-CCCCceEEEEeCCh----
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----QLEYLAGKREW-FGSGSRIIVTSRDE---- 170 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----~~~~l~~~~~~-~~~~~~ilittr~~---- 170 (218)
...+...+.. .....+.... .++.+|+||+++... ....+...+.. ...+..+++|+...
T Consensus 77 ~~~~~~~~~~----------~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 77 AQAMVEHLKK----------GTINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHH----------TCHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHc----------CcHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 2222222211 0111222222 235699999997532 11222222110 12455677777542
Q ss_pred -----hhHhhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 171 -----HLLKTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 171 -----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+..++.....++++| +.++..+++...+.
T Consensus 146 ~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 146 DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 2333444456799999 99999999998864
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.16 E-value=2.9e-10 Score=94.42 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=89.4
Q ss_pred ccccccccccchhH---HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHH
Q 047309 21 SETLKKLVGIDSRL---EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 21 ~~~~~~~~gR~~e~---~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
|.....++|.+..+ +.|...+... ..+.++|+|++|+|||+||+.+++.....|. .+..... . ..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~a~~~---~---~~ 89 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIARYANADVE---RISAVTS---G---VK 89 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEETTTC---C---HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEEeccC---C---HH
Confidence 34556799999998 7888888763 3468999999999999999999987644321 1111111 1 12
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEE-EeCChh--h
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIV-TSRDEH--L 172 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ili-ttr~~~--~ 172 (218)
. ...++..... ....+++.+|+||+++... ....++..+. .....+|. ||.+.. +
T Consensus 90 ~-ir~~~~~a~~-----------------~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~~v~lI~att~n~~~~l 149 (447)
T 3pvs_A 90 E-IREAIERARQ-----------------NRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DGTITFIGATTENPSFEL 149 (447)
T ss_dssp H-HHHHHHHHHH-----------------HHHTTCCEEEEEETTTCC------CCHHHHH--TTSCEEEEEESSCGGGSS
T ss_pred H-HHHHHHHHHH-----------------hhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cCceEEEecCCCCccccc
Confidence 1 1122211100 0113567899999998643 2233332222 12234444 444432 1
Q ss_pred -HhhcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 173 -LKTYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 173 -~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
....+....+.+.+++.++..+++...+..
T Consensus 150 ~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 150 NSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred CHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 122344668999999999999999987643
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.15 E-value=1.5e-09 Score=83.65 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=85.1
Q ss_pred ccccccccchhHHHHHHhhhc---CCC------CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccC
Q 047309 23 TLKKLVGIDSRLEELRSLMNK---GPN------DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNK 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~---~~~------~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
.-..++|.+...+.+.+++.. ... ...+.++|+|++|+|||++|+.+++.....+ +.+ .........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhc
Confidence 445689999888888766532 111 3346788999999999999999998764332 222 222211111
Q ss_pred c-hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-----------------HhhHHhcCCC
Q 047309 94 G-SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-----------------QLEYLAGKRE 155 (218)
Q Consensus 94 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-----------------~~~~l~~~~~ 155 (218)
. ..... +...+.......+.+|+||+++... .+..++..+.
T Consensus 80 ~~~~~~~---------------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 80 GGLGAAR---------------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp TTHHHHH---------------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred cChhHHH---------------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 0 00111 1112222223456799999997541 1222322211
Q ss_pred CC--CCCceEEEEeCChhhHh-h-cC--C-CceeeCCCCChhHHHHHHHHhhcC
Q 047309 156 WF--GSGSRIIVTSRDEHLLK-T-YG--M-DEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 156 ~~--~~~~~ilittr~~~~~~-~-~~--~-~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.. ..+..+|.||....... . .+ . ...+.+.+.+.++..++++.++..
T Consensus 139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 139 GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 11 22345555665543211 1 11 2 357889999999999999887643
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=5.1e-10 Score=89.94 Aligned_cols=167 Identities=11% Similarity=0.172 Sum_probs=92.9
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
.....++|++..++.+..++... ..+.++++|++|+|||++|+.+++.+... +...+...+.... .. . ..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~---~~-~-~~ 105 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE---RG-I-SI 105 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC---CC-H-HH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC---CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc---cc-h-HH
Confidence 34567999999999999999763 22348899999999999999999875321 2222221122211 11 1 12
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCCCCCceEEEEeCChh-hHhh-
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWFGSGSRIIVTSRDEH-LLKT- 175 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~~~~~~ilittr~~~-~~~~- 175 (218)
.............. ..... .......+..-+|++|+++... ....+...+.......++++++.... +...
T Consensus 106 ~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 106 VREKVKNFARLTVS---KPSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp HTTHHHHHHHSCCC---CCCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhhhccc---ccchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 22222222111000 00000 0011112445699999997532 23333333322234566777665432 1111
Q ss_pred cCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 176 YGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 176 ~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
.+....+.+.+++.++...++...+.
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHH
Confidence 12245789999999999999998764
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=8.2e-10 Score=93.50 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=95.7
Q ss_pred cccccccccchhHHHHHHhhhcCC--------------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEech
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP--------------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVR 87 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~--------------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~ 87 (218)
.....++|++..++.+.+++.... ....+.++|+|++|+|||++|+.+++.+. +. ++.+ +..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCC
Confidence 345679999999999999986510 01346899999999999999999998762 11 1222 222
Q ss_pred hhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH--hhCCCeEEEEEeCCCChhH-----hhHHhcCCCCCCCC
Q 047309 88 EKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS--RLQHKKVLLVIDDVVDIKQ-----LEYLAGKREWFGSG 160 (218)
Q Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~livlD~~~~~~~-----~~~l~~~~~~~~~~ 160 (218)
... ...+....+..... ............. ...+++.+|+||+++.... +..+...+. ..+
T Consensus 112 ~~~-----~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~ 179 (516)
T 1sxj_A 112 DVR-----SKTLLNAGVKNALD-----NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTS 179 (516)
T ss_dssp SCC-----CHHHHHHTGGGGTT-----BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCS
T ss_pred Ccc-----hHHHHHHHHHHHhc-----cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcC
Confidence 211 11122211111100 0001000000000 1135678999999975311 222222221 123
Q ss_pred ceEEEEeCChh---hHhhcCCCceeeCCCCChhHHHHHHHHhhcC--CCCCCchhHhhh
Q 047309 161 SRIIVTSRDEH---LLKTYGMDEIYKPNELNYHDALQLFNMKAFK--IQKPLEECVQLS 214 (218)
Q Consensus 161 ~~ilittr~~~---~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~i~ 214 (218)
..+|+++.... +.........+.+.+++.++..+++...+.. ..-+++.+..|+
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la 238 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI 238 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44665554322 2222344667999999999999999876532 223334444444
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.12 E-value=7.9e-10 Score=89.48 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=39.2
Q ss_pred cccccccchhHHHHH---HhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 24 LKKLVGIDSRLEELR---SLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~---~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
...|+|++...+.+. +.+.... ...+.++|+|++|+|||+||+.+++.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 557999999977754 4444322 23468999999999999999999998754
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.10 E-value=7.1e-10 Score=88.30 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=86.5
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
.....++|++..++.+.+++... .....++++|++|+|||++|+.+++.+... ...+ +... .. .....
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i-~~~~----~~--~~~i~ 90 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFV-NGSD----CK--IDFVR 90 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEE-ETTT----CC--HHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEE-cccc----cC--HHHHH
Confidence 45567999999999999999853 234578888999999999999999876322 2222 2211 11 22222
Q ss_pred HHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh---HhhHHhcCCCCCCCCceEEEEeCChh-----hH
Q 047309 102 QLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK---QLEYLAGKREWFGSGSRIIVTSRDEH-----LL 173 (218)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~---~~~~l~~~~~~~~~~~~ilittr~~~-----~~ 173 (218)
..+........ ..+++-+|+||+++... ....+...+.....+..+|+||.... +.
T Consensus 91 ~~~~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 91 GPLTNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp THHHHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred HHHHHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 22222211110 02467799999998764 23333332222234567777776543 22
Q ss_pred hhcCCCceeeCCCCChhHHHHH
Q 047309 174 KTYGMDEIYKPNELNYHDALQL 195 (218)
Q Consensus 174 ~~~~~~~~~~l~~L~~~e~~~l 195 (218)
.+ ...+++.+++.++..++
T Consensus 155 sR---~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 155 SR---CRVITFGQPTDEDKIEM 173 (324)
T ss_dssp HH---SEEEECCCCCHHHHHHH
T ss_pred hh---CcEEEeCCCCHHHHHHH
Confidence 22 45799999998885433
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.2e-08 Score=81.31 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=92.9
Q ss_pred cccccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..-..++|.+...+.|.+.+.. ......+.++|+|++|+|||+||+.+++..... .++..+.......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhHHHHhh
Confidence 3456789999988888877631 111334689999999999999999999876211 1111122221110
Q ss_pred -CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCC---C
Q 047309 93 -KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKR---E 155 (218)
Q Consensus 93 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~---~ 155 (218)
.+........+ +......++.+|+||+++... ....++..+ .
T Consensus 86 ~~g~~~~~~~~l---------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 86 WLGESEKLVKNL---------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp SCCSCHHHHHHH---------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred hhhHHHHHHHHH---------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 00011111111 222223567899999997541 112222221 1
Q ss_pred CCCCCceEEEEeCChhh-Hh--hcCCCceeeCCCCChhHHHHHHHHhhcCCCC--CCchhHhhhc
Q 047309 156 WFGSGSRIIVTSRDEHL-LK--TYGMDEIYKPNELNYHDALQLFNMKAFKIQK--PLEECVQLSE 215 (218)
Q Consensus 156 ~~~~~~~ilittr~~~~-~~--~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~--~~~~~~~i~~ 215 (218)
....+..||.||..... .. .-+-...+.+++.+.++..++++.++..... ....+..|++
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 209 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR 209 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 11233344445544321 11 1123467889999999999999988754322 3345555554
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.09 E-value=4.1e-10 Score=82.00 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=42.3
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
....++||+.+++.+.+++.. ...+.++|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445699999999999999976 34567899999999999999999987643
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.08 E-value=3.1e-09 Score=82.54 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=82.9
Q ss_pred cccccccchhHHHHHH-------hhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchH
Q 047309 24 LKKLVGIDSRLEELRS-------LMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSV 96 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~-------~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (218)
...++|++..++++.. .+........+.++|+|++|+|||+||+.+++.....| +.+ +......... .
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i-~~~~~~~g~~-~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKI-CSPDKMIGFS-E 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEE-ECGGGCTTCC-H
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-eCHHHhcCCc-h
Confidence 4568999888777665 33322235667899999999999999999998753221 122 2221110000 0
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh------------hHhhHHhcCCCC---CCCCc
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI------------KQLEYLAGKREW---FGSGS 161 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~------------~~~~~l~~~~~~---~~~~~ 161 (218)
..... .+...+.......+.+|+||+++.. ..+..+...+.. .....
T Consensus 107 ~~~~~------------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 107 TAKCQ------------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp HHHHH------------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred HHHHH------------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 00000 1112222233456789999998643 112333222221 11223
Q ss_pred eEEEEeCChhhHhh---cCC-CceeeCCCCCh-hHHHHHHHHh
Q 047309 162 RIIVTSRDEHLLKT---YGM-DEIYKPNELNY-HDALQLFNMK 199 (218)
Q Consensus 162 ~ilittr~~~~~~~---~~~-~~~~~l~~L~~-~e~~~l~~~~ 199 (218)
.||.||...+.... .+. ...+.+++++. ++...++...
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence 45556766644332 122 46689999998 6666666553
No 36
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=2.1e-09 Score=86.47 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=90.3
Q ss_pred cccccccccchhHHHHHHhh-hcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE----------------
Q 047309 22 ETLKKLVGIDSRLEELRSLM-NKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA---------------- 84 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l-~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~---------------- 84 (218)
.....++|++..++.+.+++ ... +.+.++|+|++|+||||+++.++..+.......+++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~---~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPR---DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTT---CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 34567999999999999988 442 2233899999999999999999986432211111110
Q ss_pred -------echhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH--hhHHhcCCC
Q 047309 85 -------DVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ--LEYLAGKRE 155 (218)
Q Consensus 85 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~--~~~l~~~~~ 155 (218)
.......... .....+..+..+...... .... .+.. +.+++-++|||+++..+. ...+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNN-DRIVIQELLKEVAQMEQV-----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp EECSSEEEECCC----C-CHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCc-chHHHHHHHHHHHHhccc-----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0000000000 000122222222111000 0000 0000 123566999999986422 233333322
Q ss_pred CCCCCceEEEEeCChh-hH-hhcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 156 WFGSGSRIIVTSRDEH-LL-KTYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 156 ~~~~~~~ilittr~~~-~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
....+..+|++|.+.. +. ...+....+.+.+++.++..+++...+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 2244577888777642 21 1224467899999999999999998764
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.07 E-value=7.7e-09 Score=83.49 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=93.8
Q ss_pred ccccccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 21 SETLKKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
+..-..++|.+..++.|.+++.. ......+.++|+|++|+|||+||+.+++.....| +..+......
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhh
Confidence 34556799999999999887731 1112335688999999999999999999764322 2222222111
Q ss_pred cC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH-------------hhHHhcCCC--
Q 047309 92 NK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ-------------LEYLAGKRE-- 155 (218)
Q Consensus 92 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~-------------~~~l~~~~~-- 155 (218)
.. +..... +...+......++.+|+||+++.... ...++..+.
T Consensus 123 ~~~g~~~~~---------------------~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~ 181 (355)
T 2qp9_X 123 KWMGESEKL---------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 181 (355)
T ss_dssp CC---CHHH---------------------HHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC
T ss_pred hhcchHHHH---------------------HHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc
Confidence 00 000111 11112222235678999999975321 222222221
Q ss_pred -CCCCCceEEEEeCChhh---HhhcCCCceeeCCCCChhHHHHHHHHhhcCCC--CCCchhHhhhc
Q 047309 156 -WFGSGSRIIVTSRDEHL---LKTYGMDEIYKPNELNYHDALQLFNMKAFKIQ--KPLEECVQLSE 215 (218)
Q Consensus 156 -~~~~~~~ilittr~~~~---~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~--~~~~~~~~i~~ 215 (218)
....+..||.||..... +-.-+-...+.+.+.+.++..++++.++.... .....+..|++
T Consensus 182 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~ 247 (355)
T 2qp9_X 182 GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA 247 (355)
T ss_dssp C---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHH
T ss_pred cccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 11233444556654421 11112346788999999999999998875443 23344555543
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.07 E-value=4.6e-10 Score=89.29 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=86.9
Q ss_pred cccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
.....|+|++..+..+..++.... ......++|+|++|+|||+||+.+++.....| .++ +...... ...+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~~~----~~~l 80 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAIEK----PGDL 80 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTCCS----HHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-eccccCC----hHHH
Confidence 355679999999999988885311 12346788999999999999999998764321 222 2221100 1111
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCC------------------CC
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWF------------------GS 159 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~------------------~~ 159 (218)
... +... ..++.+|+||+++... ....+...+... .+
T Consensus 81 ----~~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 81 ----AAI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ----HHH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ----HHH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 111 1110 1345699999998643 222222111100 12
Q ss_pred CceEEEEeCChh-hHhh-cCCC-ceeeCCCCChhHHHHHHHHhhcC
Q 047309 160 GSRIIVTSRDEH-LLKT-YGMD-EIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 160 ~~~ilittr~~~-~~~~-~~~~-~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
...+|.+|.... +... .... ..+.+.+++.++..+++...+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL 183 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh
Confidence 345666655432 2111 1223 57999999999999999987653
No 39
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.06 E-value=3.7e-09 Score=88.69 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=94.5
Q ss_pred cccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc-
Q 047309 24 LKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN- 92 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~- 92 (218)
...++|.+..+++|.+++... .-...+.++|+|++|+|||+||+.+++.....| +.+ ++......
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhhh
Confidence 346899999999998887542 013456789999999999999999988753221 222 33322111
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-------------hHhhHHhcCCCC--C
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-------------KQLEYLAGKREW--F 157 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-------------~~~~~l~~~~~~--~ 157 (218)
...... .+...+.....+.+.+|+||+++.. .....++..+.. .
T Consensus 279 ~g~~~~---------------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 279 AGESES---------------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp TTHHHH---------------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT
T ss_pred cchhHH---------------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc
Confidence 110111 1122233333466789999999421 111222222211 1
Q ss_pred CCCceEEEEeCChhh-Hhh----cCCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 158 GSGSRIIVTSRDEHL-LKT----YGMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 158 ~~~~~ilittr~~~~-~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.....||.||..... ... ......+.+.+.+.++..++|+.++..... ....+..++.
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~ 401 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHH
Confidence 223445556655422 111 123456899999999999999988754432 2234455544
No 40
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.06 E-value=1.7e-09 Score=90.41 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=84.4
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc-----cce-EEEEechhhhccCchH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF-----EGS-SFLADVREKFKNKGSV 96 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~ 96 (218)
....++||+.++..+...+.. ...+.++|+|++|+|||++|+.+++.+.... ... ++..++...+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r---~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~------ 248 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY------ 248 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCcHHHHHHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc------
Confidence 345699999999999999976 2345678999999999999999999763321 111 1111111000
Q ss_pred HHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHh--
Q 047309 97 ISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLK-- 174 (218)
Q Consensus 97 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~-- 174 (218)
. ......+...+.......+.+|++| ...+....+...+. ....++|.+|.......
T Consensus 249 -----------~------g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 249 -----------R------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred -----------c------chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHh
Confidence 0 0000112223333334567799999 22222222333322 23355666555443211
Q ss_pred -----hcCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 175 -----TYGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 175 -----~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
..+.+..+.+.+.+.++..++++..+..
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 1234567999999999999999976543
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.05 E-value=4.7e-09 Score=85.77 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=84.9
Q ss_pred cccccccccchhHHHHHHhhhcC---------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG---------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~---------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..-..++|++..++.|..++... .....+.++|+|++|+|||+||+.++...... ++..++......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc
Confidence 34567999999999998888320 00234689999999999999999998865332 222222221110
Q ss_pred -CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCC---C
Q 047309 93 -KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKR---E 155 (218)
Q Consensus 93 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~---~ 155 (218)
......... ..+.......+.+|+||+++... ....++..+ .
T Consensus 188 ~~g~~~~~~~---------------------~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 188 YVGEGEKLVR---------------------ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ----CHHHHH---------------------HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHH---------------------HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 000111111 11112222455799999996430 111222111 1
Q ss_pred CC-CCCceEEEEeCChhhH--hhcCCC-ceeeCCCCChhHHHHHHHHhhcC
Q 047309 156 WF-GSGSRIIVTSRDEHLL--KTYGMD-EIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 156 ~~-~~~~~ilittr~~~~~--~~~~~~-~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
.. .....||.||...... ...+.. ..+.+.+.+.++..+++...+..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 10 1223444455543211 112233 46889999999999999987643
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.03 E-value=1.6e-09 Score=96.84 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=83.5
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEEechhhhc---cC
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLADVREKFK---NK 93 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~~~~~~~~---~~ 93 (218)
....++||+.++..+.+.+.. ...+.++|+|++|+|||+||+.+++.+.... ...++..++..... ..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~---~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC---SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCcccCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 345689999999999999976 3345678999999999999999999763211 11222222222110 00
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhC-CCeEEEEEeCCCChh---------Hh-hHHhcCCCCCCCCce
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQ-HKKVLLVIDDVVDIK---------QL-EYLAGKREWFGSGSR 162 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~~~~---------~~-~~l~~~~~~~~~~~~ 162 (218)
+.....+ ...+..... +++.+|+||+++... .. ..+...+. .....
T Consensus 245 g~~~~~l---------------------~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~ 301 (854)
T 1qvr_A 245 GEFEERL---------------------KAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELR 301 (854)
T ss_dssp -CHHHHH---------------------HHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCC
T ss_pred hHHHHHH---------------------HHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeE
Confidence 0011111 122222222 467899999997542 11 11111111 23345
Q ss_pred EEEEeCChhhH------hhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 163 IIVTSRDEHLL------KTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 163 ilittr~~~~~------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
+|.+|...... ...+....+.+++++.++..++++...
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred EEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 66655543321 112345679999999999999997543
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-08 Score=83.06 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=96.3
Q ss_pred cccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
.+-....|-++..++|.+.+.- ..-..++-++++||||+|||.||++++......| +.....+...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~s 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQ 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhc
Confidence 3445688899898888776632 0113456788999999999999999999765442 2223333222
Q ss_pred cC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCC
Q 047309 92 NK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKR 154 (218)
Q Consensus 92 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~ 154 (218)
.+ +.....++.++ ...-...+.+|+||+++... .+..++..+
T Consensus 221 k~vGese~~vr~lF---------------------~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 221 KYIGEGSRMVRELF---------------------VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp SSTTHHHHHHHHHH---------------------HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH---------------------HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 11 11122222222 22223678899999997421 122233222
Q ss_pred CCC--CCCceEEEEeCChhhH----hh-cCCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 155 EWF--GSGSRIIVTSRDEHLL----KT-YGMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 155 ~~~--~~~~~ilittr~~~~~----~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
... ..+..||.||...+.. .+ .+-+..++++.-+.++..++|+.++.+... .+-++..+|+
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~ 348 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 211 2223344455544321 11 133667999999999999999988755432 2334566654
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.02 E-value=4.2e-09 Score=84.26 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=87.0
Q ss_pred cccccccccchhHHHHHHhhhcCC--CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHH
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP--NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISF 99 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~--~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 99 (218)
.....++|++..++.+..++.... ....+.++|+|++|+|||+||+.+++.....| ..+ +.... .. ...
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~-~~~~~-~~---~~~- 96 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTT-AAPMI-EK---SGD- 96 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEE-EGGGC-CS---HHH-
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEe-cchhc-cc---hhH-
Confidence 355679999999999999886521 13445789999999999999999988754332 112 22111 00 111
Q ss_pred HHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh--HhhHHhcCCCCC------------------CC
Q 047309 100 QRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK--QLEYLAGKREWF------------------GS 159 (218)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~--~~~~l~~~~~~~------------------~~ 159 (218)
....+ .. ..+..+|+||+++... ....+...+... .+
T Consensus 97 ~~~~~---------------------~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 97 LAAIL---------------------TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp HHHHH---------------------HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred HHHHH---------------------Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 11111 11 1345699999997532 222222111100 11
Q ss_pred CceEEEEeCChhh-Hh-hcCC-CceeeCCCCChhHHHHHHHHhhc
Q 047309 160 GSRIIVTSRDEHL-LK-TYGM-DEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 160 ~~~ilittr~~~~-~~-~~~~-~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
...+|.+|..... .. .... ...+.+.+++.++..+++...+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 2455555554321 11 1222 36799999999999999998764
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.02 E-value=2.4e-08 Score=78.77 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=91.2
Q ss_pred cccccccccchhHHHHHHhhhcC----------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
..-..++|.+..++.|.+++... .-...+.++|+|++|+|||+||+.++......| +.+ +...
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~~~~--- 84 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-KGPE--- 84 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-CHHH---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-EhHH---
Confidence 34556999999999988877531 113456789999999999999999998764221 112 2111
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhH----------------hhHHhcCCC
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQ----------------LEYLAGKRE 155 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~----------------~~~l~~~~~ 155 (218)
+...+ .+. ....+...+.......+.+|+||+++.... ...++..+.
T Consensus 85 -------l~~~~----~g~------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 85 -------LLTMW----FGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp -------HHHHH----HTT------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred -------HHhhh----cCc------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 11111 111 111223334433345678999999974211 122322221
Q ss_pred C--CCCCceEEEEeCChhhH-hh-cC---CCceeeCCCCChhHHHHHHHHhhcC
Q 047309 156 W--FGSGSRIIVTSRDEHLL-KT-YG---MDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 156 ~--~~~~~~ilittr~~~~~-~~-~~---~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
. ...+..||.||...+.. .. .+ -...+.+.+.+.++..++++.++..
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 1 12334555566654321 11 12 2457899999999999999887644
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=7.9e-09 Score=82.88 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=88.9
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEEEechhhhccCchHHHHHH
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFLADVREKFKNKGSVISFQR 101 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
.-..++|.+..++.|..++... +.+.++++|++|+||||+++.+++.+... +...+.-.+.... .. .. ..+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g---~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~---~~-~~-~ir 94 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD---RG-ID-VVR 94 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC---CS-HH-HHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc---cc-HH-HHH
Confidence 3455889999999999998763 22338899999999999999999975322 2211111122110 11 11 122
Q ss_pred HHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-hHh-hcC
Q 047309 102 QLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-LLK-TYG 177 (218)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~~~-~~~ 177 (218)
.....+..... ...+..-++|+|+++.. .....+...+........+++++.... +.. ..+
T Consensus 95 ~~i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 95 NQIKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp THHHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 22222211000 01134668999999753 223333332222234556666665432 111 123
Q ss_pred CCceeeCCCCChhHHHHHHHHhh
Q 047309 178 MDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 178 ~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
....+.+.+++.++..+.+...+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHH
Confidence 45678999999999999988766
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.97 E-value=1e-09 Score=77.33 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=36.9
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|++..++++.+.+.... .....|+|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988875422 233568899999999999999998854
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.97 E-value=2.3e-08 Score=83.07 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=94.8
Q ss_pred ccccccccccchhHHHHHHhhhc---------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 21 SETLKKLVGIDSRLEELRSLMNK---------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~---------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
+..-..++|.+...+.|.+++.. ......+.++|+|++|+|||+||+.+++..... .++..+......
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~---~~~~v~~~~l~~ 206 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLVS 206 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS---EEEEECCC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC---CEEEEeHHHHHh
Confidence 34556799999999999887731 001234689999999999999999999876211 111112221100
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-------------hHhhHHhcCCCCC-
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-------------KQLEYLAGKREWF- 157 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-------------~~~~~l~~~~~~~- 157 (218)
.. .+ .....+...+.......+.+|+||+++.. .....++..+...
T Consensus 207 ----------~~----~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 207 ----------KW----LG------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred ----------hh----cc------hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 00 00 00111222222222356789999999754 1123444433221
Q ss_pred --CCCceEEEEeCChhhHh--hcCC-CceeeCCCCChhHHHHHHHHhhcCCCC--CCchhHhhhc
Q 047309 158 --GSGSRIIVTSRDEHLLK--TYGM-DEIYKPNELNYHDALQLFNMKAFKIQK--PLEECVQLSE 215 (218)
Q Consensus 158 --~~~~~ilittr~~~~~~--~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~--~~~~~~~i~~ 215 (218)
..+..||.||....... ..+. ...+.+++.+.++..++++.++..... .+..+..|++
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 23345555665542211 1223 357889999999999999988754321 3344555543
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.96 E-value=4.1e-08 Score=77.06 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=42.6
Q ss_pred cccccccccccchhHHHHHHhhhcC---------CCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKG---------PNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~---------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++..-..++|.+..++.+.+++... .....+.++|+|++|+|||++|+.+++...
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3445567999999999998887331 012346889999999999999999998764
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.96 E-value=7.8e-09 Score=91.39 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=88.3
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc------ccceEEEEechhhhc---cCc
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE------FEGSSFLADVREKFK---NKG 94 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~------~~~~~~~~~~~~~~~---~~~ 94 (218)
...++||+.++..+.+.+.. .....++|+|++|+|||++|+.+++.+... ....++......... ..+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR---RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 34689999999999999976 345678899999999999999999865321 111222222211110 000
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------hHhhHHhcCCCCCCCCceEE
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------KQLEYLAGKREWFGSGSRII 164 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------~~~~~l~~~~~~~~~~~~il 164 (218)
.+...+. ..+......++.+|+||+++.. .+...++..+.. .....+|
T Consensus 262 ~~e~~l~---------------------~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I 319 (758)
T 1r6b_X 262 DFEKRFK---------------------ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVI 319 (758)
T ss_dssp CHHHHHH---------------------HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEE
T ss_pred hHHHHHH---------------------HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEE
Confidence 0111111 1222222345689999999754 122233333321 2345666
Q ss_pred EEeCChhhHhh-------cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 165 VTSRDEHLLKT-------YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 165 ittr~~~~~~~-------~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
.+|...+.... ......+.+.+.+.++..+++...+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66654332111 1224579999999999999988654
No 51
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=3.6e-09 Score=77.06 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=34.2
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 30 IDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 30 R~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+...++.+.+++..........++|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455566666666554334467899999999999999999999764
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.92 E-value=5.4e-09 Score=80.94 Aligned_cols=158 Identities=14% Similarity=0.197 Sum_probs=86.6
Q ss_pred cccccccccchhHHHHHHhhhcC---------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKG---------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~---------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
.....++|.+..++.+.+.+... .....+.++|+|++|+|||+||+.+++.....|-. + +.......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~ 83 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM 83 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh
Confidence 34567999999999988776520 00223458899999999999999999876443211 1 11111000
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-----------------HhhHHhcCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-----------------QLEYLAGKRE 155 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-----------------~~~~l~~~~~ 155 (218)
. .+ .. ...+...+.......+.+|+||+++... .+..++..+.
T Consensus 84 ~--------------~~---~~---~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 84 F--------------VG---LG---ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp C--------------SS---SC---SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred h--------------cc---hH---HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 0 00 00 0111122222223456799999996431 1222332222
Q ss_pred CCC---CCceEEEEeCChhhHh-h-c---CCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 156 WFG---SGSRIIVTSRDEHLLK-T-Y---GMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 156 ~~~---~~~~ilittr~~~~~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
... ....+|.||....... . . .....+.+.+.+.++..++++.++...
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~ 199 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV 199 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC
Confidence 111 1234555555443211 1 1 223568899999999999998876543
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.91 E-value=1.6e-08 Score=79.83 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=39.0
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|++..+.++.+.+.... .....|+|+|++|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 358999999999988876532 2345788999999999999999998653
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=7.3e-08 Score=79.37 Aligned_cols=169 Identities=19% Similarity=0.241 Sum_probs=95.2
Q ss_pred cccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
.+-....|-++.+++|.+.+.. .+-..++-++++||+|+|||.||+++++.....| +........+
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcc
Confidence 3445678888888888776632 0114457899999999999999999999765432 2223333222
Q ss_pred cC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCC
Q 047309 92 NK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKR 154 (218)
Q Consensus 92 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~ 154 (218)
.+ +......+.+ +...-...+.+|+||+++... .+..++..+
T Consensus 254 k~~Gese~~ir~~---------------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 254 KYIGESARIIREM---------------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp SSSSHHHHHHHHH---------------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH---------------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 11 1111112222 222223678999999997321 122333222
Q ss_pred C--CCCCCceEEEEeCChhhHh-hc-C---CCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 155 E--WFGSGSRIIVTSRDEHLLK-TY-G---MDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 155 ~--~~~~~~~ilittr~~~~~~-~~-~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
. ....+..||.||...+... .+ + -+..++++.-+.++..++|+.++.+... ..-++..+|+
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 1 1122334555665443221 11 1 2456889888999999999887755432 2334555553
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.90 E-value=5.2e-08 Score=77.93 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=88.2
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHH
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVE 106 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (218)
+...+...+.+.+.+... .-...++++|++|+|||++|+.+++.+....... .. .+. ....+..+...
T Consensus 4 ~pw~~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~-~c~--------~c~~c~~~~~~ 71 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK-SCG--------HCRGCQLMQAG 71 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB-CCS--------CSHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC-CCC--------CCHHHHHHhcC
Confidence 344566777787777652 2235789999999999999999999763221100 00 000 00001111000
Q ss_pred ----HhhccCC---CcccccccHHHHHHhh----CCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCChh-h
Q 047309 107 ----ILKLEKD---SIWNVGDGINILGSRL----QHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDEH-L 172 (218)
Q Consensus 107 ----~~~~~~~---~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~~-~ 172 (218)
+....+. .....+.+...+.... .+++-++|||+++.. .....++..+..-..+..+|++|.+.. +
T Consensus 72 ~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 72 THPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp CCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CCCCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 0000000 0111111222221111 245679999999864 334555544443344566777776653 2
Q ss_pred Hhh-cCCCceeeCCCCChhHHHHHHHHhh
Q 047309 173 LKT-YGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 173 ~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
... .+....+.+.+++.++..+++.+..
T Consensus 152 ~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 152 LATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred cHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 222 3456789999999999999998875
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.90 E-value=1.3e-08 Score=89.94 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=84.5
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc------cceEEEEechhhhccCchHH
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF------EGSSFLADVREKFKNKGSVI 97 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 97 (218)
...++||+.+++.+...+.. .....++++|++|+|||++|+.+++.+.... ...++..+....+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~---~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~------- 248 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY------- 248 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCccCchHHHHHHHHHHhC---CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc-------
Confidence 44699999999999999976 3345688999999999999999999763211 1111111110000
Q ss_pred HHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHh---
Q 047309 98 SFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLK--- 174 (218)
Q Consensus 98 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~--- 174 (218)
.......+...+......++.+|+|| ...+....+...+. .....+|.+|.......
T Consensus 249 ----------------~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 249 ----------------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred ----------------cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 00011122333333444667899999 22222223333322 33456666655443211
Q ss_pred ----hcCCCceeeCCCCChhHHHHHHHHhhc
Q 047309 175 ----TYGMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 175 ----~~~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..+....+.+.+.+.++..++++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 112356799999999999999997653
No 57
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=5.6e-08 Score=80.15 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=93.8
Q ss_pred ccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
+-....|-++..++|.+.+.- ..-..++-++++||+|+|||.||++++.+....| +.....+....
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk 282 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQK 282 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcc
Confidence 344688888888888776522 1114567889999999999999999999765442 22233332221
Q ss_pred -CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCC
Q 047309 93 -KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKRE 155 (218)
Q Consensus 93 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~ 155 (218)
.+.....++.+ +.......+.+|+||+++... .+..++..+.
T Consensus 283 ~vGesek~ir~l---------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 283 YVGEGARMVREL---------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp SSSHHHHHHHHH---------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH---------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 11112222222 222223678899999996321 1122222221
Q ss_pred CC-CCCc-eEEEEeCChhh----Hhhc-CCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 156 WF-GSGS-RIIVTSRDEHL----LKTY-GMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 156 ~~-~~~~-~ilittr~~~~----~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.. ..+. .||.||...+. ..+- +-+..++++.-+.++..++|+.++.+... .+-.++.||+
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~ 409 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR 409 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 11 2222 33445544322 1111 23567899999999999999888755432 2234555543
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.89 E-value=7.8e-09 Score=79.94 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=35.8
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
-..++|++..+.++.+.+.... .....++|+|++|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3458999999998877665422 2336788999999999999999998654
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.85 E-value=1.7e-08 Score=79.75 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=40.4
Q ss_pred cccccccchhHHHHHHhhhcC------CCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG------PNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...++|.+..++.+...+... .......++++|++|+|||++|+.+++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 345889999999988877542 11123579999999999999999999976443
No 60
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.2e-08 Score=82.40 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=94.3
Q ss_pred cccccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhh
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREK 89 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~ 89 (218)
+..+-..+.|-++..++|.+.+.. ..-..++-++++||||+|||.||++++......| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 334556788999999888776422 1114467899999999999999999999764432 22233332
Q ss_pred hccC-chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh-------h---------HhhHHhc
Q 047309 90 FKNK-GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI-------K---------QLEYLAG 152 (218)
Q Consensus 90 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~-------~---------~~~~l~~ 152 (218)
...+ +......+.++. ..-...+.+|+||+++.. . .+..++.
T Consensus 252 ~~~~vGese~~ir~lF~---------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFA---------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp CSSCSSHHHHHHHHHHH---------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHH---------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 2211 111222222222 122356889999998521 0 1122333
Q ss_pred CCCCCC--CCceEEEEeCChhhHh-hc----CCCceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 153 KREWFG--SGSRIIVTSRDEHLLK-TY----GMDEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 153 ~~~~~~--~~~~ilittr~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.+.... .+..||.||...+... .+ +-+..++++.-+.++..++|+.++.+... .+-.+..||+
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~ 381 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 222112 2223444555443211 11 12456889988999999999877654322 2234555554
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.84 E-value=2.3e-08 Score=78.59 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++.++++|++|+|||+||+.+++.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456889999999999999999999874
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=2.7e-08 Score=76.56 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=84.8
Q ss_pred ccccccccccchhHHHHHHhhhc---C------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 21 SETLKKLVGIDSRLEELRSLMNK---G------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 21 ~~~~~~~~gR~~e~~~l~~~l~~---~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
+..-..++|.+...+++.+.+.. . .....+.++|+|++|+|||+||+.++......| +.+ +......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHH
Confidence 34556799999888887665432 1 002245688999999999999999998764332 222 2221111
Q ss_pred cCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------------hHhhHHhcCCC
Q 047309 92 NKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------------KQLEYLAGKRE 155 (218)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------------~~~~~l~~~~~ 155 (218)
.. .......+...+.......+.++++|+++.. ..+..++..+.
T Consensus 84 ~~--------------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 84 MF--------------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp SC--------------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred Hh--------------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 00 0000111222333333455779999998421 11222222111
Q ss_pred C--CCCCceEEEEeCChh-hHhhc----CCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 156 W--FGSGSRIIVTSRDEH-LLKTY----GMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 156 ~--~~~~~~ilittr~~~-~~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
. ...+..+|.||...+ +...+ .-...+.+.+.+.++..++++.++..
T Consensus 144 ~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 122344555665543 21111 12356888888999989998877643
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=5.2e-08 Score=79.62 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=94.3
Q ss_pred cccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFK 91 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
.+-..+.|-++..++|.+.+.. ..-..++-++++||+|+|||.||++++......| +.....+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhh
Confidence 4445688888888888776632 1114457899999999999999999999765442 2223333222
Q ss_pred c-CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCC
Q 047309 92 N-KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKR 154 (218)
Q Consensus 92 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~ 154 (218)
. .+.....++.++. ..-...+.+|+||+++... .+..++..+
T Consensus 255 k~vGesek~ir~lF~---------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFK---------------------VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp SSSSHHHHHHHHHHH---------------------HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHH---------------------HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 1 1112222222222 2223668899999986310 122232222
Q ss_pred CC--CCCCceEEEEeCChhhHh-hc-C--C-CceeeCCCCChhHHHHHHHHhhcCCCC-CCchhHhhhc
Q 047309 155 EW--FGSGSRIIVTSRDEHLLK-TY-G--M-DEIYKPNELNYHDALQLFNMKAFKIQK-PLEECVQLSE 215 (218)
Q Consensus 155 ~~--~~~~~~ilittr~~~~~~-~~-~--~-~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~i~~ 215 (218)
.. ...+..||.||...+... .+ + . +..++++.-+.++..++|+.++.+... .+-++..+|.
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 11 122233444555443321 11 1 2 456888888999999999888754432 2334555554
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.80 E-value=1.5e-07 Score=78.51 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=88.7
Q ss_pred cccccccccchhHHHHHHhhhcCC---------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP---------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~---------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
..-..++|.+..++++.+.+.... -.-++.++|+|++|+|||+||+.++......| +..+..+....
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~ 88 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVEL 88 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHH
Confidence 344569999988888776653211 12234588999999999999999998764332 22232222111
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------------hHhhHHhcCCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------------KQLEYLAGKREW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------------~~~~~l~~~~~~ 156 (218)
.. .. ....+...+.....+.+.+|+||+++.. ..+..++..+..
T Consensus 89 ~~--g~------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 89 FV--GV------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp CT--TH------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred Hh--cc------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 10 00 0011223334444467889999999542 112233322110
Q ss_pred --CCCCceEEEEeCChhhHh-h-cC--C-CceeeCCCCChhHHHHHHHHhhcCC
Q 047309 157 --FGSGSRIIVTSRDEHLLK-T-YG--M-DEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 157 --~~~~~~ilittr~~~~~~-~-~~--~-~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
...+..||.+|...+... . .+ . ...+.+++.+.++..++++.++...
T Consensus 149 ~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~ 202 (476)
T 2ce7_A 149 FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK 202 (476)
T ss_dssp SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC
Confidence 123345555666554322 1 11 2 3478899999988888988776543
No 65
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.80 E-value=6.6e-08 Score=85.14 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=94.3
Q ss_pred cccccccchhHHHHHHhhhc----C------CCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccC
Q 047309 24 LKKLVGIDSRLEELRSLMNK----G------PNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNK 93 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~----~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
-....|-++.+++|.+++.- + .-..++-|+++|++|+|||+||+.++++...+ ++..+..+....+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc
Confidence 34578889999888877632 1 11345789999999999999999999876433 2332333322111
Q ss_pred -chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCC--
Q 047309 94 -GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF-- 157 (218)
Q Consensus 94 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~-- 157 (218)
+.... .+...+.......+.+|+||+++... ....++..+...
T Consensus 279 ~gese~---------------------~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 279 AGESES---------------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp TTHHHH---------------------HHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred chHHHH---------------------HHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 10111 12233333445678999999996421 122222222111
Q ss_pred CCCceEEEEeCChh-hHhhc----CCCceeeCCCCChhHHHHHHHHhhcCCC-CCCchhHhhhc
Q 047309 158 GSGSRIIVTSRDEH-LLKTY----GMDEIYKPNELNYHDALQLFNMKAFKIQ-KPLEECVQLSE 215 (218)
Q Consensus 158 ~~~~~ilittr~~~-~~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~~~~~~~i~~ 215 (218)
..+..||.+|...+ +...+ .-...+++..-+.++..++|+.+..+.. ..+-.+..+|.
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~ 401 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 12223333444432 21222 2245799999999999999998865433 23334555554
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.79 E-value=3.3e-08 Score=87.43 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=84.4
Q ss_pred ccccccchhHHHHHHhhhcCC----C--CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHH
Q 047309 25 KKLVGIDSRLEELRSLMNKGP----N--DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVIS 98 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~----~--~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
..++|.+..++.+.+.+.... . .....++++|++|+|||++|+.+++.+.......+.+ ++.+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 458999999988877775411 1 1223699999999999999999999764332333334 444432211100
Q ss_pred HHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCC-----------CCCCceEEE
Q 047309 99 FQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREW-----------FGSGSRIIV 165 (218)
Q Consensus 99 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~-----------~~~~~~ili 165 (218)
...+...++. ...-+|+||+++.. .....++..+.. ...+..+|+
T Consensus 568 -------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 1111222221 22349999999753 223333222111 123457777
Q ss_pred EeCCh-----------------hhHhhcCCCceeeCCCCChhHHHHHHHHhh
Q 047309 166 TSRDE-----------------HLLKTYGMDEIYKPNELNYHDALQLFNMKA 200 (218)
Q Consensus 166 ttr~~-----------------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 200 (218)
||... ++..++ ...+.+.|++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 77631 111222 3689999999999998887654
No 67
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.4e-08 Score=78.86 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=41.4
Q ss_pred cccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+-....|-++..+.|.+.+.. .+-..++-++++||+|+|||.||+++++.....
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445688999888888776632 111445778999999999999999999976533
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.78 E-value=4.1e-08 Score=77.31 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=39.7
Q ss_pred cccccccchhHHHHHHhhhcC-----------CCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 24 LKKLVGIDSRLEELRSLMNKG-----------PNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~-----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+.++|++..++.+...+... .......++++|++|+|||++|+.+++.+.
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999998777540 002346788999999999999999998764
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=6.2e-08 Score=76.49 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=86.8
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc---ccccceEEEEechhhhccCchHHHHHHHHHH
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS---HEFEGSSFLADVREKFKNKGSVISFQRQLLV 105 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (218)
|.++.++.|.+.+... +.+..+++|++|+|||++|+.+++... ........+ +.... .. -.+..+.+..
T Consensus 1 g~~~~~~~L~~~i~~~---~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l-~~~~~--~~--~id~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEI-DPEGE--NI--GIDDIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEE-CCSSS--CB--CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC---CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEE-cCCcC--CC--CHHHHHHHHH
Confidence 4566778888888763 367899999999999999999987521 112223333 21110 01 1222333443
Q ss_pred HHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh-hhHhhcCCCcee
Q 047309 106 EILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE-HLLKTYGMDEIY 182 (218)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~-~~~~~~~~~~~~ 182 (218)
.+...+. .++.-++|||+++.. .....++..+..-.+.+.+|++|.+. .+...+... .+
T Consensus 73 ~~~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 73 FLNYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHTSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHhhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 3221110 144569999999864 33455554444334566777766554 333333223 89
Q ss_pred eCCCCChhHHHHHHHHhh
Q 047309 183 KPNELNYHDALQLFNMKA 200 (218)
Q Consensus 183 ~l~~L~~~e~~~l~~~~~ 200 (218)
++.+++.++..+.+.+.+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998876
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.74 E-value=2.5e-09 Score=75.11 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=35.5
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|++..++++.+.+.... .....|+|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 58999999999988875422 2235688999999999999998887543
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.71 E-value=3.7e-07 Score=69.97 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=81.5
Q ss_pred cccccccccchhHHHHHHhhhcCC---------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGP---------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~---------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
...+.++|.+....++.+...... -.-.+-++|+|++|+|||||++.++...... .+.+ +.......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~-~~~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITA-SGSDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEE-EHHHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEe-eHHHHHHH
Confidence 455678998877766655442210 0112238899999999999999999866421 2222 21111100
Q ss_pred CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCC
Q 047309 93 KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREW 156 (218)
Q Consensus 93 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~ 156 (218)
.. ... ...+...+.......+.++++|+++... ....+...+..
T Consensus 89 ~~--~~~------------------~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 89 FV--GVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp CT--THH------------------HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred Hh--hHH------------------HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 00 000 0011112222222446799999984211 11222222211
Q ss_pred C-CCCceEE-EEeCChhhHhh-----cCCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 157 F-GSGSRII-VTSRDEHLLKT-----YGMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 157 ~-~~~~~il-ittr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
. .....++ .+|...+.... ......+.+++.+.++..++++.++.+.
T Consensus 149 ~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~ 202 (254)
T 1ixz_A 149 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 202 (254)
T ss_dssp CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC
Confidence 1 1222233 35555543221 1235678999999999999998776443
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=3.2e-08 Score=69.90 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
....++|+|++|+|||+|++.++...........++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 346899999999999999999998765432224444
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.66 E-value=9.2e-07 Score=68.76 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=83.6
Q ss_pred cccccccccccchhHHHHHHhhhcCC---------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGP---------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF 90 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~---------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~ 90 (218)
+....+.++|.+....++.+...... -.-.+-++|+|++|+|||||++.++..... ..+.+ +.....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~-~~~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITA-SGSDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEE-EHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEe-cHHHHH
Confidence 44556679998887777765543210 011223889999999999999999987642 12222 221110
Q ss_pred ccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCCh----------------hHhhHHhcCC
Q 047309 91 KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDI----------------KQLEYLAGKR 154 (218)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~----------------~~~~~l~~~~ 154 (218)
... ..... ..+...+.......+.++++|+++.. ..+..+...+
T Consensus 111 ~~~--~~~~~------------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 170 (278)
T 1iy2_A 111 EMF--VGVGA------------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170 (278)
T ss_dssp HST--TTHHH------------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHH
T ss_pred HHH--hhHHH------------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 000 00000 01112222222244679999998521 0112222222
Q ss_pred CCCC-CCceEE-EEeCChhhHh-----hcCCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 155 EWFG-SGSRII-VTSRDEHLLK-----TYGMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 155 ~~~~-~~~~il-ittr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
.... +...++ .++...+... .......+++.+.+.++..++++.++.+.
T Consensus 171 sgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~ 226 (278)
T 1iy2_A 171 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 226 (278)
T ss_dssp TTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC
Confidence 2111 222233 3555543321 11235678999999999999998776443
No 74
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.63 E-value=2.8e-07 Score=68.15 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=41.9
Q ss_pred cccccccccch----hHHHHHHhhhcCCCC-CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 22 ETLKKLVGIDS----RLEELRSLMNKGPND-DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 22 ~~~~~~~gR~~----e~~~l~~~l~~~~~~-~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..-+.|++.+. .++.+.+++...... ..+.++|+|++|+|||+||+.++.........+.++
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34556776543 445566666553211 227899999999999999999999775554445555
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.59 E-value=6.4e-07 Score=75.18 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=84.1
Q ss_pred cccccccccccchhHHHHHHhhhcCC---------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhh
Q 047309 20 KSETLKKLVGIDSRLEELRSLMNKGP---------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKF 90 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~~l~~~l~~~~---------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~ 90 (218)
+......++|.+....++.+...... -.-.+-++|+|++|+|||+||+.++...... .+.+ +.....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i-~g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITA-SGSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEE-EGGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEE-ehhHHH
Confidence 34455679999888777766553210 0112348999999999999999999876422 2222 222211
Q ss_pred ccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhh----CCCeEEEEEeCCCCh----------------hHhhHH
Q 047309 91 KNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRL----QHKKVLLVIDDVVDI----------------KQLEYL 150 (218)
Q Consensus 91 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~livlD~~~~~----------------~~~~~l 150 (218)
... ... ....+...+ ...+.++++|+++.. ..+..+
T Consensus 102 ~~~--~g~----------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 102 EMF--VGV----------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp SSC--TTH----------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred Hhh--hhh----------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 110 000 011111122 124579999999532 112233
Q ss_pred hcCCCCC-CCC-ceEEEEeCChhhHhh-----cCCCceeeCCCCChhHHHHHHHHhhcC
Q 047309 151 AGKREWF-GSG-SRIIVTSRDEHLLKT-----YGMDEIYKPNELNYHDALQLFNMKAFK 202 (218)
Q Consensus 151 ~~~~~~~-~~~-~~ilittr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~ 202 (218)
+..+... .+. ..++.+|...+.... ...+..+.+.+.+.++..++++.++.+
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 216 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc
Confidence 3222211 122 233335555443221 122457899999999999999887644
No 76
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.57 E-value=1.6e-06 Score=77.03 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=87.2
Q ss_pred ccccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKN 92 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
....++|.+..+++|.+++.. ..-.....++|+|++|+|||+||+.++......| +.+ +.......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 445699999999999888753 0114456799999999999999999998764332 222 32221111
Q ss_pred -CchHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCC-
Q 047309 93 -KGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF- 157 (218)
Q Consensus 93 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~- 157 (218)
........ ...+.......+.++++|+++... ....++..+...
T Consensus 278 ~~g~~~~~l---------------------~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 278 LAGESESNL---------------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp STTHHHHHH---------------------HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred hhhhHHHHH---------------------HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Confidence 01011111 112222222456799999984211 112222211111
Q ss_pred -CCCceEEEEeCChh-hHhhc----CCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 158 -GSGSRIIVTSRDEH-LLKTY----GMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 158 -~~~~~ilittr~~~-~~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
.....++.+|.... +...+ .....+.+...+.++..++++.++...
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 22334455555432 21111 123568899999999999999876543
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.53 E-value=1.5e-06 Score=73.96 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=36.4
Q ss_pred cccccchhHHHHHHhhhc---CCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 26 KLVGIDSRLEELRSLMNK---GPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~---~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+|-++..+.+...+.- ........++++|++|+|||+||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367777777776554421 111345689999999999999999999876433
No 78
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.53 E-value=6.4e-06 Score=63.96 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=77.2
Q ss_pred cccccccchhHHHHHHhhhc----------CCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccC
Q 047309 24 LKKLVGIDSRLEELRSLMNK----------GPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNK 93 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~----------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
-..+.|-++..+.|.+.+.. ..-.-.+-++|+|++|+|||||++.++...... .+++ .........
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i-~g~~l~~~~ 84 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISV-KGPELLNMY 84 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEE-ETTTTCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEE-EcHHHHhhh
Confidence 34466666666666554311 000112238999999999999999999865331 2223 222211111
Q ss_pred chHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh-------------HhhHHhcCCCCC-CC
Q 047309 94 GSVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK-------------QLEYLAGKREWF-GS 159 (218)
Q Consensus 94 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~-------------~~~~l~~~~~~~-~~ 159 (218)
....... + ...+.......+.++++|+++... ....+...+... ..
T Consensus 85 --~~~~~~~-i-----------------~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 85 --VGESERA-V-----------------RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp --THHHHHH-H-----------------HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred --hhHHHHH-H-----------------HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 1111111 1 111111112456799999986421 011222111111 11
Q ss_pred -CceEEEEeCChhhHhh--c---CCCceeeCCCCChhHHHHHHHHhhc
Q 047309 160 -GSRIIVTSRDEHLLKT--Y---GMDEIYKPNELNYHDALQLFNMKAF 201 (218)
Q Consensus 160 -~~~ilittr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~ 201 (218)
..-++.+|...+.... . .-...+.+..-+.++..++++.+..
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 2233345655543221 1 2356789999999999999988763
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.45 E-value=7.5e-07 Score=74.22 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=39.8
Q ss_pred ccccccccchhHHHHHHhhhc--CCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNK--GPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~--~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
....++|.+...+.+..++.. ......+.++++|++|+|||+||+.+++.+..
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 346799999988876655532 11133467889999999999999999998753
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.44 E-value=1.3e-06 Score=77.30 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHhhhcC------CCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 25 KKLVGIDSRLEELRSLMNKG------PNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~------~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.+..++.+.+.+... .......++++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35889999998887776431 11223478999999999999999999877
No 81
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.42 E-value=3.7e-07 Score=74.08 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=37.1
Q ss_pred ccccccchhHHHHHHhhh----c-----------------------CCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 25 KKLVGIDSRLEELRSLMN----K-----------------------GPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~----~-----------------------~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|.+...+.|...+. . ........++++|++|+|||++|+.+++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 357898888888877662 0 0012235688999999999999999998763
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.41 E-value=1.4e-06 Score=78.04 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=38.9
Q ss_pred ccccccchhHHHHHHhhhcC----CC--CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 25 KKLVGIDSRLEELRSLMNKG----PN--DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~----~~--~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..++|.+..++.+...+... .+ .....++++|++|+|||++|+.+++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999999987777541 11 12257899999999999999999987643
No 83
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.38 E-value=1.3e-06 Score=69.05 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=41.4
Q ss_pred ccccccccc----chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEE
Q 047309 22 ETLKKLVGI----DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFL 83 (218)
Q Consensus 22 ~~~~~~~gR----~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~ 83 (218)
..-..|++. ...+..+.+++..........++|+|++|+|||+||..+++.+. .....+.++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 344556653 33455566777653322357889999999999999999999776 544444444
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.26 E-value=1.7e-06 Score=72.68 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|++..++.+...+... ..++|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 56899999999988887653 5888999999999999999998663
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.23 E-value=2.8e-06 Score=74.92 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=78.6
Q ss_pred ccccccchhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCc
Q 047309 25 KKLVGIDSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKG 94 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
....|-++..++|.+.+.... -...+-++++||+|+|||.||+.++...... ++.....+....+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~~~l~s~~- 551 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPELLTMW- 551 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCHHHHHTTT-
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEeccchhhccc-
Confidence 345677777777776654311 1334568899999999999999999976432 1121222211100
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccccHHHHHHhhCCCeEEEEEeCCCChh----------------HhhHHhcCCCCCC
Q 047309 95 SVISFQRQLLVEILKLEKDSIWNVGDGINILGSRLQHKKVLLVIDDVVDIK----------------QLEYLAGKREWFG 158 (218)
Q Consensus 95 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~livlD~~~~~~----------------~~~~l~~~~~~~~ 158 (218)
...+...+...|...-...+.+|+||+++... ....++..+....
T Consensus 552 -------------------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 552 -------------------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp -------------------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred -------------------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 00111123333333445678999999986421 1223333222112
Q ss_pred C-CceEEE-EeCChh-hHhh-c---CCCceeeCCCCChhHHHHHHHHhhcCC
Q 047309 159 S-GSRIIV-TSRDEH-LLKT-Y---GMDEIYKPNELNYHDALQLFNMKAFKI 203 (218)
Q Consensus 159 ~-~~~ili-ttr~~~-~~~~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~ 203 (218)
. ...+++ ||...+ +-.. + +-...+.++.-+.++..++|+.+..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC
Confidence 2 223344 333322 2111 1 235667887778888888888776443
No 86
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.13 E-value=7.2e-06 Score=61.06 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.|.+++...- ....++.|.|++|+|||||+..++. .....++|+
T Consensus 8 ~LD~~l~Ggi-~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i 51 (220)
T 2cvh_A 8 SLDSLLGGGF-APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYV 51 (220)
T ss_dssp HHHHHTTSSB-CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEE
T ss_pred HHHHhhcCCC-cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEE
Confidence 3444443211 4567999999999999999999987 222345555
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.99 E-value=6.9e-06 Score=64.79 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..+.+.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999876
No 88
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.95 E-value=8.1e-05 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..|+.... +....++++||+|+|||.+|..+++..
T Consensus 93 l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 455555432 334579999999999999999999853
No 89
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.95 E-value=5.3e-06 Score=66.00 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=40.7
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
....++|++..++.+...+... ..++++|++|+|||+||+.+++.+...
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred hccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456999999999998888653 478899999999999999999876433
No 90
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.94 E-value=1.1e-05 Score=64.81 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=58.1
Q ss_pred chhHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 31 ~~e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
..-+..|.+.|. ..- ...+++.|.|++|+|||||+..++.........++|+ +...... .. ...++..
T Consensus 43 ~TG~~~LD~~Lg~GGi-~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI-d~E~s~~----~~-----ra~rlgv 111 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGY-PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI-DAEHALD----PV-----YAKNLGV 111 (356)
T ss_dssp CCSCHHHHHHTSSSSE-ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSCCCC----HH-----HHHHHTC
T ss_pred cCCCHHHHHHhccCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-ecccccc----hH-----HHHHcCC
Confidence 334556666665 222 5668999999999999999999998765444455666 3333221 11 2222221
Q ss_pred cc----CCCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 110 LE----KDSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 110 ~~----~~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
.. .....+..+....+..... .+.-++|+|.+.
T Consensus 112 ~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 112 DLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred chhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 11 0112233344455554443 456699999874
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.94 E-value=1.4e-05 Score=59.97 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..|.+.+...- ....+++|.|++|+|||||++.++.........+.|+
T Consensus 10 ~~Ld~~~~ggi-~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 10 LDFDKLIQGGI-PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp HHHHGGGTTSE-ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHhcCCC-cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444443211 3457899999999999999999997654333344554
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=8.5e-06 Score=65.03 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=40.1
Q ss_pred ccccccccchhHHHHHHhhhcC--CCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKG--PNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~--~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.-..++|++..++.+...+... .......++++|++|+|||||++.++..+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556899998888888777542 012335789999999999999999999764
No 93
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.93 E-value=1.8e-05 Score=59.40 Aligned_cols=113 Identities=12% Similarity=-0.036 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc-cCCCcccccccHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL-EKDSIWNVGDGINIL 125 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l 125 (218)
....+++++|++|+||||++..++.++..+...+.++........ .. ++..++... .........++...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~----~~----~i~srlG~~~~~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS----IR----NIQSRTGTSLPSVEVESAPEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG----CS----SCCCCCCCSSCCEEESSTHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchH----HH----HHHHhcCCCccccccCCHHHHHHHH
Confidence 456799999999999999999999887655444444421111000 00 111111100 000111222333444
Q ss_pred HHhhCC-CeEEEEEeCCCCh--hHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 126 GSRLQH-KKVLLVIDDVVDI--KQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 126 ~~~l~~-~~~livlD~~~~~--~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
.+...+ +.-+|+||+++.. +.++.+. .+. ..+..|++|.+..
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDK 126 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSB
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEeccc
Confidence 443333 3459999999642 3333332 222 2367899998843
No 94
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.93 E-value=3.1e-06 Score=75.18 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred cccccccchhHHHHHHhhhcCC----------CCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 24 LKKLVGIDSRLEELRSLMNKGP----------NDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~----------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
-...+|.++..+.|.+++.... -...+.++++|++|+|||+||+.++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3457788888888887775311 0234668899999999999999999976433
No 95
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.92 E-value=1.8e-05 Score=58.42 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=36.2
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.|++.++.|.+.+.........+++|.|++|+|||||++.+...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3566777787777654435668999999999999999999988653
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.90 E-value=5.4e-06 Score=60.74 Aligned_cols=36 Identities=17% Similarity=-0.006 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
...+.|++..|.||||+|-..+-+...+.-.+.++.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356667777889999999988887666655555553
No 97
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.88 E-value=0.00019 Score=56.71 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=34.0
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
-+..|.+++... ..+.+++|.|++|+|||+|+..++.........++|+
T Consensus 54 G~~~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 54 GFTELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp SCHHHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ChHHHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 344455555222 4567999999999999999999987654443456666
No 98
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.88 E-value=1.6e-05 Score=64.19 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=38.0
Q ss_pred cccccchhHHHHHHhhh------------cCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 26 KLVGIDSRLEELRSLMN------------KGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~------------~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.+..++.+...+. .......+.++++|++|+|||++|+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47999999998887772 11112346789999999999999999998763
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.85 E-value=3.4e-05 Score=62.03 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=62.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccc-eEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEG-SSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGS 127 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
...++|.|++|+|||||++.++..+...... +..+....+...... . ....+. ............+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~--~--------~~v~q~-~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK--K--------CLVNQR-EVHRDTLGFSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--S--------SEEEEE-EBTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc--c--------cceeee-eeccccCCHHHHHHH
Confidence 4699999999999999999998865433222 222211111000000 0 000000 000111234557778
Q ss_pred hhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhH
Q 047309 128 RLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLL 173 (218)
Q Consensus 128 ~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~ 173 (218)
.+...+-+|++|+..+...+..+.... ..|..+++|+...+..
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 888888899999998766555443321 3466688888876443
No 100
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.81 E-value=3.1e-05 Score=60.95 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=34.3
Q ss_pred HHHHHhhh----cCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc--ccceEEEEechh
Q 047309 35 EELRSLMN----KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE--FEGSSFLADVRE 88 (218)
Q Consensus 35 ~~l~~~l~----~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~--~~~~~~~~~~~~ 88 (218)
..|.+.|. ..- ... ++.|.|++|+|||||+.+++....+. ...++|+ +..+
T Consensus 12 ~~LD~~LGg~~~GGl-~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyI-d~E~ 68 (333)
T 3io5_A 12 PMMNIALSGEITGGM-QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFY-DSEF 68 (333)
T ss_dssp HHHHHHHHSSTTCCB-CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEE-ESSC
T ss_pred HHHHHHhCCCCCCCC-cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE-eccc
Confidence 34555555 322 334 78999999999999999998876554 3455666 4444
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.80 E-value=1.6e-05 Score=57.91 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.+++|++|+||||++..++.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999987877653
No 102
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.79 E-value=1.2e-05 Score=64.28 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=36.7
Q ss_pred cccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 22 ETLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 22 ~~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..-..++|.+.....+...+.. ...+.++|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~---~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVD---PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHC---GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhC---CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445699998866665444432 2234589999999999999999998654
No 103
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.78 E-value=0.00013 Score=54.57 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.++|+|.|+||+||+|+|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999865
No 104
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.77 E-value=8.3e-05 Score=59.55 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..|..++...- ....++.|+|++|+|||+|+..++...
T Consensus 109 ~~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 109 QEFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hhHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554322 567899999999999999999999864
No 105
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.76 E-value=1.2e-05 Score=58.71 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=24.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFE 78 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~ 78 (218)
|+|+|.||+|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 67899999999999999999987655544
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=2.1e-05 Score=63.14 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=37.6
Q ss_pred chhHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 31 DSRLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 31 ~~e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
..-+..|...|. ..- ...+++.|+|++|+|||||+..++.........+.|+.
T Consensus 43 ~TG~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 43 PTGSISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334555666665 222 45679999999999999999999986655545566663
No 107
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.76 E-value=0.00011 Score=58.68 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=36.0
Q ss_pred ccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 29 GIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 29 gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
|-..-+..|.+++... ..+..++|.|.+|+|||+|+..++.........+.|+
T Consensus 28 gi~TG~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 28 GIPTGFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp SBCCSCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3333445555555432 4457899999999999999999998665444445555
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=2.4e-05 Score=59.08 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.|.+++...- ....++.|.|++|+|||||+..++..
T Consensus 12 ~LD~~l~ggi-~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 12 ELDKLLQGGI-ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHTTTSE-ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCC-cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444453221 45679999999999999999999985
No 109
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.73 E-value=0.00027 Score=55.64 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=34.4
Q ss_pred hhHHHHHHhhhcCC-----CCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 32 SRLEELRSLMNKGP-----NDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 32 ~e~~~l~~~l~~~~-----~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...+.|.+.+.... ...+.++.|+|++|+||||++..++..+......+.++
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 34444555554321 13467899999999999999999998765443334444
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.72 E-value=2.2e-05 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++|+|++|+||||+++.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 111
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.72 E-value=3e-05 Score=62.61 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=57.3
Q ss_pred chhHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 31 ~~e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
..-+..|..+|. ..- ...+++.|+|++|+|||+|+..++.........++|+ ........ . ....+..
T Consensus 56 ~TG~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi-~~E~s~~~---~------~a~~~g~ 124 (366)
T 1xp8_A 56 STGSLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI-DAEHALDP---V------YARALGV 124 (366)
T ss_dssp CCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESSCCCCH---H------HHHHTTC
T ss_pred cCCCHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE-ECCCChhH---H------HHHHcCC
Confidence 334556666665 211 4567899999999999999999988765444566676 34332211 1 1122111
Q ss_pred ccC----CCcccccccHHHHHHhhC-CCeEEEEEeCCC
Q 047309 110 LEK----DSIWNVGDGINILGSRLQ-HKKVLLVIDDVV 142 (218)
Q Consensus 110 ~~~----~~~~~~~~~~~~l~~~l~-~~~~livlD~~~ 142 (218)
... ....+...+...+....+ ...-+||||.+.
T Consensus 125 d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 125 NTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred CHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 000 111233445555555554 345699999884
No 112
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=4.1e-05 Score=60.81 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 35 EELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 35 ~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..|..+|...- ....++.|+|++|+|||+|+..++....
T Consensus 94 ~~LD~~L~GGl-~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 94 QALDGLLAGGI-ETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCC-CCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 34444453221 4567999999999999999999998653
No 113
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.69 E-value=7.6e-05 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|.|+||+||+|+|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 114
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.69 E-value=0.00037 Score=57.70 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=33.2
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~ 83 (218)
+..|.+++... ..+..+.|.|++|+|||+|+..++..... ....++|+
T Consensus 187 ~~~LD~~lgGl--~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 187 FKELDQLIGTL--GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp CHHHHHHHCCC--CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CHhhhhhcCCc--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34455555222 45678999999999999999999986643 23445565
No 115
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.67 E-value=0.0002 Score=59.32 Aligned_cols=39 Identities=36% Similarity=0.462 Sum_probs=27.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccc-cceEEEEechhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEF-EGSSFLADVREK 89 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~-~~~~~~~~~~~~ 89 (218)
..+.|+|++|+|||+|+..++......+ ..+++. .+++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~-~iGer 191 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA-GVGER 191 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE-EESSC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe-eeccC
Confidence 4678999999999999999988654433 333343 55553
No 116
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.66 E-value=5.1e-05 Score=55.93 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=32.3
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...+..+..++... +..+.++++||+|+|||++|..+++.+.
T Consensus 42 ~~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 42 ITFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567777777653 3345789999999999999999998764
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.65 E-value=0.00018 Score=59.90 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=32.3
Q ss_pred cccccccccccchhHH----HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 20 KSETLKKLVGIDSRLE----ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 20 ~~~~~~~~~gR~~e~~----~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
+++.+..|-+-..+-+ .+...+... .+.++|.|++|+|||+++..++..+....
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~----~~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIKEK----KHHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHHSS----SCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHhcC----CCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3344455555443333 333344432 24899999999999999999998765443
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.63 E-value=5.4e-05 Score=56.08 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=30.6
Q ss_pred hHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 33 RLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+++|.+.+... .....+++|.|++|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555555432 25567999999999999999999998664
No 119
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.62 E-value=0.00016 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=19.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.+++|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 57889999999999999776543
No 120
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.61 E-value=0.00048 Score=57.22 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~ 83 (218)
..+..++|.|++|+|||||+..++..... ....+.|+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 45679999999999999999999986643 23345555
No 121
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.60 E-value=0.00081 Score=57.50 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=26.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.++|+|++|+||||++..++..+......+.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 6899999999999999999998665444334433
No 122
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=5e-05 Score=54.14 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+.++|.|++|+||||+++.+++.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 123
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.58 E-value=8.2e-05 Score=54.71 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.+++|.|++|+|||||++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998765
No 124
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.56 E-value=0.00056 Score=55.24 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.2
Q ss_pred cccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.+..+.++.+.+.... .....++|+|++|+||+.+|+.+....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhc
Confidence 3568898888888776664422 223457799999999999999887654
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.56 E-value=5e-05 Score=61.10 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=37.3
Q ss_pred chhHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 31 DSRLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 31 ~~e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
..-+..|..++. ..- ...+++.|+|++|+|||+||..++.........++|+.
T Consensus 45 ~TG~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 334555666664 211 45679999999999999999999987655545566663
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.55 E-value=0.00041 Score=56.11 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
.....++|+|++|+||||+++.++..+.......+.+............. .+..+... ..+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~-g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREV-GEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEB-TTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeec-CCCHHHHHHHHH
Confidence 44578999999999999999999986543312233221111000000000 00000000 001223455666
Q ss_pred HhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 127 SRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
..+...+-+|++|+..+...+...+... ..|..++.|+...+
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 7776677899999997655544433221 33556777766543
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=6.7e-05 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++|.|++|+||||+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 128
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.53 E-value=0.00011 Score=58.11 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+..|..++...- ....++.|+|++|+|||+|+..++..
T Consensus 84 ~~~LD~~l~GGl-~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGL-ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSE-ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555554322 45689999999999999999999875
No 129
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.52 E-value=0.00064 Score=56.31 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+..|.+++... ..+..++|.|.+|+|||+|+..++.........++|+
T Consensus 184 ~~~LD~~lgGl--~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 184 FTELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CHHHHHHHSSB--CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHhhcCCC--CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 34444445321 4567899999999999999999998664443445555
No 130
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.51 E-value=0.001 Score=54.09 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=36.6
Q ss_pred ccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 25 KKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.+..++++.+.+.... .....|.|+|++|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhc-CCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 458888888888877776533 223456899999999999999887643
No 131
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.51 E-value=0.0001 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=23.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+.|+|.|++|+||||+++.+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999977543
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=6.4e-05 Score=54.38 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++++|.|++|+|||||++.+.....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999988653
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=6.4e-05 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+.+++|.|++|+|||||++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998654
No 134
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.49 E-value=7.8e-05 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.++|.|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.48 E-value=7.1e-05 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..+.+++|.|++|+|||||++.++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999875
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.46 E-value=7.4e-05 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=23.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
++++|.|++|+|||||++.++..+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5788999999999999999998664333
No 137
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.45 E-value=0.00063 Score=57.25 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
.....+.|.|++|+|||+|+..++...... ...+.|+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 456789999999999999999999876554 4456666
No 138
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=8.6e-05 Score=54.59 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++++|.|++|+|||||++.++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999999998654
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=9.8e-05 Score=53.67 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+..++|.|++|+||||+++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999865
No 140
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.45 E-value=0.00014 Score=52.74 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.....++|.|++|+||||+++.++..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44678999999999999999999987654
No 141
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=0.00019 Score=55.98 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+..++|.|++|+||||+++.++.++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999998865
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.44 E-value=9.2e-05 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..++|.|++|+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 143
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.43 E-value=0.00015 Score=62.50 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=40.0
Q ss_pred ccccccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 23 TLKKLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 23 ~~~~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
....++|.+..++.+...+... ..++|+|++|+||||||+.++..+..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3446899999999998888653 58899999999999999999986543
No 144
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=9.8e-05 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=23.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..++|.|++|+||||+++.+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=0.0001 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++|.|++|+|||||++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=7.9e-05 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|+|++|+|||||++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
No 147
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=0.00011 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|++|+|||||++.++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998865
No 148
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.39 E-value=0.0027 Score=50.49 Aligned_cols=128 Identities=10% Similarity=-0.051 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc-ccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS-HEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
-.++.+++|+.|.||++.+..+.+.+. ..+.....+ .... . .++..+...+...-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~-~~~~~l~~~~~~~p------------------- 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SIDP---N-TDWNAIFSLCQAMS------------------- 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECCT---T-CCHHHHHHHHHHHH-------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-EecC---C-CCHHHHHHHhcCcC-------------------
Confidence 346899999999999999999988653 222211111 1111 1 11444443332211
Q ss_pred HhhCCCeEEEEEeCCCC-h--hHhhHHhcCCCCCCCCceEEEEeCC-------hhhHhh-cCCCceeeCCCCChhHHHHH
Q 047309 127 SRLQHKKVLLVIDDVVD-I--KQLEYLAGKREWFGSGSRIIVTSRD-------EHLLKT-YGMDEIYKPNELNYHDALQL 195 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~-~--~~~~~l~~~~~~~~~~~~ilittr~-------~~~~~~-~~~~~~~~l~~L~~~e~~~l 195 (218)
+-+.+-++|+|+++. . ...+.+...+....+++.+|+++.. ..+... .+.+..++..+++.++....
T Consensus 73 --lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 73 --LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp --HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred --CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 124456889999876 3 3455555444433456666665543 123333 34567899999999999988
Q ss_pred HHHhhc
Q 047309 196 FNMKAF 201 (218)
Q Consensus 196 ~~~~~~ 201 (218)
+.+.+.
T Consensus 151 l~~~~~ 156 (343)
T 1jr3_D 151 VAARAK 156 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=0.00011 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
++++|.|++|+||||+++.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999998 53
No 150
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.39 E-value=0.00011 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.|+|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999865
No 151
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.37 E-value=0.0034 Score=47.37 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=29.0
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
--|+-..+.+..++.. +-++|+|+.|+|||.++..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~------~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD------KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT------SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC------CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3356666666666543 237899999999999998888754
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.37 E-value=9.1e-05 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+++++|.|++|+|||||++.++..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3457899999999999999999998763
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00016 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|++|+||||+++.++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998764
No 154
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.35 E-value=0.00028 Score=56.61 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 36 ELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 36 ~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.|...|...- +...++.|+|++|+|||||++.++....
T Consensus 119 ~LD~lL~ggi-~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 119 SLDKLLGGGI-ETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHHTSSE-ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444443322 5678999999999999999999998653
No 155
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.35 E-value=0.00024 Score=57.46 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~ 88 (218)
.++..+.|.|++|+|||+|++.+++.... +-+..+.+..+++
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 44568889999999999999999885533 2233233335554
No 156
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.35 E-value=0.00016 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..++|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.35 E-value=0.00026 Score=52.18 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+..|+|.|++|+||||+++.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999877543
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.35 E-value=0.0001 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++++|.|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
No 159
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.34 E-value=0.00019 Score=53.06 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+..|+|.|++|+||||+++.+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999876543
No 160
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.33 E-value=0.0006 Score=54.22 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR 128 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (218)
...++|.|++|+|||||++.++..+.. ....+.+....+.... . ... .+ .... .........+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~-~~~-------~i---~~~~-ggg~~~r~~la~a 236 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-H-HKN-------YT---QLFF-GGNITSADCLKSC 236 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-S-CSS-------EE---EEEC-BTTBCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-c-chh-------EE---EEEe-CCChhHHHHHHHH
Confidence 358999999999999999998876543 2444444332211000 0 000 00 0000 0223445566677
Q ss_pred hCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChhhHhhcCCCcee---e--CCCCChhHHHHHHHHh
Q 047309 129 LQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEHLLKTYGMDEIY---K--PNELNYHDALQLFNMK 199 (218)
Q Consensus 129 l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~~~~~~~~~~~~---~--l~~L~~~e~~~l~~~~ 199 (218)
+..++-+|++|+......++.+. .+. ..+..+++|++.......+...-.+ . =..++.+....++...
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~ 309 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDL 309 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTT
T ss_pred hhhCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHHHh
Confidence 77788899999998754444332 221 1223467777765433222110000 0 1256666666666543
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00015 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++|.|++|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998865
No 162
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.33 E-value=0.00033 Score=54.67 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
....+++|.|++|+|||||++.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 55678999999999999999999886643
No 163
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.33 E-value=0.00021 Score=54.34 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+..|+|.|++|+||||+++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00017 Score=52.44 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00016 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 166
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.30 E-value=0.00019 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++++|.|++|+||||||+.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4788999999999999999998653
No 167
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.29 E-value=0.00018 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....++|+|++|+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 168
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.29 E-value=0.00011 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988653
No 169
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.29 E-value=0.00022 Score=58.88 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.2
Q ss_pred ccccccchhHHHHHHhhhcC-----------CCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 25 KKLVGIDSRLEELRSLMNKG-----------PNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 25 ~~~~gR~~e~~~l~~~l~~~-----------~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
...+|.+...+.+...+... .....+.++++|++|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45788888777776655221 00134568899999999999999999876443
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00012 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+.++|.|++|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999987553
No 171
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.0002 Score=52.56 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+..|+|.|++|+||||+++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999865
No 172
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.28 E-value=0.00015 Score=69.49 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++.+.+.|+|++|+|||+||.+++.........+.|+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4567999999999999999999998877666677777
No 173
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.28 E-value=0.00017 Score=53.96 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+.+.+++|.|++|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567999999999999999999988654
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.27 E-value=0.00029 Score=57.50 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHH
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+..|-++|...- ....++.|.|++|+|||||++.++-
T Consensus 164 ~~~LD~lLgGGI-~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCc-CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 444555553322 4567999999999999999998764
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.27 E-value=0.00085 Score=55.23 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+++++++|++|+||||++..++..+......+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999998765544444444
No 176
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.27 E-value=0.0016 Score=64.43 Aligned_cols=147 Identities=16% Similarity=0.032 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc--------cCCCcccccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL--------EKDSIWNVGD 120 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~ 120 (218)
.+.++++||+|+|||++|+.+.... ........+...... ...+...+-..+... .+...
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---~~~~~~~infsa~ts----~~~~~~~i~~~~~~~~~~~g~~~~P~~~----- 1334 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---SLYDVVGINFSKDTT----TEHILSALHRHTNYVTTSKGLTLLPKSD----- 1334 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---SSCEEEEEECCTTCC----HHHHHHHHHHHBCCEEETTTEEEEEBSS-----
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---CCCceEEEEeecCCC----HHHHHHHHHHHhhhccccCCccccCCCC-----
Q ss_pred cHHHHHHhhCCCeEEEEEeCCCCh--------hHhhHHhcCCCCCC------------CCceEEEEeCChh-------hH
Q 047309 121 GINILGSRLQHKKVLLVIDDVVDI--------KQLEYLAGKREWFG------------SGSRIIVTSRDEH-------LL 173 (218)
Q Consensus 121 ~~~~l~~~l~~~~~livlD~~~~~--------~~~~~l~~~~~~~~------------~~~~ilittr~~~-------~~ 173 (218)
+++.++++||++.+ ...+.+.+.+.... .+..+|.++-... ..
T Consensus 1335 ----------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1335 ----------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE 1404 (2695)
T ss_dssp ----------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCH
T ss_pred ----------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCCh
Q ss_pred hhcCCCceeeCCCCChhHHHHHHHHhhcCCCCCCchhHhhhccc
Q 047309 174 KTYGMDEIYKPNELNYHDALQLFNMKAFKIQKPLEECVQLSEGV 217 (218)
Q Consensus 174 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~i~~~i 217 (218)
...+....+.++..+.++...+|.....+.-...+.+..+++.+
T Consensus 1405 rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~l 1448 (2695)
T 4akg_A 1405 RFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPF 1448 (2695)
T ss_dssp HHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHH
T ss_pred hhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHH
No 177
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.26 E-value=0.00023 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....|+|.|++|+||||+++.+++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 178
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.26 E-value=0.00018 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998653
No 179
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.26 E-value=0.00019 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999998764
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.25 E-value=0.00093 Score=52.28 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~ 83 (218)
..+.++.+.|++|+||||++..++..+.. ....+.++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34679999999999999999999987653 33344444
No 181
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00019 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998653
No 182
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.25 E-value=0.00016 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.|+|+|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999865
No 183
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.24 E-value=0.00022 Score=53.10 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....++|.|++|+||||+++.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998653
No 184
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.23 E-value=0.00021 Score=52.78 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++.+++|.|++|+|||||++.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988654
No 185
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00019 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..|+|.|++|+||||+++.+++.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998653
No 186
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.22 E-value=0.00021 Score=52.69 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+..|+|.|++|+||||+++.+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999987643
No 187
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.22 E-value=0.0059 Score=50.34 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred hHHHHHHhhhcCC------CCCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 33 RLEELRSLMNKGP------NDDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~------~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
..+++.+++.... ....+++.++|.+|+||||++..++..+... ...+..+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3445555554321 1346789999999999999999999876554 3444444
No 188
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00031 Score=52.95 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
....++.|.|++|+|||||+..++.........++|+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4457899999999999999988887654444456666
No 189
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.22 E-value=0.0004 Score=54.97 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=33.1
Q ss_pred ccccchhHHHHHHhhhc-CCCCCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 27 LVGIDSRLEELRSLMNK-GPNDDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~-~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++|....+..+...+.. .......+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44544455555444433 3335566899999999999999999887654
No 190
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.22 E-value=0.00022 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....+++|.|++|+|||||++.++...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445799999999999999999998754
No 191
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=0.0012 Score=52.30 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
....++.|+|++|+||||++..++..+......+.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567899999999999999999998665443333333
No 192
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.21 E-value=0.00024 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 193
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.20 E-value=0.0002 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.++|.|++|+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 194
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.00028 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|.|++|+||||+++.+++.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998653
No 195
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.0004 Score=53.04 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+..++|.|++|+||||+++.++..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4467899999999999999999998653
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.18 E-value=0.00019 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.579 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|++|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999998855
No 197
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.18 E-value=0.00027 Score=51.20 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.18 E-value=0.00025 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 199
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.18 E-value=0.0023 Score=53.01 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLV 105 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (218)
.++.-+.|.|.+|+|||+|+.++++...+ +...++|. .+++.... +.++.+.+..
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER~rE---v~e~~~~~~~ 206 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTRE---GNDLYHEMIE 206 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCCHHH---HHHHHHHHHH
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCcchH---HHHHHHHhhh
Confidence 34567889999999999999999987533 33444444 55553221 4555555543
No 200
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00039 Score=49.78 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+++.|.|++|+|||||+..++..+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999877554
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.00031 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998653
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.15 E-value=0.00021 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~ 70 (218)
++.+++|.|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999643
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.001 Score=54.83 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.+++++|++|+||||++..++..+......+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998766554444444
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.15 E-value=0.0003 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998764
No 205
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.14 E-value=0.00031 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.14 E-value=0.00029 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999866
No 207
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.14 E-value=0.0003 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+..++|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 208
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.14 E-value=0.0003 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 209
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.14 E-value=0.00025 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 210
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.13 E-value=0.00025 Score=52.87 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....++|.|++|+||||+++.+++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999998764
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.0004 Score=49.95 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+..++|.|++|+||||+++.++..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999998653
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.12 E-value=0.00028 Score=52.69 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++.|.|++|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998743
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.12 E-value=0.00039 Score=49.22 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345789999999999999999999865
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.12 E-value=0.00032 Score=51.71 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|+|++|+||||+++.++..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 445789999999999999999988753
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.11 E-value=0.00037 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4567999999999999999999885
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.0048 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+.+++.|++|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5889999999999987665543
No 217
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00036 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+...|+|.|++|+||||+++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 218
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00031 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.10 E-value=0.0011 Score=49.40 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=30.1
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
++....+.+.+.. .....++|.|.+|+|||||+..++.....
T Consensus 23 ~~~a~~~r~~~~~---~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNK---HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3344555555543 34577889999999999999999986533
No 220
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.10 E-value=0.00036 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.|+|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987643
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.10 E-value=0.00043 Score=51.25 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.+++|.|++|+||||+++.++..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998664
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.10 E-value=0.0033 Score=49.18 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..++.+.|++|+||||++..++..+......+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67889999999999999999998665443334444
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.08 E-value=0.00041 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....+|+|.|++|+||||+++.++..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988653
No 224
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.08 E-value=0.00038 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...+++|.|++|+||||+++.+++.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999754
No 225
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.08 E-value=0.00042 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|+.|+|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999998854
No 226
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.07 E-value=0.00058 Score=52.47 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
.....++|+|++|+|||||++.++..+...+...+++......+-... ... +..+..... +.......+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~-~~~--------~v~q~~~gl-~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKH-KKS--------IVNQREVGE-DTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-SSS--------EEEEEEBTT-TBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCC-cce--------eeeHHHhCC-CHHHHHHHHH
Confidence 456799999999999999999998865433233333322111000000 000 000000000 0112234444
Q ss_pred HhhCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 127 SRLQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
..+...+-+|++|+..+......+.... ..+..+++|+...+
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 5554456688899987544433333221 24556777777654
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.07 E-value=0.00061 Score=53.54 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+.++.|.|++|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999986543
No 228
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.0013 Score=48.85 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
....+.+++|+.|.||||.+...+.++..+...+.++...... ... -..+...+-... .........+ +.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~--R~g-e~~i~s~~g~~~---~a~~~~~~~~----~~ 95 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN--RYS-EEDVVSHNGLKV---KAVPVSASKD----IF 95 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------C---CEEECSSGGG----GG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC--cch-HHHHHhhcCCee---EEeecCCHHH----HH
Confidence 4467889999999999999988888775554444444211110 111 112222221110 0001111111 11
Q ss_pred HhhCCCeEEEEEeCCCC--hhHhhHHhcCCCCCCCCceEEEEeCChh
Q 047309 127 SRLQHKKVLLVIDDVVD--IKQLEYLAGKREWFGSGSRIIVTSRDEH 171 (218)
Q Consensus 127 ~~l~~~~~livlD~~~~--~~~~~~l~~~~~~~~~~~~ilittr~~~ 171 (218)
....+.--+|+||++.- .+.++.+. .+. ..+..|++|.++.+
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~-~l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQ-VLA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHH-HHH--HTTCEEEEEECSBC
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHH-HHh--hCCCEEEEEecccc
Confidence 22223334999999854 33443332 222 23678999999543
No 229
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.07 E-value=0.00023 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
+++|.|++|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999987643
No 230
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.04 E-value=0.00035 Score=51.33 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
.++|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999999987
No 231
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.04 E-value=0.00072 Score=53.20 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.+++|.|++|+|||||++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999999988654
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.03 E-value=0.0004 Score=55.19 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..++++|.|++|+|||+|+..+++++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999998653
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00042 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+++|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 234
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.02 E-value=0.00087 Score=50.55 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh-cccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI-SHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~-~~~~~~~~~~ 83 (218)
.....+.|.|++|+|||+|+.+++.+. .+....+.|+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 456789999999999999999887643 2333445555
No 235
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00085 Score=49.75 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
++..+.+...+.. ...+.++|.|.+|+|||||+..++......
T Consensus 15 ~~~~~~~~~~~~~---~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE---SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH---HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc---cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444455555433 345789999999999999999998865443
No 236
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.02 E-value=0.00022 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=17.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHH-Hhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVY-DLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~-~~~ 73 (218)
.+.+++|.|++|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45689999999999999999998 643
No 237
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.01 E-value=0.00049 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++++|.||+|+|||+|+..+++.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999999854
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=0.00075 Score=53.97 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+...++|.|++|+||||+++.++..+.-.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344668899999999999999999865433
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.01 E-value=0.00051 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.+++|.|++|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 5667999999999999999999988654
No 240
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.00 E-value=0.0027 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+.++|+|++|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999988877553
No 241
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.99 E-value=0.0033 Score=52.31 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechhhhccCchHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVREKFKNKGSVISFQRQLLV 105 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 105 (218)
.++.-+.|.|.+|+|||+|+.+++++..+ +...++|. .+++... ...++.+.+..
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~r---Ev~e~~~~~~~ 218 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERTR---EGNDLYMEMKE 218 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCSH---HHHHHHHHHHH
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCcH---HHHHHHHhhhc
Confidence 34567889999999999999999987533 33455555 5655322 14555555443
No 242
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.98 E-value=0.00058 Score=51.37 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....++|.|++|+||||+++.+++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998763
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.98 E-value=0.00092 Score=53.10 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.++.++.|.|++|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999999865433
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.96 E-value=0.00083 Score=52.72 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.++.|.|+.|+||||+++.++..+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998654
No 245
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.96 E-value=0.0005 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.++|.|++|+|||+||..++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999864
No 246
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.0012 Score=49.63 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.....++|.|++|+||||+++.+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999998764
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.93 E-value=0.00047 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|+.|+|||||++.++.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4457899999999999999998886
No 248
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.93 E-value=0.0006 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999865
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.92 E-value=0.00061 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+.++|.|++|+|||||+..+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 588999999999999999999865
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00053 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998653
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.92 E-value=0.00052 Score=51.05 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 252
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.92 E-value=0.0022 Score=51.51 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.....|+|+|.+|+|||||+..++..+...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456789999999999999999998765433
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.92 E-value=0.00076 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++++|.||+|+|||+|+..+++.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35688999999999999999999864
No 254
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.92 E-value=0.0011 Score=52.35 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEe
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLAD 85 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~ 85 (218)
+..+++.|+|.+||||||.+..++..+.+....+..+.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~ 84 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 84 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 456899999999999999999888877665555555543
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.91 E-value=0.0009 Score=48.12 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+++.|.|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 368999999999999999999986643
No 256
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.91 E-value=0.00082 Score=52.41 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc-ccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE-FEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~-~~~~~~~ 83 (218)
..+.+++|.|++|+|||||++.++...... ...+.|+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 455799999999999999999999865433 2234444
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.91 E-value=0.00066 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|++|+||||+++.+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00076 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+++|.|++|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 259
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.90 E-value=0.0009 Score=56.24 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=36.1
Q ss_pred cccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 26 KLVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 26 ~~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..+.|.+..+.+.+...... .+...+++.|.+|+||||+++.+++++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~-~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRP-KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGG-GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhccccc-ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35556656666666553221 45578999999999999999999998764
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.89 E-value=0.0017 Score=54.27 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..+.+++|.|++|+|||||++.++..+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 45679999999999999999999986543
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.00064 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhh
Q 047309 51 MIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 262
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.87 E-value=0.003 Score=54.78 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=26.6
Q ss_pred chhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 31 ~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+...+++...|... .+.+|+||||+|||+.+..+...+
T Consensus 192 ~~Q~~AV~~al~~~-----~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 192 TSQKEAVLFALSQK-----ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHHCS-----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CceEEECCCCCCHHHHHHHHHHHH
Confidence 34455667666542 478899999999998665555544
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.00059 Score=51.65 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|+.|+|||||++.++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445789999999999999999988743
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.86 E-value=0.00078 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+++|.|++|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 265
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.85 E-value=0.0038 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCccHHHHH-HHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLA-RVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La-~~v~~~~~ 74 (218)
.++.-+.|.|.+|+|||+|| ..+++...
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 34556779999999999994 56776544
No 266
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00087 Score=48.43 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.....|+|.|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33457889999999999999998874
No 267
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.85 E-value=0.0011 Score=49.64 Aligned_cols=33 Identities=12% Similarity=-0.124 Sum_probs=25.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+++.|++|+||||++..++..+......+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 488999999999999999998765554333333
No 268
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.85 E-value=0.00083 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.-..++|+|.+|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999998753
No 269
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.84 E-value=0.00081 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+++|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999988653
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.83 E-value=0.00047 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+.+++|.|+.|+|||||++.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998886
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.82 E-value=0.00064 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998886
No 272
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.82 E-value=0.00048 Score=49.79 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
++|+|.+|+|||++|.+++.. ...+.|+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yi 29 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYI 29 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEE
Confidence 679999999999999999865 2335565
No 273
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.82 E-value=0.0016 Score=48.37 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+.+|++.|+.|+||||+++.+++.+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999987654
No 274
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.81 E-value=0.0008 Score=52.81 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+....++|+|++|+|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999998754
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.80 E-value=0.00077 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999886
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.00069 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhc
Q 047309 51 MIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++|.|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 678999999999999999998653
No 277
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.80 E-value=0.00089 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.....|+|+|++|+||||+++.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999883
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.80 E-value=0.0013 Score=52.83 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
..+.++.|.|+.|+||||+++.++..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3567999999999999999999998654
No 279
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.79 E-value=0.0011 Score=53.51 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc-cccceEEEEechh
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH-EFEGSSFLADVRE 88 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~-~~~~~~~~~~~~~ 88 (218)
..+.+... .++.-+.|.|++|+|||+|+.++++.... +-+..+.+..+++
T Consensus 165 aID~l~Pi--grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 165 LIDLFAPI--GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHSCC--BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred hhhhcccc--cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 34555544 34567789999999999999999986532 2233333335544
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.0012 Score=50.95 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....++.|.|++|+|||||+..++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987543
No 281
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.78 E-value=0.0009 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..++|.|++|+||||+++.++++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 282
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.78 E-value=0.00083 Score=50.92 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+++|.|+.|+|||||++.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998873
No 283
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.78 E-value=0.0016 Score=47.91 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=27.2
Q ss_pred cccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 28 VGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 28 ~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+-..+.+..++.. +-+++.+++|+|||.++...+..
T Consensus 33 ~l~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEG------KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCHHHHHHHHHHHTT------CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcC------CCEEEEcCCCCCHHHHHHHHHHH
Confidence 3355555556655543 35779999999999988776653
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.78 E-value=0.0009 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..+.+++|.|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999998874
No 285
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.76 E-value=0.0053 Score=51.15 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.++.-+.|.|.+|+|||+|+ ..+++.. ..+..+.+..+++
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGe 200 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQ 200 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESC
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCC
Confidence 34566779999999999995 5677654 2343333335555
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.75 E-value=0.00078 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....+++|.|+.|+|||||++.++.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 45678999999999999999988863
No 287
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.73 E-value=0.0016 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999754
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.73 E-value=0.00083 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998874
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.73 E-value=0.00052 Score=53.55 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+..+|+|.|++|+||||+++.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988653
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.73 E-value=0.00091 Score=63.45 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=56.1
Q ss_pred HHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhc--
Q 047309 34 LEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKL-- 110 (218)
Q Consensus 34 ~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 110 (218)
+..|..++. ..- ...+++.|+|++|+|||+|+.+++.........++|+ ........ . . +..+...
T Consensus 368 i~~LD~lLg~GGl-~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyi-s~E~s~~~---~---~---a~~lGvd~~ 436 (1706)
T 3cmw_A 368 SLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI-DAEHALDP---I---Y---ARKLGVDID 436 (1706)
T ss_dssp CHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-CTTSCCCH---H---H---HHHTTCCGG
T ss_pred cHHHHHHhccCCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEE-EccCchHH---H---H---HHHcCCCHH
Confidence 444555554 111 4568999999999999999999998766555667777 44443221 1 1 2221110
Q ss_pred --cCCCcccccccHHHHHHhh-CCCeEEEEEeCCCC
Q 047309 111 --EKDSIWNVGDGINILGSRL-QHKKVLLVIDDVVD 143 (218)
Q Consensus 111 --~~~~~~~~~~~~~~l~~~l-~~~~~livlD~~~~ 143 (218)
......+...+...++... ..+.-+||||.+..
T Consensus 437 ~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 437 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred HeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 0011122333444444433 34566999999853
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.72 E-value=0.00085 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..+.+++|.|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44578999999999999999998874
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.72 E-value=0.00085 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999886
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00093 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+..+++|.|++|+|||||++.++.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 4456899999999999999999987
No 294
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.72 E-value=0.0065 Score=50.62 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccC------CCcccc-
Q 047309 47 DDVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEK------DSIWNV- 118 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~- 118 (218)
.++.-+.|.|.+|+|||+|+ ..+++. +..+..+.+..+++.... +.++.+.+... ..... ....+.
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR~~e---v~e~~~~l~~~-g~m~~tvvV~atad~p~~ 233 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQKAST---ISNVVRKLEEH-GALANTIVVVATASESAA 233 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCCHHH---HHHHHHHHHHH-SCSTTEEEEEECTTSCHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCChHH---HHHHHHHHhhc-CcccceEEEEECCCCChH
Confidence 34456779999999999996 566664 233443333355553211 44555544332 00000 011111
Q ss_pred ---------cccHHHHHHhhCCCeEEEEEeCCC
Q 047309 119 ---------GDGINILGSRLQHKKVLLVIDDVV 142 (218)
Q Consensus 119 ---------~~~~~~l~~~l~~~~~livlD~~~ 142 (218)
-.+.+.|+. +++..||++||+.
T Consensus 234 ~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 234 LQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 122333433 5889999999984
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.72 E-value=0.00086 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....+++|.|+.|+|||||++.++.-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999988863
No 296
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.72 E-value=0.0007 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999998886
No 297
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.71 E-value=0.003 Score=48.04 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
....++++.|.+|+||||++..++..+. ....+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 4567899999999999999999998665 43333333
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.71 E-value=0.00072 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999998886
No 299
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.71 E-value=0.00072 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|+.|+|||||++.++.-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999988744
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.70 E-value=0.00097 Score=54.76 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....+|+|+|++|+||||+++.++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999988754
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.69 E-value=0.00065 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
..+.|+|++|+|||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999999866543
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.69 E-value=0.00076 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988863
No 303
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.69 E-value=0.0038 Score=46.68 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
..+..|++.|..|+||||+++.+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999999997755
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.67 E-value=0.00074 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999998886
No 305
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.67 E-value=0.0067 Score=49.80 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.++.+.|++|+||||++..++..+......+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457888999999999999999998765543333333
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.67 E-value=0.00097 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4456899999999999999998886
No 307
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.67 E-value=0.00063 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468899999999999999998873
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.67 E-value=0.0008 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999988864
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.66 E-value=0.0081 Score=50.44 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..++|.|+|.+|+||||++..++..+......+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 456899999999999999999998665443333333
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.66 E-value=0.0013 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++++|.|++|+|||+|+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998653
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.65 E-value=0.00094 Score=51.42 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..+.+++|.|+.|+|||||++.++.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3457899999999999999998886
No 312
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.00053 Score=58.92 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=34.6
Q ss_pred cccccccchhHHHHHHhhhcCCC--------CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 24 LKKLVGIDSRLEELRSLMNKGPN--------DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 24 ~~~~~gR~~e~~~l~~~l~~~~~--------~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.++|.+...+.+.-.+..... .....++++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34588988876666555543210 001168899999999999999988754
No 313
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.0012 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 4457899999999999999999986
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.64 E-value=0.0011 Score=63.87 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=57.6
Q ss_pred chhHHHHHHhhh-cCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhh
Q 047309 31 DSRLEELRSLMN-KGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILK 109 (218)
Q Consensus 31 ~~e~~~l~~~l~-~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 109 (218)
..-+..|.+++. ..- ...+++.|+|++|+|||+|+..++.........++|+ ........ . . ...+..
T Consensus 365 ~TG~~~LD~lLG~GGl-~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyi-s~E~s~~~---~---~---a~~lGv 433 (2050)
T 3cmu_A 365 STGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI-DAEHALDP---I---Y---ARKLGV 433 (2050)
T ss_dssp CCSCHHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE-CTTSCCCH---H---H---HHHTTC
T ss_pred eCCCHHHHHHhccCCc-cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE-EcCCCHHH---H---H---HHHcCC
Confidence 334455555664 111 4568999999999999999999998776555566666 44443221 1 1 222211
Q ss_pred ccC----CCcccccccHHHHHHhh-CCCeEEEEEeCCC
Q 047309 110 LEK----DSIWNVGDGINILGSRL-QHKKVLLVIDDVV 142 (218)
Q Consensus 110 ~~~----~~~~~~~~~~~~l~~~l-~~~~~livlD~~~ 142 (218)
... ....+..++...++... ..+.-+||+|.+.
T Consensus 434 d~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 434 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp CTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 000 01123334444444433 3456699999884
No 315
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.64 E-value=0.0016 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
.+..+++|.|++|+|||||++.++..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34578999999999999999999987653
No 316
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.63 E-value=0.014 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
...++.+|.|.+|+|||+++...+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999999887764
No 317
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0013 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 4457899999999999999999987
No 318
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.63 E-value=0.0013 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 3456899999999999999999987
No 319
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0014 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+..++|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 320
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.62 E-value=0.0016 Score=49.02 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.....++|.|++|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998755
No 321
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.61 E-value=0.0011 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999888744
No 322
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.61 E-value=0.0013 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4457999999999999999999986
No 323
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.60 E-value=0.0025 Score=47.03 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEF 77 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~ 77 (218)
.+|++-|..|+||||+++.+++.+.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~ 30 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 5889999999999999999999886543
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.60 E-value=0.0016 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.++|.|++|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478899999999999999999874
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.60 E-value=0.002 Score=50.48 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 34 LEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 34 ~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
+++|.+.+. ..++++.|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l~------G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE------GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT------TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc------CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 445555443 3688999999999999999998 54
No 326
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.60 E-value=0.0011 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 3456899999999999999999987
No 327
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.59 E-value=0.0011 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999999986
No 328
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.58 E-value=0.0048 Score=51.48 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechh
Q 047309 48 DVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
++.-+.|.|.+|+|||+|+ ..+++.. ..+.++.+..+++
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGe 213 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQ 213 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESC
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCC
Confidence 4456789999999999995 5677654 2343333335555
No 329
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.58 E-value=0.0016 Score=53.69 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+++.|+|++|+||||++..++..+......+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998765443334444
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.58 E-value=0.00098 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988743
No 331
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.58 E-value=0.0027 Score=49.70 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
...+++.|+|.+|+||||++..++..+.+....+..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678888899999999999999987765544455553
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.58 E-value=0.00097 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....+++|.|+.|+|||||++.++.-
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999988863
No 333
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.57 E-value=0.0014 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..++|.|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.57 E-value=0.0013 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
-.++|.|++|+|||||++.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 335
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.57 E-value=0.0018 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..++|.|++|+|||||+..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999986
No 336
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.56 E-value=0.003 Score=51.86 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.....++|.|+.|+||||+++.++..+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 345789999999999999999999866443
No 337
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.55 E-value=0.0018 Score=61.49 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILG 126 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 126 (218)
++.+++-|+|+.|+||||||..++.+.++....+.|+ +.....+ .. .++.+--++.......+...+.....+.
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i-~~e~~~~----~~-~~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI-DAEHALD----PI-YARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-CTTSCCC----HH-HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE-ecCCCCC----HH-HHHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 5578999999999999999999998888787888888 4433221 11 1222111111111111122233334444
Q ss_pred Hhh-CCCeEEEEEeCCC
Q 047309 127 SRL-QHKKVLLVIDDVV 142 (218)
Q Consensus 127 ~~l-~~~~~livlD~~~ 142 (218)
.++ .+..-+||+|.+.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 444 3667799999873
No 338
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.54 E-value=0.0057 Score=50.43 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc---ccceEEEEechhhhccCchHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE---FEGSSFLADVREKFKNKGSVISFQRQLL 104 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 104 (218)
..-+.|.|.+|+|||+|+.++++....+ -+.++.+..+++.... +.++.+.+.
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~E---v~e~~~~~~ 206 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEE---AEFFMEDFR 206 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHH---HHHHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHH---HHHHHHHHh
Confidence 4456788999999999999999865432 2233334355553221 455555443
No 339
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.54 E-value=0.0012 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
-++|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999998886
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.53 E-value=0.0011 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.095 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.++.+++|.|+.|+|||||++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999988764
No 341
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.53 E-value=0.0037 Score=53.13 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=33.0
Q ss_pred ccccchhHHHHHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 27 LVGIDSRLEELRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 27 ~~gR~~e~~~l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
++-|....+.+.+...... .....++++|.+|+||||+++.+.+.+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~-~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKH-KQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGG-GCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhcccc-ccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4445545555555552211 34578999999999999999999987643
No 342
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.53 E-value=0.0013 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
...+++|.|++|+|||||++.++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 456899999999999999999986
No 343
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.52 E-value=0.0011 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4457899999999999999999986
No 344
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.49 E-value=0.003 Score=49.31 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...++.++|++|+||||++..++..+......+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457888999999999999999998665443333333
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.48 E-value=0.0016 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.+|+|+.|+|||||+..+..-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999988643
No 346
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.48 E-value=0.007 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
++.-+.|.|.+|+|||+|+.++++...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566789999999999999998643
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.48 E-value=0.0022 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+-++|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998873
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.48 E-value=0.0018 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.++.+++|.|++|+|||||++.++.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4567999999999999999998886
No 349
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.47 E-value=0.0014 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.+++|.|+.|+|||||++.++.-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999988743
No 350
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.46 E-value=0.0017 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....+++|.|++|+|||||++.++.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4567999999999999999999986
No 351
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.45 E-value=0.0071 Score=60.65 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhcc----CCCcccccccHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLE----KDSIWNVGDGIN 123 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~ 123 (218)
..+.|+++|++|+|||.++..+.....+ ......++....+ ...++..+-....... +.-.....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~---~~~~~infS~~Tt----a~~l~~~~e~~~e~~~~~~~G~~~~p~~---- 1371 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD---FEVVSLNFSSATT----PELLLKTFDHHCEYKRTPSGETVLRPTQ---- 1371 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT---EEEEEECCCTTCC----HHHHHHHHHHHEEEEECTTSCEEEEESS----
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC---CceEEEEeeCCCC----HHHHHHHHhhcceEEeccCCCcccCCCc----
Q ss_pred HHHHhhCCCeEEEEEeCCCChh--------HhhHHhcCCCCCC------------CCceEEEEeCChh-------hHhhc
Q 047309 124 ILGSRLQHKKVLLVIDDVVDIK--------QLEYLAGKREWFG------------SGSRIIVTSRDEH-------LLKTY 176 (218)
Q Consensus 124 ~l~~~l~~~~~livlD~~~~~~--------~~~~l~~~~~~~~------------~~~~ilittr~~~-------~~~~~ 176 (218)
.|++.++++||+..+. ..+.+.+.+.... .+..++.|.-... .....
T Consensus 1372 ------~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1372 ------LGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp ------TTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred ------CCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Q ss_pred CCCceeeCCCCChhHHHHHHHHhhcCCCCCCchhHhhhccc
Q 047309 177 GMDEIYKPNELNYHDALQLFNMKAFKIQKPLEECVQLSEGV 217 (218)
Q Consensus 177 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~i~~~i 217 (218)
+....+.+...+.++...+|.....+...-.+.+..++..+
T Consensus 1446 r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~l 1486 (3245)
T 3vkg_A 1446 RHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNL 1486 (3245)
T ss_dssp TTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHH
T ss_pred hhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHH
No 352
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.45 E-value=0.01 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.104 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVY 70 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~ 70 (218)
..+.+++|+||.|.||||+++.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999884
No 353
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.44 E-value=0.0022 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....++|.|++|+|||||+..+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999999999987
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.44 E-value=0.0013 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.....++|+|++|+|||||++.++.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4567899999999999999998876
No 355
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.43 E-value=0.0058 Score=51.01 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=26.5
Q ss_pred CCceEEEEEcCCCccHHHHH-HHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLA-RVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La-~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.++.-+.|.|.+|+|||+|+ ..+++... .+..+.+..+++
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGe 201 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQ 201 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESC
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC
Confidence 34566779999999999995 56666432 343433445555
No 356
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.43 E-value=0.006 Score=50.31 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+..-+.|.|.+|+|||+|+.++++...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 345567889999999999999988654
No 357
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.42 E-value=0.0019 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHh
Q 047309 51 MIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.++|.|++|+|||||++.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 358
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.42 E-value=0.0015 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....++|.|++|+|||||++.++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999987
No 359
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.42 E-value=0.0042 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....+|+|.|++|+||||+++.+.+.+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999998764
No 360
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.42 E-value=0.0064 Score=45.14 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
+.+|++.|+.|+||||+++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999977544
No 361
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.42 E-value=0.003 Score=47.70 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+.+++|.|++|+||||+++.+++.+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999977544
No 362
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.41 E-value=0.0042 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++.|.|++|+|||||++.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998754
No 363
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.40 E-value=0.0011 Score=50.79 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+...|+|.|..|+||||+++.+++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 445789999999999999999888765
No 364
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.40 E-value=0.0023 Score=48.01 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhccc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHE 76 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~ 76 (218)
.+.+|++.|++|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45789999999999999999999977554
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.0017 Score=49.87 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
...++|.|+.|+|||||++.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999988743
No 366
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.36 E-value=0.0045 Score=47.32 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=26.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
+++.|.|.+|+||||++..++..+......+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 45667899999999999999987765544555553
No 367
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.33 E-value=0.0097 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
+.++|+|++|+|||+++..++..+..
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999988887776543
No 368
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.33 E-value=0.0027 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+...|+|.|.+|+|||||+..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999986
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.33 E-value=0.0025 Score=44.59 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999873
No 370
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.30 E-value=0.0022 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..++|.|++|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998754
No 371
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.29 E-value=0.0038 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++.|.|++|+|||||++.++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 588999999999999999888643
No 372
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.28 E-value=0.0061 Score=48.48 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
..+++++.|.+|+||||++..++..+......+..+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 357889999999999999999998765554444444
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0032 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.....++|.|++|+|||+|+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999874
No 374
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.27 E-value=0.0055 Score=49.02 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc--ccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS--HEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~--~~~~~~~~~ 83 (218)
...+++++.|.+|+||||++..++..+. .....+..+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3458999999999999999998887665 444444444
No 375
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.27 E-value=0.0035 Score=46.68 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
++..+++.|+.|+||||+++.+++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999998765
No 376
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.27 E-value=0.0026 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHh
Q 047309 51 MIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~ 72 (218)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.25 E-value=0.0026 Score=51.18 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
...++|.|++|+|||||++.++..+.. ....+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 458999999999999999999886543 23444443
No 378
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.25 E-value=0.0053 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
....++|.|++|+|||||+..+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 379
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.24 E-value=0.003 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988863
No 380
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.22 E-value=0.0031 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998863
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.20 E-value=0.0031 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...++|.|++|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999988553
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.20 E-value=0.0091 Score=47.57 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+...++|.|++|+|||||+..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456889999999999999999998754
No 383
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.20 E-value=0.0048 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+++|.|++|+|||||+..++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999998744
No 384
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.19 E-value=0.0034 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.--|+|.|.+|+|||||+..+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999998886
No 385
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.19 E-value=0.0032 Score=44.04 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHh
Q 047309 51 MIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~ 72 (218)
-|+|.|.+|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.19 E-value=0.0042 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4588999999999999998886
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.19 E-value=0.0033 Score=43.88 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHHh
Q 047309 52 IGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~ 72 (218)
|+|.|.+|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999999863
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.18 E-value=0.0033 Score=44.08 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 389
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.18 E-value=0.0031 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
-|+|.|.+|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 390
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.18 E-value=0.0032 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999888873
No 391
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.18 E-value=0.0033 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999873
No 392
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.18 E-value=0.098 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.+.++|.|.+|+|||++++.+...+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999877754
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.17 E-value=0.0053 Score=44.94 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhhcccccceEE
Q 047309 51 MIGICGMGGLGKTNLARVVYDLISHEFEGSSF 82 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~ 82 (218)
+|++-|.-|+||||.++.+++.+......+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 57889999999999999999987665444443
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.17 E-value=0.0034 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..++|.|.+|+|||||+..+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999863
No 395
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.16 E-value=0.0034 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.-|+|.|.+|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999863
No 396
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0031 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||||+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3577999999999999999986
No 397
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.15 E-value=0.0057 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+++.|.|.+|+||||++..++..+......+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5677789999999999999998765544444444
No 398
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.14 E-value=0.0043 Score=52.42 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
...+|+++|.+|+||||+++.+++.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998664
No 399
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.14 E-value=0.0055 Score=45.91 Aligned_cols=108 Identities=13% Similarity=-0.013 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechhhhccCchHHHHHHHHHHHHhhccCCCcccccccHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVREKFKNKGSVISFQRQLLVEILKLEKDSIWNVGDGINILGSR 128 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (218)
..+.+++|+-|.||||.+...+.+...+...+.++-.... . ... ..+...+.... .........++...+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~-Ryg--~~i~sr~G~~~---~a~~i~~~~di~~~~--- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-T-RYS--SSFCTHDRNTM---EALPACLLRDVAQEA--- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-C-CC-------------C---EEEEESSGGGGHHHH---
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-c-cch--HHHHhhcCCee---EEEecCCHHHHHHHh---
Confidence 5788999999999999887777766555444443322211 1 111 22222221110 000111222232222
Q ss_pred hCCCeEEEEEeCCCChhHhhHHhcCCCCCCCCceEEEEeCCh
Q 047309 129 LQHKKVLLVIDDVVDIKQLEYLAGKREWFGSGSRIIVTSRDE 170 (218)
Q Consensus 129 l~~~~~livlD~~~~~~~~~~l~~~~~~~~~~~~ilittr~~ 170 (218)
+.--+|+||++.-......+...+. ..+..||+|.++.
T Consensus 89 --~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 --LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp --TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred --ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 3334999999853322444433332 2567899998883
No 400
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.13 E-value=0.0035 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998885
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.13 E-value=0.0032 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999873
No 402
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.13 E-value=0.0045 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999873
No 403
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.13 E-value=0.0047 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||||+..+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999986
No 404
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.13 E-value=0.0036 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|++.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 405
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.12 E-value=0.0045 Score=44.58 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999998863
No 406
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.12 E-value=0.0062 Score=45.79 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=25.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 52 IGICGMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
+.|.|.+|+||||++..++..+.+....+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455999999999999999997766654555553
No 407
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.12 E-value=0.0055 Score=42.69 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.-|++.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998863
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.11 E-value=0.0038 Score=43.69 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999986
No 409
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.11 E-value=0.0043 Score=53.40 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
+..+|+|.|.+|+||||+++.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 410
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.10 E-value=0.003 Score=44.16 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
-|+|.|.+|+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 467999999999999998865
No 411
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.10 E-value=0.0051 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999976
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.08 E-value=0.005 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988873
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.08 E-value=0.005 Score=43.60 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456889999999999999998874
No 414
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.08 E-value=0.0044 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.+|.|.|+.|+||||+++.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999763
No 415
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.08 E-value=0.0039 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999988863
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.08 E-value=0.0055 Score=49.00 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++..+.|.|+.|+|||||++.++....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4457899999999999999999998654
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.08 E-value=0.0031 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999873
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.0052 Score=42.85 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
.++.+|+|+.|.|||+|+.++..-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999887643
No 419
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.05 E-value=0.0062 Score=51.50 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=31.5
Q ss_pred HHHhhhcCCCCCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 37 LRSLMNKGPNDDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 37 l~~~l~~~~~~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
+.+.+...- ....++.|.|++|+|||||++.++.........++++
T Consensus 270 ld~vL~g~i-~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 270 LDEMCGGGF-FKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp HHHHTTSSE-ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHhCCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 444443321 4567899999999999999999998654433334454
No 420
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.05 E-value=0.0052 Score=44.14 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999874
No 421
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.04 E-value=0.0023 Score=46.91 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.....++|.|++|+|||||++.++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4456799999999999999988775
No 422
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0079 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+..-|+|.|.+|+|||+|+..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999999985
No 423
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.03 E-value=0.0038 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.-|++.|.+|+|||+|+..+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999987
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.03 E-value=0.0051 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999999886
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.03 E-value=0.0039 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+.++++|+|+.|.|||||++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3578999999999999999999864
No 426
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.02 E-value=0.0044 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
--|+|.|.+|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458899999999999997666543
No 427
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.02 E-value=0.012 Score=49.66 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.++..+.|.|.+|+|||+|+.++++.. +...++|. .+++
T Consensus 225 gkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~-~iGE 263 (588)
T 3mfy_A 225 AKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYI-GCGE 263 (588)
T ss_dssp ETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEE-ECCS
T ss_pred ccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEE-Eecc
Confidence 345678899999999999999988753 22344444 5555
No 428
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.01 E-value=0.0049 Score=44.09 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...-|+|.|.+|+|||+|+..+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988763
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.01 E-value=0.0033 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHh
Q 047309 51 MIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~~ 72 (218)
-|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4679999999999999998873
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.00 E-value=0.0044 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998873
No 431
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.00 E-value=0.0045 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999863
No 432
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.99 E-value=0.0044 Score=46.08 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHH
Q 047309 52 IGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~ 71 (218)
|+|.|.+|+|||+|+..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 67899999999999998886
No 433
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.99 E-value=0.0046 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||||+..+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999998886
No 434
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.98 E-value=0.0094 Score=43.43 Aligned_cols=35 Identities=14% Similarity=-0.132 Sum_probs=26.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSS 81 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~ 81 (218)
...++.+++|+.|.||||.+...++++..+...+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34579999999999999999888887654433333
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.98 E-value=0.0046 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999998863
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.98 E-value=0.0076 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998863
No 437
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.98 E-value=0.0043 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 438
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.98 E-value=0.018 Score=48.78 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEEEechh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFLADVRE 88 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~~~~~~ 88 (218)
.++..+.|.|.+|+|||+|+.++++.. +...++|. .+++
T Consensus 230 grGqr~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~-~iGE 268 (600)
T 3vr4_A 230 TKGGAAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYV-GCGE 268 (600)
T ss_dssp BTTCEEEEECCTTSCHHHHHHHHHHHS--SCSEEEEE-EEEE
T ss_pred cCCCEEeeecCCCccHHHHHHHHHhcc--CCCEEEEE-Eecc
Confidence 445678899999999999999998753 22344444 4444
No 439
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.98 E-value=0.005 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+.|.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999865
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.97 E-value=0.006 Score=50.36 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
.++..+.|.|++|+|||||++.++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567899999999999999999998653
No 441
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.97 E-value=0.0048 Score=43.85 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999988863
No 442
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.96 E-value=0.0048 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.-|+|.|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998873
No 443
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.95 E-value=0.0044 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999863
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0049 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998863
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.94 E-value=0.0048 Score=44.55 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999874
No 446
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.005 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||||+..+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 34688999999999999999986
No 447
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0037 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+..+.|.|+.|+|||||++.++.-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345789999999999999999998743
No 448
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.92 E-value=0.006 Score=50.83 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHhhc
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDLIS 74 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~~~ 74 (218)
....|++.|.+|+||||+++.+++.+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346789999999999999999998654
No 449
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.0058 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+..-|+|.|.+|+|||||+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346688999999999999988874
No 450
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.90 E-value=0.0046 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||||+..+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998876
No 451
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.90 E-value=0.0053 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999986
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.89 E-value=0.0037 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999998863
No 453
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.89 E-value=0.0049 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35688999999999999999985
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.89 E-value=0.0053 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999873
No 455
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.88 E-value=0.0053 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||||+..+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999886
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.0054 Score=51.85 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHH-HhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVY-DLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~-~~~~~~~~~~~~~ 83 (218)
....+++|.|++|+|||||++.++ .-+.......+++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 345799999999999999999953 3332223445555
No 457
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.88 E-value=0.23 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..++|.|++|+|||+++..++.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999997766654
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.005 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.-|+|.|.+|+|||+|+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998874
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.87 E-value=0.0055 Score=44.14 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
--|+|.|.+|+|||+|+..+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4588999999999999999886
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.87 E-value=0.0055 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998873
No 461
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.86 E-value=0.0054 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998873
No 462
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.86 E-value=0.0049 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+...|+|.|.+|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999873
No 463
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.85 E-value=0.0055 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...|+|.|.+|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999873
No 464
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0051 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999998874
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0051 Score=45.00 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998863
No 466
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0074 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998873
No 467
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.83 E-value=0.0052 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998863
No 468
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.83 E-value=0.0053 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 047309 50 RMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.-|++.|.+|+|||||+..+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998875
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.83 E-value=0.0052 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999873
No 470
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.83 E-value=0.0058 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35688999999999999999886
No 471
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.83 E-value=0.0058 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999873
No 472
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.82 E-value=0.006 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHh
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.....|+|.|.+|+|||+|+..+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988863
No 473
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.81 E-value=0.0042 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 047309 51 MIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 51 ~v~i~G~~GiGKT~La~~v~~ 71 (218)
-|+|.|++|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999764
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0054 Score=44.26 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999863
No 475
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.81 E-value=0.0083 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLI 73 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~ 73 (218)
..+|.|.|+.|+||||+++.+++++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 476
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.80 E-value=0.0055 Score=44.59 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
...-|+|.|.+|+|||+|+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456889999999999999999873
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.80 E-value=0.0062 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.....|+|.|.+|+|||||+..+..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999887
No 478
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.79 E-value=0.0061 Score=44.24 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
...-|+|.|.+|+|||+|+..+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345688999999999999999886
No 479
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.77 E-value=0.0073 Score=45.35 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.....|+|.|.+|+|||||+..+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3446788999999999999999987
No 480
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.77 E-value=0.0094 Score=46.31 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=30.9
Q ss_pred hHHHHHHhhhcCCCCCceEEEEE---cCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 33 RLEELRSLMNKGPNDDVRMIGIC---GMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 33 e~~~l~~~l~~~~~~~~~~v~i~---G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.+.++.+.+... .++++|+ +.+|+||||++..++..+......+..+
T Consensus 22 ~~~~~~r~~~~~----~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 22 ILEELRRILSNK----NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHH----CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCC----CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 455566666532 2455555 5999999999999998765544444444
No 481
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.77 E-value=0.0051 Score=50.45 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHH
Q 047309 52 IGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 52 v~i~G~~GiGKT~La~~v~~ 71 (218)
++|.|++|+|||||++.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999886
No 482
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0064 Score=43.69 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999873
No 483
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.75 E-value=0.024 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHhhcc
Q 047309 50 RMIGICGMGGLGKTNLARVVYDLISH 75 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~~~~ 75 (218)
+..+|+|++|+|||+++..++..+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999988888776543
No 484
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.74 E-value=0.0074 Score=43.53 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
....-|+|.|.+|+|||+|+..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999998886
No 485
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.73 E-value=0.016 Score=46.25 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 47 DDVRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 47 ~~~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
...+++++.|.+|+||||++..++..+......+..+
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 60 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV 60 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3456788889999999999998888654443334433
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.72 E-value=0.01 Score=42.93 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
+..-|+|.|.+|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999998875
No 487
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0062 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.--|+|.|.+|+|||||+..+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34678999999999999999987
No 488
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.71 E-value=0.011 Score=43.02 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=25.6
Q ss_pred eEEEEE-cCCCccHHHHHHHHHHhhcccccceEEEE
Q 047309 50 RMIGIC-GMGGLGKTNLARVVYDLISHEFEGSSFLA 84 (218)
Q Consensus 50 ~~v~i~-G~~GiGKT~La~~v~~~~~~~~~~~~~~~ 84 (218)
+++.|+ +.+|+||||++..++..+......+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 355565 78999999999999987765544555553
No 489
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.71 E-value=0.012 Score=44.86 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
+...|+|.|.+|+|||||+..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4466889999999999999999873
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.70 E-value=0.0063 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999886
No 491
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.69 E-value=0.0068 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-|+|.|.+|+|||+|+..+...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998863
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.68 E-value=0.0078 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.+.++|.|++|+||||+|..+..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.68 E-value=0.0053 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999863
No 494
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.67 E-value=0.0069 Score=43.92 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.--|+|.|.+|+|||+|+..+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999998886
No 495
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.0072 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
..-|+|.|.+|+|||+|+..+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999886
No 496
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.65 E-value=0.012 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHhhcccccceEEE
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDLISHEFEGSSFL 83 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~~~~~~~~~~~~ 83 (218)
.++++..|.+|+||||+|..++..+.+....+..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 36788889999999999999988665444344444
No 497
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.64 E-value=0.0075 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 047309 49 VRMIGICGMGGLGKTNLARVVYD 71 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~ 71 (218)
.+.++|.|++|+||||+|..+.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56789999999999999998876
No 498
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.64 E-value=0.014 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHh
Q 047309 48 DVRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 48 ~~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
....|++.|.+|+|||||+..+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999863
No 499
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.64 E-value=0.0059 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHh
Q 047309 49 VRMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 49 ~~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
..-|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346779999999999999876653
No 500
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.62 E-value=0.0077 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHh
Q 047309 50 RMIGICGMGGLGKTNLARVVYDL 72 (218)
Q Consensus 50 ~~v~i~G~~GiGKT~La~~v~~~ 72 (218)
--|+|.|.+|+|||+|+..+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45779999999999999998873
Done!