BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047313
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
PG +I YT R C+ R LL V + + D S R E+ +GR
Sbjct: 2 PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGR 53
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
P++FI ++GG D++ L +GKL LL+ +
Sbjct: 54 NTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQDV 88
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
PG VI YT R C + LL F E D S E R E+ SGR
Sbjct: 2 PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQER-SGR 54
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
P++FI ++GG D++ L ++GKL LL+
Sbjct: 55 NTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 43 CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
C + LL S V+F E + + R+E+ SGR P++FI ++IGG D++ L
Sbjct: 14 CHRAKALLSSKGVSFQELPIDGNAAKREEMIKR-SGRTTVPQIFIDAQHIGGYDDLYALD 72
Query: 103 EQGKLKKLLE 112
+G L LL+
Sbjct: 73 ARGGLDPLLK 82
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
+F+D L+ ++G PR+F+ G +IGGA + LH++GKL L+
Sbjct: 89 QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
+F+D L+ ++G PR+F+ G +IGGA + LH++GKL L+
Sbjct: 75 QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 119
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
+F+D L+ ++G PR+F+ G +IGGA + LH++GKL L+
Sbjct: 67 QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 47 RFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGK 106
+ LL S V+F E + + R+E+ SGR P++FI ++IGG D++ L +G
Sbjct: 18 KALLSSKGVSFQELPIDGNAAKREEMIKR-SGRTTVPQIFIDAQHIGGYDDLYALDARGG 76
Query: 107 LKKLLE 112
L LL+
Sbjct: 77 LDPLLK 82
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
E +D L +SG+ P ++I G++IGG ++ L + GKL ++L+ +
Sbjct: 61 EIQDAL-EEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 107
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
E +D L +SG+ P ++I G++IGG ++ L + GKL ++L+ +
Sbjct: 64 EIQDAL-EEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 110
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
E +D L +SG+ P ++I G++IGG ++ L + GKL ++L+ +
Sbjct: 81 EIQDAL-EEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 127
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 43 CRTIRFLLQSFKVTFYERDVSLHMEFRD--ELWSSLS---GRVIPPRLFIKGRYIGGADE 97
C ++ LL ++ ++ E D +L S+L+ GR P +FI G+ IGG D
Sbjct: 34 CNRVKQLLTQVGASYKVVELD---ELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 90
Query: 98 VVGLHEQGKLKKLLE 112
VV H++ +L LL+
Sbjct: 91 VVEKHQRNELLPLLQ 105
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 71 ELWSSLS---GRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
+L S+L+ GR P +FI G+ IGG D VV H++ +L LL+
Sbjct: 60 QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 76 LSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLL 111
L+G+ P +FI G++IGG + V L+ +G+L+ LL
Sbjct: 67 LTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 59 ERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
E D H E E ++GR P L + G GG +E+ LH QGKL + L+
Sbjct: 48 ELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 43 CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
+ I +L S V + D+ E R L + S P+L++KG +GG D V L
Sbjct: 35 SKQILEILNSTGVEYETFDILEDEEVRQGL-KAYSNWPTYPQLYVKGELVGGLDIVKELK 93
Query: 103 EQGKLKKLLEG 113
E G+L +L G
Sbjct: 94 ENGELLPILRG 104
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 77 SGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
+G+ P++FI ++IGG D++ L GKL LL
Sbjct: 63 NGKRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 71 ELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
E+ S ++ + P +F+ ++GG D+ ++ G L+KLL+
Sbjct: 60 EVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 75 SLSGRVIPPRLFIKGRYIGGADEV 98
++SGR P++FI G++IGG+D++
Sbjct: 213 AVSGRTTVPQVFIGGKHIGGSDDL 236
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG--RVIPPRL 85
Y+TS+ G R+ + +L ++ + D+S RDE+ +L+G + PP++
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEM-RALAGNPKATPPQI 64
Query: 86 FIKGRYIGGADEVVGLHEQGKLKKLLE 112
+Y G + V EQ L++ L+
Sbjct: 65 VNGDQYCGDYELFVEAVEQNTLQEFLK 91
>pdb|2CT6|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein 2
Length = 111
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-------SGR 79
I ++ I+K +D +RFL ++ K+ F E D+++ E R ++ ++ G
Sbjct: 14 IASSSGFVAIKKKQQDV--VRFL-EANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGN 70
Query: 80 VIPPRLFIKGRYIGGAD 96
+PP++F RY G D
Sbjct: 71 PLPPQIFNGDRYCGDYD 87
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 24/30 (80%)
Query: 83 PRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
P+L++ G +GG D V+ ++++G+L++L++
Sbjct: 72 PQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG--RVIPPRL 85
Y+TS+ G R+ + +L ++ + D+S RDE+ +L+G + PP++
Sbjct: 13 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEM-RTLAGNPKATPPQI 71
Query: 86 FIKGRYIGGADEVVGLHEQGKLKKLLE 112
Y G + V EQ L++ L+
Sbjct: 72 VNGNHYCGDYELFVEAVEQDTLQEFLK 98
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 24/30 (80%)
Query: 83 PRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
P+L++ G +GG D V+ ++++G+L++L++
Sbjct: 92 PQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 29 YTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG--RVIPPRLF 86
Y+TS+ G R+ + +L ++ + D+S RDE+ +L+G + PP++
Sbjct: 7 YSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEM-RTLAGNPKATPPQIV 65
Query: 87 IKGRYIGGADEVVGLHEQGKLKKLLE 112
Y G + V EQ L++ L+
Sbjct: 66 NGNHYCGDYELFVEAVEQDTLQEFLK 91
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 57 FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
F + + H + L+G PR+FI IGG+ ++V L + G+L L+ I
Sbjct: 44 FVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQI 101
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 43 CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
+ I +L S V + D+ E R L + S P+L+++G +GG D V L
Sbjct: 33 SKQILEILNSTGVEYETFDILEDEEVRQGL-KTFSNWPTYPQLYVRGDLVGGLDIVKELK 91
Query: 103 EQGKLKKLLEG 113
+ G+L +L+G
Sbjct: 92 DNGELLPILKG 102
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 36 IRKTFEDCRTIRFLLQSFKVT-----FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR 90
I+ T CR + +L + F + + H + L+G PR+FI
Sbjct: 19 IKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKD 78
Query: 91 YIGGADEVVGLHEQGKLKKLLEGI 114
IGG ++V L + G+L L+ I
Sbjct: 79 CIGGCSDLVSLQQSGELLTRLKQI 102
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 76 LSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLL 111
L+G+ P +F+ G++IGG + V L+ +G L+ +L
Sbjct: 68 LTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103
>pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State Of Cytochrome C554
From Nitrosomonas Europaea
pdb|1FT6|A Chain A, Reduced State Of Cytochrome C554 From Nitrosomonas
Europaea
pdb|1BVB|A Chain A, Heme-Packing Motifs Revealed By The Crystal Structure Of
Cytochrome C554 From Nitrosomonas Europaea
Length = 211
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 57 FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV----GLHEQGKLKKLLE 112
F ER + H+ + W P + +Y DE+V +HE KL+ + E
Sbjct: 130 FEERCSACHLNYEGSPWKGAKAPYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFE 189
Query: 113 GIPR 116
G P+
Sbjct: 190 GEPK 193
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 83 PRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
P+L++ +IGG D + + G+L LLE
Sbjct: 76 PQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 38 KTFEDC---RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGG 94
K F C +T+ +L+S F ++ L E + S P+L+I G + GG
Sbjct: 28 KDFPQCGFSQTVVQILKSLNAPFESVNI-LENELLRQGLKEYSSWPTFPQLYIDGEFFGG 86
Query: 95 ADEVVGLHEQGKLKKLLE 112
D V ++ G+L++ +E
Sbjct: 87 CDITVEAYKSGELQEQVE 104
>pdb|1U2X|A Chain A, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
pdb|1U2X|B Chain B, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
Length = 474
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFK---VTFYERDVSLHMEF 68
D IF + +G+R + D + + L+ K + F E+DV +H+EF
Sbjct: 238 DGAIF--SGYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEF 283
>pdb|3DRW|A Chain A, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
pdb|3DRW|B Chain B, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
Length = 474
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFK---VTFYERDVSLHMEF 68
D IF + +G+R + D + + L+ K + F E+DV +H+EF
Sbjct: 238 DGAIF--SGYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEF 283
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 67 EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
E +D L R +P R+FI IGG ++ +H++G+L L+ +
Sbjct: 55 EIQDYLQQLTGARTVP-RVFIGKECIGGCTDLESMHKRGELLTRLQQV 101
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 83 PRLFIKGRYIGGADEVVGLHEQGKLKKLLE--GIPRNLSD 120
P++++ G ++GG D ++ +H+ G L + L+ GI L D
Sbjct: 78 PQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSALLD 117
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGK 106
V+PP++ I +YI A +GL +GK
Sbjct: 137 VLPPQIIIGAQYIQAAGVALGLKMRGK 163
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 71 ELWSSLSGRVIPPRLFIKGRYIGGADEVVG-LHEQGKLKKLLEGIPRNLSDCSCNGCGNI 129
E W S I R +GG VG L E+G + + R C +GC I
Sbjct: 418 EAWHSQGKAAILVRAETSPEDVGGMHAAVGILTERGGMTSHAAVVARGWGKCCVSGCSGI 477
Query: 130 R 130
R
Sbjct: 478 R 478
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGK 106
V+PP++ I +YI A +GL +GK
Sbjct: 138 VLPPQIIIGAQYIQAAGVALGLKMRGK 164
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGK 106
V+PP++ I +YI A +GL +GK
Sbjct: 137 VLPPQIIIGAQYIQAAGVALGLKMRGK 163
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 80 VIPPRLFIKGRYIGGADEVVGLHEQGK 106
V+PP++ I +YI A +GL +GK
Sbjct: 138 VLPPQIIIGAQYIQAAGVALGLKMRGK 164
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 33 LRGIRKTFEDCRTIRFLL-QSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY 91
L + K F R I+ L + FK+TF RD+S ++SSLS + ++ R
Sbjct: 41 LADLEKAFA-AREIKSLASKEFKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRD 99
Query: 92 IGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCG 127
VV + ++ ++ + RN + S + G
Sbjct: 100 FLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEG 135
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 76 LSGRVIPPRLFIKGRYIGGADEV 98
++G+ P ++I G++IGG D++
Sbjct: 69 INGQRTVPNIYINGKHIGGNDDL 91
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 76 LSGRVIPPRLFIKGRYIGGADEV 98
++G+ P ++I G++IGG D++
Sbjct: 77 INGQRTVPNIYINGKHIGGNDDL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,283,973
Number of Sequences: 62578
Number of extensions: 203699
Number of successful extensions: 520
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 46
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)