Query 047313
Match_columns 174
No_of_seqs 219 out of 1430
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 5.1E-56 1.1E-60 367.3 14.2 162 9-174 116-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 6.5E-54 1.4E-58 331.1 16.0 144 25-170 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 6.6E-26 1.4E-30 162.4 8.9 88 25-112 1-91 (92)
4 TIGR00365 monothiol glutaredox 99.9 7.9E-24 1.7E-28 152.7 10.9 89 21-111 9-97 (97)
5 TIGR02189 GlrX-like_plant Glut 99.9 6.9E-24 1.5E-28 153.5 10.3 89 21-116 5-96 (99)
6 PRK10824 glutaredoxin-4; Provi 99.9 5.7E-24 1.2E-28 158.1 9.7 96 20-117 11-106 (115)
7 PHA03050 glutaredoxin; Provisi 99.9 2.2E-23 4.8E-28 153.3 10.8 91 21-118 10-106 (108)
8 cd03028 GRX_PICOT_like Glutare 99.9 4.5E-22 9.7E-27 141.3 9.8 86 21-108 5-90 (90)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 7.4E-22 1.6E-26 135.9 9.1 79 26-111 1-79 (79)
10 PRK10638 glutaredoxin 3; Provi 99.9 2.2E-21 4.8E-26 135.3 10.2 81 25-112 3-83 (83)
11 KOG1752 Glutaredoxin and relat 99.8 2.3E-20 5E-25 136.4 9.8 91 19-116 9-102 (104)
12 cd03418 GRX_GRXb_1_3_like Glut 99.8 5.2E-20 1.1E-24 124.9 9.8 75 25-105 1-75 (75)
13 cd03027 GRX_DEP Glutaredoxin ( 99.8 4E-20 8.6E-25 125.8 9.2 73 24-103 1-73 (73)
14 PTZ00062 glutaredoxin; Provisi 99.8 3.4E-20 7.4E-25 150.2 10.0 93 19-113 108-200 (204)
15 COG0278 Glutaredoxin-related p 99.8 3.6E-19 7.7E-24 128.0 9.0 94 19-114 10-104 (105)
16 COG0695 GrxC Glutaredoxin and 99.8 5.3E-19 1.2E-23 123.4 8.9 77 25-108 2-80 (80)
17 TIGR02180 GRX_euk Glutaredoxin 99.8 2.4E-18 5.2E-23 118.4 8.8 79 26-111 1-84 (84)
18 cd03419 GRX_GRXh_1_2_like Glut 99.8 2.8E-18 6E-23 117.9 8.7 79 25-110 1-82 (82)
19 cd03029 GRX_hybridPRX5 Glutare 99.8 4.1E-18 8.9E-23 115.4 9.0 70 25-102 2-71 (72)
20 PF04908 SH3BGR: SH3-binding, 99.8 2.5E-18 5.3E-23 124.7 7.9 88 25-112 2-97 (99)
21 TIGR02190 GlrX-dom Glutaredoxi 99.7 1.4E-17 3.1E-22 115.2 9.1 73 21-101 5-77 (79)
22 cd02066 GRX_family Glutaredoxi 99.7 2.3E-17 4.9E-22 109.0 9.5 72 25-103 1-72 (72)
23 TIGR02183 GRXA Glutaredoxin, G 99.7 2.4E-17 5.2E-22 116.1 9.0 74 26-105 2-81 (86)
24 PRK11200 grxA glutaredoxin 1; 99.7 2.9E-17 6.3E-22 114.8 9.2 74 25-104 2-81 (85)
25 PF00462 Glutaredoxin: Glutare 99.7 1.5E-16 3.2E-21 104.3 8.0 60 26-92 1-60 (60)
26 KOG0911 Glutaredoxin-related p 99.7 2.4E-16 5.1E-21 128.2 9.5 94 18-113 133-226 (227)
27 PRK12759 bifunctional gluaredo 99.6 1.5E-15 3.2E-20 134.4 10.3 86 24-118 2-95 (410)
28 TIGR02194 GlrX_NrdH Glutaredox 99.6 2.2E-14 4.8E-19 97.3 8.0 64 26-97 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.5 6.8E-14 1.5E-18 97.7 9.1 65 25-97 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 99.3 2E-11 4.3E-16 80.8 9.2 66 25-97 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.2 7.5E-11 1.6E-15 77.9 9.2 66 25-97 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 99.1 1.3E-09 2.7E-14 73.3 9.0 66 25-96 1-67 (77)
33 KOG4023 Uncharacterized conser 98.9 1.8E-09 4E-14 77.7 5.0 93 25-117 3-102 (108)
34 cd02973 TRX_GRX_like Thioredox 98.9 9.6E-09 2.1E-13 67.9 6.9 58 25-93 2-64 (67)
35 cd03041 GST_N_2GST_N GST_N fam 98.8 4.8E-08 1E-12 66.7 8.8 70 26-102 2-73 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.7 1.6E-07 3.5E-12 63.6 8.4 67 25-101 1-71 (77)
37 cd00570 GST_N_family Glutathio 98.6 1.3E-07 2.9E-12 60.8 6.0 67 27-100 2-68 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.6 3E-07 6.5E-12 61.4 7.5 67 27-102 2-69 (71)
39 cd03055 GST_N_Omega GST_N fami 98.5 5.4E-07 1.2E-11 63.3 7.8 75 19-101 12-87 (89)
40 cd03036 ArsC_like Arsenate Red 98.4 3.2E-07 6.9E-12 67.4 4.4 46 26-77 1-46 (111)
41 cd03059 GST_N_SspA GST_N famil 98.4 2.1E-06 4.5E-11 57.1 7.0 68 26-101 1-68 (73)
42 PF05768 DUF836: Glutaredoxin- 98.3 5.8E-06 1.3E-10 57.3 9.0 53 25-89 1-57 (81)
43 cd02977 ArsC_family Arsenate R 98.3 5.7E-07 1.2E-11 65.0 3.7 46 26-77 1-46 (105)
44 PRK01655 spxA transcriptional 98.3 2.2E-06 4.8E-11 64.9 5.8 45 26-76 2-46 (131)
45 cd03051 GST_N_GTT2_like GST_N 98.2 4.1E-06 8.9E-11 55.4 5.8 66 26-98 1-69 (74)
46 cd03060 GST_N_Omega_like GST_N 98.2 7.7E-06 1.7E-10 54.6 6.6 64 27-98 2-66 (71)
47 cd03045 GST_N_Delta_Epsilon GS 98.1 9.1E-06 2E-10 54.2 6.5 67 26-99 1-69 (74)
48 PF13417 GST_N_3: Glutathione 98.1 6.6E-06 1.4E-10 55.7 5.7 68 28-103 1-68 (75)
49 TIGR01617 arsC_related transcr 98.1 5.4E-06 1.2E-10 61.2 5.7 46 26-77 1-46 (117)
50 cd03032 ArsC_Spx Arsenate Redu 98.1 7.3E-06 1.6E-10 60.4 5.8 46 26-77 2-47 (115)
51 cd03056 GST_N_4 GST_N family, 98.1 1.7E-05 3.7E-10 52.5 6.8 67 26-99 1-69 (73)
52 TIGR00411 redox_disulf_1 small 98.0 4.8E-05 1E-09 51.4 8.1 55 25-90 2-62 (82)
53 PRK13344 spxA transcriptional 98.0 8.9E-06 1.9E-10 61.7 4.8 45 26-76 2-46 (132)
54 PRK12559 transcriptional regul 98.0 9.9E-06 2.2E-10 61.4 5.0 45 26-76 2-46 (131)
55 cd03035 ArsC_Yffb Arsenate Red 98.0 8.8E-06 1.9E-10 59.4 4.0 46 26-77 1-46 (105)
56 cd03033 ArsC_15kD Arsenate Red 97.9 1.6E-05 3.6E-10 58.8 4.4 46 25-76 1-46 (113)
57 cd03054 GST_N_Metaxin GST_N fa 97.9 0.00011 2.4E-09 49.0 8.1 60 35-103 11-70 (72)
58 KOG3029 Glutathione S-transfer 97.8 7E-05 1.5E-09 63.6 7.9 86 23-118 88-179 (370)
59 cd03026 AhpF_NTD_C TRX-GRX-lik 97.8 6.3E-05 1.4E-09 53.1 6.4 61 22-93 12-77 (89)
60 cd03058 GST_N_Tau GST_N family 97.7 0.00018 3.9E-09 48.1 7.0 69 26-101 1-69 (74)
61 cd03053 GST_N_Phi GST_N family 97.7 0.00025 5.4E-09 47.5 7.2 69 26-101 2-72 (76)
62 TIGR00412 redox_disulf_2 small 97.7 0.00023 4.9E-09 48.6 7.0 55 25-92 2-60 (76)
63 cd03052 GST_N_GDAP1 GST_N fami 97.7 0.00016 3.6E-09 48.8 6.3 68 26-100 1-70 (73)
64 PHA02125 thioredoxin-like prot 97.7 0.00023 5.1E-09 48.2 7.0 55 26-92 2-56 (75)
65 PF13192 Thioredoxin_3: Thiore 97.6 0.00028 6.1E-09 48.0 6.8 47 39-91 9-59 (76)
66 cd03076 GST_N_Pi GST_N family, 97.6 0.00055 1.2E-08 45.9 7.8 68 26-101 2-69 (73)
67 COG4545 Glutaredoxin-related p 97.6 0.00025 5.4E-09 49.0 5.9 65 27-98 5-81 (85)
68 COG1393 ArsC Arsenate reductas 97.5 0.00011 2.4E-09 54.7 4.1 46 25-76 2-47 (117)
69 cd03061 GST_N_CLIC GST_N famil 97.5 0.00095 2.1E-08 47.6 8.6 77 25-103 5-83 (91)
70 cd03042 GST_N_Zeta GST_N famil 97.5 0.00035 7.7E-09 46.1 6.1 66 27-99 2-69 (73)
71 cd03039 GST_N_Sigma_like GST_N 97.5 0.00063 1.4E-08 45.2 7.0 67 27-100 2-68 (72)
72 TIGR00014 arsC arsenate reduct 97.4 0.00019 4E-09 53.0 4.3 46 26-77 1-46 (114)
73 cd03034 ArsC_ArsC Arsenate Red 97.4 0.0002 4.2E-09 52.7 4.3 44 26-75 1-44 (112)
74 cd03048 GST_N_Ure2p_like GST_N 97.4 0.00069 1.5E-08 46.0 6.7 67 26-100 2-73 (81)
75 cd03049 GST_N_3 GST_N family, 97.4 0.00056 1.2E-08 45.5 5.9 65 27-99 2-69 (73)
76 PRK10853 putative reductase; P 97.4 0.00022 4.8E-09 53.1 4.1 46 26-77 2-47 (118)
77 PRK10026 arsenate reductase; P 97.4 0.00026 5.7E-09 54.4 4.5 46 25-76 3-48 (141)
78 TIGR01616 nitro_assoc nitrogen 97.3 0.0003 6.6E-09 53.0 4.5 44 25-74 2-45 (126)
79 PLN03165 chaperone protein dna 97.3 0.00018 3.9E-09 53.2 2.9 54 119-174 40-93 (111)
80 PRK10387 glutaredoxin 2; Provi 97.3 0.00095 2.1E-08 52.8 7.2 70 26-104 1-71 (210)
81 TIGR02182 GRXB Glutaredoxin, G 97.3 0.00084 1.8E-08 53.9 6.8 68 28-104 2-70 (209)
82 cd03080 GST_N_Metaxin_like GST 97.2 0.0031 6.7E-08 42.4 7.9 68 26-102 2-70 (75)
83 cd02975 PfPDO_like_N Pyrococcu 97.1 0.0011 2.3E-08 48.5 5.1 56 22-87 21-81 (113)
84 cd01659 TRX_superfamily Thiore 97.1 0.003 6.4E-08 38.2 6.1 56 26-89 1-61 (69)
85 cd03050 GST_N_Theta GST_N fami 97.0 0.0038 8.3E-08 41.8 6.8 66 26-98 1-68 (76)
86 cd02949 TRX_NTR TRX domain, no 96.9 0.0095 2.1E-07 41.8 8.7 59 25-94 16-82 (97)
87 cd03043 GST_N_1 GST_N family, 96.9 0.004 8.6E-08 41.8 6.4 65 34-99 4-69 (73)
88 cd02947 TRX_family TRX family; 96.9 0.0075 1.6E-07 40.0 7.7 59 25-94 13-78 (93)
89 cd03038 GST_N_etherase_LigE GS 96.9 0.0024 5.2E-08 43.7 5.3 74 27-102 2-79 (84)
90 cd03044 GST_N_EF1Bgamma GST_N 96.9 0.0035 7.7E-08 42.0 5.9 64 27-97 2-67 (75)
91 cd03046 GST_N_GTT1_like GST_N 96.8 0.0047 1E-07 41.0 6.0 67 27-101 2-70 (76)
92 PRK09481 sspA stringent starva 96.8 0.005 1.1E-07 49.2 7.0 69 24-100 9-77 (211)
93 PF03960 ArsC: ArsC family; I 96.7 0.0034 7.3E-08 45.7 5.1 38 39-76 5-42 (110)
94 cd03047 GST_N_2 GST_N family, 96.7 0.01 2.2E-07 39.4 6.6 65 27-98 2-68 (73)
95 PF13409 GST_N_2: Glutathione 96.6 0.0025 5.4E-08 42.5 3.4 63 40-103 2-68 (70)
96 cd03057 GST_N_Beta GST_N famil 96.6 0.008 1.7E-07 40.2 5.9 64 27-98 2-68 (77)
97 cd02953 DsbDgamma DsbD gamma f 96.6 0.011 2.4E-07 41.8 6.9 56 25-87 14-78 (104)
98 TIGR00862 O-ClC intracellular 96.5 0.015 3.2E-07 48.2 8.1 76 26-103 3-80 (236)
99 TIGR02187 GlrX_arch Glutaredox 96.4 0.015 3.3E-07 46.9 7.6 55 24-89 135-194 (215)
100 PHA02278 thioredoxin-like prot 96.4 0.024 5.2E-07 41.0 7.7 75 11-93 4-86 (103)
101 TIGR01295 PedC_BrcD bacterioci 96.4 0.022 4.8E-07 42.3 7.6 58 38-95 33-106 (122)
102 TIGR03140 AhpF alkyl hydropero 96.2 0.019 4.1E-07 52.2 7.7 63 21-94 116-183 (515)
103 PRK15317 alkyl hydroperoxide r 96.1 0.018 4E-07 52.3 7.3 61 22-93 116-181 (517)
104 PRK09381 trxA thioredoxin; Pro 96.1 0.08 1.7E-06 37.5 9.2 87 13-113 12-106 (109)
105 PF00085 Thioredoxin: Thioredo 96.1 0.063 1.4E-06 36.9 8.3 61 23-93 17-85 (103)
106 KOG0406 Glutathione S-transfer 96.0 0.037 8.1E-07 45.9 8.0 72 23-101 7-78 (231)
107 PRK15113 glutathione S-transfe 96.0 0.039 8.4E-07 44.1 7.7 72 24-100 4-77 (214)
108 cd03077 GST_N_Alpha GST_N fami 95.9 0.067 1.5E-06 36.3 7.6 65 26-98 2-68 (79)
109 TIGR03143 AhpF_homolog putativ 95.9 0.028 6.2E-07 51.7 7.3 59 22-91 476-539 (555)
110 cd02957 Phd_like Phosducin (Ph 95.8 0.078 1.7E-06 38.3 7.9 57 39-101 35-98 (113)
111 cd02989 Phd_like_TxnDC9 Phosdu 95.7 0.13 2.8E-06 37.4 9.0 65 24-98 23-94 (113)
112 PF00684 DnaJ_CXXCXGXG: DnaJ c 95.7 0.012 2.5E-07 39.3 2.9 44 130-173 14-62 (66)
113 PLN02473 glutathione S-transfe 95.6 0.043 9.4E-07 43.5 6.6 69 26-101 3-73 (214)
114 KOG0910 Thioredoxin-like prote 95.6 0.037 8E-07 43.0 5.9 91 10-114 49-147 (150)
115 COG0484 DnaJ DnaJ-class molecu 95.6 0.0069 1.5E-07 53.4 2.0 54 120-174 142-204 (371)
116 PTZ00051 thioredoxin; Provisio 95.5 0.094 2E-06 36.2 7.4 51 39-94 29-86 (98)
117 TIGR01262 maiA maleylacetoacet 95.4 0.03 6.5E-07 44.1 5.0 62 39-101 7-71 (210)
118 TIGR01068 thioredoxin thioredo 95.1 0.17 3.7E-06 34.5 7.6 59 25-93 16-82 (101)
119 cd02956 ybbN ybbN protein fami 95.0 0.14 3.1E-06 35.2 6.9 57 25-92 15-79 (96)
120 PRK10877 protein disulfide iso 95.0 0.21 4.6E-06 41.1 9.0 35 20-60 105-142 (232)
121 PLN02817 glutathione dehydroge 95.0 0.072 1.6E-06 44.8 6.3 62 39-102 72-133 (265)
122 PF13098 Thioredoxin_2: Thiore 94.9 0.12 2.5E-06 36.7 6.3 67 23-96 6-103 (112)
123 cd02985 TRX_CDSP32 TRX family, 94.8 0.38 8.2E-06 34.1 8.9 62 24-93 17-85 (103)
124 cd02965 HyaE HyaE family; HyaE 94.8 0.27 5.9E-06 36.3 8.3 65 23-96 28-100 (111)
125 PRK10996 thioredoxin 2; Provis 94.7 0.21 4.6E-06 37.6 7.7 75 25-113 55-137 (139)
126 PF10865 DUF2703: Domain of un 94.7 0.48 1E-05 35.5 9.3 84 32-147 7-104 (120)
127 PLN02378 glutathione S-transfe 94.7 0.099 2.1E-06 41.9 6.1 62 38-101 18-79 (213)
128 TIGR02187 GlrX_arch Glutaredox 94.7 0.13 2.9E-06 41.4 6.9 63 21-92 18-90 (215)
129 cd02954 DIM1 Dim1 family; Dim1 94.6 0.36 7.7E-06 35.8 8.5 60 23-93 14-82 (114)
130 KOG2813 Predicted molecular ch 94.6 0.027 5.9E-07 48.8 2.8 55 120-174 187-263 (406)
131 cd02951 SoxW SoxW family; SoxW 94.4 0.13 2.8E-06 37.5 5.7 58 25-89 17-93 (125)
132 KOG1422 Intracellular Cl- chan 94.4 0.16 3.5E-06 41.6 6.6 62 39-104 20-83 (221)
133 PRK10767 chaperone protein Dna 94.2 0.041 8.9E-07 48.3 3.1 52 120-174 142-202 (371)
134 cd03079 GST_N_Metaxin2 GST_N f 94.0 0.28 6.1E-06 33.5 6.4 55 40-102 17-71 (74)
135 PRK14300 chaperone protein Dna 94.0 0.044 9.5E-07 48.2 2.9 52 120-174 145-205 (372)
136 cd02963 TRX_DnaJ TRX domain, D 94.0 1 2.3E-05 32.2 9.8 71 12-93 12-93 (111)
137 cd02959 ERp19 Endoplasmic reti 94.0 0.17 3.7E-06 37.1 5.6 61 25-93 22-91 (117)
138 cd03020 DsbA_DsbC_DsbG DsbA fa 93.5 0.73 1.6E-05 36.4 8.9 37 20-62 75-113 (197)
139 cd02996 PDI_a_ERp44 PDIa famil 93.4 0.6 1.3E-05 33.0 7.5 55 25-90 21-89 (108)
140 cd02994 PDI_a_TMX PDIa family, 93.4 0.28 6.1E-06 34.1 5.7 52 25-87 19-77 (101)
141 PLN02395 glutathione S-transfe 93.3 0.3 6.4E-06 38.6 6.3 69 26-102 3-73 (215)
142 PRK14285 chaperone protein Dna 93.3 0.086 1.9E-06 46.3 3.4 52 120-174 146-206 (365)
143 cd02984 TRX_PICOT TRX domain, 93.1 1.3 2.7E-05 30.3 8.7 57 25-92 17-81 (97)
144 TIGR01126 pdi_dom protein disu 93.1 0.62 1.3E-05 31.8 7.0 55 22-87 13-75 (102)
145 cd02961 PDI_a_family Protein D 93.1 0.8 1.7E-05 30.7 7.5 53 24-87 17-77 (101)
146 PRK10357 putative glutathione 93.0 0.22 4.8E-06 39.0 5.2 64 27-98 2-66 (202)
147 cd03078 GST_N_Metaxin1_like GS 92.8 0.95 2.1E-05 30.4 7.4 60 35-103 11-70 (73)
148 PRK13972 GSH-dependent disulfi 92.8 0.48 1E-05 37.7 6.9 54 26-87 2-57 (215)
149 PRK14284 chaperone protein Dna 92.8 0.1 2.2E-06 46.2 3.2 52 120-174 158-218 (391)
150 cd02987 Phd_like_Phd Phosducin 92.7 1.2 2.7E-05 35.0 9.0 63 24-97 84-153 (175)
151 COG3019 Predicted metal-bindin 92.6 0.62 1.3E-05 35.9 6.9 75 22-106 24-104 (149)
152 PRK14287 chaperone protein Dna 92.6 0.11 2.4E-06 45.7 3.2 55 120-174 138-202 (371)
153 PRK14298 chaperone protein Dna 92.5 0.11 2.5E-06 45.8 3.2 55 120-174 141-205 (377)
154 COG0625 Gst Glutathione S-tran 92.5 0.29 6.3E-06 38.7 5.3 66 27-99 2-69 (211)
155 cd03065 PDI_b_Calsequestrin_N 92.4 0.66 1.4E-05 34.5 6.7 62 22-93 26-101 (120)
156 cd03075 GST_N_Mu GST_N family, 92.2 0.98 2.1E-05 30.8 7.0 58 41-98 10-74 (82)
157 cd02948 TRX_NDPK TRX domain, T 92.1 1.1 2.5E-05 31.4 7.5 56 25-92 20-84 (102)
158 PF00684 DnaJ_CXXCXGXG: DnaJ c 92.1 0.18 4E-06 33.4 3.1 37 120-166 15-66 (66)
159 PF11009 DUF2847: Protein of u 92.1 1.7 3.7E-05 31.8 8.4 69 22-95 18-94 (105)
160 cd03004 PDI_a_ERdj5_C PDIa fam 92.1 1.1 2.3E-05 31.2 7.3 55 24-89 21-83 (104)
161 PTZ00057 glutathione s-transfe 92.1 0.93 2E-05 35.9 7.7 71 24-100 3-77 (205)
162 PRK14286 chaperone protein Dna 92.1 0.12 2.5E-06 45.6 2.7 52 120-174 150-210 (372)
163 PRK14288 chaperone protein Dna 92.1 0.12 2.7E-06 45.4 2.9 52 120-174 140-199 (369)
164 PF02798 GST_N: Glutathione S- 92.1 0.5 1.1E-05 31.7 5.3 54 42-96 11-68 (76)
165 PF06953 ArsD: Arsenical resis 92.0 0.34 7.3E-06 36.5 4.7 56 44-101 30-94 (123)
166 PRK14301 chaperone protein Dna 92.0 0.12 2.6E-06 45.6 2.6 52 120-174 144-204 (373)
167 PRK14282 chaperone protein Dna 91.9 0.14 3E-06 45.0 3.0 55 120-174 152-216 (369)
168 PRK14291 chaperone protein Dna 91.9 0.14 3E-06 45.3 3.0 52 120-174 156-215 (382)
169 cd02998 PDI_a_ERp38 PDIa famil 91.9 0.94 2E-05 31.1 6.8 53 24-87 20-81 (105)
170 COG3118 Thioredoxin domain-con 91.8 0.36 7.7E-06 41.6 5.2 76 25-113 45-128 (304)
171 cd02962 TMX2 TMX2 family; comp 91.7 1.1 2.4E-05 34.6 7.5 63 26-94 51-123 (152)
172 PRK14294 chaperone protein Dna 91.7 0.16 3.4E-06 44.7 3.0 52 120-174 144-204 (366)
173 PRK14289 chaperone protein Dna 91.6 0.15 3.2E-06 45.1 2.9 55 120-174 154-218 (386)
174 cd03001 PDI_a_P5 PDIa family, 91.6 1.4 3E-05 30.3 7.4 52 25-87 21-78 (103)
175 PRK14280 chaperone protein Dna 91.6 0.18 3.8E-06 44.5 3.3 55 120-174 143-207 (376)
176 PRK11752 putative S-transferas 91.4 0.85 1.8E-05 38.0 7.1 73 20-100 39-123 (264)
177 PRK14295 chaperone protein Dna 91.4 0.16 3.5E-06 45.0 2.8 52 120-174 166-226 (389)
178 cd03003 PDI_a_ERdj5_N PDIa fam 91.3 1.2 2.6E-05 30.9 6.8 56 24-90 20-83 (101)
179 PRK14297 chaperone protein Dna 91.3 0.18 3.9E-06 44.5 3.0 55 120-174 148-212 (380)
180 TIGR02349 DnaJ_bact chaperone 91.2 0.2 4.3E-06 43.7 3.1 55 120-174 143-207 (354)
181 cd02999 PDI_a_ERp44_like PDIa 91.2 1.2 2.7E-05 31.4 6.8 55 22-87 18-78 (100)
182 PRK14290 chaperone protein Dna 91.1 0.21 4.5E-06 43.8 3.2 55 120-174 149-212 (365)
183 KOG4244 Failed axon connection 90.9 0.68 1.5E-05 39.3 6.0 67 24-99 44-111 (281)
184 PRK14296 chaperone protein Dna 90.9 0.19 4E-06 44.4 2.7 55 120-174 149-213 (372)
185 cd03002 PDI_a_MPD1_like PDI fa 90.8 0.88 1.9E-05 31.8 5.8 54 25-87 21-80 (109)
186 PRK14279 chaperone protein Dna 90.7 0.19 4.2E-06 44.5 2.7 51 120-173 173-232 (392)
187 cd02972 DsbA_family DsbA famil 90.7 0.84 1.8E-05 30.4 5.4 32 26-63 1-38 (98)
188 cd03005 PDI_a_ERp46 PDIa famil 90.6 0.93 2E-05 31.1 5.7 57 25-92 19-86 (102)
189 PRK14279 chaperone protein Dna 90.6 0.22 4.7E-06 44.2 2.9 38 120-168 190-238 (392)
190 TIGR02642 phage_xxxx uncharact 90.6 0.19 4.1E-06 40.4 2.3 27 120-146 99-130 (186)
191 PRK14293 chaperone protein Dna 90.6 0.21 4.6E-06 44.0 2.8 55 120-174 143-207 (374)
192 PF07315 DUF1462: Protein of u 90.5 2 4.2E-05 30.7 7.1 63 27-94 1-80 (93)
193 PRK14282 chaperone protein Dna 90.5 0.35 7.7E-06 42.5 4.1 39 120-169 169-222 (369)
194 PRK14285 chaperone protein Dna 90.5 0.22 4.7E-06 43.8 2.8 38 120-168 163-211 (365)
195 PRK14276 chaperone protein Dna 90.5 0.25 5.3E-06 43.7 3.1 55 120-174 146-210 (380)
196 KOG0868 Glutathione S-transfer 90.4 0.53 1.1E-05 38.0 4.6 73 24-103 4-79 (217)
197 PRK14280 chaperone protein Dna 90.4 0.23 5E-06 43.8 2.9 38 120-168 160-212 (376)
198 PRK14278 chaperone protein Dna 90.3 0.29 6.3E-06 43.2 3.4 55 120-174 139-203 (378)
199 PRK10542 glutathionine S-trans 90.1 0.73 1.6E-05 35.9 5.2 66 27-100 2-71 (201)
200 PRK14301 chaperone protein Dna 90.0 0.26 5.7E-06 43.4 2.9 37 121-168 162-209 (373)
201 PRK14296 chaperone protein Dna 90.0 0.24 5.2E-06 43.6 2.7 38 120-168 166-218 (372)
202 PRK14286 chaperone protein Dna 89.8 0.28 6.2E-06 43.2 3.0 38 121-169 168-216 (372)
203 PRK14277 chaperone protein Dna 89.7 0.31 6.7E-06 43.1 3.1 55 120-174 155-219 (386)
204 PRK14300 chaperone protein Dna 89.7 0.28 6E-06 43.2 2.8 38 120-168 162-210 (372)
205 PRK10767 chaperone protein Dna 89.7 0.32 7E-06 42.7 3.2 37 121-168 160-207 (371)
206 PRK14276 chaperone protein Dna 89.7 0.27 5.8E-06 43.4 2.7 38 120-168 163-215 (380)
207 PRK14298 chaperone protein Dna 89.7 0.29 6.2E-06 43.2 2.9 37 121-168 159-210 (377)
208 cd02988 Phd_like_VIAF Phosduci 89.5 2.4 5.2E-05 33.9 7.9 61 25-98 104-171 (192)
209 PRK14284 chaperone protein Dna 89.4 0.29 6.3E-06 43.4 2.7 38 120-168 175-223 (391)
210 PRK14277 chaperone protein Dna 89.3 0.33 7E-06 43.0 2.9 38 120-168 172-224 (386)
211 cd02952 TRP14_like Human TRX-r 89.2 1.2 2.7E-05 33.1 5.6 47 40-87 40-96 (119)
212 PRK14278 chaperone protein Dna 89.2 0.32 7E-06 42.9 2.8 38 120-168 156-208 (378)
213 PRK14297 chaperone protein Dna 89.1 0.35 7.5E-06 42.7 3.0 38 120-168 165-217 (380)
214 KOG4420 Uncharacterized conser 89.0 0.19 4E-06 42.7 1.1 86 9-104 13-100 (325)
215 PRK14288 chaperone protein Dna 88.9 0.4 8.6E-06 42.2 3.2 38 120-168 156-204 (369)
216 PRK14292 chaperone protein Dna 88.8 0.36 7.8E-06 42.4 2.8 54 120-173 139-203 (371)
217 PRK14283 chaperone protein Dna 88.7 0.38 8.3E-06 42.4 3.0 55 120-174 146-210 (378)
218 PRK14294 chaperone protein Dna 88.6 0.4 8.6E-06 42.1 3.0 37 121-168 162-209 (366)
219 cd02993 PDI_a_APS_reductase PD 88.5 2.1 4.6E-05 30.4 6.3 54 23-86 22-83 (109)
220 COG0178 UvrA Excinuclease ATPa 88.4 0.44 9.5E-06 46.2 3.3 52 91-143 697-765 (935)
221 cd02950 TxlA TRX-like protein 88.4 1.5 3.2E-05 33.2 5.7 60 25-93 23-91 (142)
222 PRK14295 chaperone protein Dna 88.4 0.42 9.1E-06 42.4 3.0 38 120-168 183-231 (389)
223 PRK14290 chaperone protein Dna 88.3 0.47 1E-05 41.6 3.2 38 120-168 165-217 (365)
224 COG5494 Predicted thioredoxin/ 88.2 2.2 4.8E-05 35.3 6.8 60 25-95 12-74 (265)
225 PRK14281 chaperone protein Dna 87.9 0.5 1.1E-05 42.0 3.2 55 120-174 163-226 (397)
226 PTZ00037 DnaJ_C chaperone prot 87.8 0.53 1.1E-05 42.3 3.3 55 120-174 150-215 (421)
227 PTZ00037 DnaJ_C chaperone prot 87.8 0.4 8.7E-06 43.1 2.5 41 120-169 166-221 (421)
228 PRK14289 chaperone protein Dna 87.7 0.64 1.4E-05 41.1 3.7 38 120-168 171-223 (386)
229 COG2999 GrxB Glutaredoxin 2 [P 87.6 0.5 1.1E-05 38.1 2.7 62 39-103 8-70 (215)
230 cd02955 SSP411 TRX domain, SSP 87.5 3.5 7.6E-05 30.7 7.1 65 25-95 17-97 (124)
231 PF13901 DUF4206: Domain of un 87.5 0.074 1.6E-06 43.1 -2.1 86 81-173 102-195 (202)
232 PRK14281 chaperone protein Dna 87.4 0.5 1.1E-05 42.0 2.9 38 120-168 179-231 (397)
233 cd03000 PDI_a_TMX3 PDIa family 87.3 2.5 5.4E-05 29.6 6.0 46 39-89 26-81 (104)
234 cd03006 PDI_a_EFP1_N PDIa fami 87.2 1.6 3.4E-05 32.0 5.0 57 24-90 31-95 (113)
235 cd02997 PDI_a_PDIR PDIa family 87.2 1.7 3.7E-05 29.8 5.0 59 24-91 19-87 (104)
236 cd02995 PDI_a_PDI_a'_C PDIa fa 87.1 2.6 5.7E-05 28.8 6.0 53 23-87 19-79 (104)
237 TIGR02349 DnaJ_bact chaperone 86.7 0.65 1.4E-05 40.4 3.2 39 120-169 160-213 (354)
238 PTZ00062 glutaredoxin; Provisi 86.5 4.9 0.00011 32.6 8.0 70 7-95 2-78 (204)
239 PRK14287 chaperone protein Dna 85.4 0.64 1.4E-05 40.9 2.5 38 120-168 155-207 (371)
240 PF13728 TraF: F plasmid trans 85.2 3.9 8.4E-05 33.3 6.9 59 22-87 120-189 (215)
241 PF13719 zinc_ribbon_5: zinc-r 84.8 0.62 1.3E-05 27.5 1.5 32 131-164 2-33 (37)
242 COG0484 DnaJ DnaJ-class molecu 84.7 0.97 2.1E-05 40.1 3.2 38 120-168 159-209 (371)
243 PRK14291 chaperone protein Dna 84.6 0.87 1.9E-05 40.2 3.0 37 120-168 173-220 (382)
244 PRK14293 chaperone protein Dna 84.5 0.93 2E-05 39.9 3.1 37 121-168 161-212 (374)
245 cd02992 PDI_a_QSOX PDIa family 84.4 3.8 8.2E-05 29.6 5.9 55 24-87 21-84 (114)
246 PRK14283 chaperone protein Dna 84.4 1.3 2.7E-05 39.1 3.9 38 120-168 163-215 (378)
247 PLN03165 chaperone protein dna 84.1 0.88 1.9E-05 33.6 2.4 25 120-144 75-99 (111)
248 cd02986 DLP Dim1 family, Dim1- 83.9 2.4 5.3E-05 31.4 4.7 61 22-92 13-81 (114)
249 PRK14292 chaperone protein Dna 83.6 1 2.2E-05 39.5 3.0 38 120-168 157-209 (371)
250 PRK13728 conjugal transfer pro 83.4 4.3 9.3E-05 32.5 6.2 57 25-87 72-142 (181)
251 PF06764 DUF1223: Protein of u 83.1 2.9 6.2E-05 34.0 5.2 65 26-96 2-86 (202)
252 PTZ00443 Thioredoxin domain-co 82.7 4.3 9.4E-05 33.4 6.2 57 25-92 55-119 (224)
253 TIGR02740 TraF-like TraF-like 82.7 3.9 8.4E-05 34.5 6.0 59 22-87 166-235 (271)
254 KOG0867 Glutathione S-transfer 82.3 4.3 9.3E-05 33.0 6.0 70 25-101 2-73 (226)
255 cd03009 TryX_like_TryX_NRX Try 82.1 9 0.0002 27.7 7.2 57 25-87 20-105 (131)
256 TIGR00595 priA primosomal prot 82.0 1.2 2.7E-05 40.7 3.0 45 121-174 214-260 (505)
257 KOG1695 Glutathione S-transfer 81.8 4.9 0.00011 32.8 6.1 57 40-98 12-68 (206)
258 COG4837 Uncharacterized protei 81.8 6.3 0.00014 28.5 5.8 68 22-94 3-87 (106)
259 PF11331 DUF3133: Protein of u 81.6 0.81 1.7E-05 28.6 1.1 39 127-165 2-40 (46)
260 cd02982 PDI_b'_family Protein 80.9 6.5 0.00014 26.9 5.8 52 25-87 15-74 (103)
261 PF13462 Thioredoxin_4: Thiore 80.8 2.6 5.6E-05 31.4 4.0 23 79-101 134-156 (162)
262 cd03022 DsbA_HCCA_Iso DsbA fam 80.6 2.4 5.3E-05 32.6 3.8 57 45-102 125-188 (192)
263 PRK00293 dipZ thiol:disulfide 80.5 7.1 0.00015 36.4 7.4 48 39-87 485-540 (571)
264 PF01873 eIF-5_eIF-2B: Domain 80.4 0.44 9.5E-06 35.9 -0.4 46 102-164 77-122 (125)
265 cd02964 TryX_like_family Trypa 79.7 12 0.00026 27.2 7.2 58 25-88 19-107 (132)
266 PF14595 Thioredoxin_9: Thiore 79.3 0.82 1.8E-05 34.3 0.7 58 22-87 41-103 (129)
267 PLN00410 U5 snRNP protein, DIM 79.1 3.5 7.5E-05 31.7 4.2 55 26-90 27-89 (142)
268 KOG0907 Thioredoxin [Posttrans 78.8 15 0.00033 26.5 7.3 60 23-92 21-87 (106)
269 smart00653 eIF2B_5 domain pres 78.7 1.2 2.6E-05 32.8 1.4 30 131-164 80-109 (110)
270 TIGR02642 phage_xxxx uncharact 78.0 1.7 3.8E-05 34.9 2.3 31 130-169 98-128 (186)
271 TIGR00311 aIF-2beta translatio 77.6 2 4.3E-05 32.7 2.4 34 131-168 97-130 (133)
272 PRK03988 translation initiatio 77.5 1.7 3.7E-05 33.3 2.0 34 131-168 102-135 (138)
273 KOG0712 Molecular chaperone (D 77.0 2.9 6.2E-05 36.7 3.5 69 106-174 110-193 (337)
274 PF10568 Tom37: Outer mitochon 76.7 12 0.00025 25.2 5.8 54 39-101 13-70 (72)
275 PRK14873 primosome assembly pr 76.7 2.5 5.5E-05 40.2 3.3 46 120-174 383-429 (665)
276 PF14354 Lar_restr_allev: Rest 76.1 2.1 4.7E-05 27.4 1.9 33 131-164 3-37 (61)
277 TIGR00630 uvra excinuclease AB 75.8 2.1 4.5E-05 42.2 2.6 62 82-143 682-771 (924)
278 PRK12336 translation initiatio 74.5 2.5 5.5E-05 34.2 2.4 33 131-167 98-130 (201)
279 smart00834 CxxC_CXXC_SSSS Puta 74.2 2.1 4.5E-05 25.1 1.4 9 156-164 26-34 (41)
280 cd03010 TlpA_like_DsbE TlpA-li 74.0 29 0.00064 24.7 8.1 36 39-74 36-75 (127)
281 PF14205 Cys_rich_KTR: Cystein 73.8 3.5 7.6E-05 26.7 2.4 39 129-168 2-40 (55)
282 PRK05580 primosome assembly pr 73.3 3 6.5E-05 39.6 2.9 46 120-174 381-428 (679)
283 PF07894 DUF1669: Protein of u 72.4 12 0.00025 32.2 6.0 87 1-91 96-185 (284)
284 PRK15412 thiol:disulfide inter 72.3 26 0.00056 27.3 7.7 29 39-67 79-110 (185)
285 PRK11657 dsbG disulfide isomer 72.3 6.3 0.00014 32.7 4.3 36 21-62 116-155 (251)
286 TIGR02738 TrbB type-F conjugat 71.3 22 0.00047 27.4 6.9 37 22-64 50-90 (153)
287 PRK00635 excinuclease ABC subu 70.6 3.6 7.8E-05 43.4 2.9 52 91-143 1574-1642(1809)
288 PF13717 zinc_ribbon_4: zinc-r 70.0 3 6.4E-05 24.4 1.4 31 132-164 3-33 (36)
289 cd03023 DsbA_Com1_like DsbA fa 69.8 9.1 0.0002 27.8 4.3 24 79-102 127-150 (154)
290 KOG2767 Translation initiation 68.9 5.1 0.00011 35.4 3.1 78 70-169 40-131 (400)
291 COG1198 PriA Primosomal protei 68.8 11 0.00023 36.5 5.5 46 120-174 435-482 (730)
292 PF15616 TerY-C: TerY-C metal 68.6 5.5 0.00012 30.3 2.9 40 120-168 77-117 (131)
293 TIGR00424 APS_reduc 5'-adenyly 68.2 17 0.00037 33.2 6.5 57 24-89 373-438 (463)
294 PF13899 Thioredoxin_7: Thiore 67.9 33 0.00072 22.8 6.5 52 25-87 19-79 (82)
295 PF13462 Thioredoxin_4: Thiore 67.4 8.9 0.00019 28.4 3.9 43 19-67 9-59 (162)
296 TIGR00385 dsbE periplasmic pro 66.5 41 0.0009 25.7 7.6 27 39-65 74-103 (173)
297 PF08792 A2L_zn_ribbon: A2L zi 66.1 3.4 7.3E-05 23.9 1.0 8 133-140 5-12 (33)
298 cd02958 UAS UAS family; UAS is 65.6 13 0.00029 26.3 4.4 57 24-88 18-84 (114)
299 COG3340 PepE Peptidase E [Amin 65.2 40 0.00086 27.9 7.4 85 24-118 32-119 (224)
300 TIGR02739 TraF type-F conjugat 64.9 17 0.00036 30.7 5.4 59 22-87 150-219 (256)
301 PRK10954 periplasmic protein d 64.9 9.6 0.00021 30.4 3.8 19 79-97 165-183 (207)
302 PF01323 DSBA: DSBA-like thior 64.8 4.1 8.8E-05 31.3 1.6 57 44-101 124-188 (193)
303 PRK00349 uvrA excinuclease ABC 64.7 5.7 0.00012 39.4 2.9 63 82-144 684-774 (943)
304 TIGR01130 ER_PDI_fam protein d 64.4 25 0.00054 30.6 6.7 56 25-91 21-87 (462)
305 TIGR02098 MJ0042_CXXC MJ0042 f 64.2 4.8 0.0001 23.3 1.5 32 132-165 3-34 (38)
306 PTZ00102 disulphide isomerase; 64.0 25 0.00055 31.1 6.7 56 24-90 51-117 (477)
307 PRK03147 thiol-disulfide oxido 63.9 39 0.00085 25.3 7.0 28 39-66 72-106 (173)
308 PF09297 zf-NADH-PPase: NADH p 63.5 4 8.7E-05 23.0 1.0 24 134-164 6-29 (32)
309 PF04216 FdhE: Protein involve 63.4 4.7 0.0001 34.1 1.9 34 121-165 173-220 (290)
310 COG0041 PurE Phosphoribosylcar 63.3 28 0.00061 27.4 5.9 62 39-100 14-101 (162)
311 cd03019 DsbA_DsbA DsbA family, 62.8 4.5 9.7E-05 30.6 1.5 20 79-98 141-160 (178)
312 TIGR02661 MauD methylamine deh 62.8 69 0.0015 25.0 8.4 24 39-62 85-112 (189)
313 PLN02309 5'-adenylylsulfate re 62.2 19 0.00041 32.9 5.6 56 22-87 365-428 (457)
314 smart00778 Prim_Zn_Ribbon Zinc 62.0 6 0.00013 23.5 1.6 30 131-164 3-33 (37)
315 cd03023 DsbA_Com1_like DsbA fa 61.5 11 0.00025 27.3 3.5 38 20-63 3-45 (154)
316 cd03146 GAT1_Peptidase_E Type 61.4 50 0.0011 26.4 7.5 94 7-114 16-110 (212)
317 PF14451 Ub-Mut7C: Mut7-C ubiq 60.3 7 0.00015 27.1 2.0 22 41-62 30-51 (81)
318 PF09413 DUF2007: Domain of un 60.0 12 0.00025 24.2 3.0 52 26-89 1-52 (67)
319 PF02114 Phosducin: Phosducin; 60.0 40 0.00087 28.4 6.9 75 38-118 156-241 (265)
320 PF04134 DUF393: Protein of un 58.9 20 0.00043 25.4 4.3 66 39-104 6-76 (114)
321 PF03575 Peptidase_S51: Peptid 58.3 20 0.00044 27.1 4.4 60 44-113 3-64 (154)
322 PRK13703 conjugal pilus assemb 58.1 28 0.00061 29.2 5.5 59 22-87 143-212 (248)
323 PF07092 DUF1356: Protein of u 58.0 5.7 0.00012 33.2 1.4 29 120-148 27-55 (238)
324 PHA00626 hypothetical protein 57.9 7.7 0.00017 25.3 1.7 17 123-139 3-19 (59)
325 COG3634 AhpF Alkyl hydroperoxi 56.9 32 0.00069 31.0 5.8 63 22-95 116-183 (520)
326 cd03011 TlpA_like_ScsD_MtbDsbE 56.4 10 0.00022 26.9 2.3 14 39-52 31-44 (123)
327 PF00731 AIRC: AIR carboxylase 55.4 22 0.00047 27.6 4.1 38 25-66 2-39 (150)
328 PF08271 TF_Zn_Ribbon: TFIIB z 55.1 11 0.00024 22.5 2.0 24 133-162 2-25 (43)
329 KOG4022 Dihydropteridine reduc 54.2 88 0.0019 25.3 7.4 79 22-108 2-100 (236)
330 PF06110 DUF953: Eukaryotic pr 53.0 59 0.0013 24.1 6.0 65 22-87 18-95 (119)
331 cd03019 DsbA_DsbA DsbA family, 52.9 22 0.00048 26.7 3.9 37 21-63 14-56 (178)
332 PF04566 RNA_pol_Rpb2_4: RNA p 52.7 14 0.00029 24.4 2.3 18 85-102 1-18 (63)
333 PF13905 Thioredoxin_8: Thiore 52.4 38 0.00082 22.7 4.7 27 39-65 12-46 (95)
334 PRK14714 DNA polymerase II lar 52.4 11 0.00025 38.3 2.7 17 44-60 535-551 (1337)
335 TIGR01130 ER_PDI_fam protein d 52.2 33 0.00072 29.8 5.4 53 22-87 364-425 (462)
336 COG5429 Uncharacterized secret 51.7 21 0.00046 30.0 3.7 71 15-91 34-123 (261)
337 smart00659 RPOLCX RNA polymera 51.0 10 0.00022 23.3 1.3 12 156-167 19-30 (44)
338 PTZ00102 disulphide isomerase; 51.0 33 0.00072 30.3 5.2 54 23-87 376-437 (477)
339 cd03008 TryX_like_RdCVF Trypar 49.7 82 0.0018 24.0 6.5 38 25-67 27-78 (146)
340 PF12760 Zn_Tnp_IS1595: Transp 49.6 16 0.00034 22.3 2.1 24 134-163 21-44 (46)
341 PRK00564 hypA hydrogenase nick 49.3 16 0.00035 26.9 2.5 24 120-143 71-100 (117)
342 PF11287 DUF3088: Protein of u 49.2 27 0.00059 25.9 3.6 52 35-89 19-76 (112)
343 TIGR03439 methyl_EasF probable 48.9 44 0.00095 29.0 5.5 58 39-100 84-146 (319)
344 cd03024 DsbA_FrnE DsbA family, 48.5 57 0.0012 25.1 5.7 22 79-100 173-195 (201)
345 PRK04023 DNA polymerase II lar 47.9 21 0.00045 35.8 3.5 44 119-174 625-670 (1121)
346 cd02967 mauD Methylamine utili 47.4 91 0.002 21.4 6.9 46 39-86 32-83 (114)
347 cd02970 PRX_like2 Peroxiredoxi 46.1 1.1E+02 0.0024 21.9 7.3 45 39-86 35-86 (149)
348 PF01096 TFIIS_C: Transcriptio 46.0 12 0.00027 22.1 1.2 33 132-164 1-36 (39)
349 PLN02234 1-deoxy-D-xylulose-5- 45.5 63 0.0014 30.8 6.3 77 25-111 546-628 (641)
350 COG1107 Archaea-specific RecJ- 45.5 19 0.0004 34.2 2.7 45 120-167 53-106 (715)
351 TIGR03655 anti_R_Lar restricti 45.0 23 0.00051 22.1 2.4 34 132-166 2-36 (53)
352 PF08534 Redoxin: Redoxin; In 43.1 1.3E+02 0.0027 21.8 7.0 36 39-74 40-82 (146)
353 PRK00635 excinuclease ABC subu 43.1 22 0.00048 37.8 3.1 52 91-143 687-752 (1809)
354 COG1107 Archaea-specific RecJ- 42.9 13 0.00028 35.2 1.3 17 129-145 51-67 (715)
355 cd03145 GAT1_cyanophycinase Ty 42.9 1.7E+02 0.0038 23.4 7.9 63 8-74 15-83 (217)
356 PRK11509 hydrogenase-1 operon 42.4 1.5E+02 0.0032 22.4 10.8 66 25-98 36-110 (132)
357 PRK03564 formate dehydrogenase 41.3 22 0.00047 30.9 2.4 13 128-140 209-221 (309)
358 PF13408 Zn_ribbon_recom: Reco 41.1 42 0.00092 20.6 3.2 38 129-171 3-40 (58)
359 COG2260 Predicted Zn-ribbon RN 41.1 15 0.00032 24.2 1.0 19 156-174 5-24 (59)
360 TIGR02159 PA_CoA_Oxy4 phenylac 41.1 29 0.00062 26.7 2.8 31 132-164 106-138 (146)
361 PF08273 Prim_Zn_Ribbon: Zinc- 40.9 18 0.00038 21.8 1.3 30 130-163 2-33 (40)
362 smart00440 ZnF_C2C2 C2C2 Zinc 40.9 27 0.00058 20.8 2.1 32 133-164 2-36 (40)
363 PF13905 Thioredoxin_8: Thiore 40.8 1.1E+02 0.0023 20.4 7.5 66 11-87 23-88 (95)
364 KOG2813 Predicted molecular ch 40.3 21 0.00045 31.4 2.1 11 156-166 256-266 (406)
365 TIGR03826 YvyF flagellar opero 40.1 26 0.00057 26.8 2.4 42 95-140 60-103 (137)
366 COG2143 Thioredoxin-related pr 39.9 53 0.0011 26.1 4.1 64 19-89 39-124 (182)
367 PF05180 zf-DNL: DNL zinc fing 39.5 4.1 8.8E-05 27.4 -1.8 35 133-168 6-41 (66)
368 COG1571 Predicted DNA-binding 39.5 14 0.00031 33.3 1.0 131 17-164 205-375 (421)
369 PF15643 Tox-PL-2: Papain fold 39.4 44 0.00096 24.3 3.3 51 39-93 20-73 (100)
370 PRK00398 rpoP DNA-directed RNA 39.4 16 0.00035 22.1 1.0 27 132-165 4-30 (46)
371 PF00578 AhpC-TSA: AhpC/TSA fa 39.2 1.3E+02 0.0028 20.8 6.1 57 24-87 26-89 (124)
372 KOG3171 Conserved phosducin-li 39.2 22 0.00048 29.7 2.0 40 79-118 209-254 (273)
373 PF10571 UPF0547: Uncharacteri 38.9 22 0.00047 19.3 1.3 6 157-162 15-20 (26)
374 KOG3217 Protein tyrosine phosp 38.8 33 0.00071 26.8 2.8 77 25-101 39-143 (159)
375 KOG2324 Prolyl-tRNA synthetase 38.7 24 0.00053 31.6 2.3 34 131-169 227-260 (457)
376 TIGR01162 purE phosphoribosyla 38.6 89 0.0019 24.4 5.2 27 39-65 10-36 (156)
377 cd01480 vWA_collagen_alpha_1-V 38.4 1.6E+02 0.0034 22.7 6.8 68 20-90 107-184 (186)
378 TIGR01562 FdhE formate dehydro 37.5 26 0.00057 30.3 2.3 12 129-140 208-219 (305)
379 PRK00420 hypothetical protein; 37.2 20 0.00044 26.5 1.4 10 156-165 40-49 (112)
380 PF07449 HyaE: Hydrogenase-1 e 36.8 1.7E+02 0.0036 21.4 8.5 74 23-102 26-105 (107)
381 PF09822 ABC_transp_aux: ABC-t 36.6 1.1E+02 0.0025 25.0 6.0 52 24-77 27-85 (271)
382 COG5039 Exopolysaccharide bios 36.5 99 0.0022 27.1 5.6 80 13-95 19-101 (339)
383 PF14803 Nudix_N_2: Nudix N-te 36.5 16 0.00035 21.2 0.6 27 134-164 3-30 (34)
384 PF04236 Transp_Tc5_C: Tc5 tra 36.4 19 0.00041 23.9 1.0 18 156-173 27-46 (63)
385 TIGR03143 AhpF_homolog putativ 35.5 1E+02 0.0022 28.4 6.0 52 25-87 369-425 (555)
386 PRK12495 hypothetical protein; 35.5 46 0.001 27.6 3.3 28 103-131 26-53 (226)
387 COG3011 Predicted thiol-disulf 35.4 1.4E+02 0.0029 22.9 5.7 67 23-98 8-79 (137)
388 TIGR02069 cyanophycinase cyano 35.3 2.6E+02 0.0056 23.1 8.6 52 8-63 14-66 (250)
389 PF01323 DSBA: DSBA-like thior 35.1 71 0.0015 24.2 4.3 37 25-67 1-42 (193)
390 PF04438 zf-HIT: HIT zinc fing 34.9 14 0.0003 20.8 0.1 16 158-173 4-19 (30)
391 TIGR01562 FdhE formate dehydro 34.8 28 0.00061 30.1 2.1 42 133-174 186-231 (305)
392 PRK09437 bcp thioredoxin-depen 34.8 1.8E+02 0.004 21.3 6.7 44 39-85 42-92 (154)
393 cd03129 GAT1_Peptidase_E_like 34.6 2.3E+02 0.005 22.3 8.9 95 7-115 14-112 (210)
394 PF14353 CpXC: CpXC protein 34.5 29 0.00064 25.4 1.9 46 39-90 3-60 (128)
395 PF13913 zf-C2HC_2: zinc-finge 34.4 20 0.00044 19.1 0.7 8 167-174 2-9 (25)
396 PF03811 Zn_Tnp_IS1: InsA N-te 34.2 52 0.0011 19.3 2.5 31 131-162 5-35 (36)
397 PRK05096 guanosine 5'-monophos 34.0 1.4E+02 0.0031 26.3 6.3 86 11-105 84-172 (346)
398 PRK03681 hypA hydrogenase nick 33.9 42 0.00092 24.5 2.6 21 120-140 70-96 (114)
399 PF09788 Tmemb_55A: Transmembr 33.7 30 0.00065 29.2 2.0 36 127-167 61-96 (256)
400 PF09369 DUF1998: Domain of un 33.6 8.9 0.00019 26.1 -1.0 38 80-117 33-70 (84)
401 PLN02790 transketolase 33.5 1.3E+02 0.0028 28.6 6.4 68 24-97 541-612 (654)
402 KOG3425 Uncharacterized conser 33.4 88 0.0019 23.7 4.2 61 7-67 8-78 (128)
403 KOG3192 Mitochondrial J-type c 33.4 47 0.001 26.2 2.9 34 43-76 72-105 (168)
404 PRK14892 putative transcriptio 33.3 22 0.00047 25.7 1.0 8 131-138 21-28 (99)
405 PF10058 DUF2296: Predicted in 33.1 30 0.00065 22.1 1.5 32 130-164 21-52 (54)
406 KOG0340 ATP-dependent RNA heli 32.7 80 0.0017 28.4 4.5 41 10-61 245-285 (442)
407 PF10122 Mu-like_Com: Mu-like 32.6 17 0.00037 23.2 0.3 8 156-163 24-31 (51)
408 PF13364 BetaGal_dom4_5: Beta- 32.4 37 0.00081 24.5 2.1 18 79-96 61-78 (111)
409 KOG4700 Uncharacterized homolo 32.4 75 0.0016 25.7 3.9 36 67-103 100-136 (207)
410 cd00079 HELICc Helicase superf 31.8 1.7E+02 0.0037 20.1 7.5 48 22-76 27-74 (131)
411 PTZ00056 glutathione peroxidas 31.8 1.5E+02 0.0033 23.4 5.8 24 39-62 50-80 (199)
412 smart00594 UAS UAS domain. 31.7 1.1E+02 0.0025 21.9 4.7 55 25-87 29-92 (122)
413 PF07295 DUF1451: Protein of u 31.6 44 0.00096 25.7 2.5 35 128-169 109-143 (146)
414 PF09633 DUF2023: Protein of u 31.4 1.5E+02 0.0033 21.5 5.1 45 24-75 15-67 (101)
415 PF04056 Ssl1: Ssl1-like; Int 31.2 2.2E+02 0.0048 22.9 6.6 58 17-78 95-154 (193)
416 cd02966 TlpA_like_family TlpA- 30.8 1.6E+02 0.0034 19.3 7.2 46 24-75 21-74 (116)
417 PRK05978 hypothetical protein; 30.7 27 0.00058 27.1 1.2 11 155-165 51-61 (148)
418 COG3947 Response regulator con 30.6 1.5E+02 0.0032 26.1 5.7 50 38-90 28-81 (361)
419 PF01807 zf-CHC2: CHC2 zinc fi 30.5 37 0.0008 23.9 1.8 60 98-167 6-65 (97)
420 COG1651 DsbG Protein-disulfide 30.5 71 0.0015 25.6 3.7 23 79-101 213-235 (244)
421 cd03082 TRX_Fd_NuoE_W_FDH_beta 30.4 53 0.0011 21.9 2.5 17 79-95 44-60 (72)
422 PF14599 zinc_ribbon_6: Zinc-r 30.2 42 0.00091 22.1 1.9 29 129-164 28-56 (61)
423 KOG0908 Thioredoxin-like prote 30.0 2.4E+02 0.0051 24.2 6.7 69 13-92 11-87 (288)
424 PF14424 Toxin-deaminase: The 29.4 1.2E+02 0.0027 22.8 4.6 40 8-52 78-120 (133)
425 TIGR00108 eRF peptide chain re 29.3 26 0.00055 31.4 1.0 54 88-141 290-356 (409)
426 COG4332 Uncharacterized protei 29.3 32 0.00069 27.8 1.4 50 112-165 9-58 (203)
427 PRK14018 trifunctional thiored 29.1 2E+02 0.0042 26.8 6.7 14 39-52 67-80 (521)
428 PRK05282 (alpha)-aspartyl dipe 28.9 2.3E+02 0.0051 23.3 6.5 24 41-64 48-71 (233)
429 PF08646 Rep_fac-A_C: Replicat 28.8 33 0.00072 25.7 1.4 29 129-165 16-46 (146)
430 PLN02948 phosphoribosylaminoim 28.8 2.1E+02 0.0045 26.8 6.9 45 17-65 404-448 (577)
431 COG5427 Uncharacterized membra 28.6 63 0.0014 29.9 3.3 26 27-61 621-646 (684)
432 TIGR03865 PQQ_CXXCW PQQ-depend 28.5 1.4E+02 0.003 22.9 4.9 32 19-56 112-143 (162)
433 cd03008 TryX_like_RdCVF Trypar 28.0 2.7E+02 0.0059 21.1 7.6 59 25-92 65-126 (146)
434 COG0551 TopA Zn-finger domain 28.0 71 0.0015 23.8 3.1 8 132-139 61-68 (140)
435 PRK04023 DNA polymerase II lar 27.5 41 0.0009 33.8 2.1 17 44-60 505-521 (1121)
436 PF01753 zf-MYND: MYND finger; 27.5 29 0.00062 19.9 0.7 13 161-173 3-15 (37)
437 PF14901 Jiv90: Cleavage induc 27.1 32 0.00069 24.7 0.9 33 129-164 3-35 (94)
438 PRK12775 putative trifunctiona 27.0 58 0.0013 32.6 3.1 29 79-107 717-745 (1006)
439 PRK00432 30S ribosomal protein 26.8 43 0.00093 21.0 1.4 23 133-163 22-44 (50)
440 PF06677 Auto_anti-p27: Sjogre 26.7 42 0.00091 20.3 1.3 6 157-162 35-40 (41)
441 cd03017 PRX_BCP Peroxiredoxin 26.7 2.4E+02 0.0051 20.0 7.0 44 39-85 35-85 (140)
442 cd02978 KaiB_like KaiB-like fa 26.7 1.1E+02 0.0024 20.8 3.5 44 26-71 4-50 (72)
443 PRK14890 putative Zn-ribbon RN 26.6 30 0.00064 22.8 0.6 18 156-173 25-42 (59)
444 PRK03564 formate dehydrogenase 26.5 52 0.0011 28.5 2.3 19 155-173 211-232 (309)
445 PHA02558 uvsW UvsW helicase; P 26.4 4.2E+02 0.0092 24.0 8.3 86 24-117 345-436 (501)
446 cd03018 PRX_AhpE_like Peroxire 26.2 2.5E+02 0.0054 20.2 5.8 43 39-84 40-89 (149)
447 COG0526 TrxA Thiol-disulfide i 26.0 1.6E+02 0.0035 18.8 4.4 49 39-90 43-100 (127)
448 PHA03075 glutaredoxin-like pro 25.7 94 0.002 23.3 3.2 30 23-58 2-31 (123)
449 cd01444 GlpE_ST GlpE sulfurtra 25.7 1.3E+02 0.0029 19.9 3.9 28 22-56 55-82 (96)
450 PRK00762 hypA hydrogenase nick 25.6 59 0.0013 24.1 2.2 8 157-164 93-100 (124)
451 PRK11032 hypothetical protein; 25.3 65 0.0014 25.3 2.5 34 128-168 121-154 (160)
452 cd00340 GSH_Peroxidase Glutath 25.1 1.9E+02 0.0042 21.3 5.1 12 39-51 33-44 (152)
453 COG0045 SucC Succinyl-CoA synt 25.0 86 0.0019 28.1 3.4 53 44-96 6-61 (387)
454 PRK12380 hydrogenase nickel in 24.8 51 0.0011 24.0 1.7 22 120-141 70-96 (113)
455 PF06943 zf-LSD1: LSD1 zinc fi 24.7 73 0.0016 17.2 1.9 9 155-163 15-23 (25)
456 PF03833 PolC_DP2: DNA polymer 24.3 25 0.00055 34.5 0.0 43 119-173 654-698 (900)
457 COG1905 NuoE NADH:ubiquinone o 24.3 43 0.00093 26.3 1.3 82 20-116 74-158 (160)
458 PRK15348 type III secretion sy 24.2 58 0.0013 27.3 2.1 88 24-118 19-123 (249)
459 PF09723 Zn-ribbon_8: Zinc rib 24.1 93 0.002 18.5 2.5 12 156-167 26-37 (42)
460 PRK04155 chaperone protein Hch 24.0 2.5E+02 0.0055 23.9 6.1 104 21-140 47-190 (287)
461 PRK10954 periplasmic protein d 24.0 95 0.0021 24.6 3.3 35 22-62 37-80 (207)
462 PF04900 Fcf1: Fcf1; InterPro 23.9 82 0.0018 22.0 2.6 28 59-90 67-94 (101)
463 PLN02225 1-deoxy-D-xylulose-5- 23.9 2E+02 0.0043 27.9 5.9 63 25-97 569-635 (701)
464 PLN02399 phospholipid hydroper 23.9 2.8E+02 0.006 22.9 6.1 33 24-62 101-140 (236)
465 PF11399 DUF3192: Protein of u 23.7 64 0.0014 23.5 2.0 18 79-96 79-96 (102)
466 PF09419 PGP_phosphatase: Mito 23.6 3.3E+02 0.0072 21.3 6.2 79 10-91 64-146 (168)
467 PRK03659 glutathione-regulated 23.5 3.9E+02 0.0085 25.0 7.7 42 23-74 400-441 (601)
468 PF03227 GILT: Gamma interfero 23.5 69 0.0015 22.9 2.2 15 25-45 2-16 (108)
469 PF08442 ATP-grasp_2: ATP-gras 23.4 30 0.00064 28.0 0.2 46 45-90 6-53 (202)
470 PF08308 PEGA: PEGA domain; I 23.2 64 0.0014 20.8 1.8 10 84-93 14-23 (71)
471 PF02780 Transketolase_C: Tran 23.2 1.3E+02 0.0028 21.5 3.7 43 24-71 10-56 (124)
472 PTZ00256 glutathione peroxidas 23.1 3.2E+02 0.0068 21.1 6.1 45 39-85 52-111 (183)
473 cd04911 ACT_AKiii-YclM-BS_1 AC 22.9 1E+02 0.0022 21.1 2.8 22 39-60 14-35 (76)
474 COG0178 UvrA Excinuclease ATPa 22.8 1.5E+02 0.0032 29.5 4.8 100 21-131 297-409 (935)
475 TIGR01689 EcbF-BcbF capsule bi 22.8 1.3E+02 0.0029 22.3 3.7 18 45-62 68-85 (126)
476 PF13453 zf-TFIIB: Transcripti 22.7 50 0.0011 19.4 1.1 25 134-163 2-26 (41)
477 PF03604 DNA_RNApol_7kD: DNA d 22.5 68 0.0015 18.3 1.6 10 156-165 17-26 (32)
478 KOG3460 Small nuclear ribonucl 22.3 1.8E+02 0.004 20.4 4.0 45 44-92 37-81 (91)
479 TIGR00757 RNaseEG ribonuclease 22.3 1.2E+02 0.0026 27.3 3.9 16 41-56 311-326 (414)
480 PRK05899 transketolase; Review 22.2 2.8E+02 0.0061 26.0 6.5 83 24-116 511-611 (624)
481 PF00098 zf-CCHC: Zinc knuckle 22.2 56 0.0012 16.0 1.0 11 158-168 2-12 (18)
482 KOG0712 Molecular chaperone (D 22.1 38 0.00082 29.8 0.7 11 133-143 172-182 (337)
483 COG4566 TtrR Response regulato 22.1 3.1E+02 0.0068 22.4 5.8 44 57-105 51-98 (202)
484 PLN02412 probable glutathione 22.0 3.6E+02 0.0078 20.4 6.6 46 39-86 40-100 (167)
485 cd04333 ProX_deacylase This CD 22.0 1.5E+02 0.0033 22.0 3.9 34 44-77 2-35 (148)
486 TIGR01305 GMP_reduct_1 guanosi 21.9 3.6E+02 0.0079 23.8 6.7 86 10-105 82-171 (343)
487 PF13156 Mrr_cat_2: Restrictio 21.9 1.3E+02 0.0029 22.6 3.5 35 20-62 73-107 (129)
488 PTZ00494 tuzin-like protein; P 21.7 1.1E+02 0.0025 28.6 3.6 59 22-89 393-451 (664)
489 PF02033 RBFA: Ribosome-bindin 21.5 1.3E+02 0.0027 21.2 3.2 52 22-89 39-91 (104)
490 COG3809 Uncharacterized protei 21.4 65 0.0014 22.5 1.6 27 132-163 2-28 (88)
491 TIGR00595 priA primosomal prot 21.3 79 0.0017 29.0 2.6 35 120-166 222-263 (505)
492 PF01412 ArfGap: Putative GTPa 21.3 10 0.00023 27.7 -2.6 26 120-145 13-47 (116)
493 TIGR03676 aRF1/eRF1 peptide ch 21.1 57 0.0012 29.2 1.6 55 88-142 286-353 (403)
494 KOG0706 Predicted GTPase-activ 21.0 45 0.00098 30.4 0.9 39 106-144 9-56 (454)
495 PTZ00110 helicase; Provisional 21.0 6E+02 0.013 23.4 8.3 89 22-118 376-469 (545)
496 KOG4218 Nuclear hormone recept 21.0 38 0.00083 30.1 0.5 28 120-147 15-48 (475)
497 PRK00521 rbfA ribosome-binding 20.9 2.9E+02 0.0063 20.1 5.2 51 24-90 47-98 (120)
498 TIGR01616 nitro_assoc nitrogen 20.9 1.7E+02 0.0036 21.7 3.9 18 81-98 90-107 (126)
499 COG2835 Uncharacterized conser 20.8 90 0.0019 20.6 2.1 28 131-165 8-35 (60)
500 PRK05625 5-amino-6-(5-phosphor 20.7 2.1E+02 0.0045 22.7 4.7 70 24-111 94-166 (217)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-56 Score=367.35 Aligned_cols=162 Identities=59% Similarity=1.088 Sum_probs=151.4
Q ss_pred chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEE
Q 047313 9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRL 85 (174)
Q Consensus 9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~v 85 (174)
+++.+|+++|||++++.||||+|+|+|||+|+.+|..||+||++++|.|+|+||+||..+++||++++|. ..++|+|
T Consensus 116 ~~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrV 195 (281)
T KOG2824|consen 116 KLLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRV 195 (281)
T ss_pred cchhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeE
Confidence 4677999999999999999999999999999999999999999999999999999999999999999986 6789999
Q ss_pred EECCEEEeccchhhhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 86 FIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 86 FI~G~~IGG~del~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
||+|+||||++++++|||.|+|.++|+++| ......|.+|||.||+||+.||||+|++...+. +..++||++||||
T Consensus 196 FV~GryIGgaeeV~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~---~~~~~rC~~CNEN 271 (281)
T KOG2824|consen 196 FVKGRYIGGAEEVVRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEED---DGGVLRCLECNEN 271 (281)
T ss_pred EEccEEeccHHHhhhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccC---CCcEEECcccCCC
Confidence 999999999999999999999999999999 455689999999999999999999999984221 1259999999999
Q ss_pred ccccCCCCC
Q 047313 166 GLVKCPFCS 174 (174)
Q Consensus 166 Gl~~C~~C~ 174 (174)
||||||.|+
T Consensus 272 GLvrCp~Cs 280 (281)
T KOG2824|consen 272 GLVRCPVCS 280 (281)
T ss_pred CceeCCccC
Confidence 999999996
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=6.5e-54 Score=331.07 Aligned_cols=144 Identities=56% Similarity=1.057 Sum_probs=135.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEEEECCEEEeccchhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~vFI~G~~IGG~del~~l 101 (174)
+||||||||++||++||+|.+||++|++++|+|+++||++|+++++||+++++. +.++|||||+|+||||+|++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999873 58999999999999999999999
Q ss_pred hhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccccC
Q 047313 102 HEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKC 170 (174)
Q Consensus 102 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~C 170 (174)
|++|+|.++|+.++...+...|++|||.|||||+.||||+|++.++.+. ...++||++|||||||||
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~--~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATA--AGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcc--cccEEECCCCCccccccC
Confidence 9999999999999888888899999999999999999999999988542 125899999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.93 E-value=6.6e-26 Score=162.41 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=84.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC---CCCCCcEEEECCEEEeccchhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS---GRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g---~~~~~P~vFI~G~~IGG~del~~l 101 (174)
.|+||+||++|+|++...|++++++|++++|+|+++||++|++.+++|+++++ +..++|||||+|+||||+|++.+|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999986 368999999999999999999999
Q ss_pred hhcCchhHHhh
Q 047313 102 HEQGKLKKLLE 112 (174)
Q Consensus 102 ~e~G~L~~~L~ 112 (174)
+++|+|.++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999985
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.91 E-value=7.9e-24 Score=152.70 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=82.3
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
.++++||||+++. ..++.||+|.+|+++|++++|+|+++||..+++.+++|++++| +.++|+|||||++|||+|++++
T Consensus 9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg-~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN-WPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeChHHHHH
Confidence 6789999998853 2345799999999999999999999999999999999999998 8999999999999999999999
Q ss_pred hhhcCchhHHh
Q 047313 101 LHEQGKLKKLL 111 (174)
Q Consensus 101 l~e~G~L~~~L 111 (174)
|+++|+|.++|
T Consensus 87 l~~~g~L~~~l 97 (97)
T TIGR00365 87 MYQSGELQTLL 97 (97)
T ss_pred HHHCcChHHhC
Confidence 99999999876
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.91 E-value=6.9e-24 Score=153.55 Aligned_cols=89 Identities=21% Similarity=0.375 Sum_probs=81.1
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME---FRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~---~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
+.+++|+||+++ .||+|.+++++|++++++|+++||..++. .++++.+++| +.++|+|||+|++|||+++
T Consensus 5 i~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi~g~~iGG~dd 77 (99)
T TIGR02189 5 VSEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC-SPAVPAVFVGGKLVGGLEN 77 (99)
T ss_pred hccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEECCEEEcCHHH
Confidence 567899999998 79999999999999999999999988755 5566777787 9999999999999999999
Q ss_pred hhhhhhcCchhHHhhcCCC
Q 047313 98 VVGLHEQGKLKKLLEGIPR 116 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~~~~ 116 (174)
+++|+++|+|.++|+..++
T Consensus 78 l~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 78 VMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHcCCHHHHHHHhCc
Confidence 9999999999999988654
No 6
>PRK10824 glutaredoxin-4; Provisional
Probab=99.91 E-value=5.7e-24 Score=158.09 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=87.3
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
.+.+++||||+++. -..+.||+|.+|+++|++++++|.++||..+++.+++|++++| ++|+|||||||++|||+|+++
T Consensus 11 ~I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg-~~TVPQIFI~G~~IGG~ddl~ 88 (115)
T PRK10824 11 QIAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGELVGGCDIVI 88 (115)
T ss_pred HHhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHHH
Confidence 36889999999852 1235799999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhhhcCchhHHhhcCCCC
Q 047313 100 GLHEQGKLKKLLEGIPRN 117 (174)
Q Consensus 100 ~l~e~G~L~~~L~~~~~~ 117 (174)
+|+++|+|.++|+..++.
T Consensus 89 ~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 89 EMYQRGELQQLIKETAAK 106 (115)
T ss_pred HHHHCCCHHHHHHHHHhh
Confidence 999999999999876653
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.90 E-value=2.2e-23 Score=153.33 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCC---cEEEEECCC---CHHHHHHHHHhcCCCCCCcEEEECCEEEec
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKV---TFYERDVSL---HMEFRDELWSSLSGRVIPPRLFIKGRYIGG 94 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v---~~~e~Dv~~---~~~~~~el~~~~g~~~~~P~vFI~G~~IGG 94 (174)
+.+++|+||+++ +||+|.+|+++|++++| +|+++||.. +.+.+++|.+++| +.++|+|||+|++|||
T Consensus 10 i~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG-~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 10 LANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG-GRTVPRIFFGKTSIGG 82 (108)
T ss_pred hccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC-CCCcCEEEECCEEEeC
Confidence 567899999998 69999999999999999 799999986 6789999999998 8999999999999999
Q ss_pred cchhhhhhhcCchhHHhhcCCCCC
Q 047313 95 ADEVVGLHEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 95 ~del~~l~e~G~L~~~L~~~~~~~ 118 (174)
++++++|+++|+|.++|+.+++..
T Consensus 83 ~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred hHHHHHHHHcCCHHHHHHHccccc
Confidence 999999999999999999887653
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.87 E-value=4.5e-22 Score=141.35 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=78.5
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
+.+++||||+++. ...+.||+|.+|+++|++++++|+++||..+++++++|.+++| ..++|+|||||++|||++++++
T Consensus 5 i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 5 IKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred hccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeCHHHHHH
Confidence 4678999998852 1234799999999999999999999999999999999999998 8999999999999999999999
Q ss_pred hhhcCchh
Q 047313 101 LHEQGKLK 108 (174)
Q Consensus 101 l~e~G~L~ 108 (174)
||++|+|+
T Consensus 83 l~~~g~L~ 90 (90)
T cd03028 83 MHESGELQ 90 (90)
T ss_pred HHHcCCcC
Confidence 99999985
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.87 E-value=7.4e-22 Score=135.91 Aligned_cols=79 Identities=35% Similarity=0.513 Sum_probs=76.0
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQG 105 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~G 105 (174)
|+||+++ +||+|.+|+++|++++++|+++||..+++.++++.+++| ..++|+|||+|++|||++++.+|+++|
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g-~~~vP~i~i~g~~igg~~~~~~~~~~g 73 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG-RRTVPQIFIGDVHVGGCDDLYALDREG 73 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC-CCCcCEEEECCEEEcChHHHHHHHHcC
Confidence 6899997 799999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred chhHHh
Q 047313 106 KLKKLL 111 (174)
Q Consensus 106 ~L~~~L 111 (174)
+|+++|
T Consensus 74 ~l~~~l 79 (79)
T TIGR02181 74 KLDPLL 79 (79)
T ss_pred ChhhhC
Confidence 999876
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.86 E-value=2.2e-21 Score=135.32 Aligned_cols=81 Identities=32% Similarity=0.501 Sum_probs=77.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~ 104 (174)
+|+||+++ +|++|.+|+.+|+.++++|+++||..+++.++++.+++| ..++|+||++|++|||++++.+|+++
T Consensus 3 ~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g-~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG-RTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 79999997 799999999999999999999999999988999999988 89999999999999999999999999
Q ss_pred CchhHHhh
Q 047313 105 GKLKKLLE 112 (174)
Q Consensus 105 G~L~~~L~ 112 (174)
|+|.++|+
T Consensus 76 g~l~~~~~ 83 (83)
T PRK10638 76 GGLDPLLK 83 (83)
T ss_pred CCHHHHhC
Confidence 99999884
No 11
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.3e-20 Score=136.42 Aligned_cols=91 Identities=25% Similarity=0.426 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGA 95 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~ 95 (174)
....+++||||+++ .|++|.+++.+|...++.+..++++.+ .++++.|.+++| ++++|+|||+|++|||.
T Consensus 9 ~~i~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg-~~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 9 KMISENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG-QRTVPNVFIGGKFIGGA 81 (104)
T ss_pred HHhhcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC-CCCCCEEEECCEEEcCH
Confidence 34688999999998 799999999999999998776666543 578888888888 99999999999999999
Q ss_pred chhhhhhhcCchhHHhhcCCC
Q 047313 96 DEVVGLHEQGKLKKLLEGIPR 116 (174)
Q Consensus 96 del~~l~e~G~L~~~L~~~~~ 116 (174)
+++++||.+|+|.++|+.+.+
T Consensus 82 ~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 82 SDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHHHcCCHHHHHHHhhc
Confidence 999999999999999988665
No 12
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.83 E-value=5.2e-20 Score=124.89 Aligned_cols=75 Identities=31% Similarity=0.483 Sum_probs=69.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~ 104 (174)
+|+||+++ .||+|.+|+++|++++|+|+++||..+++.++++.+..|...++|+|||+|++|||++++++|+++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~ 74 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERK 74 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhC
Confidence 58999997 799999999999999999999999999999999999888334999999999999999999999998
Q ss_pred C
Q 047313 105 G 105 (174)
Q Consensus 105 G 105 (174)
|
T Consensus 75 g 75 (75)
T cd03418 75 G 75 (75)
T ss_pred c
Confidence 7
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.83 E-value=4e-20 Score=125.80 Aligned_cols=73 Identities=23% Similarity=0.501 Sum_probs=69.3
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
++|+||+++ .|++|.+|+++|++++|+|+++||..++..+++|++++| ..++|+|||||++|||++++.+|++
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHhhcC
Confidence 479999998 799999999999999999999999999999999999998 7899999999999999999999875
No 14
>PTZ00062 glutaredoxin; Provisional
Probab=99.83 E-value=3.4e-20 Score=150.20 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del 98 (174)
..+.+++|+||+++.. ..+.|++|.+++.+|++++|+|+++||..|++.+++|++++| ++++|||||||++|||+|++
T Consensus 108 ~li~~~~Vvvf~Kg~~-~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg-~~TvPqVfI~G~~IGG~d~l 185 (204)
T PTZ00062 108 RLIRNHKILLFMKGSK-TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSN-WPTYPQLYVNGELIGGHDII 185 (204)
T ss_pred HHHhcCCEEEEEccCC-CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHH
Confidence 3578899999998521 124799999999999999999999999999999999999998 99999999999999999999
Q ss_pred hhhhhcCchhHHhhc
Q 047313 99 VGLHEQGKLKKLLEG 113 (174)
Q Consensus 99 ~~l~e~G~L~~~L~~ 113 (174)
++|+++|+|.++|..
T Consensus 186 ~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 186 KELYESNSLRKVIPD 200 (204)
T ss_pred HHHHHcCChhhhhhh
Confidence 999999999999864
No 15
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.6e-19 Score=128.04 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFK-VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
..+.+++|+||.+... ..+.|.+..++..+|...| ++|..+||..|+++|+.|++.++ |+|+||+||+|++|||.|-
T Consensus 10 ~~i~~n~VvLFMKGtp-~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~-WPT~PQLyi~GEfvGG~DI 87 (105)
T COG0278 10 KQIKENPVVLFMKGTP-EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN-WPTFPQLYVNGEFVGGCDI 87 (105)
T ss_pred HHhhcCceEEEecCCC-CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC-CCCCceeeECCEEeccHHH
Confidence 3468899999999753 4567999999999999999 89999999999999999999999 9999999999999999999
Q ss_pred hhhhhhcCchhHHhhcC
Q 047313 98 VVGLHEQGKLKKLLEGI 114 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~~ 114 (174)
+.+|+++|+|+++|+..
T Consensus 88 v~Em~q~GELq~~l~~~ 104 (105)
T COG0278 88 VREMYQSGELQTLLKEA 104 (105)
T ss_pred HHHHHHcchHHHHHHhc
Confidence 99999999999999764
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.3e-19 Score=123.38 Aligned_cols=77 Identities=30% Similarity=0.480 Sum_probs=68.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
.|+||+++ +||+|.+++++|+++|+.|+++|+.+++ +.++.+++..| .+++|||||||++|||.+++.+++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g-~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKG-QRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCC-CCCcCEEEECCEEEeCcccHHHHH
Confidence 58999998 7999999999999999999999999887 55555666656 999999999999999999999999
Q ss_pred hcCchh
Q 047313 103 EQGKLK 108 (174)
Q Consensus 103 e~G~L~ 108 (174)
..+.|.
T Consensus 75 ~~~~l~ 80 (80)
T COG0695 75 AKGKLD 80 (80)
T ss_pred hhccCC
Confidence 988763
No 17
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.77 E-value=2.4e-18 Score=118.43 Aligned_cols=79 Identities=27% Similarity=0.522 Sum_probs=71.0
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT--FYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~--~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
|++|+++ .||+|.+++.+|++++++ |+.++|..+ .+.++++.+++| ..++|+|||+|++|||++++.+
T Consensus 1 V~~f~~~------~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g~~igg~~~~~~ 73 (84)
T TIGR02180 1 VVVFSKS------YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG-QRTVPNIFINGKFIGGCSDLLA 73 (84)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHH
Confidence 6899998 699999999999999998 888888653 566777888887 8999999999999999999999
Q ss_pred hhhcCchhHHh
Q 047313 101 LHEQGKLKKLL 111 (174)
Q Consensus 101 l~e~G~L~~~L 111 (174)
|+++|+|.++|
T Consensus 74 ~~~~g~l~~~~ 84 (84)
T TIGR02180 74 LYKSGKLAELL 84 (84)
T ss_pred HHHcCChhhhC
Confidence 99999999876
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.76 E-value=2.8e-18 Score=117.94 Aligned_cols=79 Identities=32% Similarity=0.560 Sum_probs=71.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+|++|+++ .||+|..++.+|++++++|+++++..+ ...++++++++| ..++|+||++|++|||++++.+|
T Consensus 1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~~~P~v~~~g~~igg~~~~~~~ 73 (82)
T cd03419 1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG-QRTVPNVFIGGKFIGGCDDLMAL 73 (82)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHHH
Confidence 58999987 799999999999999999998888655 556778888888 99999999999999999999999
Q ss_pred hhcCchhHH
Q 047313 102 HEQGKLKKL 110 (174)
Q Consensus 102 ~e~G~L~~~ 110 (174)
.++|+|.++
T Consensus 74 ~~~g~l~~~ 82 (82)
T cd03419 74 HKSGKLVKL 82 (82)
T ss_pred HHcCCccCC
Confidence 999999864
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.76 E-value=4.1e-18 Score=115.43 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=63.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
+|+||+++ +||+|.+|+++|++++|+|+++||..+.. .++++.++| ..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g-~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTG-AMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhC-CCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999998 79999999999999999999999988874 567777777 899999999999999999998764
No 20
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.76 E-value=2.5e-18 Score=124.67 Aligned_cols=88 Identities=24% Similarity=0.488 Sum_probs=74.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC--------CCCCCcEEEECCEEEeccc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS--------GRVIPPRLFIKGRYIGGAD 96 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g--------~~~~~P~vFI~G~~IGG~d 96 (174)
.|.||+|+++|.++.-..+.++..||+.++|+|+++||+++++.|+.+++..| +...+||||++++|+|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 38899999999999999999999999999999999999999999999999883 3556689999999999999
Q ss_pred hhhhhhhcCchhHHhh
Q 047313 97 EVVGLHEQGKLKKLLE 112 (174)
Q Consensus 97 el~~l~e~G~L~~~L~ 112 (174)
++.+++|+++|.++|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 21
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.74 E-value=1.4e-17 Score=115.22 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=65.2
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
..+++|+||+++ .|++|.+++++|+++||+|+++||..+... +++.+.+| ..++|+|||||++|||++++.+
T Consensus 5 ~~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g-~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 5 RKPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTG-ATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHC-CCCcCeEEECCEEEcCHHHHHH
Confidence 456899999998 799999999999999999999999887664 56777777 8999999999999999999876
Q ss_pred h
Q 047313 101 L 101 (174)
Q Consensus 101 l 101 (174)
+
T Consensus 77 ~ 77 (79)
T TIGR02190 77 Y 77 (79)
T ss_pred H
Confidence 5
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.74 E-value=2.3e-17 Score=109.01 Aligned_cols=72 Identities=35% Similarity=0.593 Sum_probs=68.1
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
+|+||+++ .||+|.+++.+|++++++|+++|+..+++.+++|.+++| ..++|+||++|++|||++++++|++
T Consensus 1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~-~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG-WPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEecHHHHHHhhC
Confidence 58999998 699999999999999999999999999999999999988 8999999999999999999998874
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.73 E-value=2.4e-17 Score=116.06 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=65.5
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del~ 99 (174)
|+||+++ +||+|.+|+++|+++ ++.|+++||..+...++++.+.+|. ..++|+|||||++|||+++|+
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence 8999998 799999999999998 4679999998777677888888872 279999999999999999999
Q ss_pred hhhhcC
Q 047313 100 GLHEQG 105 (174)
Q Consensus 100 ~l~e~G 105 (174)
++++++
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 998764
No 24
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.72 E-value=2.9e-17 Score=114.84 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=67.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del 98 (174)
+|+||+++ +|++|.+|+++|++ .+++|+++||..+...++++.+.+|. ..++|+|||||++|||++++
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 68999998 79999999999999 89999999999888778889888872 37999999999999999999
Q ss_pred hhhhhc
Q 047313 99 VGLHEQ 104 (174)
Q Consensus 99 ~~l~e~ 104 (174)
.++++.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 998764
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.69 E-value=1.5e-16 Score=104.26 Aligned_cols=60 Identities=28% Similarity=0.458 Sum_probs=57.6
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI 92 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I 92 (174)
|+||+++ +||+|.+++++|++++++|+++||+.+++.+++|++++| ..++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g-~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG-VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS-SSSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC-CCccCEEEECCEEC
Confidence 7899997 899999999999999999999999999999999999997 99999999999987
No 26
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=128.16 Aligned_cols=94 Identities=26% Similarity=0.311 Sum_probs=87.1
Q ss_pred CCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 18 CPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 18 ~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
...+.+++|+||.++.. ..+.|.+.+.+..+|++++|+|...||..|++.|+-+++++. |+|+|||||+|++|||.|-
T Consensus 133 ~~lv~a~~v~lFmKG~p-~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd-WPTfPQlyI~GEFiGGlDI 210 (227)
T KOG0911|consen 133 EKLVKAKPVMLFMKGTP-EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD-WPTFPQLYVKGEFIGGLDI 210 (227)
T ss_pred HHhcccCeEEEEecCCC-CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC-CCCccceeECCEeccCcHH
Confidence 34678899999999853 456799999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhcCchhHHhhc
Q 047313 98 VVGLHEQGKLKKLLEG 113 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~ 113 (174)
+.+|+++|+|...|+.
T Consensus 211 l~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 211 LKEMHEKGELVYTLKE 226 (227)
T ss_pred HHHHhhcccHHHHhhc
Confidence 9999999999999875
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.63 E-value=1.5e-15 Score=134.45 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=73.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--------hcCCCCCCcEEEECCEEEecc
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--------SLSGRVIPPRLFIKGRYIGGA 95 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--------~~g~~~~~P~vFI~G~~IGG~ 95 (174)
.+|+|||++ +||+|.++|++|+++||+|+++||+.++...+.+.+ .+| ..++|||||||++|||+
T Consensus 2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g-~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEH-IRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCC-CCccCeEEECCEEEeCc
Confidence 369999998 799999999999999999999999988765443333 245 88999999999999999
Q ss_pred chhhhhhhcCchhHHhhcCCCCC
Q 047313 96 DEVVGLHEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 96 del~~l~e~G~L~~~L~~~~~~~ 118 (174)
++++. .+|+|.++|++.+--+
T Consensus 75 ~~l~~--~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 75 DNLMA--RAGEVIARVKGSSLTT 95 (410)
T ss_pred hHHHH--HhCCHHHHhcCCcccc
Confidence 99987 8999999999876544
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.55 E-value=2.2e-14 Score=97.31 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=57.9
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE-EEeccch
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR-YIGGADE 97 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~-~IGG~de 97 (174)
|+||+++ +||+|.+++++|++++|+|+++||..++..++++++. | ..++|+|||+|. +|||++.
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g-~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-G-FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-C-CcccCEEEECCCcEEeccCH
Confidence 6899997 8999999999999999999999999999999998864 6 889999999775 9999864
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.53 E-value=6.8e-14 Score=97.72 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=59.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
+|+||+++ +|++|.+++.+|+++||+|+++||..+++..++++. .| ..++|+|+|++..|+|++.
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g-~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QG-FRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC-CCCcCEEEECCEEEecCCH
Confidence 69999997 799999999999999999999999999998888876 45 8999999999999999954
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.31 E-value=2e-11 Score=80.80 Aligned_cols=66 Identities=29% Similarity=0.332 Sum_probs=60.2
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
+|+||+++ .|++|.+++.+|+..+++|.++|+..+++..+++.+.+| ..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~-~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTP------WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG-QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCC------CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC-CCcccEEEECCEEEeeCCH
Confidence 48899998 699999999999999999999999999888888888887 8899999999999988743
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.25 E-value=7.5e-11 Score=77.93 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=60.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
+|++|+++ .|++|.+++.+|+.++++|..+|+..+....+++.++.+ ..++|+|+++|+.|+|++.
T Consensus 1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG-YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC-CcccCEEEECCEEEecCCH
Confidence 48999987 699999999999999999999999988888888988876 8899999999999999865
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.08 E-value=1.3e-09 Score=73.33 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=56.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGAD 96 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~d 96 (174)
+|+||+++ .|++|.+++.+|+.++++|+.+|+..++...+++.++..+..++|+|++ +|+.+....
T Consensus 1 ~v~ly~~~------~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTT------WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECC------CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 58999998 6999999999999999999999999998888888888623889999976 667776554
No 33
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.8e-09 Score=77.69 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=81.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-------CCCCCCcEEEECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-------SGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-------g~~~~~P~vFI~G~~IGG~de 97 (174)
.|.+|++|.++.+..-..-.++..+|+.+.|.|+++||.+....++++.... .|.+..||||-+++|.|+||.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 4789999999988888889999999999999999999999888777765543 237789999999999999999
Q ss_pred hhhhhhcCchhHHhhcCCCC
Q 047313 98 VVGLHEQGKLKKLLEGIPRN 117 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~~~~~ 117 (174)
+.+..|++-|.++|.-.+..
T Consensus 83 F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 99999999999999877654
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.87 E-value=9.6e-09 Score=67.87 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=48.7
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG 93 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG 93 (174)
+|++|+++ .|++|.+++.+|+.. ++.|..+|+..+++ +.+.+| ..++|+|+|+|++++
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~-i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSP------TCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYG-VMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECC------CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcC-CcccCEEEECCEEEE
Confidence 58999998 699999999999875 68999999977654 455566 788999999999875
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.80 E-value=4.8e-08 Score=66.72 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC--CEEEeccchhhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK--GRYIGGADEVVGLH 102 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~--G~~IGG~del~~l~ 102 (174)
++||+.+ .|++|.+|+.+|+.+|++|+.+++..+.....++.+..+ ..++|++..+ |..+.+...+.+..
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGG-KVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCC-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 6799987 799999999999999999999999877666778887766 7899999773 56666666655443
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.68 E-value=1.6e-07 Score=63.60 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=52.2
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC----CEEEeccchhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK----GRYIGGADEVVG 100 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~----G~~IGG~del~~ 100 (174)
+|+||+.. .||+|.+++.+|..+||+|+++++.. ..+.+++ ..+ ..++|+|+++ |..|.....+.+
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~-~~~vP~l~~~~~~~~~~l~eS~~I~~ 70 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSS-YKKVPILRVESGGDGQQLVDSSVIIS 70 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhC-CCccCEEEECCCCCccEEEcHHHHHH
Confidence 58899987 79999999999999999999999843 3344553 344 7899999987 666666665544
Q ss_pred h
Q 047313 101 L 101 (174)
Q Consensus 101 l 101 (174)
.
T Consensus 71 y 71 (77)
T cd03040 71 T 71 (77)
T ss_pred H
Confidence 3
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.61 E-value=1.3e-07 Score=60.77 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=54.6
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
+||+.+ .|++|.+++.+|+.++++|+.+++..+.....++++..+ ..++|.|+++|..+++...+.+
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNP-LGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHH
Confidence 578876 699999999999999999999998755433336777766 8899999999999988776644
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.59 E-value=3e-07 Score=61.37 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=53.0
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGLH 102 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l~ 102 (174)
+||+.. .||+|.+++.+|..+|++|+++.+...... ...+..+ ..++|+|+++ |..+++...+.+..
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~-~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIG-AKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcC-CCccCEEEeCCCeEeehHHHHHHHH
Confidence 578876 699999999999999999999988755322 2234555 7789999997 88999888876654
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.53 E-value=5.4e-07 Score=63.27 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccch
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADE 97 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~de 97 (174)
+|-..+.++||+.+ .|++|.+++.+|+.+|++|+.+++.... ..+++.+... ..++|+|.++ |..+.....
T Consensus 12 ~~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np-~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 12 PPPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNP-QGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCC-CCCcCEEEECCCCEEECHHH
Confidence 45677899999987 7999999999999999999999886542 2345666665 7899999998 777766655
Q ss_pred hhhh
Q 047313 98 VVGL 101 (174)
Q Consensus 98 l~~l 101 (174)
+.+.
T Consensus 84 I~~y 87 (89)
T cd03055 84 ICEY 87 (89)
T ss_pred HHHh
Confidence 5443
No 40
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.41 E-value=3.2e-07 Score=67.41 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=41.1
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+++ .|++|++|+++|+++|++|+++|+..++..+++|.++.+
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 6799997 899999999999999999999999988877877776654
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.36 E-value=2.1e-06 Score=57.10 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=51.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
++||+.+ .|++|.+++.+|+.+|++|+++++... ....++++... ..++|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNP-YGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence 4789887 799999999999999999999888644 22346666655 77999998888766655555443
No 42
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.33 E-value=5.8e-06 Score=57.27 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=43.7
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
+|++||++ +|+-|..++.+|+.. .+.++.+||..|++ +.++++ ..+|+|+++|
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC--TSTSEEEETT
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc--CCCCEEEEcC
Confidence 58999987 999999999999964 46799999998877 555665 6899999999
No 43
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.31 E-value=5.7e-07 Score=64.99 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=40.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+++ +|++|++|+++|+++|++|+++||..++...++|.++++
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 5799997 899999999999999999999999887777777777765
No 44
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.25 E-value=2.2e-06 Score=64.86 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=40.6
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
|+||+++ .|++|++|+++|+++||+|+++|+..++..+++|.+..
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 7899997 89999999999999999999999998888777776654
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.21 E-value=4.1e-06 Score=55.43 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=49.4
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV 98 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del 98 (174)
++||+.+ .|++|.+++.+|..++++|+.+.+... .....++.+... ..++|.+.+ +|..+.....+
T Consensus 1 ~~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~l~es~aI 69 (74)
T cd03051 1 MKLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP-AGTVPVLELDDGTVITESVAI 69 (74)
T ss_pred CEEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC-CCCCCEEEeCCCCEEecHHHH
Confidence 3689986 699999999999999999988887542 233456777766 789999997 55555444433
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.18 E-value=7.7e-06 Score=54.61 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=50.1
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV 98 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del 98 (174)
+||+.+ .|++|.+++.+|..+|++|+.+++..... ..++.++.. ..++|.+..+ |..|.....+
T Consensus 2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np-~~~vP~L~~~~g~~l~eS~aI 66 (71)
T cd03060 2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASP-KGTVPVLVLGNGTVIEESLDI 66 (71)
T ss_pred EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCC-CCCCCEEEECCCcEEecHHHH
Confidence 689887 69999999999999999999988865322 356777665 7899999996 7776554443
No 47
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.15 E-value=9.1e-06 Score=54.20 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=51.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
++||+.+ .|++|.+++.+|+.+|++|+.+++.. ......++.+... ...+|.+.++|..|.....+.
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~ 69 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP-QHTVPTLVDNGFVLWESHAIL 69 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc-CCCCCEEEECCEEEEcHHHHH
Confidence 3689887 69999999999999999999888763 3334567777765 679999998887665544443
No 48
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.14 E-value=6.6e-06 Score=55.66 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=56.1
Q ss_pred EEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 28 lYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
||+.+ .|++|.+++.+|+.+||+|+.+++..... ..++.++.. ..++|.+..+|..|.+...+.+..+
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p-~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP-KGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST-TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc-cccceEEEECCEEEeCHHHHHHHHH
Confidence 57776 68999999999999999999999875433 567777776 8899999999999988877765543
No 49
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.14 E-value=5.4e-06 Score=61.21 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=41.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+.+ +|++|++|+++|+++||+|+++|+..++..+++|.++..
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence 5799987 899999999999999999999999998888888876653
No 50
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.10 E-value=7.3e-06 Score=60.40 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=40.4
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+.+ +|+.|++|+++|+++||+|+++|+..++..+++|.+...
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 7899987 899999999999999999999999888777777766653
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.08 E-value=1.7e-05 Score=52.47 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=51.9
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
+++|+.. .|++|.+++.+|+.+|++|+++++... .....++.+... ..++|.+.++|..|.....+.
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~i~es~aI~ 69 (73)
T cd03056 1 MKLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP-NGEVPVLELDGRVLAESNAIL 69 (73)
T ss_pred CEEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC-CCCCCEEEECCEEEEcHHHHH
Confidence 3688886 689999999999999999999988642 334466777655 778999999988776555443
No 52
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.01 E-value=4.8e-05 Score=51.39 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=43.1
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----CC--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR 90 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~ 90 (174)
+|++|+++ .|++|..++.+|+. ++ +.+..+|+..+++. .+..| ..++|+++++|+
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSP------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYG-IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECC------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcC-CccCCEEEECCE
Confidence 58899988 59999999999864 33 67788898766653 33455 788999999997
No 53
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.01 E-value=8.9e-06 Score=61.72 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=38.1
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
|+||+.+ .|+.|++|+++|+++||+|+++|+..++-.+++|.+..
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 7899987 89999999999999999999999987765555555543
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.00 E-value=9.9e-06 Score=61.38 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=39.1
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
|+||+.+ .|+.|++|+++|+++||+|+++|+..++-..++|.+.+
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 7899997 89999999999999999999999988766666665554
No 55
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.97 E-value=8.8e-06 Score=59.36 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=39.6
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+.+ +|+.|++|+++|+++|++|+++|+..++-..++|.+++.
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 6899997 899999999999999999999999888666666666553
No 56
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.89 E-value=1.6e-05 Score=58.75 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=39.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
.|+||+.+ .|+.|++|+++|+++|++|+++|+..++-.+++|.+++
T Consensus 1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 37899997 89999999999999999999999987765566666554
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.89 E-value=0.00011 Score=49.00 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=48.2
Q ss_pred CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 35 GIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 35 ~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
++...|++|.+++.+|+.++++|+.+++.... .. ....+|.+.++|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~-p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS-PTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC-CCcccCEEEECCEEEcCHHHHHHHHh
Confidence 44557999999999999999999999996532 33 36689999999999988877665443
No 58
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.85 E-value=7e-05 Score=63.62 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
+-++++|.-. |||+|.+||++|+-++|+|..+.| |+-.+++++=- . ...+|.|.|+|+.+-+..-+..+.
T Consensus 88 ~L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk~S-s-ykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 88 PLDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIKWS-S-YKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred CceEEEEeec------cCchHHHHHHHHhhcCCceEEEEe--cchhhhhcccc-c-cccccEEEeccceechhHHHHHHH
Confidence 3589999875 899999999999999999999998 67777777533 2 788999999998776666655554
Q ss_pred ------hcCchhHHhhcCCCCC
Q 047313 103 ------EQGKLKKLLEGIPRNL 118 (174)
Q Consensus 103 ------e~G~L~~~L~~~~~~~ 118 (174)
..-.|.++++.+|+..
T Consensus 158 aTyLq~~~q~l~eiiq~yPa~~ 179 (370)
T KOG3029|consen 158 ATYLQDKRQDLGEIIQMYPATS 179 (370)
T ss_pred HHHhccCCCCHHHHHHhccccc
Confidence 3357888898888754
No 59
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.83 E-value=6.3e-05 Score=53.15 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=48.0
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG 93 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG 93 (174)
++=+|.+|+++ +|++|..++.+++.. +++|..+|++..++ +.+.+| -..+|.++|||+.++
T Consensus 12 ~pv~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~-V~~vPt~vidG~~~~ 77 (89)
T cd03026 12 GPINFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERG-IMSVPAIFLNGELFG 77 (89)
T ss_pred CCEEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcC-CccCCEEEECCEEEE
Confidence 44469999997 699999999988763 68999999976544 344556 778999999998765
No 60
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.73 E-value=0.00018 Score=48.12 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=49.3
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+.+|+.. .+++|.+++.+|..+|++|+.+++... ....++.++.....++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 3688776 689999999999999999999887543 12234555543136899998888766665555443
No 61
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.69 E-value=0.00025 Score=47.45 Aligned_cols=69 Identities=13% Similarity=-0.003 Sum_probs=52.6
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+++|+.+ .+++|.+++.+|..+|++|+.+.+... ....+++.+... ...+|.+..+|..|.....+.+.
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P-~~~vP~l~~~g~~l~es~aI~~y 72 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNP-FGQIPALEDGDLKLFESRAITRY 72 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence 6788876 689999999999999999999877643 223355666665 78899998888777666555444
No 62
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.68 E-value=0.00023 Score=48.57 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=41.6
Q ss_pred cEEEEEeecCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTI----RFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~v----r~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I 92 (174)
+|.+|+ + .|+.|..+ +.++++++++++.++|.... +..+ +| ..++|.|+|||+.+
T Consensus 2 ~i~~~a-~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~----~a~~-~~-v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-T------GCANCQMTEKNVKKAVEELGIDAEFEKVTDMN----EILE-AG-VTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-C------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHH-cC-CCcCCEEEECCEEE
Confidence 467777 5 59999999 66778899999999997322 2322 45 88999999999765
No 63
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.68 E-value=0.00016 Score=48.82 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
+++|..+ .++.|.+++.+|+.+|++|+.+.+... .....++.++.. ..++|.+..+|..+.....+.+
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP-~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP-TGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc-CCCCCEEEECCEEEEcHHHHHH
Confidence 4688876 689999999999999999988877543 223456777766 7899999988887766555543
No 64
>PHA02125 thioredoxin-like protein
Probab=97.67 E-value=0.00023 Score=48.20 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=39.4
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI 92 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I 92 (174)
|++|+++ .|+.|+.++.+|++..+.|..+|...+. ++.+..+ ...+|++. +|+.+
T Consensus 2 iv~f~a~------wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~-v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAE------WCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHH-IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECC------CCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcC-CceeCeEE-CCEEE
Confidence 7888888 4999999999998755445445544433 4556666 78999976 67644
No 65
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.63 E-value=0.00028 Score=48.04 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred CChhHHHHHHHH----HhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE
Q 047313 39 TFEDCRTIRFLL----QSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY 91 (174)
Q Consensus 39 ~c~~C~~vr~iL----~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~ 91 (174)
+|++|..+.+++ ..+++.++.+|+.. . +++ ..+| -.++|.++|||+.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~-~---~~~-~~yg-v~~vPalvIng~~ 59 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIED-F---EEI-EKYG-VMSVPALVINGKV 59 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETTT-H---HHH-HHTT--SSSSEEEETTEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccC-H---HHH-HHcC-CCCCCEEEECCEE
Confidence 699999777755 56889999999833 2 234 4556 8899999999984
No 66
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.59 E-value=0.00055 Score=45.94 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=51.5
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+++|... .++.+.+++.+|...|++|+.+.+..+ ....++..... ..++|.+..+|..|.....+.+.
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKML-FGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence 5788775 479999999999999999999988652 33445555543 67899999998877766655444
No 67
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00025 Score=48.99 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=46.9
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-----------CCCCCCcEEEEC-CEEEec
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-----------SGRVIPPRLFIK-GRYIGG 94 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-----------g~~~~~P~vFI~-G~~IGG 94 (174)
++|.+. .||+|..+.+.|++.+|.|+++||..+-...+++..+- .+...+|.+.++ |+.|=|
T Consensus 5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 788887 69999999999999999999999976644333333221 236788999874 454433
Q ss_pred cchh
Q 047313 95 ADEV 98 (174)
Q Consensus 95 ~del 98 (174)
+++
T Consensus 79 -~Dl 81 (85)
T COG4545 79 -DDL 81 (85)
T ss_pred -chh
Confidence 444
No 68
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00011 Score=54.75 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=38.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
.|+||+.+ .|.-|++|+++|+++||+|+++|+..++--+++|.+..
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 48999997 89999999999999999999999987755556655543
No 69
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.52 E-value=0.00095 Score=47.62 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=55.6
Q ss_pred cEEEEEeecCCC--CCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 25 SVIFYTTSLRGI--RKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 25 ~VvlYttsl~~i--r~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
.+.+|.+.-++. ...|++|++++.+|..+||+|+.++|.+... -+.+.++.- ...+|.+..+|..|.....+.+..
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP-~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAP-GTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHHH
Confidence 466666654331 3579999999999999999998888864421 144666654 678999998998887777665554
Q ss_pred h
Q 047313 103 E 103 (174)
Q Consensus 103 e 103 (174)
+
T Consensus 83 d 83 (91)
T cd03061 83 E 83 (91)
T ss_pred H
Confidence 3
No 70
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.52 E-value=0.00035 Score=46.07 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=48.8
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
++|+.. .++.|.+++.+|..+|++|+.+.+... .....++.+... ...+|.+..+|..+.....+.
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~ 69 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP-QGLVPTLVIDGLVLTQSLAII 69 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC-CCCCCEEEECCEEEEcHHHHH
Confidence 577665 568899999999999999998877543 223456666665 789999998887775554443
No 71
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.49 E-value=0.00063 Score=45.16 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=48.3
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
+||... .++.|.+++.+|+.+|++|+.+.+........++..... ..++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p-~~~vP~L~~~~~~l~es~aI~~ 68 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLP-FGQLPVLEIDGKKLTQSNAILR 68 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCc-CCCCCEEEECCEEEEecHHHHH
Confidence 577765 568999999999999999999988643322233444433 7799999988877665554433
No 72
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.44 E-value=0.00019 Score=52.97 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=38.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+.+ +|+-|++|+++|++++++|+++|+..++-..++|.++..
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5799987 899999999999999999999999877665666665553
No 73
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.43 E-value=0.0002 Score=52.65 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=36.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS 75 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~ 75 (174)
|+||+.+ +|.-|++|+++|++++++|+++|+..++-..+++.++
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~ 44 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELREL 44 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHH
Confidence 5799987 8999999999999999999999997665444444443
No 74
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.43 E-value=0.00069 Score=46.02 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=49.3
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEEC---CEEEeccchhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIK---GRYIGGADEVVG 100 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~---G~~IGG~del~~ 100 (174)
++||+.+ . ++|.+++.+|+.+|++|+.+.+.. ......++.+... ..++|.+..+ |..|.....+.+
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~g~~l~eS~aI~~ 73 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP-NGRIPAIVDHNGTPLTVFESGAILL 73 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc-CCCCCEEEeCCCCceEEEcHHHHHH
Confidence 6789875 4 999999999999999998777653 2334466777665 7789999887 666655444433
No 75
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.41 E-value=0.00056 Score=45.50 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQS--FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVV 99 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~--~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~ 99 (174)
++|+.. .+++|.+++.+|.. ++++|+.+.+... ....++.+... ..++|.+.. +|..+.....+.
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p-~~~vP~l~~~~g~~l~es~aI~ 69 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNP-LGKIPALVLDDGEALFDSRVIC 69 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCC-CCCCCEEEECCCCEEECHHHHH
Confidence 578776 68999999999999 8999999988542 22345556554 788999985 666665544443
No 76
>PRK10853 putative reductase; Provisional
Probab=97.39 E-value=0.00022 Score=53.10 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
|+||+.+ .|.-|++|+++|+++|++|+++|+..++--.++|.+.+.
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 7899987 899999999999999999999999877665666666553
No 77
>PRK10026 arsenate reductase; Provisional
Probab=97.37 E-value=0.00026 Score=54.43 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=38.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
.|+||+.+ .|.-|++|+++|++++++|+++|+..++-..++|..++
T Consensus 3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 58999997 89999999999999999999999977755555555443
No 78
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.34 E-value=0.0003 Score=53.00 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=35.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS 74 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~ 74 (174)
.|+||+.+ .|.-|++|+++|+++||+|+++|+..++--+++|..
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~ 45 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRP 45 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHH
Confidence 47899987 899999999999999999999999765444444433
No 79
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.32 E-value=0.00018 Score=53.24 Aligned_cols=54 Identities=22% Similarity=0.546 Sum_probs=42.7
Q ss_pred CCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccccCCCCC
Q 047313 119 SDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS 174 (174)
Q Consensus 119 ~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~C~~C~ 174 (174)
....|..|.|.+..+|..|+|+..+...... ......+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g--~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGG--GEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCC--cEEEEEECCCCCCcceeeCCCCC
Confidence 4567999999999999999999777643321 11236899999999999999983
No 80
>PRK10387 glutaredoxin 2; Provisional
Probab=97.31 E-value=0.00095 Score=52.80 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EECCEEEeccchhhhhhhc
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FIKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~G~~IGG~del~~l~e~ 104 (174)
++||+.+ .||+|.+++.+|+.+||+|+.+++...... .. .+..+ ..++|+| ..+|..|.....+.+..++
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p-~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIG-QKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcC-CcccceEEecCCeEecCHHHHHHHHHH
Confidence 4688876 689999999999999999999998654322 22 33444 6799999 5688888877776665543
No 81
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.29 E-value=0.00084 Score=53.88 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=51.6
Q ss_pred EEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhhhc
Q 047313 28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 28 lYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~e~ 104 (174)
+|+.. .||+|.+|+.+|..+|++|+.+++..+.. .. ..+... ..++|++. .+|..|.+...+.+..++
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np-~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIG-AKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcC-CCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 67765 68999999999999999999998855432 12 234443 67899997 788888888777665443
No 82
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.20 E-value=0.0031 Score=42.38 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=49.9
Q ss_pred EEEEEeec-CCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 26 VIFYTTSL-RGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 26 VvlYttsl-~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
++||.... .+.+..+++|.+++.+|+..|++|+.+.+.. ..... ..++|.+..+|+.|.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p-~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSP-KGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCC-CCCCCEEEECCEEEcCHHHHHHHH
Confidence 46676542 1233457999999999999999999988853 13333 678999999999887777665543
No 83
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.10 E-value=0.0011 Score=48.54 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
....|+||.+. +.|++|..++.+|+.. .+.|..+|+..++ ++.+.++ ..++|.++|
T Consensus 21 ~~~~vvv~f~a-----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~-v~~vPt~~i 81 (113)
T cd02975 21 NPVDLVVFSSK-----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG-VERVPTTIF 81 (113)
T ss_pred CCeEEEEEeCC-----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC-CCcCCEEEE
Confidence 34457777542 2599999999999764 3678999997665 4555666 889999988
No 84
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.05 E-value=0.003 Score=38.17 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=42.7
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQ-----SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~-----~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
+++|..+ .|++|.+++..|+ ..++.+..+|+.......+.. ...+ ...+|.+++.+
T Consensus 1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYG-VGGVPTLVVFG 61 (69)
T ss_pred CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCC-CccccEEEEEe
Confidence 3566665 6999999999999 678999999998877655542 2334 67899998765
No 85
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.00 E-value=0.0038 Score=41.75 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=48.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del 98 (174)
+++|..+ ..+.|.+++.+|...|++|+.+.+... +....++.++.. ..++|.+..+|..|.....+
T Consensus 1 ~~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~L~~~~~~l~eS~aI 68 (76)
T cd03050 1 LKLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINP-FGKVPAIVDGDFTLAESVAI 68 (76)
T ss_pred CEEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCc-CCCCCEEEECCEEEEcHHHH
Confidence 3678876 579999999999999999998877532 222345666655 78999998887665544444
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.95 E-value=0.0095 Score=41.76 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=41.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG 94 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG 94 (174)
-+++|+++ .|+.|..+...|+. .++.+..+|+..++++ .+..+ ...+|.+++ +|+.++-
T Consensus 16 vlv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~~-v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 16 ILVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAAG-IMGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCC-CeeccEEEEEECCeEEEE
Confidence 34455555 69999999998876 4578899999877654 34445 678998854 7766543
No 87
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.94 E-value=0.004 Score=41.80 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=48.9
Q ss_pred CCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 34 RGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 34 ~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
.+.+..++++.+++.+|+.+|++|+.+.+.... +...++.+... ...+|.+..+|..|.....+.
T Consensus 4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~ 69 (73)
T cd03043 4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSP-TGKVPVLVDGGIVVWDSLAIC 69 (73)
T ss_pred EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCC-CCcCCEEEECCEEEEcHHHHH
Confidence 455678999999999999999999988875432 23356666655 789999999987766554443
No 88
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.92 E-value=0.0075 Score=40.04 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=43.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG 94 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG 94 (174)
-+++|+++ .|+.|..+...|+. .++.|..+|+..+..+... .+ ...+|++++ +|+.++-
T Consensus 13 ~ll~~~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 13 VVVDFWAP------WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YG-VRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred EEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cC-cccccEEEEEECCEEEEE
Confidence 35555554 69999999999988 7888999999876665443 34 678999876 7774433
No 89
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.91 E-value=0.0024 Score=43.73 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEee-cCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhhh
Q 047313 27 IFYTTS-LRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGLH 102 (174)
Q Consensus 27 vlYtts-l~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l~ 102 (174)
++|+.+ ..+.+..+++|.+++.+|..++++|+.+.+... .....++ +... ...+|.|..+ |..|.+...+.+..
T Consensus 2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p-~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGG-FYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCC-CceeCeEEECCCCEEeCHHHHHHHH
Confidence 455443 223456789999999999999999998877543 2223334 3333 6789999888 77777666665543
No 90
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.90 E-value=0.0035 Score=42.02 Aligned_cols=64 Identities=11% Similarity=-0.059 Sum_probs=47.0
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEEC-CEEEeccch
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIK-GRYIGGADE 97 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~-G~~IGG~de 97 (174)
++|+.. .++.+.+++.+|..+|++|+.++|.... ....++.++.- ..++|.+..+ |..|.....
T Consensus 2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP-~~~vP~L~~~~g~~l~es~a 67 (75)
T cd03044 2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFP-LGKVPAFEGADGFCLFESNA 67 (75)
T ss_pred eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCC-CCCCCEEEcCCCCEEeeHHH
Confidence 467765 6899999999999999999999886542 22345666654 7899999885 655544333
No 91
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.83 E-value=0.0047 Score=40.96 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=48.2
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
++|+.. . +.+.+++.+|...|++|+.+.+... .....++.+... ...+|.+..+|..|.....+.+.
T Consensus 2 ~l~~~~------~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~g~~l~es~aI~~y 70 (76)
T cd03046 2 TLYHLP------R-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINP-LGKVPVLVDGDLVLTESAAIILY 70 (76)
T ss_pred EEEeCC------C-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence 577654 2 5688999999999999998877542 223455666654 78999999888877666555444
No 92
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.80 E-value=0.005 Score=49.20 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=53.0
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
..++||+.. .|++|.+++.+|..+|++|+.+.|... ....++.++.- ..++|.+..+|..|--...+.+
T Consensus 9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP-~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNP-YQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCC-CCCCCEEEECCEEeeCHHHHHH
Confidence 358899976 689999999999999999999988643 22346666654 6799999998877655555543
No 93
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.73 E-value=0.0034 Score=45.66 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
.|.-|++|+++|+++|+.|+++|+..++--+++|.++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 89999999999999999999999988766666665543
No 94
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.65 E-value=0.01 Score=39.45 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=47.8
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del 98 (174)
.+|... ..+.+.+++.+|..+|++|+.+++... .....++.+... ..++|.+..+|..|.....+
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP-~~~vP~L~~~~~~l~eS~aI 68 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNP-NGRVPVLEDGDFVLWESNAI 68 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCC-CCCCCEEEECCEEEECHHHH
Confidence 578765 468999999999999999998887532 233456666655 77999998888766544433
No 95
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.61 E-value=0.0025 Score=42.50 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhhhh
Q 047313 40 FEDCRTIRFLLQSFKVTFYERDVS---LHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGLHE 103 (174)
Q Consensus 40 c~~C~~vr~iL~~~~v~~~e~Dv~---~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l~e 103 (174)
||++.+++-+|+.+|++|+..-+. .......++.++.+ ..++|.|.. +|..|.....+.+..+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p-~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP-RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 899999999999999998876552 12222356777777 889999998 8898887777665543
No 96
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.60 E-value=0.008 Score=40.20 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=44.9
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV 98 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del 98 (174)
.||+.+ .+ .+.+++.+|..+|++|+.+++.... ....++.+... ...+|.+..+ |..+.....+
T Consensus 2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np-~~~vP~l~~~~g~~l~eS~aI 68 (77)
T cd03057 2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP-KGQVPALVLDDGEVLTESAAI 68 (77)
T ss_pred EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC-CCCCCEEEECCCcEEEcHHHH
Confidence 578765 23 4788999999999999887775432 23456777665 7899999887 6555444433
No 97
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.60 E-value=0.011 Score=41.80 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=39.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHH------Hh---CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLL------QS---FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL------~~---~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
-+|.|+++ .|++|..+...+ .. .++.+..+|+..+.....++.+.++ ..++|.+++
T Consensus 14 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~-i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG-VFGPPTYLF 78 (104)
T ss_pred EEEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC-CCCCCEEEE
Confidence 35556665 599999887543 11 1677888898776555567777777 889998854
No 98
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.51 E-value=0.015 Score=48.24 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=55.8
Q ss_pred EEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 26 VIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 26 VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
|.+|.+.-.. ....||+|++++.+|..+|++|+.+.|..... .+++.++.- ..++|++..+|..|.....+.+..+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP-~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAP-GTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCc-CCCCCEEEECCEEeecHHHHHHHHH
Confidence 5566665222 12579999999999999999998888865422 356666655 6789999888888877777666554
No 99
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.43 E-value=0.015 Score=46.95 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=41.9
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
-.|++|+++ .|++|..++.+|+.+ .|.+..+|+..+++.. +.++ ..++|+++|++
T Consensus 135 v~I~~F~a~------~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~----~~~~-V~~vPtl~i~~ 194 (215)
T TIGR02187 135 VRIEVFVTP------TCPYCPYAVLMAHKFALANDKILGEMIEANENPDLA----EKYG-VMSVPKIVINK 194 (215)
T ss_pred cEEEEEECC------CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHH----HHhC-CccCCEEEEec
Confidence 367778887 599999999999864 4677788887766543 3455 78899999865
No 100
>PHA02278 thioredoxin-like protein
Probab=96.39 E-value=0.024 Score=40.99 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=48.4
Q ss_pred HhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcE
Q 047313 11 LKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPR 84 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~ 84 (174)
+.+|.+.- ...+.|+||... +.|+.|+.+..+|+.. .+.+..+||..++.-..++.+..+ -.++|+
T Consensus 4 ~~~~~~~i--~~~~~vvV~F~A-----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT 75 (103)
T PHA02278 4 LVDLNTAI--RQKKDVIVMITQ-----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPV 75 (103)
T ss_pred HHHHHHHH--hCCCcEEEEEEC-----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccE
Confidence 55666665 244555555544 3599999988877552 356888999765322334666666 788898
Q ss_pred E--EECCEEEe
Q 047313 85 L--FIKGRYIG 93 (174)
Q Consensus 85 v--FI~G~~IG 93 (174)
+ |-||+.++
T Consensus 76 ~i~fk~G~~v~ 86 (103)
T PHA02278 76 LIGYKDGQLVK 86 (103)
T ss_pred EEEEECCEEEE
Confidence 7 44887653
No 101
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.38 E-value=0.022 Score=42.30 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHH----hCCCcEEEEECCCCH-------HHHHHHHHhcC---CCCCCcEEE--ECCEEEecc
Q 047313 38 KTFEDCRTIRFLLQ----SFKVTFYERDVSLHM-------EFRDELWSSLS---GRVIPPRLF--IKGRYIGGA 95 (174)
Q Consensus 38 ~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~-------~~~~el~~~~g---~~~~~P~vF--I~G~~IGG~ 95 (174)
++||+|+.+.-.|+ ..++++..+|+..+. ....++.+..+ +-..+|.++ -+|+.++..
T Consensus 33 ~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 33 KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR 106 (122)
T ss_pred CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence 37999999766664 456889999997543 12234444433 134589884 589877654
No 102
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.19 E-value=0.019 Score=52.25 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=46.8
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEec
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGG 94 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG 94 (174)
.++-.|.+|.|+ +||+|-.|+.+++.. .|..+.+|....++. .+.++ ...+|.+||||+.++.
T Consensus 116 ~~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~-v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 116 NGPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALG-IQGVPAVFLNGEEFHN 183 (515)
T ss_pred CCCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcC-CcccCEEEECCcEEEe
Confidence 345579999997 899999999988764 556777777555543 34445 6799999999986643
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.14 E-value=0.018 Score=52.34 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=46.7
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG 93 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG 93 (174)
++-.|.+|.|+ +||+|..++.+++.. .|..+.+|....++.. +.++ ...+|.+||||+.+.
T Consensus 116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~----~~~~-v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEV----EARN-IMAVPTVFLNGEEFG 181 (517)
T ss_pred CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHH----HhcC-CcccCEEEECCcEEE
Confidence 45579999997 899999999988763 5667888876655543 3445 679999999997654
No 104
>PRK09381 trxA thioredoxin; Provisional
Probab=96.13 E-value=0.08 Score=37.51 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=51.4
Q ss_pred hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313 13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF 86 (174)
.|++.--..+..-++.|+++ .|+.|..+...|+. + ++.+..+|+..++.. .+.++ ..++|.++
T Consensus 12 ~~~~~v~~~~~~vvv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~ 80 (109)
T PRK09381 12 SFDTDVLKADGAILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG-IRGIPTLL 80 (109)
T ss_pred hHHHHHhcCCCeEEEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCC-CCcCCEEE
Confidence 45443222233344555555 59999999877754 2 366788888776654 33445 78899885
Q ss_pred E--CCEEEeccchhhhhhhcCchhHHhhc
Q 047313 87 I--KGRYIGGADEVVGLHEQGKLKKLLEG 113 (174)
Q Consensus 87 I--~G~~IGG~del~~l~e~G~L~~~L~~ 113 (174)
+ +|+.++-+.... ...+|..+|+.
T Consensus 81 ~~~~G~~~~~~~G~~---~~~~l~~~i~~ 106 (109)
T PRK09381 81 LFKNGEVAATKVGAL---SKGQLKEFLDA 106 (109)
T ss_pred EEeCCeEEEEecCCC---CHHHHHHHHHH
Confidence 5 888775443221 12345555543
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.06 E-value=0.063 Score=36.92 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=42.9
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG 93 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG 93 (174)
...++||..+ +.|+.|..++..|.. + +|.|-.+|+..++. +.+..+ ...+|.++ -+|+.+.
T Consensus 17 ~~~vvv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA-----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYG-VKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES-----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTT-CSSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC-----CCCCccccccceecccccccccccccchhhhhccch----hhhccC-CCCCCEEEEEECCcEEE
Confidence 3555555554 369999999988854 3 58899999987644 444555 78899984 4777665
No 106
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.037 Score=45.89 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=53.1
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
++.|.||++- .||+-++++-.|+.+||+|+.+++.... --+.|.+..--...+|+|..||+.|.-.-.+.+.
T Consensus 7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHH
Confidence 4789999986 7999999999999999999888875432 1123444442367899999999987644444333
No 107
>PRK15113 glutathione S-transferase; Provisional
Probab=95.97 E-value=0.039 Score=44.11 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=52.3
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
..++||+.+. ..+++|.+++.+|..+||+|+.+.+.. .+....++.++.- ...||++.++|..|-....+.+
T Consensus 4 ~~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 4 PAITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSL-TRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred CeEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCC-CCCCCEEEECCEEEecHHHHHH
Confidence 3478999642 147999999999999999998887753 2233456776654 7799999999876655444433
No 108
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.90 E-value=0.067 Score=36.31 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=43.9
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--hcCCCCCCcEEEECCEEEeccchh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--SLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--~~g~~~~~P~vFI~G~~IGG~del 98 (174)
.++|..+ ..+.+.+++.+|+..|++|+.+.+...+++.+ +.. ..- ..++|.|.+||..|...-.+
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~-~g~vP~L~~~g~~l~ES~AI 68 (79)
T cd03077 2 PVLHYFN------GRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLM-FQQVPMVEIDGMKLVQTRAI 68 (79)
T ss_pred CEEEEeC------CCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCC-CCCCCEEEECCEEEeeHHHH
Confidence 5688876 34688999999999999999887754333211 111 111 45899999888766544443
No 109
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.86 E-value=0.028 Score=51.66 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY 91 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~ 91 (174)
++-+|.+|.++ +||+|-.+.+.++. . +|..+.+|+...++ +.+.++ ..++|.++|||+.
T Consensus 476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~-v~~vP~~~i~~~~ 539 (555)
T TIGR03143 476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYG-IMSVPAIVVDDQQ 539 (555)
T ss_pred CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhCC-ceecCEEEECCEE
Confidence 44568898887 89999988876654 4 79999999977654 444455 7889999999964
No 110
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.77 E-value=0.078 Score=38.25 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccchhhhh
Q 047313 39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADEVVGL 101 (174)
Q Consensus 39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~del~~l 101 (174)
.|+.|..+...|+. .++.|..+|+..+ ++.+..+ -..+|.+ |-+|+.++.......+
T Consensus 35 ~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~-i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 35 GFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD-IKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC-CCcCCEEEEEECCEEEEEEecHHHh
Confidence 59999999888865 2577888888543 5566666 7789987 5699887666554444
No 111
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.74 E-value=0.13 Score=37.45 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD 96 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d 96 (174)
+.|+||..+ +.|+.|+.+...|+. .++.|..+|+...++ +.+..+ ...+|.+ |-+|+.++-..
T Consensus 23 ~~vvV~f~a-----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~-v~~vPt~l~fk~G~~v~~~~ 92 (113)
T cd02989 23 ERVVCHFYH-----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLN-IKVLPTVILFKNGKTVDRIV 92 (113)
T ss_pred CcEEEEEEC-----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCC-CccCCEEEEEECCEEEEEEE
Confidence 456555554 369999999888865 357899999987665 444445 7788887 55998765443
Q ss_pred hh
Q 047313 97 EV 98 (174)
Q Consensus 97 el 98 (174)
.+
T Consensus 93 g~ 94 (113)
T cd02989 93 GF 94 (113)
T ss_pred Cc
Confidence 33
No 112
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=95.66 E-value=0.012 Score=39.31 Aligned_cols=44 Identities=27% Similarity=0.672 Sum_probs=26.6
Q ss_pred ceEeCCCCCCCeeeeecCCC-CCCccccccCcccccCcccc----CCCC
Q 047313 130 RFVLCSNCSGSCKVFRDGDD-DDDDELHIRCPECNENGLVK----CPFC 173 (174)
Q Consensus 130 r~v~C~~C~Gs~k~~~~~~~-~~~~~~~~rC~~CnenGl~~----C~~C 173 (174)
....|+.|+|+..++..... .........|+.|+=.|.+. |+.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 34889999999777754421 01123478899999998774 7777
No 113
>PLN02473 glutathione S-transferase
Probab=95.62 E-value=0.043 Score=43.51 Aligned_cols=69 Identities=10% Similarity=-0.016 Sum_probs=50.7
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+.||+.. +.+.+.+++-+|..+|++|+.+.+... +....++..+.- ...+|.+..+|..|.....+.+.
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQP-FGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCC-CCCCCeEEECCEEEEehHHHHHH
Confidence 5788875 578999999999999999988765322 233445555543 67999999999888777666554
No 114
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.037 Score=43.01 Aligned_cols=91 Identities=18% Similarity=0.357 Sum_probs=62.4
Q ss_pred hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCc
Q 047313 10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPP 83 (174)
Q Consensus 10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P 83 (174)
++..|+.+--..+..-+|-|+.+| |..|+.+.-+|+++ .+.+-.+|+..+.++.. .++ -..+|
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~----~Y~-I~avP 117 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE----DYE-ISAVP 117 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh----hcc-eeeee
Confidence 456677776556666788899987 99999999988763 45678888877776444 445 67888
Q ss_pred EE--EECCEEEeccchhhhhhhcCchhHHhhcC
Q 047313 84 RL--FIKGRYIGGADEVVGLHEQGKLKKLLEGI 114 (174)
Q Consensus 84 ~v--FI~G~~IGG~del~~l~e~G~L~~~L~~~ 114 (174)
.| |-||+-+ |.+..+.....|..+++++
T Consensus 118 tvlvfknGe~~---d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 118 TVLVFKNGEKV---DRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEEECCEEe---eeecccCCHHHHHHHHHHH
Confidence 87 5688765 3333334444566666543
No 115
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0069 Score=53.41 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=42.0
Q ss_pred CCCCCCCCCc------ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNI------RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~------r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|+ .-..|+.|||+..+....+. ........|+.||=.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCC
Confidence 5579999999 78899999999877655522 112357999999999977 699883
No 116
>PTZ00051 thioredoxin; Provisional
Probab=95.54 E-value=0.094 Score=36.22 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEec
Q 047313 39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGG 94 (174)
Q Consensus 39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG 94 (174)
.|+.|+.+...|+. .++.|..+|+..... +.+..+ ...+|.+. -+|+.++.
T Consensus 29 ~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~~~~~ 86 (98)
T PTZ00051 29 WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKEN-ITSMPTFKVFKNGSVVDT 86 (98)
T ss_pred CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCC-CceeeEEEEEeCCeEEEE
Confidence 69999999888876 357888888865443 444455 67788774 47765543
No 117
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.41 E-value=0.03 Score=44.15 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCC-C--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSL-H--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~-~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
+++.+.+++.+|..+||+|+.+.+.. . .....++.+..- ..++|.+.++|..|-....+...
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNP-QGLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCC-CCcCCEEEECCEEeecHHHHHHH
Confidence 57899999999999999999888763 1 122345666654 78999999999877666555443
No 118
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.14 E-value=0.17 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=40.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG 93 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG 93 (174)
.|+||..+ ..|+.|..+...|+. + .+.|-.+|.+.++.+ .+.++ ...+|.+++ +|+.+.
T Consensus 16 ~vvi~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 16 PVLVDFWA-----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI----AAKYG-IRSIPTLLLFKNGKEVD 82 (101)
T ss_pred cEEEEEEC-----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcC-CCcCCEEEEEeCCcEee
Confidence 44544444 269999998877754 2 377889998776654 34456 788999866 776543
No 119
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.00 E-value=0.14 Score=35.24 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=37.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I 92 (174)
-++.|.++ .|+.|..+...|.. + .+.+..+|+..+++ +.+.++ ...+|+++ -+|+.+
T Consensus 15 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~-i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 15 VVVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFG-VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcC-CCCCCEEEEEeCCEEe
Confidence 34445555 59999999877764 2 35567888876654 444455 77899986 477654
No 120
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.99 E-value=0.21 Score=41.09 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEE
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYER 60 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~ 60 (174)
+.++..|++||-+ .||+|+++-..|..+ +|.+..+
T Consensus 105 ~~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 105 PQEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455678888886 899999998888774 4665554
No 121
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.98 E-value=0.072 Score=44.76 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
.||+|.+++.+|+.+|++|+.+.|.... ...++.++.- ...+|.+..+|..|.....+.+..
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP-~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISP-EGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence 5999999999999999999987775432 1234555543 679999999998776665555443
No 122
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.87 E-value=0.12 Score=36.66 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHH----------------HHHHHHHhcC
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS---------FKVTFYERDVSLHME----------------FRDELWSSLS 77 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~---------~~v~~~e~Dv~~~~~----------------~~~el~~~~g 77 (174)
...|++|+.+ .|++|+++...+.. .++.+..+++..+.. ...++.+.+|
T Consensus 6 k~~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 6 KPIVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp SEEEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CEEEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 3445555554 79999988666652 135566667754432 2245666667
Q ss_pred CCCCCcEEEE-C--CE---EEeccc
Q 047313 78 GRVIPPRLFI-K--GR---YIGGAD 96 (174)
Q Consensus 78 ~~~~~P~vFI-~--G~---~IGG~d 96 (174)
...+|.+++ | |+ .+-|+-
T Consensus 80 -v~gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 80 -VNGTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp ---SSSEEEECTTTSCEEEEEESS-
T ss_pred -CCccCEEEEEcCCCCEEEEecCCC
Confidence 888999865 4 66 344543
No 123
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=94.84 E-value=0.38 Score=34.07 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=41.2
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG 93 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG 93 (174)
--||.|+.+ .|+.|+.....|+. ..+.|..+|+..++.. .++.+..+ ...+|+++ -+|+.++
T Consensus 17 ~vvv~F~a~------wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~-V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 17 LVVLEFALK------HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREK-IIEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEEEECC------CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcC-CCcCCEEEEEeCCeEEE
Confidence 344445555 59999988888865 2577888888766432 34555556 77899764 4787553
No 124
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.83 E-value=0.27 Score=36.26 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEec
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGG 94 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG 94 (174)
...|+.|+.+| ..||.|..+.-+|+.. + +.|-.+|+..++ ++....+ -.++|++ |-+|+.++.
T Consensus 28 ~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~-V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 28 GDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFG-VLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcC-CCcCCEEEEEECCEEEEE
Confidence 34566666654 2599999999888652 2 457788888776 4555556 7889987 459988765
Q ss_pred cc
Q 047313 95 AD 96 (174)
Q Consensus 95 ~d 96 (174)
..
T Consensus 99 ~~ 100 (111)
T cd02965 99 LA 100 (111)
T ss_pred Ee
Confidence 53
No 125
>PRK10996 thioredoxin 2; Provisional
Probab=94.74 E-value=0.21 Score=37.62 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=45.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEeccc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGAD 96 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~d 96 (174)
-++.|+++ .|+.|..+...|.. .++.|..+|+..++++ .+..+ ...+|.+++ +|+.+.-+.
T Consensus 55 vvv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~-V~~~Ptlii~~~G~~v~~~~ 123 (139)
T PRK10996 55 VVIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARFR-IRSIPTIMIFKNGQVVDMLN 123 (139)
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhcC-CCccCEEEEEECCEEEEEEc
Confidence 34555555 59999988777754 2466778888776654 44455 778898754 887653322
Q ss_pred hhhhhhhcCchhHHhhc
Q 047313 97 EVVGLHEQGKLKKLLEG 113 (174)
Q Consensus 97 el~~l~e~G~L~~~L~~ 113 (174)
. ......|.++|+.
T Consensus 124 G---~~~~e~l~~~l~~ 137 (139)
T PRK10996 124 G---AVPKAPFDSWLNE 137 (139)
T ss_pred C---CCCHHHHHHHHHH
Confidence 1 1233456666653
No 126
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=94.69 E-value=0.48 Score=35.51 Aligned_cols=84 Identities=25% Similarity=0.466 Sum_probs=50.9
Q ss_pred ecCCCCCCChhHHH-----------HHHHHHhCCCc--EEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313 32 SLRGIRKTFEDCRT-----------IRFLLQSFKVT--FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 32 sl~~ir~~c~~C~~-----------vr~iL~~~~v~--~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del 98 (174)
.+....+||+.|.. ++..|..+||. ++++.+......++ ...-|.|.|||+
T Consensus 7 ~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~--------~~~S~~I~inG~-------- 70 (120)
T PF10865_consen 7 HLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQ--------PLESPTIRINGR-------- 70 (120)
T ss_pred EeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhc--------ccCCCeeeECCE--------
Confidence 34444678998864 34456667876 56666644322221 356799999998
Q ss_pred hhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCC-CeeeeecC
Q 047313 99 VGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSG-SCKVFRDG 147 (174)
Q Consensus 99 ~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~G-s~k~~~~~ 147 (174)
.|++|| .+.. ....|..|+ |..|.+ .++++.-+
T Consensus 71 -------piE~~l-~~~v--~~s~C~~c~------~~~g~~~~CRt~~~~ 104 (120)
T PF10865_consen 71 -------PIEDLL-GAEV--GESPCESCG------CSCGGDVDCRTLEYE 104 (120)
T ss_pred -------ehhHhh-CCcc--ccCcccccc------cccCCCccceeEEEC
Confidence 567777 3333 346787776 555544 36766443
No 127
>PLN02378 glutathione S-transferase DHAR1
Probab=94.67 E-value=0.099 Score=41.90 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 38 KTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 38 ~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
..||+|.+|+.+|+.+|++|+.+.|..... ..++.++.- ..++|.+..+|..|.-...+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP-~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISP-QGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHH
Confidence 469999999999999999998777654321 235666654 77999999888766555444443
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.67 E-value=0.13 Score=41.42 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCCCcEEEEEe---ecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313 21 GGEDSVIFYTT---SLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR 90 (174)
Q Consensus 21 ~~~~~VvlYtt---sl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~ 90 (174)
.+.-.|++|++ +| |+.|..+..+|+.. ++.+..+|+..+. -.++.+.++ -..+|.+.+ +|+
T Consensus 18 ~~~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~-V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYG-VERVPTTIILEEGK 88 (215)
T ss_pred CCCeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcC-CCccCEEEEEeCCe
Confidence 34456888988 54 99999999998664 3456677776432 234555566 888999865 655
Q ss_pred EE
Q 047313 91 YI 92 (174)
Q Consensus 91 ~I 92 (174)
.+
T Consensus 89 ~~ 90 (215)
T TIGR02187 89 DG 90 (215)
T ss_pred ee
Confidence 44
No 129
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=94.64 E-value=0.36 Score=35.78 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCcEEE-EEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEe
Q 047313 23 EDSVIF-YTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIG 93 (174)
Q Consensus 23 ~~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IG 93 (174)
.+.|+| |+.+| |+.|+.+.-+|+.. + +.|-.+|+..++++ .+..+ -.++|++ |-+|+.++
T Consensus 14 ~~~vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l----a~~~~-V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 14 EKVVVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF----NKMYE-LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred CCEEEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH----HHHcC-CCCCCEEEEEECCEEEE
Confidence 333444 66664 99999998888542 2 56889999887754 44455 7789988 45888764
No 130
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.027 Score=48.82 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeeee----------------cCCCCC------CccccccCcccccCccccCCCCC
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVFR----------------DGDDDD------DDELHIRCPECNENGLVKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~----------------~~~~~~------~~~~~~rC~~CnenGl~~C~~C~ 174 (174)
..-|.+|-|++-+.|+.||||...+. .+.+.+ -+-..++|+.|.-.|+.+|..|+
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence 44699999999999999999973221 011100 01126778888888888887774
No 131
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.40 E-value=0.13 Score=37.48 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=35.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHH---------hCCCcEEEEECCCCHHH---------HHHHHHhcCCCCCCcEE-
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ---------SFKVTFYERDVSLHMEF---------RDELWSSLSGRVIPPRL- 85 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~---------~~~v~~~e~Dv~~~~~~---------~~el~~~~g~~~~~P~v- 85 (174)
-+|.|+++ .|++|+++...|. ..++.+..+|+..+... ..++....+ ...+|.+
T Consensus 17 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~ 89 (125)
T cd02951 17 LLLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR-VRFTPTVI 89 (125)
T ss_pred EEEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-CccccEEE
Confidence 45555555 5999998875442 12456677777654211 245666666 7889996
Q ss_pred EECC
Q 047313 86 FIKG 89 (174)
Q Consensus 86 FI~G 89 (174)
|+++
T Consensus 90 ~~~~ 93 (125)
T cd02951 90 FLDP 93 (125)
T ss_pred EEcC
Confidence 4553
No 132
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.16 Score=41.61 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHhCCCcE--EEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313 39 TFEDCRTIRFLLQSFKVTF--YERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~--~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~ 104 (174)
.|++|+++.+.|..++++| +.+|++.-++ +++.++. ...+|.|-.||+.+-+.+.+.+..|+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp-~~~~P~l~~d~~~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISP-GGKPPVLKFDEKWVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCC-CCCCCeEEeCCceeccHHHHHHHHHH
Confidence 5999999999999999885 6777776655 5777776 78899999999999988887666544
No 133
>PRK10767 chaperone protein DnaJ; Provisional
Probab=94.21 E-value=0.041 Score=48.31 Aligned_cols=52 Identities=23% Similarity=0.583 Sum_probs=39.1
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|..|+|+..++...++- .....|+.|+-.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFF---TVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceE---EEEEeCCCCCCceeECCCCCCCCC
Confidence 557999998774 5899999998877655432 135689999998865 788883
No 134
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=94.04 E-value=0.28 Score=33.55 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
.+.|.++..+|+..|++|+.+++..... ......+|.|.+||+.|++...+..+.
T Consensus 17 ~~~~~kv~~~L~elglpye~~~~~~~~~--------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 17 NASCLAVQTFLKMCNLPFNVRCRANAEF--------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCHHHHHHHHHHcCCCcEEEecCCccc--------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 4789999999999999999987533111 111357999999999998877765543
No 135
>PRK14300 chaperone protein DnaJ; Provisional
Probab=94.01 E-value=0.044 Score=48.23 Aligned_cols=52 Identities=23% Similarity=0.581 Sum_probs=38.9
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|+.|+|+.+++...++-. ....|+.|+-.|-+ +|+.|.
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~---~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFT---IEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEE---EEEeCCCCCccceEeCCCCCCCC
Confidence 45788898876 578999999988776543311 35689999999955 788884
No 136
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.00 E-value=1 Score=32.25 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=44.0
Q ss_pred hhhHhhCCC--CCCCcEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCC
Q 047313 12 KGYEEKCPP--GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIP 82 (174)
Q Consensus 12 ~~~~~~~~~--~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~ 82 (174)
..|++.--. .+..-+|.|+++ .|+.|+.+..+|+. .++.+-.+|+..++. +....+ ..++
T Consensus 12 ~~~~~~~~~~~~~~~vlV~F~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~-V~~~ 80 (111)
T cd02963 12 SQYENEIVPKSFKKPYLIKITSD------WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLG-AHSV 80 (111)
T ss_pred HHHHHhhccccCCCeEEEEEECC------ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcC-CccC
Confidence 456555433 233345556665 59999877655532 357788888876554 344455 7889
Q ss_pred cEEE--ECCEEEe
Q 047313 83 PRLF--IKGRYIG 93 (174)
Q Consensus 83 P~vF--I~G~~IG 93 (174)
|.++ .+|+.++
T Consensus 81 Pt~~i~~~g~~~~ 93 (111)
T cd02963 81 PAIVGIINGQVTF 93 (111)
T ss_pred CEEEEEECCEEEE
Confidence 9875 5887553
No 137
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=93.96 E-value=0.17 Score=37.11 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-E--CCEEEe
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-I--KGRYIG 93 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I--~G~~IG 93 (174)
-+|.|+++ .|++|+.+...+.+ ....|..+|+..+++...+.....| ..+|.++ + +|+.++
T Consensus 22 VlV~F~a~------WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g--~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKT------WCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG--GYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEEeCC------cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC--CccceEEEECCCCCCch
Confidence 35556666 49999999887766 3446888888766432222111111 2489884 4 455443
No 138
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.46 E-value=0.73 Score=36.41 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHH--hCCCcEEEEEC
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ--SFKVTFYERDV 62 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~--~~~v~~~e~Dv 62 (174)
+.++..|++|+-. .||+|+++...|. ..++.+..+-+
T Consensus 75 ~~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 75 GNGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence 3455677888876 7999999999997 35666655544
No 139
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=93.38 E-value=0.6 Score=32.98 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=38.1
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC------------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGR 90 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~ 90 (174)
-+|.|.++ .|+.|+.+...|+.. .+.|-.+|...+.. +.+..+ ..++|.++ -+|+
T Consensus 21 vlv~F~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~-v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYAD------WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYR-INKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECC------CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCC-CCcCCEEEEEeCCc
Confidence 45566666 499999998877531 36778888877644 455556 88999885 3554
No 140
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.36 E-value=0.28 Score=34.11 Aligned_cols=52 Identities=10% Similarity=0.145 Sum_probs=37.1
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.+|.|+++ .|+.|..+...|+. .++.+..+|+..++.+ ...++ ..++|.+++
T Consensus 19 ~lv~f~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~~-i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAP------WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL----SGRFF-VTALPTIYH 77 (101)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH----HHHcC-CcccCEEEE
Confidence 56677776 49999998877753 2467788888776653 33445 778999875
No 141
>PLN02395 glutathione S-transferase
Probab=93.27 E-value=0.3 Score=38.62 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=49.1
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
++||+.. -+.+.+++-+|..+|++|+.+.|... .....++.++.- ...+|.|..+|..|.....+.+..
T Consensus 3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQP-FGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 6888853 24579999999999999998877532 122345666654 679999998887776665555543
No 142
>PRK14285 chaperone protein DnaJ; Provisional
Probab=93.26 E-value=0.086 Score=46.32 Aligned_cols=52 Identities=29% Similarity=0.748 Sum_probs=38.0
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++...++- .....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF---RVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCcee---EEeeecCCCCCcccccCCCCCCCC
Confidence 457999988874 5799999998777543331 136789999988854 688774
No 143
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=93.12 E-value=1.3 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=37.7
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I 92 (174)
-++.|+.+ .|+.|+.+...|+. ..+.+..+|+...++ +.+..+ ...+|.+ |.+|+.+
T Consensus 17 v~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFE-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcC-CccccEEEEEECCEEE
Confidence 34455554 69999999888875 246677777765544 444455 7789976 4577654
No 144
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.09 E-value=0.62 Score=31.82 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHh-------C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
+...+++|+++ .|+.|+.+...|+. . ++.+..+|...+.. +.+.++ ...+|.+++
T Consensus 13 ~~~~~i~f~~~------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~-i~~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFYAP------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFG-VSGFPTIKF 75 (102)
T ss_pred CCcEEEEEECC------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCC-CCcCCEEEE
Confidence 44557777777 59999987666643 1 36677888766544 445556 788998843
No 145
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.08 E-value=0.8 Score=30.68 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=35.5
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.-+++|+++ .|+.|..+...|.. . ++.+..+|...+. ++.+.++ ...+|.+++
T Consensus 17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYG-VRGYPTIKL 77 (101)
T ss_pred cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCC-CCCCCEEEE
Confidence 556666665 69999998887754 3 3556667765533 3455556 788998854
No 146
>PRK10357 putative glutathione S-transferase; Provisional
Probab=93.01 E-value=0.22 Score=39.02 Aligned_cols=64 Identities=16% Similarity=-0.011 Sum_probs=44.6
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV 98 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del 98 (174)
.+|+.. .+++.++++.+|+.+||+|+.+++..... ..++.++.. ...+|.+.. +|..|-....+
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNP-LGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCC-ccCCCeEEeCCCCeeecHHHH
Confidence 578876 58999999999999999999988754211 123444443 678999985 56555443333
No 147
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=92.80 E-value=0.95 Score=30.43 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313 35 GIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 35 ~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e 103 (174)
+.....|+|-++..+|+-.+++|+.+... ++. .+....+|.|..+|+.|+|++.+.+..+
T Consensus 11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~--------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 11 GLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW--------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC--------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 44556799999999999999999665332 211 1114579999999999999988877644
No 148
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=92.80 E-value=0.48 Score=37.66 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI 87 (174)
++||..+ .+.+.+|+-+|+.+||+|+.++|... +....++.++.- ...+|.+..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP-~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISP-NNKIPAIVD 57 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCc-CCCCCEEEe
Confidence 4688764 47899999999999999998877543 223456766654 679999987
No 149
>PRK14284 chaperone protein DnaJ; Provisional
Probab=92.78 E-value=0.1 Score=46.25 Aligned_cols=52 Identities=31% Similarity=0.714 Sum_probs=36.8
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++...+.- .....|+.|+-.|-+ +|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFF---SMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceE---EEEEECCCCCCCCcccCCcCCCCC
Confidence 457888887764 5799999997776543321 135789999888854 687773
No 150
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.73 E-value=1.2 Score=34.99 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=42.5
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD 96 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d 96 (174)
..|||+... +.|+.|..+...|+. + .+.|..+|+... ++...++ ...+|.+ |.+|+.++.+.
T Consensus 84 ~~VVV~Fya-----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~-v~~vPTlllyk~G~~v~~~v 152 (175)
T cd02987 84 TTVVVHIYE-----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD-TDALPALLVYKGGELIGNFV 152 (175)
T ss_pred cEEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC-CCCCCEEEEEECCEEEEEEe
Confidence 356665553 369999988877754 2 467888888642 5666666 7889977 55998775443
Q ss_pred h
Q 047313 97 E 97 (174)
Q Consensus 97 e 97 (174)
.
T Consensus 153 G 153 (175)
T cd02987 153 R 153 (175)
T ss_pred c
Confidence 3
No 151
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.63 E-value=0.62 Score=35.94 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEEEECCEEEecc---
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRLFIKGRYIGGA--- 95 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~vFI~G~~IGG~--- 95 (174)
...++++|-++ +|.=|..--+.|+.+|+.+..++... ...+++++|- ..+-=+..|+|.||=|.
T Consensus 24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 45688999987 89999999999999999998887744 3456665652 34557889999999775
Q ss_pred chhhhhhhcCc
Q 047313 96 DEVVGLHEQGK 106 (174)
Q Consensus 96 del~~l~e~G~ 106 (174)
+++.+|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 66767766655
No 152
>PRK14287 chaperone protein DnaJ; Provisional
Probab=92.62 E-value=0.11 Score=45.69 Aligned_cols=55 Identities=24% Similarity=0.527 Sum_probs=37.9
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|..|+|+..++......-+ ......|+.|+-.|.+ +|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 45789998876 4679999999877654322100 0124689999999965 688874
No 153
>PRK14298 chaperone protein DnaJ; Provisional
Probab=92.51 E-value=0.11 Score=45.76 Aligned_cols=55 Identities=25% Similarity=0.587 Sum_probs=37.3
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++....... .......|+.|+-.|-+ +|+.|.
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 457999999875 67999999987764432100 01135788999888844 688773
No 154
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.29 Score=38.74 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.7
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEECCE-EEeccchhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGR-YIGGADEVV 99 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~G~-~IGG~del~ 99 (174)
++|... ..+++.+++-+|..+|++|+.+.|.... ....++..+.. ...+|.|..++- .|-....|.
T Consensus 2 ~L~~~~------~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP-~gkVPvL~~~~~~~l~ES~AI~ 69 (211)
T COG0625 2 KLYGSP------TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNP-LGKVPALVDDDGEVLTESGAIL 69 (211)
T ss_pred eeecCC------CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCC-CCCCCEEeeCCCCeeecHHHHH
Confidence 467765 3499999999999999999999887664 44566767665 789999998774 444443333
No 155
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=92.41 E-value=0.66 Score=34.51 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=43.0
Q ss_pred CCCcEEEEEeecCCCCCCCh--hHH----------HHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EE
Q 047313 22 GEDSVIFYTTSLRGIRKTFE--DCR----------TIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~--~C~----------~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI 87 (174)
++..||+|..+|- |+ +|+ .+..+|+..++.+-.+|+..++++ .+.+| -..+|+| |.
T Consensus 26 ~~~~vvv~f~a~w-----c~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L----a~~~~-I~~iPTl~lfk 95 (120)
T cd03065 26 YDVLCLLYHEPVE-----SDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV----AKKLG-LDEEDSIYVFK 95 (120)
T ss_pred CCceEEEEECCCc-----CChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH----HHHcC-CccccEEEEEE
Confidence 3446777777752 43 475 345566677899999999887664 44456 7788887 67
Q ss_pred CCEEEe
Q 047313 88 KGRYIG 93 (174)
Q Consensus 88 ~G~~IG 93 (174)
||+.+.
T Consensus 96 ~G~~v~ 101 (120)
T cd03065 96 DDEVIE 101 (120)
T ss_pred CCEEEE
Confidence 998664
No 156
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=92.18 E-value=0.98 Score=30.77 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhCCCcEEEEECCCCH--HH-HHHHHHhc---C-CCCCCcEEEECCEEEeccchh
Q 047313 41 EDCRTIRFLLQSFKVTFYERDVSLHM--EF-RDELWSSL---S-GRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 41 ~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~-~~el~~~~---g-~~~~~P~vFI~G~~IGG~del 98 (174)
+.|.+++.+|...|++|+.+.|.... .. ..+..... + ...++|.+.++|..+.-...+
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AI 74 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAI 74 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHH
Confidence 68899999999999999988775432 11 11221111 1 256899999888766444333
No 157
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.15 E-value=1.1 Score=31.44 Aligned_cols=56 Identities=11% Similarity=0.281 Sum_probs=35.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----CC---CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK---VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~---v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I 92 (174)
-|+.|+++ -|+.|+.+...|+. ++ +.|..+|+. +++ +.+..+ ...+|.+ |-+|+.+
T Consensus 20 vvv~F~a~------wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~-v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQE------WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYR-GKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECC------cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcC-CCcCcEEEEEECCEEE
Confidence 44555555 49999988877754 32 456777776 332 344455 7788866 4477643
No 158
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=92.14 E-value=0.18 Score=33.42 Aligned_cols=37 Identities=27% Similarity=0.716 Sum_probs=24.9
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENG 166 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenG 166 (174)
...|..|.|.+++ +|+.|+|+.+++ + ..+|+.|+=+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i--~--------~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII--E--------KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE---T--------SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE--C--------CCCCCCCCCcC
Confidence 4579999998876 799999998885 1 46788887654
No 159
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.12 E-value=1.7 Score=31.78 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=48.5
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG 93 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG 93 (174)
...+++||-=|+ +|+=...|..-|+.. .+++..+||-.++..-.++.+.+|=...-||+++ ||+.+-
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 556789998885 699999988877652 3899999999999999999999986678899964 888764
Q ss_pred cc
Q 047313 94 GA 95 (174)
Q Consensus 94 G~ 95 (174)
..
T Consensus 93 ~a 94 (105)
T PF11009_consen 93 HA 94 (105)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 160
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.11 E-value=1.1 Score=31.22 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=37.1
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKG 89 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G 89 (174)
.-+|.|+++ .|+.|+.+...++. + .+.+-.+|...+++ +.+..+ ...+|+++ .+|
T Consensus 21 ~v~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAP------WCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQAN-IRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcC-CCcccEEEEEcCC
Confidence 455566666 59999988777753 2 36788889876554 344445 78899874 355
No 161
>PTZ00057 glutathione s-transferase; Provisional
Probab=92.10 E-value=0.93 Score=35.90 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=47.6
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH-HH--HHHHH-hcCCCCCCcEEEECCEEEeccchhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME-FR--DELWS-SLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~-~~--~el~~-~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
++++||..+. -+.+..++-+|+..||+|+.+.+....+ +. +++.. .......+|.+.+||..|.....+.
T Consensus 3 ~~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 3 EEIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 4488998763 4788899999999999999998754321 11 11111 1233678999999997666554444
Q ss_pred h
Q 047313 100 G 100 (174)
Q Consensus 100 ~ 100 (174)
.
T Consensus 77 ~ 77 (205)
T PTZ00057 77 R 77 (205)
T ss_pred H
Confidence 3
No 162
>PRK14286 chaperone protein DnaJ; Provisional
Probab=92.10 E-value=0.12 Score=45.58 Aligned_cols=52 Identities=27% Similarity=0.602 Sum_probs=36.8
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcc---ccCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL---VKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl---~~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++...++- .....|+.|+-.|. .+|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF---SVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceE---EEEEeCCCCCceeeEecccCCCCC
Confidence 457999999875 6899999998776554321 13568888887774 3677773
No 163
>PRK14288 chaperone protein DnaJ; Provisional
Probab=92.09 E-value=0.12 Score=45.37 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=36.8
Q ss_pred CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCCCccccccCcccccCcc---ccCCCCC
Q 047313 120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL---VKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl---~~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..+....++- .....|+.|+-.|. .+|+.|.
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM---SFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE---EEEEecCCCCCCceEccccCccCC
Confidence 447889988774 5699999998776555431 13568888888884 4677773
No 164
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=92.07 E-value=0.5 Score=31.68 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCC-CCCcEEEEC-CEEEeccc
Q 047313 42 DCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGR-VIPPRLFIK-GRYIGGAD 96 (174)
Q Consensus 42 ~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~-~~~P~vFI~-G~~IGG~d 96 (174)
.+..++.+|+..|++|+.+.++. .+...+++.+..- . ..+|.+.++ |..+-..-
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p-~~g~vP~l~~~~~~~l~es~ 68 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP-MFGKVPALEDGDGFVLTESN 68 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT-TSSSSSEEEETTTEEEESHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccc-ccceeeEEEECCCCEEEcHH
Confidence 88999999999999998886653 3333366666654 5 799999999 87765443
No 165
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.00 E-value=0.34 Score=36.45 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCcEEEEECCCCHHH-------HHHHHHhcCCCCCCcEEEECCEEE--eccchhhhh
Q 047313 44 RTIRFLLQSFKVTFYERDVSLHMEF-------RDELWSSLSGRVIPPRLFIKGRYI--GGADEVVGL 101 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv~~~~~~-------~~el~~~~g~~~~~P~vFI~G~~I--GG~del~~l 101 (174)
..+...|+++|+.+...+++.++.. .+.|.. .| ...+|.++|||+.+ |.|=...+|
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G-~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EG-AEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H--GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cC-cccCCEEEECCEEEEecCCCCHHHH
Confidence 4556778899999999999987553 232322 24 88999999999875 666444333
No 166
>PRK14301 chaperone protein DnaJ; Provisional
Probab=91.99 E-value=0.12 Score=45.58 Aligned_cols=52 Identities=31% Similarity=0.784 Sum_probs=36.6
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..+....++- .....|+.|+-.|-+ +|+.|.
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFF---QIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeE---EEEEeCCCCCceeeecCCCCCCCC
Confidence 457888888775 5799999998776544331 136788888888754 677773
No 167
>PRK14282 chaperone protein DnaJ; Provisional
Probab=91.95 E-value=0.14 Score=45.02 Aligned_cols=55 Identities=22% Similarity=0.506 Sum_probs=36.4
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++......- -......|+.|+-.|.+ +|+.|.
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 457888888764 67999999987764331100 01125689999888855 577773
No 168
>PRK14291 chaperone protein DnaJ; Provisional
Probab=91.92 E-value=0.14 Score=45.26 Aligned_cols=52 Identities=27% Similarity=0.804 Sum_probs=38.3
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc--cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV--KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~--~C~~C~ 174 (174)
...|..|.|.+ ...|+.|+|+..++....+. .....|+.|+-.|.+ +|+.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFF---RISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceE---EEEecCCCCCCceEEccCCCCCC
Confidence 45799999877 56799999998877664331 136789999988854 577773
No 169
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=91.90 E-value=0.94 Score=31.06 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=34.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCC-CHHHHHHHHHhcCCCCCCcEEEE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F----KVTFYERDVSL-HMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~----~v~~~e~Dv~~-~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.-++.|+++ .|+.|+.....+.. + ++.+-.+|... ++.+ .+.++ ...+|.+++
T Consensus 20 ~~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~-i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL----AKKYG-VSGFPTLKF 81 (105)
T ss_pred cEEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh----HHhCC-CCCcCEEEE
Confidence 346666666 59999988777744 2 35677777766 4443 33345 678998864
No 170
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.36 Score=41.56 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=51.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD 96 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d 96 (174)
+|+||..+ +.|+.|....-+|+.. ++..-.+|+..++.+... +| ..++|.| |++|+.|-||-
T Consensus 45 PVlV~fWa-----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fg-iqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 45 PVLVDFWA-----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FG-VQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred CeEEEecC-----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hC-cCcCCeEEEeeCCcCccccC
Confidence 45555544 3599999999999863 244567778777765444 45 8889988 79999987774
Q ss_pred hhhhhhhcCchhHHhhc
Q 047313 97 EVVGLHEQGKLKKLLEG 113 (174)
Q Consensus 97 el~~l~e~G~L~~~L~~ 113 (174)
-. ..+-.|+++|+.
T Consensus 115 G~---qPesqlr~~ld~ 128 (304)
T COG3118 115 GA---QPESQLRQFLDK 128 (304)
T ss_pred CC---CcHHHHHHHHHH
Confidence 43 233345555544
No 171
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.74 E-value=1.1 Score=34.63 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=41.0
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHh----C---CCcEEEEECCCCHHHHHHHHHhc-CCCCCCcEE--EECCEEEec
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----F---KVTFYERDVSLHMEFRDELWSSL-SGRVIPPRL--FIKGRYIGG 94 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~~~~~~el~~~~-g~~~~~P~v--FI~G~~IGG 94 (174)
||.|.++ .|+.|+.+...|+. + ++.+-.+|+..+++..+.+.-.. -+...+|++ |.+|+.++-
T Consensus 51 vV~Fya~------wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTT------WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 6666666 59999998877743 2 47889999988876655442111 012348876 568886643
No 172
>PRK14294 chaperone protein DnaJ; Provisional
Probab=91.69 E-value=0.16 Score=44.65 Aligned_cols=52 Identities=27% Similarity=0.617 Sum_probs=36.9
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++...++- .....|+.|+-.|-+ +|+.|.
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF---SIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE---EEEeeCCCCCCcCeecCcCCCCCC
Confidence 457888888775 5799999997776443321 136788888888855 677773
No 173
>PRK14289 chaperone protein DnaJ; Provisional
Probab=91.63 E-value=0.15 Score=45.07 Aligned_cols=55 Identities=29% Similarity=0.611 Sum_probs=37.3
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|..|+|+..++..-...-+ ......|+.|+-.|-+ +|+.|.
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence 457888988775 679999999877654321000 0125789999888854 788773
No 174
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.62 E-value=1.4 Score=30.26 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=34.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
-+++|.++ .|+.|+.....|.. ..+.+..+|+..+++ +.+..+ ...+|.+++
T Consensus 21 vlv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~-i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYG-VRGFPTIKV 78 (103)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCC-CCccCEEEE
Confidence 34455554 69999998877754 246678888866554 344445 778998743
No 175
>PRK14280 chaperone protein DnaJ; Provisional
Probab=91.58 E-value=0.18 Score=44.48 Aligned_cols=55 Identities=31% Similarity=0.650 Sum_probs=37.3
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|+.|+|+..++......-+ ......|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 45799999987 4679999999877654321100 1135689999888854 688773
No 176
>PRK11752 putative S-transferase; Provisional
Probab=91.41 E-value=0.85 Score=37.96 Aligned_cols=73 Identities=10% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECC--
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKG-- 89 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G-- 89 (174)
|.+.+.++||+. ..+++.+|+-+|+.. +++|+.+.|.. .+....++.++.- ..++|.+..++
T Consensus 39 ~~~~~~~~Ly~~-------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP-~GkVP~Lv~~dg~ 110 (264)
T PRK11752 39 PVGKHPLQLYSL-------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINP-NSKIPALLDRSGN 110 (264)
T ss_pred CCCCCCeEEecC-------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCC-CCCCCEEEeCCCC
Confidence 556668999985 369999999999986 88888766643 2223456666654 67899998753
Q ss_pred --EEEeccchhhh
Q 047313 90 --RYIGGADEVVG 100 (174)
Q Consensus 90 --~~IGG~del~~ 100 (174)
..|-....|.+
T Consensus 111 ~~~~L~ES~AIl~ 123 (264)
T PRK11752 111 PPIRVFESGAILL 123 (264)
T ss_pred CCeEEEcHHHHHH
Confidence 34544444433
No 177
>PRK14295 chaperone protein DnaJ; Provisional
Probab=91.38 E-value=0.16 Score=45.00 Aligned_cols=52 Identities=31% Similarity=0.810 Sum_probs=36.9
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++...+. .....+|+.|+-.|.+ +|+.|.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGG---FSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecc---eEEEEecCCCcceeEEeccCCCCCC
Confidence 456888888774 679999999776654322 1246789999888865 587773
No 178
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=91.32 E-value=1.2 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR 90 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~ 90 (174)
.-+|.|+++ .|+.|+.+...++.. .+.+-.+|+..++. +.+..+ -..+|++++ +|+
T Consensus 20 ~~~v~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~ 83 (101)
T cd03003 20 IWFVNFYSP------RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQG-VNSYPSLYVFPSGM 83 (101)
T ss_pred eEEEEEECC------CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcC-CCccCEEEEEcCCC
Confidence 345556665 599999988887542 35677888877654 333445 678898843 564
No 179
>PRK14297 chaperone protein DnaJ; Provisional
Probab=91.28 E-value=0.18 Score=44.49 Aligned_cols=55 Identities=20% Similarity=0.517 Sum_probs=37.2
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++......- ......+|+.|+-.|.+ +|+.|.
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 457999988875 57999999987765431100 01135789999888855 687773
No 180
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=91.16 E-value=0.2 Score=43.68 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=37.4
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|..|+|+..++......- .......|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence 45799999887 567999999987765443100 00124689999888864 588773
No 181
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.15 E-value=1.2 Score=31.39 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
++.-+|.|+++| |+.|+.....|+. .++.+..+|.. .++ .+.+..+ ...+|++++
T Consensus 18 g~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~-V~~~PT~~l 78 (100)
T cd02999 18 EDYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYG-VVGFPTILL 78 (100)
T ss_pred CCEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcC-CeecCEEEE
Confidence 344566666664 9999999887755 24667777776 444 3445556 788998753
No 182
>PRK14290 chaperone protein DnaJ; Provisional
Probab=91.05 E-value=0.21 Score=43.85 Aligned_cols=55 Identities=22% Similarity=0.517 Sum_probs=35.5
Q ss_pred CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCC-CccccccCcccccCc---cccCCCCC
Q 047313 120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENG---LVKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenG---l~~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..+...-...- ......+|+.|+-.| ..+|+.|.
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 456888888775 57999999976654332110 000136799998888 44788773
No 183
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=90.94 E-value=0.68 Score=39.27 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=48.1
Q ss_pred CcEEEEEee-cCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313 24 DSVIFYTTS-LRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99 (174)
Q Consensus 24 ~~VvlYtts-l~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~ 99 (174)
+.|-+|.-+ ...+.---|+|-++..+|+.++|+|+.++-++ +.++ ...++|-|-+||++|.+.+-+.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rS-r~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRS-RNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeec-cCCCcceEEeCCeeccccHHHH
Confidence 445555543 12223345899999999999999999998743 2222 2569999999999999887653
No 184
>PRK14296 chaperone protein DnaJ; Provisional
Probab=90.90 E-value=0.19 Score=44.36 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=36.1
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..++..-...- .......|+.|+=.|-+ +|+.|.
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 457999998875 56999999987765432100 00024578888877755 577773
No 185
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=90.83 E-value=0.88 Score=31.78 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=34.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
-++.|.++ .|+.|+.+...|+.. .+.+-.+|+..+. ..++.+..+ ...+|.+++
T Consensus 21 ~lv~f~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~-i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAP------WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYG-VQGFPTLKV 80 (109)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcC-CCcCCEEEE
Confidence 56666666 599999887766542 3456667776521 123444556 788998864
No 186
>PRK14279 chaperone protein DnaJ; Provisional
Probab=90.74 E-value=0.19 Score=44.54 Aligned_cols=51 Identities=24% Similarity=0.633 Sum_probs=35.4
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFC 173 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C 173 (174)
...|..|.|.+. ..|+.|+|+..++...+.- .....|+.|+-.|.+ +|+.|
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF---GFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEecce---EEEEecCCCCceeEEeCCcCCCC
Confidence 457888988875 5699999997776544321 135788888877743 57666
No 187
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.67 E-value=0.84 Score=30.37 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=23.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVS 63 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~ 63 (174)
|++|+.. .||+|..+...|+.. ++.++.+.+.
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 4567766 799999998888763 4667766653
No 188
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=90.65 E-value=0.93 Score=31.13 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=36.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I 92 (174)
-++.|+++ .|+.|+.....|+. + .+.+-.+|.+.+.. +.+..+ ...+|.++ -+|+.+
T Consensus 19 ~lv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAP------WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQ-VRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECC------CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcC-CCcCCEEEEEeCCCee
Confidence 55566665 59999987666633 2 46677888776654 333445 67899875 366533
No 189
>PRK14279 chaperone protein DnaJ; Provisional
Probab=90.64 E-value=0.22 Score=44.24 Aligned_cols=38 Identities=24% Similarity=0.727 Sum_probs=29.7
Q ss_pred CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|..++. ..+|+.|+-.|.+
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~v 238 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeEE
Confidence 4579999998765 799999998872 3568999887765
No 190
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=90.64 E-value=0.19 Score=40.40 Aligned_cols=27 Identities=22% Similarity=0.795 Sum_probs=22.9
Q ss_pred CCCCCCCCCcceEe-----CCCCCCCeeeeec
Q 047313 120 DCSCNGCGNIRFVL-----CSNCSGSCKVFRD 146 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~-----C~~C~Gs~k~~~~ 146 (174)
...|..|+|.+++. |..|+|+.++...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 56899999999986 9999999877643
No 191
>PRK14293 chaperone protein DnaJ; Provisional
Probab=90.59 E-value=0.21 Score=43.96 Aligned_cols=55 Identities=29% Similarity=0.572 Sum_probs=37.1
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|..|+|+..++..-...-+ .....+|+.|+-.|-+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG 207 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence 457888888664 569999999877644321000 1124789999988876 787773
No 192
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=90.53 E-value=2 Score=30.73 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=35.7
Q ss_pred EEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCCHH--HHHHH-HHhcCCCCCCcEEEECC
Q 047313 27 IFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLHME--FRDEL-WSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~~~--~~~el-~~~~g~~~~~P~vFI~G 89 (174)
+||++.. .|.-| .....+|+. ..+.|+.+||...++ ..+++ .++...---.|.|.|+|
T Consensus 1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~ 75 (93)
T PF07315_consen 1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVIND 75 (93)
T ss_dssp EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECC
Confidence 4677653 46555 445555543 346689999975533 33444 34444355679999999
Q ss_pred EEEec
Q 047313 90 RYIGG 94 (174)
Q Consensus 90 ~~IGG 94 (174)
++||.
T Consensus 76 eiV~E 80 (93)
T PF07315_consen 76 EIVAE 80 (93)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99974
No 193
>PRK14282 chaperone protein DnaJ; Provisional
Probab=90.52 E-value=0.35 Score=42.46 Aligned_cols=39 Identities=26% Similarity=0.671 Sum_probs=30.6
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
...|..|.|.+.+ +|+.|+|+.++. .-+|+.|+..|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCceeEE
Confidence 3479999999865 699999998772 35699999888653
No 194
>PRK14285 chaperone protein DnaJ; Provisional
Probab=90.51 E-value=0.22 Score=43.78 Aligned_cols=38 Identities=29% Similarity=0.691 Sum_probs=28.5
Q ss_pred CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|..++. ..+|+.|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCEE
Confidence 3468999998754 799999987762 3568888888765
No 195
>PRK14276 chaperone protein DnaJ; Provisional
Probab=90.46 E-value=0.25 Score=43.66 Aligned_cols=55 Identities=24% Similarity=0.567 Sum_probs=35.8
Q ss_pred CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+..+.......- -......|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence 457999988874 67999999977764422100 00124678888877754 577773
No 196
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.53 Score=38.00 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=48.2
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC--CCC-HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV--SLH-MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv--~~~-~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
.+-++|+- | |.+|.+ +||-.|.-++|+|+.+-| ... .++-.++++..- ..+||.+.|||..|-..-.+.+
T Consensus 4 ~KpiLYSY-W---rSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNP-m~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 4 AKPILYSY-W---RSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINP-MEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred ccchhhhh-h---cccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCc-hhhCCeEEECCEEeehHHHHHH
Confidence 35667763 4 346765 566666667777666655 333 445557888765 8899999999998876555544
Q ss_pred hhh
Q 047313 101 LHE 103 (174)
Q Consensus 101 l~e 103 (174)
..+
T Consensus 77 YLe 79 (217)
T KOG0868|consen 77 YLE 79 (217)
T ss_pred HHH
Confidence 443
No 197
>PRK14280 chaperone protein DnaJ; Provisional
Probab=90.40 E-value=0.23 Score=43.76 Aligned_cols=38 Identities=32% Similarity=0.856 Sum_probs=30.0
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|+.++. ..+|+.|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceEE
Confidence 3579999998754 799999998762 3569999888765
No 198
>PRK14278 chaperone protein DnaJ; Provisional
Probab=90.25 E-value=0.29 Score=43.17 Aligned_cols=55 Identities=25% Similarity=0.505 Sum_probs=35.5
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCC-CCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDD-DDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~-~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|+.|+|+..++...... ........|+.|+-.|-+ +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 45799998876 46799999997765433110 001124678888888743 677773
No 199
>PRK10542 glutathionine S-transferase; Provisional
Probab=90.07 E-value=0.73 Score=35.90 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhh
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVG 100 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~ 100 (174)
.||++. -+.+.+++-+|+.+||+|+.+.|.... ...+++.++.- ...+|.+.+ +|..|-....+.+
T Consensus 2 ~l~~~~-------~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vPvL~~~~g~~l~eS~aI~~ 71 (201)
T PRK10542 2 KLFYKP-------GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINP-KGQVPALLLDDGTLLTEGVAIMQ 71 (201)
T ss_pred ceeecc-------cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCc-CCCCCeEEeCCCcEeecHHHHHH
Confidence 467654 235778889999999999888775432 12245666654 678999987 6666655544444
No 200
>PRK14301 chaperone protein DnaJ; Provisional
Probab=90.02 E-value=0.26 Score=43.40 Aligned_cols=37 Identities=35% Similarity=0.883 Sum_probs=28.9
Q ss_pred CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..|..|.|.+.+ +|+.|+|+.++. ..+|+.|+-.|.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCcee
Confidence 469999998754 799999998772 3568999877765
No 201
>PRK14296 chaperone protein DnaJ; Provisional
Probab=90.01 E-value=0.24 Score=43.63 Aligned_cols=38 Identities=29% Similarity=0.691 Sum_probs=27.4
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+.+ +|+.|+|..++. ..+|+.|+-.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----------KNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------cccccCCCCceEE
Confidence 3468888888754 788888887772 3558888877754
No 202
>PRK14286 chaperone protein DnaJ; Provisional
Probab=89.83 E-value=0.28 Score=43.16 Aligned_cols=38 Identities=29% Similarity=0.776 Sum_probs=28.9
Q ss_pred CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
..|..|.|.+.+ +|+.|+|..++. ..+|+.|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcEEe
Confidence 569999998765 799999988772 34688888877653
No 203
>PRK14277 chaperone protein DnaJ; Provisional
Probab=89.74 E-value=0.31 Score=43.13 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|..|+|+..++......-+ ......|+.|+-.|.+ +|+.|.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence 45688888766 4679999999776543321000 0124578888888755 577773
No 204
>PRK14300 chaperone protein DnaJ; Provisional
Probab=89.74 E-value=0.28 Score=43.21 Aligned_cols=38 Identities=21% Similarity=0.703 Sum_probs=27.3
Q ss_pred CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+++ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceEE
Confidence 3468888888765 688888887662 3558888877764
No 205
>PRK10767 chaperone protein DnaJ; Provisional
Probab=89.72 E-value=0.32 Score=42.67 Aligned_cols=37 Identities=30% Similarity=0.723 Sum_probs=28.8
Q ss_pred CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..|..|.|.+.+ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 207 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGRV 207 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCceE
Confidence 469999998866 599999998762 3568888887765
No 206
>PRK14276 chaperone protein DnaJ; Provisional
Probab=89.72 E-value=0.27 Score=43.42 Aligned_cols=38 Identities=24% Similarity=0.650 Sum_probs=29.9
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|+.++. ..+|+.|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceEE
Confidence 3579999998754 799999998772 3569999888765
No 207
>PRK14298 chaperone protein DnaJ; Provisional
Probab=89.67 E-value=0.29 Score=43.23 Aligned_cols=37 Identities=38% Similarity=0.843 Sum_probs=29.6
Q ss_pred CCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 121 CSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 121 ~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..|..|.|.+.+ +|+.|+|..+.. ..+|+.|+-.|.+
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 210 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGKV 210 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccEE
Confidence 579999999864 799999997762 3569999988765
No 208
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.54 E-value=2.4 Score=33.94 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=40.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~de 97 (174)
.|||+... ..|+.|..+..+|+.. .+.|..+|+.. ....++ ...+|.|+ -+|+.++-+-.
T Consensus 104 ~VVV~Fya-----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~-i~~lPTlliyk~G~~v~~ivG 170 (192)
T cd02988 104 WVVVHLYK-----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYP-DKNLPTILVYRNGDIVKQFIG 170 (192)
T ss_pred EEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCC-CCCCCEEEEEECCEEEEEEeC
Confidence 45554433 3699999998888663 46788888742 124455 78899884 58886654443
Q ss_pred h
Q 047313 98 V 98 (174)
Q Consensus 98 l 98 (174)
+
T Consensus 171 ~ 171 (192)
T cd02988 171 L 171 (192)
T ss_pred c
Confidence 3
No 209
>PRK14284 chaperone protein DnaJ; Provisional
Probab=89.40 E-value=0.29 Score=43.37 Aligned_cols=38 Identities=24% Similarity=0.606 Sum_probs=28.4
Q ss_pred CCCCCCCCCcce-----------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRF-----------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+. .+|+.|+|..++. ...|+.|+-.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCccee
Confidence 346999999887 5799999986652 3568888877765
No 210
>PRK14277 chaperone protein DnaJ; Provisional
Probab=89.29 E-value=0.33 Score=42.98 Aligned_cols=38 Identities=26% Similarity=0.685 Sum_probs=29.4
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|+.++. ..+|+.|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcEE
Confidence 3469999999754 699999998772 3469999988865
No 211
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=89.25 E-value=1.2 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHh----C--CCcEEEEECCCCHHHH---HHHHHhcCCCC-CCcEEEE
Q 047313 40 FEDCRTIRFLLQS----F--KVTFYERDVSLHMEFR---DELWSSLSGRV-IPPRLFI 87 (174)
Q Consensus 40 c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~---~el~~~~g~~~-~~P~vFI 87 (174)
|+.|+.+.-+|+. + ++.|..+|+...+..+ .++....+ -. .+|.+.+
T Consensus 40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-I~~~iPT~~~ 96 (119)
T cd02952 40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-LTTGVPTLLR 96 (119)
T ss_pred CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC-cccCCCEEEE
Confidence 9999987766643 3 4789999986543221 33444444 44 7999864
No 212
>PRK14278 chaperone protein DnaJ; Provisional
Probab=89.20 E-value=0.32 Score=42.91 Aligned_cols=38 Identities=32% Similarity=0.718 Sum_probs=30.1
Q ss_pred CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+. .+|+.|+|..++. ..+|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCceeE
Confidence 346999999875 4799999998872 3569999988865
No 213
>PRK14297 chaperone protein DnaJ; Provisional
Probab=89.07 E-value=0.35 Score=42.68 Aligned_cols=38 Identities=34% Similarity=0.823 Sum_probs=29.8
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|..++. ..+|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeEE
Confidence 3569999999765 799999998762 3568999888764
No 214
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=88.97 E-value=0.19 Score=42.74 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEE
Q 047313 9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vF 86 (174)
.|...++...||.. .|+|.-+. --..++|+..+..+||.|++.||+-- +..-..+.++.- ...+|++.
T Consensus 13 ~~~~~~ka~~~~e~---~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp-~gevPVl~ 82 (325)
T KOG4420|consen 13 APEAASKAHWPRES---LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNP-GGEVPVLI 82 (325)
T ss_pred CchhhcCCCCchhc---ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecCC-CCCCceEe
Confidence 34455655555554 88998763 35689999999999999999999642 222233444443 67899876
Q ss_pred ECCEEEeccchhhhhhhc
Q 047313 87 IKGRYIGGADEVVGLHEQ 104 (174)
Q Consensus 87 I~G~~IGG~del~~l~e~ 104 (174)
-+...|-++.++....|+
T Consensus 83 ~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 83 HGDNIISDYTQIIDYVER 100 (325)
T ss_pred cCCeecccHHHHHHHHHH
Confidence 666778899888888776
No 215
>PRK14288 chaperone protein DnaJ; Provisional
Probab=88.89 E-value=0.4 Score=42.20 Aligned_cols=38 Identities=24% Similarity=0.656 Sum_probs=27.8
Q ss_pred CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+.+ +|+.|+|..++. .-.|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcceE
Confidence 3468889888865 588888887762 3458888877754
No 216
>PRK14292 chaperone protein DnaJ; Provisional
Probab=88.75 E-value=0.36 Score=42.38 Aligned_cols=54 Identities=26% Similarity=0.582 Sum_probs=35.6
Q ss_pred CCCCCCCCCcc-------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCC
Q 047313 120 DCSCNGCGNIR-------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFC 173 (174)
Q Consensus 120 ~~~C~~Cgg~r-------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C 173 (174)
...|..|.|.+ ...|..|+|+..+...-...-+ ......|+.|+-.|.. +|+.|
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 203 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVC 203 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCC
Confidence 45799998876 4679999999766533211000 0024688899888865 68777
No 217
>PRK14283 chaperone protein DnaJ; Provisional
Probab=88.67 E-value=0.38 Score=42.36 Aligned_cols=55 Identities=24% Similarity=0.584 Sum_probs=36.9
Q ss_pred CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCC-CCccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDD-DDDELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~-~~~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+ ...|..|+|+..++...... ........|+.|+-.|.. +|..|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence 45688888765 46799999998776443210 001125689999988866 788873
No 218
>PRK14294 chaperone protein DnaJ; Provisional
Probab=88.56 E-value=0.4 Score=42.09 Aligned_cols=37 Identities=35% Similarity=0.780 Sum_probs=28.6
Q ss_pred CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..|..|.|.+.+ +|+.|+|..+.. ...|+.|+-.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceEe
Confidence 469999998754 699999998762 3568999877765
No 219
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=88.50 E-value=2.1 Score=30.35 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=35.4
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCC-HHHHHHHHHhcCCCCCCcEEE
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVSLH-MEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~~~-~~~~~el~~~~g~~~~~P~vF 86 (174)
..-++.|.++ .|+.|+.+...|+.. ++.+-.+|+..+ ..+ ..+..+ ...+|.++
T Consensus 22 k~vlv~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~~-v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAP------WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEELQ-LKSFPTIL 83 (109)
T ss_pred CCEEEEEECC------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhcC-CCcCCEEE
Confidence 4566777776 499999998877552 466777777652 221 223345 77899884
No 220
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=88.45 E-value=0.44 Score=46.22 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=37.3
Q ss_pred EEeccchhhhhhhcCchhHHhhcCCC-----CCCCCCCCCCCCcce------------EeCCCCCCCeee
Q 047313 91 YIGGADEVVGLHEQGKLKKLLEGIPR-----NLSDCSCNGCGNIRF------------VLCSNCSGSCKV 143 (174)
Q Consensus 91 ~IGG~del~~l~e~G~L~~~L~~~~~-----~~~~~~C~~Cgg~r~------------v~C~~C~Gs~k~ 143 (174)
|.|=||++.+|+.+-...+ ..++.+ +...+.|++|+|.++ |||+.|+|.+..
T Consensus 697 Ytg~Fd~IR~lFA~tpeAK-~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 697 YTGVFDDIRELFAGTPEAK-ARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred hhcchHHHHHHHhcChHHH-HcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 7778899988887644333 333333 335678999999886 789999998654
No 221
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.42 E-value=1.5 Score=33.17 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-E--CCEEEe
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-I--KGRYIG 93 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I--~G~~IG 93 (174)
-||.|+++ .|+.|..+...|.. + .+.|..+|+..+. ...+.+.++ ...+|.++ + +|+.++
T Consensus 23 vvV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~-V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 23 TLVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYR-VDGIPHFVFLDREGNEEG 91 (142)
T ss_pred EEEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcC-CCCCCEEEEECCCCCEEE
Confidence 34455555 49999988877764 2 3567777875432 123444556 78899885 5 466443
No 222
>PRK14295 chaperone protein DnaJ; Provisional
Probab=88.41 E-value=0.42 Score=42.38 Aligned_cols=38 Identities=21% Similarity=0.511 Sum_probs=29.2
Q ss_pred CCCCCCCCCcce-----------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRF-----------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+. .+|+.|+|..++. ..+|+.|+-.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCceE
Confidence 357999999875 4899999998772 3568888887765
No 223
>PRK14290 chaperone protein DnaJ; Provisional
Probab=88.26 E-value=0.47 Score=41.65 Aligned_cols=38 Identities=29% Similarity=0.755 Sum_probs=30.2
Q ss_pred CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+. .+|+.|+|..+. ...+|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~-----------~~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI-----------PEEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE-----------ccCCCCCCCCceeE
Confidence 347999999884 489999999876 24679999888765
No 224
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=2.2 Score=35.28 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=43.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE-ecc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT--FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI-GGA 95 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~--~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I-GG~ 95 (174)
.|.||+- +||..|...-+.|+++|.. +..+|-...+.. .++. + ..++|.||+||+.+ +|.
T Consensus 12 ~VkI~~H------ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~~~--~-V~SvP~Vf~DGel~~~dp 74 (265)
T COG5494 12 EVKIFTH------KTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AFEK--G-VISVPSVFIDGELVYADP 74 (265)
T ss_pred EEEEEEe------cchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hhhc--c-eeecceEEEcCeEEEcCC
Confidence 5778886 4899999999999998874 666666544332 1221 2 67899999999975 443
No 225
>PRK14281 chaperone protein DnaJ; Provisional
Probab=87.89 E-value=0.5 Score=41.99 Aligned_cols=55 Identities=27% Similarity=0.602 Sum_probs=35.2
Q ss_pred CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313 120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~ 174 (174)
...|..|.|.+. ..|..|+|+..+.......-+ ......|+.|+-.|.+ +|+.|.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY 226 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence 456888888765 569999999766543211000 0124689999888854 677773
No 226
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=87.81 E-value=0.53 Score=42.29 Aligned_cols=55 Identities=27% Similarity=0.535 Sum_probs=34.4
Q ss_pred CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc-----cCCCCC
Q 047313 120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV-----KCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~-----~C~~C~ 174 (174)
...|..|.|.+. ..|+.|+|+...+....... .......|+.|+-.|-+ +|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 456888888774 57999999976443221100 00124578888888865 588873
No 227
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=87.80 E-value=0.4 Score=43.07 Aligned_cols=41 Identities=24% Similarity=0.700 Sum_probs=30.0
Q ss_pred CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
...|..|+|.+. .+|+.|+|+.+++.. ..+|+.|+-.|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~---------~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE---------SKKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc---------cccCCcCCCcceee
Confidence 346999998874 389999999877431 25689998887654
No 228
>PRK14289 chaperone protein DnaJ; Provisional
Probab=87.67 E-value=0.64 Score=41.06 Aligned_cols=38 Identities=29% Similarity=0.812 Sum_probs=29.6
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|..++ ...+|+.|+-.|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-----------~~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI-----------IKKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc-----------cCcCCCCCCCCcEE
Confidence 4579999998765 79999999765 24679999888765
No 229
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.5 Score=38.10 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhhh
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLHE 103 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~e 103 (174)
.||+|.+||+++--++|+++..-+..|.+. .=-+..| +.+||.+. =+|++++-.=++.....
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG-~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIG-QKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc--Chhhhhc-ccccceEEccccccchhhhHHHHHHH
Confidence 799999999999999999988777554331 1223456 89999986 47888877656555543
No 230
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=87.47 E-value=3.5 Score=30.70 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=39.7
Q ss_pred cEEEEEeecCCCCCCChhHHHHHH-HHHh--------CCCcEEEEECCCCHHHHHHHHH----hcCCCCCCcEEE-E--C
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRF-LLQS--------FKVTFYERDVSLHMEFRDELWS----SLSGRVIPPRLF-I--K 88 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~-iL~~--------~~v~~~e~Dv~~~~~~~~el~~----~~g~~~~~P~vF-I--~ 88 (174)
.|+|+..+ ..|++|+.+.. .+.. .++.+..+|+...++..+.+.+ +.| ...+|.+. + +
T Consensus 17 pVll~f~a-----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~-~~G~Pt~vfl~~~ 90 (124)
T cd02955 17 PIFLSIGY-----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTG-QGGWPLNVFLTPD 90 (124)
T ss_pred eEEEEEcc-----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcC-CCCCCEEEEECCC
Confidence 46665544 26999998864 3332 2455677888776665544433 345 77889884 4 5
Q ss_pred CEEEecc
Q 047313 89 GRYIGGA 95 (174)
Q Consensus 89 G~~IGG~ 95 (174)
|+.|-+.
T Consensus 91 G~~~~~~ 97 (124)
T cd02955 91 LKPFFGG 97 (124)
T ss_pred CCEEeee
Confidence 7777443
No 231
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=87.45 E-value=0.074 Score=43.05 Aligned_cols=86 Identities=23% Similarity=0.486 Sum_probs=60.5
Q ss_pred CCcEEEECCEEEeccchhhhhhhcCchhHHhhcCCCCC--CCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCcccccc
Q 047313 81 IPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNL--SDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIR 158 (174)
Q Consensus 81 ~~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~~~~~~--~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~r 158 (174)
..|.-+++.-++=...||.++ .+|.|.+.|+.+-... .-..|..|.+.+| .|..|+.+ .+..--... ...+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~-~~IfPF~~~----~~~~ 174 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSD-DIIFPFQID----TTVR 174 (202)
T ss_pred cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCC-CCCCCCCCC----Ceee
Confidence 556667777778888888888 5889999887654433 2338999999998 79999988 443333321 2789
Q ss_pred CcccccCcc------ccCCCC
Q 047313 159 CPECNENGL------VKCPFC 173 (174)
Q Consensus 159 C~~CnenGl------~~C~~C 173 (174)
|+.|+.-=- ..||.|
T Consensus 175 C~~C~~v~H~~C~~~~~CpkC 195 (202)
T PF13901_consen 175 CPKCKSVFHKSCFRKKSCPKC 195 (202)
T ss_pred CCcCccccchhhcCCCCCCCc
Confidence 998875321 456766
No 232
>PRK14281 chaperone protein DnaJ; Provisional
Probab=87.42 E-value=0.5 Score=41.98 Aligned_cols=38 Identities=32% Similarity=0.770 Sum_probs=27.6
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+.+ +|+.|+|..++. .-+|+.|+-.|.+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCccE
Confidence 3468888888743 688888887762 2458888877765
No 233
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=87.35 E-value=2.5 Score=29.55 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHh----C---C--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECC
Q 047313 39 TFEDCRTIRFLLQS----F---K--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKG 89 (174)
Q Consensus 39 ~c~~C~~vr~iL~~----~---~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G 89 (174)
.|+.|++....|+. + + +.+..+|+...+. +.+..+ -.++|+++ ++|
T Consensus 26 wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-I~~~Pt~~l~~~ 81 (104)
T cd03000 26 WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFG-VRGYPTIKLLKG 81 (104)
T ss_pred CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcC-CccccEEEEEcC
Confidence 59999987766643 2 3 5566677765543 444455 77899984 444
No 234
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=87.24 E-value=1.6 Score=31.96 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=38.1
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGR 90 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~ 90 (174)
--+|.|..+| |+.|+.+...|+.. .+.+-.+|+..+.... .+..+ ..++|+| |.+|+
T Consensus 31 ~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~-I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKH-FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcC-CcccCEEEEEECCc
Confidence 3566777775 99999998888653 2567888887666432 22334 5678877 55665
No 235
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=87.21 E-value=1.7 Score=29.81 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=35.7
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh--------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS--------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRY 91 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~ 91 (174)
.-++.|+++ .|+.|+.+...|+. ..+.+-.+|+..+ .-..+.+..+ ...+|.++ -+|+.
T Consensus 19 ~~~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~-i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 19 HVLVMFYAP------WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYN-VKGFPTFKYFENGKF 87 (104)
T ss_pred CEEEEEECC------CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCC-CccccEEEEEeCCCe
Confidence 446666666 59999988655532 2255677787662 1123445555 67889874 35553
No 236
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=87.15 E-value=2.6 Score=28.76 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF--------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~--------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
..-+|.|.++ .|+.|+.+...|+.. .+.+..+|.+.+ ++....+ ...+|.+++
T Consensus 19 ~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~-~~~~Pt~~~ 79 (104)
T cd02995 19 KDVLVEFYAP------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFV-VDGFPTILF 79 (104)
T ss_pred CcEEEEEECC------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhcc-CCCCCEEEE
Confidence 4456667776 499999987777542 255667777653 2333334 578998864
No 237
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=86.65 E-value=0.65 Score=40.42 Aligned_cols=39 Identities=31% Similarity=0.748 Sum_probs=30.0
Q ss_pred CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
...|..|.|.+. .+|+.|+|+.+.. .-.|+.|+-.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcEec
Confidence 456999999864 4799999998763 24699999888653
No 238
>PTZ00062 glutaredoxin; Provisional
Probab=86.51 E-value=4.9 Score=32.61 Aligned_cols=70 Identities=7% Similarity=0.101 Sum_probs=44.4
Q ss_pred CcchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCC
Q 047313 7 ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVI 81 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~ 81 (174)
+....++|.+.-. .+.+.+|+|.++ .-|+.|+.+...|..+ .+.|..+|.. .+ -..
T Consensus 2 ~~~~~ee~~~~i~-~~~g~~vl~f~a-----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~-V~~ 62 (204)
T PTZ00062 2 NFIKKEEKDKLIE-SNTGKLVLYVKS-----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA-NNE 62 (204)
T ss_pred CCCCHHHHHHHHh-cCCCcEEEEEeC-----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cC-ccc
Confidence 4455566666642 123667777754 2499999999888764 3555555542 44 778
Q ss_pred CcEE--EECCEEEecc
Q 047313 82 PPRL--FIKGRYIGGA 95 (174)
Q Consensus 82 ~P~v--FI~G~~IGG~ 95 (174)
+|.+ |-+|+.|+.+
T Consensus 63 vPtfv~~~~g~~i~r~ 78 (204)
T PTZ00062 63 YGVFEFYQNSQLINSL 78 (204)
T ss_pred ceEEEEEECCEEEeee
Confidence 9965 3588877654
No 239
>PRK14287 chaperone protein DnaJ; Provisional
Probab=85.43 E-value=0.64 Score=40.91 Aligned_cols=38 Identities=29% Similarity=0.842 Sum_probs=29.5
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|+.++. ...|+.|+-.|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 207 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGKV 207 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeEE
Confidence 3569999999754 699999998762 3568999877765
No 240
>PF13728 TraF: F plasmid transfer operon protein
Probab=85.19 E-value=3.9 Score=33.30 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCC--HH-----HHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLH--ME-----FRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~--~~-----~~~el~~~~g~~~~~P~vFI 87 (174)
....+++|..+ +|++|+...-+|+ .+|+.+..++++.. +. .-..+.+.+| ...+|.+|+
T Consensus 120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~L 189 (215)
T PF13728_consen 120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFL 189 (215)
T ss_pred hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEE
Confidence 44567777776 7999998877775 47898888888521 00 0122444556 789999986
No 241
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=84.82 E-value=0.62 Score=27.49 Aligned_cols=32 Identities=28% Similarity=0.696 Sum_probs=21.7
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
.+.|+.|+..-++-.+.-... ...+||+.|..
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~--~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAG--GRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccC--CcEEECCCCCc
Confidence 367999999987765431111 13799999975
No 242
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=0.97 Score=40.06 Aligned_cols=38 Identities=26% Similarity=0.675 Sum_probs=30.2
Q ss_pred CCCCCCCCCcce-------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRF-------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~-------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+. ++|+.|+|+.++. .-.|+.|+-.|.+
T Consensus 159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~v 209 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGRV 209 (371)
T ss_pred CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCeE
Confidence 448999999884 5799999998874 3578888877764
No 243
>PRK14291 chaperone protein DnaJ; Provisional
Probab=84.58 E-value=0.87 Score=40.21 Aligned_cols=37 Identities=32% Similarity=0.812 Sum_probs=26.6
Q ss_pred CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|...+ ...|+.|+-.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCceE
Confidence 3468889988765 68888888742 2458888776654
No 244
>PRK14293 chaperone protein DnaJ; Provisional
Probab=84.53 E-value=0.93 Score=39.91 Aligned_cols=37 Identities=30% Similarity=0.800 Sum_probs=28.2
Q ss_pred CCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 121 CSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 121 ~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..|..|.|.+.+ +|+.|+|..++. ..+|..|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 212 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGVK 212 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCccc
Confidence 469999998864 699999998762 3568888877764
No 245
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=84.42 E-value=3.8 Score=29.57 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=33.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.-++.|+++ .|+.|......++.. .+.+-.+|.+.+. -.++.+..+ ...+|++++
T Consensus 21 ~vvV~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~-i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYAS------WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFG-VTGYPTLRY 84 (114)
T ss_pred eEEEEEECC------CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCC-CCCCCEEEE
Confidence 456666666 499999887776542 1445555653322 234555556 678998864
No 246
>PRK14283 chaperone protein DnaJ; Provisional
Probab=84.37 E-value=1.3 Score=39.11 Aligned_cols=38 Identities=32% Similarity=0.819 Sum_probs=28.4
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|.|.+.+ +|+.|+|..+.. ...|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCceee
Confidence 4469999998765 599999987762 3568888877764
No 247
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=84.09 E-value=0.88 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=18.9
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeee
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVF 144 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~ 144 (174)
...|..|.|.+.++|..|+|+..+.
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEEEe
Confidence 4568888888888888888886543
No 248
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=83.93 E-value=2.4 Score=31.42 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcE--EEECCEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPR--LFIKGRYI 92 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~--vFI~G~~I 92 (174)
+...|||-.+. .-|+.|..+-.+|++. + +.|-.+|+...+++.+++ + -...|. +|-+|+||
T Consensus 13 ~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y----~-I~amPtfvffkngkh~ 81 (114)
T cd02986 13 AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF----D-ISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc----C-ceeCcEEEEEECCcEE
Confidence 44555555543 3599999998888763 3 678899998777755543 3 333554 46689887
No 249
>PRK14292 chaperone protein DnaJ; Provisional
Probab=83.61 E-value=1 Score=39.54 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=29.5
Q ss_pred CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..|+|.+.+ +|..|+|..+.. ...|+.|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceEE
Confidence 4569999998765 599999997762 4679999887764
No 250
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=83.40 E-value=4.3 Score=32.46 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=37.1
Q ss_pred cEEEEEeecCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCH-----H----HHHHHHHhcCC-CCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTI----RFLLQSFKVTFYERDVSLHM-----E----FRDELWSSLSG-RVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~v----r~iL~~~~v~~~e~Dv~~~~-----~----~~~el~~~~g~-~~~~P~vFI 87 (174)
++|+|..+| ||+|++. +++-+++++.+.-+.+..+. . -...+.+.+|. ...+|..|+
T Consensus 72 ~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred eEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 488888885 9999987 55666678887777664321 1 12334445552 258999985
No 251
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=83.12 E-value=2.9 Score=34.00 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhC----CCc---E--------EEEECCCCHHH---HHHHHHhcCC-CCCCcEEE
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVT---F--------YERDVSLHMEF---RDELWSSLSG-RVIPPRLF 86 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~---~--------~e~Dv~~~~~~---~~el~~~~g~-~~~~P~vF 86 (174)
|-|||+- +|.-|=-|-++|..+ .|- | -+.|-...+++ +..+.+..|. ..=.||++
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 6789986 999998888888763 221 1 13344444443 3334444442 33459999
Q ss_pred ECCE-EEeccc
Q 047313 87 IKGR-YIGGAD 96 (174)
Q Consensus 87 I~G~-~IGG~d 96 (174)
|||+ +..|.+
T Consensus 76 VnG~~~~~g~~ 86 (202)
T PF06764_consen 76 VNGREHRVGSD 86 (202)
T ss_dssp ETTTEEEETT-
T ss_pred ECCeeeeeccC
Confidence 9995 456655
No 252
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=82.72 E-value=4.3 Score=33.37 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I 92 (174)
-+|.|+++ .|+.|+.+...++. + .+.+..+|+..++. +.+..+ -..+|.++ -+|+.+
T Consensus 55 vlV~FyAp------WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~~-I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAP------WCSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRFA-IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECC------CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHcC-CCcCCEEEEEECCEEE
Confidence 45666666 49999998887755 2 25567777766543 445556 77889874 477654
No 253
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=82.66 E-value=3.9 Score=34.46 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCHH-------HHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLHME-------FRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~~-------~~~el~~~~g~~~~~P~vFI 87 (174)
+...++.|..+ .|+.|+...-+|+ .+++.+..+++..+.. .-..+.+.+| ...+|.+|+
T Consensus 166 ~k~~Lv~F~As------wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFFFKS------DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAVFL 235 (271)
T ss_pred CCeEEEEEECC------CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeEEE
Confidence 44556666666 5999998877775 4677787777754321 0122445566 789999974
No 254
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=4.3 Score=33.05 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=52.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC--CCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV--SLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv--~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
++++|+.. .-+.+.++...++..|+.|+.+.| ...+....++.++.- ..++|.+.-+|-.+-....|...
T Consensus 2 ~~~ly~~~------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP-~~kVP~l~d~~~~l~eS~AI~~Y 73 (226)
T KOG0867|consen 2 KLKLYGHL------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNP-LGKVPALEDGGLTLWESHAILRY 73 (226)
T ss_pred CceEeecC------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCc-CCCCCeEecCCeEEeeHHHHHHH
Confidence 46789887 458899999999999999988854 344455566666654 77999999998877766555433
No 255
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=82.07 E-value=9 Score=27.67 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=32.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHH-H-------------------HHHHHHh
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F--KVTFYERDVSLHME-F-------------------RDELWSS 75 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~--~v~~~e~Dv~~~~~-~-------------------~~el~~~ 75 (174)
.|+||..+. .|+.|++....|.+ . ++.+..+++..+.+ + ...+.+.
T Consensus 20 ~vll~Fwa~-----wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 20 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred EEEEEEECC-----CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 355555442 59999987666542 1 45566666654432 1 1344445
Q ss_pred cCCCCCCcEEEE
Q 047313 76 LSGRVIPPRLFI 87 (174)
Q Consensus 76 ~g~~~~~P~vFI 87 (174)
++ ...+|.+||
T Consensus 95 ~~-v~~~P~~~l 105 (131)
T cd03009 95 FK-IEGIPTLII 105 (131)
T ss_pred cC-CCCCCEEEE
Confidence 55 677898864
No 256
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.96 E-value=1.2 Score=40.73 Aligned_cols=45 Identities=31% Similarity=0.795 Sum_probs=32.8
Q ss_pred CCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc--ccCCCCC
Q 047313 121 CSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL--VKCPFCS 174 (174)
Q Consensus 121 ~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl--~~C~~C~ 174 (174)
-.|..||-. +.|+.|+++-..+. +.. .++|+.|+-.-- ..||.|.
T Consensus 214 ~~C~~Cg~~--~~C~~C~~~l~~h~-~~~------~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 214 LLCRSCGYI--LCCPNCDVSLTYHK-KEG------KLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred eEhhhCcCc--cCCCCCCCceEEec-CCC------eEEcCCCcCcCCCCCCCCCCC
Confidence 369999964 67999999855443 222 689999986653 5799984
No 257
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=4.9 Score=32.78 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313 40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del 98 (174)
...++.+|.+|.-.+++|++.-++.... ..+++..+. -.++|.+-|||..|.-.-.+
T Consensus 12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~p-fgqlP~l~vDg~~i~QS~AI 68 (206)
T KOG1695|consen 12 RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMP-FGQLPVLEVDGKKLVQSRAI 68 (206)
T ss_pred chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCC-CCCCCEEeECCEeeccHHHH
Confidence 4789999999999999999999987654 445555544 67999999999987654444
No 258
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.78 E-value=6.3 Score=28.49 Aligned_cols=68 Identities=9% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCCcEEEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCC--HHHHHHHHHhc-CCCCCCcE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLH--MEFRDELWSSL-SGRVIPPR 84 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~--~~~~~el~~~~-g~~~~~P~ 84 (174)
..-+++||+... .|..| .....+|+. +.+.|+.+||..+ ..+..++.+.. ....-.|.
T Consensus 3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 445788998763 46555 344555543 3455899999654 33444444433 33556799
Q ss_pred EEECCEEEec
Q 047313 85 LFIKGRYIGG 94 (174)
Q Consensus 85 vFI~G~~IGG 94 (174)
|.|++++|+.
T Consensus 78 ivvedeiVae 87 (106)
T COG4837 78 IVVEDEIVAE 87 (106)
T ss_pred EEEcceEeec
Confidence 9999999963
No 259
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=81.57 E-value=0.81 Score=28.63 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 127 GNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 127 gg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
||.-||.|..|.--=.......-.......+||.+|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 688899999997542222111110001237999999874
No 260
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=80.91 E-value=6.5 Score=26.92 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=34.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCC--CCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRV--IPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~--~~P~vFI 87 (174)
-+++|.++ .|+.|..++..|+. + .+.|..+|+...+. +.+..| -. .+|+|.+
T Consensus 15 ~~~~f~~~------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~-i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNK------DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFG-LKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcC------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcC-CChhhCCEEEE
Confidence 45555554 58899999998876 2 36788888865444 344445 44 8999864
No 261
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=80.85 E-value=2.6 Score=31.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=17.4
Q ss_pred CCCCcEEEECCEEEeccchhhhh
Q 047313 79 RVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~del~~l 101 (174)
-..+|.+||||+++.|..++.+|
T Consensus 134 i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 134 ITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp -SSSSEEEETTCEEETTTSHHHH
T ss_pred CccccEEEECCEEeCCCCCHHHH
Confidence 67899999999999776555443
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=80.56 E-value=2.4 Score=32.57 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHh------cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313 45 TIRFLLQSFKVTFYERD-VSLHMEFRDELWSS------LSGRVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 45 ~vr~iL~~~~v~~~e~D-v~~~~~~~~el~~~------~g~~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
.+..++.+.|++.++.. ...+.++++.+.+- .| ...+|.++|||+++-|.+.+..+.
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~g-i~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARG-VFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCcCCeEEECCeeecccccHHHHH
Confidence 34455555555432211 12334444444332 24 789999999999999998876543
No 263
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=80.53 E-value=7.1 Score=36.37 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=33.3
Q ss_pred CChhHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 39 TFEDCRTIRFLL-------QS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 39 ~c~~C~~vr~iL-------~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.|+.|+...... +. .++.+..+|++.+.....++.+..+ ...+|.+++
T Consensus 485 WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~-v~g~Pt~~~ 540 (571)
T PRK00293 485 WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN-VLGLPTILF 540 (571)
T ss_pred cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC-CCCCCEEEE
Confidence 599999875542 11 3577888999876544456666667 788999854
No 264
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=80.40 E-value=0.44 Score=35.90 Aligned_cols=46 Identities=17% Similarity=0.558 Sum_probs=31.3
Q ss_pred hhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 102 HEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 102 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
+....|+.+|..+=. .||.|+.|+..--.+..+.. ..+++|.+|..
T Consensus 77 ~~~~~i~~~L~~fI~-------------~yVlC~~C~spdT~l~k~~r----~~~l~C~aCGa 122 (125)
T PF01873_consen 77 FSSKQIQDLLDKFIK-------------EYVLCPECGSPDTELIKEGR----LIFLKCKACGA 122 (125)
T ss_dssp SSCCHHHHHHHHHHC-------------HHSSCTSTSSSSEEEEEETT----CCEEEETTTSC
T ss_pred cCHHHHHHHHHHHHH-------------HEEEcCCCCCCccEEEEcCC----EEEEEecccCC
Confidence 456677777765433 28999999988555543322 14899999975
No 265
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=79.72 E-value=12 Score=27.23 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=32.9
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHH---------------------HHHHHHH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F--KVTFYERDVSLHME---------------------FRDELWS 74 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~--~v~~~e~Dv~~~~~---------------------~~~el~~ 74 (174)
.|+||..+ ..|+.|......|+. . ++.+..+++..+.+ ....+.+
T Consensus 19 ~vll~F~a-----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 19 TVGLYFSA-----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred EEEEEEEC-----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 35555544 259999987665542 2 45566666654432 1234444
Q ss_pred hcCCCCCCcEEE-EC
Q 047313 75 SLSGRVIPPRLF-IK 88 (174)
Q Consensus 75 ~~g~~~~~P~vF-I~ 88 (174)
..+ ...+|.++ |+
T Consensus 94 ~~~-v~~iPt~~lid 107 (132)
T cd02964 94 QFK-VEGIPTLVVLK 107 (132)
T ss_pred HcC-CCCCCEEEEEC
Confidence 455 67788886 54
No 266
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=79.25 E-value=0.82 Score=34.35 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hC-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SF-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.+-+|++++.+| |+||....-+|. .. ++++..+..+.+.+..+.+.. ++...+|.+++
T Consensus 41 ~~~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 41 KPYNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT---SS--SSEEEE
T ss_pred CCcEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh--CCCeecCEEEE
Confidence 445899999987 999988665554 44 566666654434443333322 44889999865
No 267
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=79.12 E-value=3.5 Score=31.68 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=35.7
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EE-CCE
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FI-KGR 90 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI-~G~ 90 (174)
|+-|+.+| |+.|..+--+|++. + +.+..+||...+++.+++ +-...+|.+ |. +|+
T Consensus 27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y----~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY----ELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc----CccCCCcEEEEEECCe
Confidence 44455554 99999998888763 2 456899998887765544 312245666 44 665
No 268
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=78.80 E-value=15 Score=26.52 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI 92 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I 92 (174)
...|||+.++. -|+.|+.+.=++..+ .+.|..+|+.. -.++....+ ...+|.+. .+|+-+
T Consensus 21 ~kliVvdF~a~-----wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~-V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 21 DKLVVVDFYAT-----WCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFN-VKAMPTFVFYKGGEEV 87 (106)
T ss_pred CCeEEEEEECC-----CCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcC-ceEeeEEEEEECCEEE
Confidence 34555544441 499999999888764 45677888865 333444445 77889883 366533
No 269
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=78.69 E-value=1.2 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.686 Sum_probs=21.5
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
||.|+.|+-.--.+..++. ..+++|.+|..
T Consensus 80 yVlC~~C~spdT~l~k~~r----~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTELIKENR----LFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEEEEeCC----eEEEEccccCC
Confidence 9999999998544443322 24899999963
No 270
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=77.97 E-value=1.7 Score=34.91 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=23.9
Q ss_pred ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 130 RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 130 r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
+-.+|+.|+|+.++.... .+|+.|+-.|.++
T Consensus 98 ~~~~C~~C~G~G~~i~~~---------~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRRQ---------RECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecCC---------CCCCCCCCccEEe
Confidence 388999999998884322 4699999888653
No 271
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=77.62 E-value=2 Score=32.73 Aligned_cols=34 Identities=15% Similarity=0.507 Sum_probs=23.3
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
||.|+.|+-.--.+..++. ..+++|.+|....-+
T Consensus 97 yVlC~~C~sPdT~l~k~~r----~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 97 YVICRECNRPDTRIIKEGR----VSLLKCEACGAKAPL 130 (133)
T ss_pred eEECCCCCCCCcEEEEeCC----eEEEecccCCCCCcc
Confidence 9999999998444443322 137999999865543
No 272
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=77.46 E-value=1.7 Score=33.30 Aligned_cols=34 Identities=18% Similarity=0.540 Sum_probs=24.0
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
||.|+.|+-.--.+..++. ..+++|.+|....-+
T Consensus 102 yVlC~~C~spdT~l~k~~r----~~~l~C~ACGa~~~V 135 (138)
T PRK03988 102 YVICPECGSPDTKLIKEGR----IWVLKCEACGAETPV 135 (138)
T ss_pred cEECCCCCCCCcEEEEcCC----eEEEEcccCCCCCcC
Confidence 9999999998544443322 248999999876543
No 273
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=2.9 Score=36.67 Aligned_cols=69 Identities=25% Similarity=0.503 Sum_probs=44.0
Q ss_pred chhHHhhcCCCC---CCCCCCCCCCCcce-----EeCCCCCCCeeeeecCCCC--CCccccccCcccccCccc-----cC
Q 047313 106 KLKKLLEGIPRN---LSDCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDD--DDDELHIRCPECNENGLV-----KC 170 (174)
Q Consensus 106 ~L~~~L~~~~~~---~~~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~--~~~~~~~rC~~CnenGl~-----~C 170 (174)
.|+++...-.+. .....|..|-|.++ .+|+.|.|+.-........ -.....++|..||..|-+ +|
T Consensus 110 ~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C 189 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRC 189 (337)
T ss_pred EHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccC
Confidence 356655442221 12446888877765 3499999995544322211 012248999999999999 99
Q ss_pred CCCC
Q 047313 171 PFCS 174 (174)
Q Consensus 171 ~~C~ 174 (174)
+.|.
T Consensus 190 ~~C~ 193 (337)
T KOG0712|consen 190 KTCS 193 (337)
T ss_pred cccc
Confidence 9994
No 274
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=76.71 E-value=12 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHhCCCc---EEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313 39 TFEDCRTIRFLLQSFKVT---FYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL 101 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~---~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l 101 (174)
.-+.|-++..+|+-.+.+ |+.+-... +. ++ -...+|.+.. +++.|.|+..+.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~S-ptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LS-PTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cC-CCCCCCEEEECCCcEEECHHHHHHh
Confidence 458999999999999999 66665532 21 11 1468999999 99999999998764
No 275
>PRK14873 primosome assembly protein PriA; Provisional
Probab=76.68 E-value=2.5 Score=40.17 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=33.5
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCc-cccCCCCC
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENG-LVKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenG-l~~C~~C~ 174 (174)
.-.|..||- .+-|+.|+++-..+. +.. .++|+.|+-.- -.+||.|.
T Consensus 383 ~l~C~~Cg~--~~~C~~C~~~L~~h~-~~~------~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 383 SLACARCRT--PARCRHCTGPLGLPS-AGG------TPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred eeEhhhCcC--eeECCCCCCceeEec-CCC------eeECCCCcCCCcCccCCCCc
Confidence 347999996 578999999965532 222 69999997643 45899994
No 276
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=76.06 E-value=2.1 Score=27.42 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=20.7
Q ss_pred eEeCCCCCCCeeeeecCCCCCCcc--ccccCccccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDE--LHIRCPECNE 164 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~--~~~rC~~Cne 164 (174)
..||+.| |+..+........... .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4689999 8866665553311110 3688998875
No 277
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.84 E-value=2.1 Score=42.23 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=36.2
Q ss_pred CcEEEECCEEE------------eccchhhhhhhcCchhH----HhhcCCCCCCCCCCCCCCCcceE------------e
Q 047313 82 PPRLFIKGRYI------------GGADEVVGLHEQGKLKK----LLEGIPRNLSDCSCNGCGNIRFV------------L 133 (174)
Q Consensus 82 ~P~vFI~G~~I------------GG~del~~l~e~G~L~~----~L~~~~~~~~~~~C~~Cgg~r~v------------~ 133 (174)
-+.|+|+-..| |=+|++..|+..=...+ --..|+-+.+.+.|..|.|.+++ +
T Consensus 682 ~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 761 (924)
T TIGR00630 682 DKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 761 (924)
T ss_pred CceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccC
Confidence 46678887644 45566666654311111 01122223346789999999865 6
Q ss_pred CCCCCCCeee
Q 047313 134 CSNCSGSCKV 143 (174)
Q Consensus 134 C~~C~Gs~k~ 143 (174)
|+.|+|++..
T Consensus 762 C~~C~G~R~~ 771 (924)
T TIGR00630 762 CEVCKGKRYN 771 (924)
T ss_pred CCCcCCceeC
Confidence 8888888654
No 278
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=74.49 E-value=2.5 Score=34.20 Aligned_cols=33 Identities=27% Similarity=0.624 Sum_probs=22.6
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL 167 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl 167 (174)
||.|+.|+-.--.+..++. ..+++|.+|....-
T Consensus 98 yV~C~~C~~pdT~l~k~~~----~~~l~C~aCGa~~~ 130 (201)
T PRK12336 98 YVICSECGLPDTRLVKEDR----VLMLRCDACGAHRP 130 (201)
T ss_pred eEECCCCCCCCcEEEEcCC----eEEEEcccCCCCcc
Confidence 8999999988444443322 24799999976543
No 279
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=74.24 E-value=2.1 Score=25.06 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=7.4
Q ss_pred cccCccccc
Q 047313 156 HIRCPECNE 164 (174)
Q Consensus 156 ~~rC~~Cne 164 (174)
...||+|..
T Consensus 26 ~~~CP~Cg~ 34 (41)
T smart00834 26 LATCPECGG 34 (41)
T ss_pred CCCCCCCCC
Confidence 678999887
No 280
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=73.95 E-value=29 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHH
Q 047313 39 TFEDCRTIRFLLQS----FKVTFYERDVSLHMEFRDELWS 74 (174)
Q Consensus 39 ~c~~C~~vr~iL~~----~~v~~~e~Dv~~~~~~~~el~~ 74 (174)
.|+.|.+....|+. +++.+..+++..+.+...++.+
T Consensus 36 ~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 36 WCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHH
Confidence 69999987777754 3466666666555444344433
No 281
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=73.79 E-value=3.5 Score=26.69 Aligned_cols=39 Identities=21% Similarity=0.612 Sum_probs=28.0
Q ss_pred cceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 129 ~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
..++.|+.|++..++-++....-.. .-+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkN-fPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKN-FPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceecc-ccccCCCCCceEEE
Confidence 3689999999999888877652222 26889999765443
No 282
>PRK05580 primosome assembly protein PriA; Validated
Probab=73.26 E-value=3 Score=39.64 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=32.3
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCc--cccCCCCC
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENG--LVKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenG--l~~C~~C~ 174 (174)
.-.|..||-. +.|+.|+++-..+. +. ..++|+.|+-.- -.+||.|.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~-~~------~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHR-FQ------RRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEEC-CC------CeEECCCCcCCCCCCCCCCCCc
Confidence 3469999864 56999999854332 22 268999998764 34799884
No 283
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=72.43 E-value=12 Score=32.17 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=60.6
Q ss_pred CCCCCCCcchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhH-HHHHHHHHh-CCCcEEEEECCCCHHHHHHHHHhcCC
Q 047313 1 MEKDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDC-RTIRFLLQS-FKVTFYERDVSLHMEFRDELWSSLSG 78 (174)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C-~~vr~iL~~-~~v~~~e~Dv~~~~~~~~el~~~~g~ 78 (174)
+.+|.+.+.....+++.-.-.+...|.+|+.+=. ..=+.+ +.+|+++++ ..|=-...|+..|.++...|.+...
T Consensus 96 ~~SD~~~P~LdLGWP~~~~~~g~Tr~~vy~qPp~---~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~- 171 (284)
T PF07894_consen 96 MQSDTEPPPLDLGWPETPSYKGVTRATVYFQPPK---DGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAAN- 171 (284)
T ss_pred CcCCCCCCCCCCCCCCCCcccCCceEEEEeCCCC---CCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHH-
Confidence 3567777766677887444467789999998721 233455 456666665 5666678899999999999988876
Q ss_pred CCCCcEEE-ECCEE
Q 047313 79 RVIPPRLF-IKGRY 91 (174)
Q Consensus 79 ~~~~P~vF-I~G~~ 91 (174)
.+.||+-. +|...
T Consensus 172 kR~VpVYiLLD~~~ 185 (284)
T PF07894_consen 172 KRGVPVYILLDEQN 185 (284)
T ss_pred hcCCcEEEEechhc
Confidence 77788754 35443
No 284
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=72.34 E-value=26 Score=27.30 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHH---hCCCcEEEEECCCCHH
Q 047313 39 TFEDCRTIRFLLQ---SFKVTFYERDVSLHME 67 (174)
Q Consensus 39 ~c~~C~~vr~iL~---~~~v~~~e~Dv~~~~~ 67 (174)
-|+.|.+..-.|. ..++.+.-+++..+++
T Consensus 79 wC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 79 WCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 5999988665554 4578888887766544
No 285
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=72.29 E-value=6.3 Score=32.74 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=24.3
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEEC
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDV 62 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv 62 (174)
.++..|++|+-. .||+|+++-.-|. .-.|.+..+.+
T Consensus 116 ~ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 116 DAPRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 344567788876 8999999866654 32377666653
No 286
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=71.34 E-value=22 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=26.5
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCC
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSL 64 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~ 64 (174)
++.+++.|..+| |+.|++..-.|+ .+++.+.-+++..
T Consensus 50 ~~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 50 DDYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 445688888874 999998777765 4577776666643
No 287
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=70.63 E-value=3.6 Score=43.37 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=33.9
Q ss_pred EEeccchhhhhhhcCchhHHhhcCCC-----CCCCCCCCCCCCcceE------------eCCCCCCCeee
Q 047313 91 YIGGADEVVGLHEQGKLKKLLEGIPR-----NLSDCSCNGCGNIRFV------------LCSNCSGSCKV 143 (174)
Q Consensus 91 ~IGG~del~~l~e~G~L~~~L~~~~~-----~~~~~~C~~Cgg~r~v------------~C~~C~Gs~k~ 143 (174)
|+|=+|++.+|+.+=...+. .++.+ +.+.+.|..|.|.+++ +|+.|+|.+..
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 56667888888765433332 22222 3346679999999864 78888888654
No 288
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=70.02 E-value=3 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.608 Sum_probs=19.9
Q ss_pred EeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 132 VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
+.|+.|+..-.+-.+.-. .....++|+.|++
T Consensus 3 i~Cp~C~~~y~i~d~~ip--~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIP--PKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCC--CCCcEEECCCCCC
Confidence 679999887655433211 1124799999975
No 289
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=69.79 E-value=9.1 Score=27.81 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=19.8
Q ss_pred CCCCcEEEECCEEEeccchhhhhh
Q 047313 79 RVIPPRLFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~del~~l~ 102 (174)
-..+|.++|+|+.+-|+.+...|.
T Consensus 127 i~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 127 ITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred CCcCCeEEECCEEecCCCCHHHHH
Confidence 678999999999999988765543
No 290
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=68.88 E-value=5.1 Score=35.38 Aligned_cols=78 Identities=28% Similarity=0.625 Sum_probs=49.7
Q ss_pred HHHHHhcCCCCCCcEEEE-------------CCEEEeccchhhhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCC
Q 047313 70 DELWSSLSGRVIPPRLFI-------------KGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSN 136 (174)
Q Consensus 70 ~el~~~~g~~~~~P~vFI-------------~G~~IGG~del~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~ 136 (174)
.++...+|+++++|+=|. +|+||-. -.|+.++|+.+|..+=. .||.|..
T Consensus 40 ~eIakAL~RPp~Y~tKyFGcELGAQT~fd~kn~ryiVN-----G~Hd~~KLqdlLdgFIk-------------KFVlC~~ 101 (400)
T KOG2767|consen 40 VEIAKALGRPPLYPTKYFGCELGAQTKFDVKNGRYIVN-----GAHEASKLQDLLDGFIK-------------KFVLCPS 101 (400)
T ss_pred HHHHHHhCCCCCcccccceeeccccccccccCCeeeec-----ccccHHHHHHHHHHHHH-------------HheeCcC
Confidence 345555565666665443 4566522 23677888999887644 4999999
Q ss_pred CCCC-eeeeecCCCCCCccccccCcccccCcccc
Q 047313 137 CSGS-CKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 137 C~Gs-~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
|.-. ...++.... ...+.|-+|.-.|.+.
T Consensus 102 C~NPETel~itk~q----~i~~~CkACG~r~~~d 131 (400)
T KOG2767|consen 102 CENPETELIITKKQ----TISLKCKACGFRSDMD 131 (400)
T ss_pred CCCCceeEEecccc----hhhhHHHHcCCccccc
Confidence 9887 444444321 2578999998776653
No 291
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=68.78 E-value=11 Score=36.49 Aligned_cols=46 Identities=28% Similarity=0.738 Sum_probs=33.2
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc--ccCCCCC
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL--VKCPFCS 174 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl--~~C~~C~ 174 (174)
.-.|..||-. .-|+.|..+- +++.... .++|..|+-..- ..||.|.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~l-t~H~~~~------~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPL-TLHKATG------QLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred eeecccCCCc--ccCCCCCcce-EEecCCC------eeEeCCCCCCCCCCCCCCCCC
Confidence 3469999864 5699999993 3333333 699999998744 5699994
No 292
>PF15616 TerY-C: TerY-C metal binding domain
Probab=68.64 E-value=5.5 Score=30.31 Aligned_cols=40 Identities=33% Similarity=0.864 Sum_probs=30.2
Q ss_pred CCCCCCCCCc-ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 120 DCSCNGCGNI-RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 120 ~~~C~~Cgg~-r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
...|..||.. .|+.| .|+ |++--++.+ ...||.|..+|-+
T Consensus 77 ~PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~-----~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVC-GCG---KLFCIDGEG-----EVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCCcChhcEEEe-cCC---CEEEeCCCC-----CEECCCCCCeeee
Confidence 3679999999 89998 564 677544432 6899999988753
No 293
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=68.17 E-value=17 Score=33.19 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=36.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKG 89 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G 89 (174)
--+|.|..+| |+.|+.+..+|+.. ++.+..+|++.+.. +.....++ -..+|+|+ .+|
T Consensus 373 ~VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~-I~~~PTii~Fk~g 438 (463)
T TIGR00424 373 AWLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQ-LGSFPTILFFPKH 438 (463)
T ss_pred eEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcC-CCccceEEEEECC
Confidence 3466677764 99999988877542 46788888876532 12223344 67889884 455
No 294
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=67.88 E-value=33 Score=22.80 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=29.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS---------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~---------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.|.||.++ ..|++|..+.+.+-+ .++-+..+|++...... .+.. .-+|.++|
T Consensus 19 pvlv~f~a-----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~-----~~~P~~~~ 79 (82)
T PF13899_consen 19 PVLVDFGA-----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR-----QGYPTFFF 79 (82)
T ss_dssp EEEEEEET-----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH-----CSSSEEEE
T ss_pred CEEEEEEC-----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC-----ccCCEEEE
Confidence 45555544 369999988776622 34456777774433322 2222 22898865
No 295
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=67.35 E-value=8.9 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHH----HhC----CCcEEEEECCCCHH
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLL----QSF----KVTFYERDVSLHME 67 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL----~~~----~v~~~e~Dv~~~~~ 67 (174)
+|.++..|++|... .||+|.++-..| +.+ .|.|..+++..+..
T Consensus 9 ~~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 9 NPDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp -TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 35666789999986 799998774444 443 67799999865544
No 296
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=66.45 E-value=41 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHh---CCCcEEEEECCCC
Q 047313 39 TFEDCRTIRFLLQS---FKVTFYERDVSLH 65 (174)
Q Consensus 39 ~c~~C~~vr~iL~~---~~v~~~e~Dv~~~ 65 (174)
.|+.|.+....|+. .++.+..+++..+
T Consensus 74 wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 74 WCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred cCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 69999987666644 4677777776443
No 297
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=66.11 E-value=3.4 Score=23.89 Aligned_cols=8 Identities=50% Similarity=1.323 Sum_probs=4.3
Q ss_pred eCCCCCCC
Q 047313 133 LCSNCSGS 140 (174)
Q Consensus 133 ~C~~C~Gs 140 (174)
.|+.|++.
T Consensus 5 ~C~~C~~~ 12 (33)
T PF08792_consen 5 KCSKCGGN 12 (33)
T ss_pred EcCCCCCC
Confidence 45555555
No 298
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=65.55 E-value=13 Score=26.34 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=34.6
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHH-HHHhCCCc------E--EEEECCCCHHHHHHHHHhcCCCCCCcEE-EEC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRF-LLQSFKVT------F--YERDVSLHMEFRDELWSSLSGRVIPPRL-FIK 88 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~-iL~~~~v~------~--~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~ 88 (174)
..++||..+ ..|++|....+ +|.+..|. | ...|+.. ++ ..++...++ ...+|.+ ||+
T Consensus 18 K~llv~~~~-----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e-~~~~~~~~~-~~~~P~~~~i~ 84 (114)
T cd02958 18 KWLLVYLQS-----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SE-GQRFLQSYK-VDKYPHIAIID 84 (114)
T ss_pred ceEEEEEec-----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-cc-HHHHHHHhC-ccCCCeEEEEe
Confidence 457777776 47999988643 55543332 3 3456644 23 235666666 7789988 453
No 299
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=65.20 E-value=40 Score=27.93 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=54.9
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch---hhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE---VVG 100 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de---l~~ 100 (174)
++=|.|.=.-++....-++-++++..|+.+|+.+.+++++..+. +++...+. -.+.-||||-.. |+.
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~--------~~d~IyVgGGNTF~LL~~ 101 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLM--------KADIIYVGGGNTFNLLQE 101 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhh--------hccEEEECCchHHHHHHH
Confidence 33444443333344455789999999999999999999976543 33443332 125567777644 667
Q ss_pred hhhcCchhHHhhcCCCCC
Q 047313 101 LHEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 101 l~e~G~L~~~L~~~~~~~ 118 (174)
|.+-|-+.-+.+.+.+..
T Consensus 102 lke~gld~iIr~~vk~G~ 119 (224)
T COG3340 102 LKETGLDDIIRERVKAGT 119 (224)
T ss_pred HHHhCcHHHHHHHHHcCC
Confidence 777787776666665544
No 300
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=64.93 E-value=17 Score=30.68 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=39.6
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHH----HhCCCcEEEEECCCC--HHH-----HHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLL----QSFKVTFYERDVSLH--MEF-----RDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL----~~~~v~~~e~Dv~~~--~~~-----~~el~~~~g~~~~~P~vFI 87 (174)
.+..+++|..+ +|++|+..--+| +.+|+.+..++++.. +.+ -..+.+.+| ...+|.+|+
T Consensus 150 ~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~Pal~L 219 (256)
T TIGR02739 150 QSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLG-VKYFPALYL 219 (256)
T ss_pred hceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcC-CccCceEEE
Confidence 44567777766 799999887777 458998888887543 111 112334445 678999985
No 301
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=64.91 E-value=9.6 Score=30.39 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=15.6
Q ss_pred CCCCcEEEECCEEEeccch
Q 047313 79 RVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~de 97 (174)
-..+|.++|||+|+=+...
T Consensus 165 I~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 165 LRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred CCCCCEEEECCEEEEcccc
Confidence 7799999999999765444
No 302
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=64.80 E-value=4.1 Score=31.29 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHh------cCCCCCCcEEEECCE-EEeccchhhhh
Q 047313 44 RTIRFLLQSFKVTFYERDV-SLHMEFRDELWSS------LSGRVIPPRLFIKGR-YIGGADEVVGL 101 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv-~~~~~~~~el~~~------~g~~~~~P~vFI~G~-~IGG~del~~l 101 (174)
..+..++.+.|++-.+.+- ..++..++.+.+- .| ...+|.++|||+ .+-|.+.+..|
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~g-v~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLG-VFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT-CSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcC-CcccCEEEECCEEEEECCCCHHHH
Confidence 3456667777775433332 2334444444332 34 789999999999 68888877554
No 303
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=64.69 E-value=5.7 Score=39.37 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=36.1
Q ss_pred CcEEEECCEEEe------------ccchhhhhhhcCchhHH----hhcCCCCCCCCCCCCCCCcceE------------e
Q 047313 82 PPRLFIKGRYIG------------GADEVVGLHEQGKLKKL----LEGIPRNLSDCSCNGCGNIRFV------------L 133 (174)
Q Consensus 82 ~P~vFI~G~~IG------------G~del~~l~e~G~L~~~----L~~~~~~~~~~~C~~Cgg~r~v------------~ 133 (174)
-|.|+|+-..|| =+|.+..|+..=...+. -..++-+.+.+.|..|.|.+++ +
T Consensus 684 ~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 763 (943)
T PRK00349 684 DKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 763 (943)
T ss_pred CceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCcccc
Confidence 366777776544 44666666543111110 1122333346779999998754 6
Q ss_pred CCCCCCCeeee
Q 047313 134 CSNCSGSCKVF 144 (174)
Q Consensus 134 C~~C~Gs~k~~ 144 (174)
|+.|+|.+..-
T Consensus 764 C~~C~G~R~~~ 774 (943)
T PRK00349 764 CDVCKGKRYNR 774 (943)
T ss_pred CccccCccccc
Confidence 88888886543
No 304
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=64.38 E-value=25 Score=30.62 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=37.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHH-------hCC--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ-------SFK--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRY 91 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~-------~~~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~ 91 (174)
-+|.|+++| |+.|.++...+. ..+ |.+..+|...+.+ +.+..+ ...+|.++ -+|+.
T Consensus 21 ~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD----LAQKYG-VSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH----HHHhCC-CccccEEEEEeCCcc
Confidence 466677764 999998765543 334 7788888876644 444556 77889873 45654
No 305
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=64.20 E-value=4.8 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=19.5
Q ss_pred EeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 132 VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
+.|+.|+..-++-.+.-...+ ..++|+.|...
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~--~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANG--GKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCC--CEEECCCCCCE
Confidence 678999887666543322111 26888888653
No 306
>PTZ00102 disulphide isomerase; Provisional
Probab=64.05 E-value=25 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=36.6
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHH-------hC--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQ-------SF--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGR 90 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~-------~~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~ 90 (174)
.-+|.|+++| |++|+++...+. .. .+.+-.+|...+.+ +.+..+ ...+|.++ -+|.
T Consensus 51 ~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~-i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFG-VRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcC-CCcccEEEEEECCc
Confidence 4667777764 999997765433 22 37788888877655 444445 67789874 3554
No 307
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=63.90 E-value=39 Score=25.29 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHH-------hCCCcEEEEECCCCH
Q 047313 39 TFEDCRTIRFLLQ-------SFKVTFYERDVSLHM 66 (174)
Q Consensus 39 ~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~ 66 (174)
.|+.|......|. ..++.+..++...++
T Consensus 72 ~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 72 WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 6999987554442 234666677665544
No 308
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=63.46 E-value=4 Score=23.02 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=12.6
Q ss_pred CCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 134 CSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 134 C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
|+.|.+....... +. +++|+.|+.
T Consensus 6 C~~CG~~t~~~~~-g~------~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPG-GW------ARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SS-SS-------EEESSSS-
T ss_pred cCcCCccccCCCC-cC------EeECCCCcC
Confidence 8888887665333 33 799999863
No 309
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=63.37 E-value=4.7 Score=34.09 Aligned_cols=34 Identities=32% Similarity=0.899 Sum_probs=17.4
Q ss_pred CCCCCCC--------------CcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 121 CSCNGCG--------------NIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 121 ~~C~~Cg--------------g~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
+.|.-|| |.||+-|+.|+..=+. ...+||.|.+.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-----------~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-----------VRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE-------------TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-----------cCCCCcCCCCC
Confidence 6799998 4689999999877433 24567777554
No 310
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=63.25 E-value=28 Score=27.36 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhc------------CC----------CCCCcEE--EECCEEE
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSL------------SG----------RVIPPRL--FIKGRYI 92 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~------------g~----------~~~~P~v--FI~G~~I 92 (174)
..+.=+.+-.+|+++||+|+.+=++.| ++...++.+-. |+ ..++|+| -|..+.+
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L 93 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKAL 93 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEeccCccccc
Confidence 556678899999999999999999987 44444443211 11 3467877 3677788
Q ss_pred eccchhhh
Q 047313 93 GGADEVVG 100 (174)
Q Consensus 93 GG~del~~ 100 (174)
+|.|.|..
T Consensus 94 ~GlDSL~S 101 (162)
T COG0041 94 SGLDSLLS 101 (162)
T ss_pred cchHHHHH
Confidence 88777643
No 311
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=62.84 E-value=4.5 Score=30.62 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCCCcEEEECCEEEeccchh
Q 047313 79 RVIPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~del 98 (174)
...+|.++|||+++-+...+
T Consensus 141 i~gTPt~iInG~~~~~~~~~ 160 (178)
T cd03019 141 ITGVPAFVVNGKYVVNPSAI 160 (178)
T ss_pred CCCCCeEEECCEEEEChhhc
Confidence 77899999999987555443
No 312
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=62.80 E-value=69 Score=25.04 Aligned_cols=24 Identities=4% Similarity=0.032 Sum_probs=15.6
Q ss_pred CChhHHHHHHHH----HhCCCcEEEEEC
Q 047313 39 TFEDCRTIRFLL----QSFKVTFYERDV 62 (174)
Q Consensus 39 ~c~~C~~vr~iL----~~~~v~~~e~Dv 62 (174)
.|+.|.+....| +..++.+.-+..
T Consensus 85 wCp~C~~~lp~l~~~~~~~~~~vv~Is~ 112 (189)
T TIGR02661 85 SCPVCDKLFPIIKSIARAEETDVVMISD 112 (189)
T ss_pred CChhHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 699998765444 445666666653
No 313
>PLN02309 5'-adenylylsulfate reductase
Probab=62.15 E-value=19 Score=32.85 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
+..-+|.|.++| |+.|+.+...|+.. +|.|-.+|+. .+..+ ..+..+ ...+|+|++
T Consensus 365 ~k~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~-I~~~PTil~ 428 (457)
T PLN02309 365 KEPWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQ-LGSFPTILL 428 (457)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCC-CceeeEEEE
Confidence 445677788875 99999888777542 4667777876 33332 222345 678999843
No 314
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=62.01 E-value=6 Score=23.49 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=17.5
Q ss_pred eEeCCCCCCC-eeeeecCCCCCCccccccCccccc
Q 047313 131 FVLCSNCSGS-CKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 131 ~v~C~~C~Gs-~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
-+||+.|.|+ ++.+.+.... ...-|..|+.
T Consensus 3 ~~pCP~CGG~DrFr~~d~~g~----G~~~C~~Cg~ 33 (37)
T smart00778 3 HGPCPNCGGSDRFRFDDKDGR----GTWFCSVCGA 33 (37)
T ss_pred ccCCCCCCCccccccccCCCC----cCEEeCCCCC
Confidence 4789999998 4444333221 1355666654
No 315
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=61.51 E-value=11 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECC
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVS 63 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~ 63 (174)
|.++.+|++|+.. .||+|..+...|+.. .+.+..+++.
T Consensus 3 ~~a~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDY------NCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 3455678888876 799999887776652 2567777663
No 316
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=61.37 E-value=50 Score=26.41 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=55.3
Q ss_pred CcchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313 7 ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL 85 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v 85 (174)
..+++.++-.+.. ....+|++-.|. +.. .=.+-..+++.|+.. |+.++.+++..++...+.+.+ .-.|
T Consensus 16 ~~~~l~~~l~~~~-~~~~~i~~IptA-s~~--~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~-------ad~I 84 (212)
T cd03146 16 ALPAIDDLLLSLT-KARPKVLFVPTA-SGD--RDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLE-------ADVI 84 (212)
T ss_pred chHHHHHHHHHhc-cCCCeEEEECCC-CCC--HHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhc-------CCEE
Confidence 4456666655443 233444444443 221 125677889999999 999988887654444444443 3357
Q ss_pred EECCEEEeccchhhhhhhcCchhHHhhcC
Q 047313 86 FIKGRYIGGADEVVGLHEQGKLKKLLEGI 114 (174)
Q Consensus 86 FI~G~~IGG~del~~l~e~G~L~~~L~~~ 114 (174)
|+.| |....+.+..+.-.|.++|+..
T Consensus 85 ~l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 85 YVGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred EECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 7777 5555554444444677777653
No 317
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=60.31 E-value=7 Score=27.12 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhCCCcEEEEEC
Q 047313 41 EDCRTIRFLLQSFKVTFYERDV 62 (174)
Q Consensus 41 ~~C~~vr~iL~~~~v~~~e~Dv 62 (174)
..=..++.+++++||+.+|+++
T Consensus 30 ~~~~tvkd~IEsLGVP~tEV~~ 51 (81)
T PF14451_consen 30 DGGATVKDVIESLGVPHTEVGL 51 (81)
T ss_pred CCCCcHHHHHHHcCCChHHeEE
Confidence 3445678888888888777765
No 318
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=60.03 E-value=12 Score=24.22 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=27.4
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
+.||++. .-.....++.+|++.||++...|-..... ... .| ....+.|+|..
T Consensus 1 ~~l~~~~------~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g-~~~~~~v~V~~ 52 (67)
T PF09413_consen 1 KKLYTAG------DPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PG-TGGQVEVYVPE 52 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS--------S---SSSEEEEEEG
T ss_pred CEEEEcC------CHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cC-ccCceEEEECH
Confidence 4577775 34678999999999999998887633221 111 23 44448888866
No 319
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=59.95 E-value=40 Score=28.40 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccchhhhhhhc----Cc
Q 047313 38 KTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADEVVGLHEQ----GK 106 (174)
Q Consensus 38 ~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~del~~l~e~----G~ 106 (174)
+..+.|..+-..|.. ..|+|..+..+.-+ +...+. ...+|.|+ .+|..++.+-.+..+.-. .+
T Consensus 156 ~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~-~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~d 229 (265)
T PF02114_consen 156 PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFP-DKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTED 229 (265)
T ss_dssp TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS--TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHH
T ss_pred CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCc-ccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHH
Confidence 478999999888876 35667777653211 122223 56789985 599998887766554322 37
Q ss_pred hhHHhhcCCCCC
Q 047313 107 LKKLLEGIPRNL 118 (174)
Q Consensus 107 L~~~L~~~~~~~ 118 (174)
|+.+|..++...
T Consensus 230 lE~~L~~~G~l~ 241 (265)
T PF02114_consen 230 LEAFLIEYGVLP 241 (265)
T ss_dssp HHHHHHTTTSSS
T ss_pred HHHHHHHcCCCC
Confidence 889998888765
No 320
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.86 E-value=20 Score=25.40 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=40.6
Q ss_pred CChhHHHHHHHHHhCCC--cEEEEECCCCHHHH-HHHHHhcC-CCCCCcEEEECCE-EEeccchhhhhhhc
Q 047313 39 TFEDCRTIRFLLQSFKV--TFYERDVSLHMEFR-DELWSSLS-GRVIPPRLFIKGR-YIGGADEVVGLHEQ 104 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v--~~~e~Dv~~~~~~~-~el~~~~g-~~~~~P~vFI~G~-~IGG~del~~l~e~ 104 (174)
.|+.|....+++..... .+..+|+..++... -+-..+.. ...+.-.+.-+|+ ...|.+.+..+...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 59999999999998764 68889994333321 11111111 0122233323776 88999998887665
No 321
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=58.29 E-value=20 Score=27.10 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhcCchhHHhhc
Q 047313 44 RTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEG 113 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~ 113 (174)
+++++.|+++|+.++.+|+... .+..+.+.+ .-.|||.| |....+.+..+.-.|.+.|+.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~-------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIRE-------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHH-------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHh-------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 5789999999999999999774 222222322 33455544 233333333344446665554
No 322
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=58.07 E-value=28 Score=29.17 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=38.6
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCC--CHHHH-----HHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSL--HMEFR-----DELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~--~~~~~-----~el~~~~g~~~~~P~vFI 87 (174)
.+..+++|..+ +|++|+..--+|+ .+|+.+.-+.++. .+.+. ....+.+| ...+|.+|+
T Consensus 143 ~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~PAl~L 212 (248)
T PRK13703 143 EHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG-VKYFPALML 212 (248)
T ss_pred hcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC-CcccceEEE
Confidence 45677777776 8999998777775 4788887777643 12211 11223455 678899986
No 323
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=57.97 E-value=5.7 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCCCCCCCCcceEeCCCCCCCeeeeecCC
Q 047313 120 DCSCNGCGNIRFVLCSNCSGSCKVFRDGD 148 (174)
Q Consensus 120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~ 148 (174)
...+..-.|..+++|+.|+|+.++..+.+
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eqe 55 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQE 55 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccch
Confidence 34677788999999999999999976553
No 324
>PHA00626 hypothetical protein
Probab=57.92 E-value=7.7 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=8.3
Q ss_pred CCCCCCcceEeCCCCCC
Q 047313 123 CNGCGNIRFVLCSNCSG 139 (174)
Q Consensus 123 C~~Cgg~r~v~C~~C~G 139 (174)
|..||-.-.+-|..|.+
T Consensus 3 CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCceeeeeceecc
Confidence 45555444444444444
No 325
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.85 E-value=32 Score=31.01 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGA 95 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~ 95 (174)
++-...-|.+- +|..|-.|.+.|.-+ +|+..-+|= .-+++|...+. --.+|.||+||+..|.-
T Consensus 116 g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~IdG---a~Fq~Evear~--IMaVPtvflnGe~fg~G 183 (520)
T COG3634 116 GDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAIDG---ALFQDEVEARN--IMAVPTVFLNGEEFGQG 183 (520)
T ss_pred CceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEecc---hhhHhHHHhcc--ceecceEEEcchhhccc
Confidence 44556666664 677777777766543 344555543 45677776652 56799999999987643
No 326
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=56.39 E-value=10 Score=26.88 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHHh
Q 047313 39 TFEDCRTIRFLLQS 52 (174)
Q Consensus 39 ~c~~C~~vr~iL~~ 52 (174)
.|+.|......|..
T Consensus 31 ~C~~C~~~~~~l~~ 44 (123)
T cd03011 31 WCPVCRFTSPTVNQ 44 (123)
T ss_pred cChhhhhhChHHHH
Confidence 69999988766654
No 327
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=55.40 E-value=22 Score=27.60 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=26.7
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM 66 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~ 66 (174)
+|.|.+-|.+ .-+..++++.+|+.+|++|+.+-++.|+
T Consensus 2 ~V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 2 KVAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred eEEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3555555432 5688999999999999999988888764
No 328
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=55.12 E-value=11 Score=22.53 Aligned_cols=24 Identities=29% Similarity=0.851 Sum_probs=14.5
Q ss_pred eCCCCCCCeeeeecCCCCCCccccccCccc
Q 047313 133 LCSNCSGSCKVFRDGDDDDDDELHIRCPEC 162 (174)
Q Consensus 133 ~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~C 162 (174)
.|+.|+.+. ++.+...+ .+-|+.|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g-----~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERG-----ELVCPNC 25 (43)
T ss_dssp SBTTTSSSE-EEEETTTT-----EEEETTT
T ss_pred CCcCCcCCc-eEEcCCCC-----eEECCCC
Confidence 378888766 44443221 4678877
No 329
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=54.19 E-value=88 Score=25.27 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=52.2
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-------------------HHHHHHHHhcCCCCCC
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-------------------EFRDELWSSLSGRVIP 82 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-------------------~~~~el~~~~g~~~~~ 82 (174)
..++|+||.-- + .-=-+...+++..+.-+-.+|++.++ ...++..+.++ ...+
T Consensus 2 sagrVivYGGk------G-ALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~-gekv 73 (236)
T KOG4022|consen 2 SAGRVIVYGGK------G-ALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQ-GEKV 73 (236)
T ss_pred CCceEEEEcCc------c-hHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhc-cccc
Confidence 46899999863 1 22344566788888888888875432 12333344444 4566
Q ss_pred cEEE-ECCEEEeccchhhhhhhcCchh
Q 047313 83 PRLF-IKGRYIGGADEVVGLHEQGKLK 108 (174)
Q Consensus 83 P~vF-I~G~~IGG~del~~l~e~G~L~ 108 (174)
-.|| |.|-+-||-..-+.|.++-+|.
T Consensus 74 Dav~CVAGGWAGGnAksKdl~KNaDLM 100 (236)
T KOG4022|consen 74 DAVFCVAGGWAGGNAKSKDLVKNADLM 100 (236)
T ss_pred ceEEEeeccccCCCcchhhhhhchhhH
Confidence 6665 8888999988888888877774
No 330
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=53.02 E-value=59 Score=24.12 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCcEEEEEeecCC--CCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHH---HHHH--hcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRG--IRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRD---ELWS--SLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~--ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~---el~~--~~g~~~~~P~vFI 87 (174)
..+++.||.++... -+.=||+|.++.-+++. .+..+.++.|..-+..++ .++. .+. -..+|+|.-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~-l~~IPTLi~ 95 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK-LKGIPTLIR 95 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee-eeecceEEE
Confidence 33556555554322 22339999999866654 245677788754333322 2333 233 567899974
No 331
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=52.88 E-value=22 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECC
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVS 63 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~ 63 (174)
.++.+|++|+.. .||+|..+-..+... ++.|..+.+.
T Consensus 14 ~~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 455677777775 799999887776542 4566666654
No 332
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=52.75 E-value=14 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=13.9
Q ss_pred EEECCEEEeccchhhhhh
Q 047313 85 LFIKGRYIGGADEVVGLH 102 (174)
Q Consensus 85 vFI~G~~IGG~del~~l~ 102 (174)
||+||.+||=.++-.+|.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999887654443
No 333
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=52.42 E-value=38 Score=22.70 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=16.2
Q ss_pred CChhHHHHHHHHHh--------CCCcEEEEECCCC
Q 047313 39 TFEDCRTIRFLLQS--------FKVTFYERDVSLH 65 (174)
Q Consensus 39 ~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~ 65 (174)
.|+.|.+....|.. .++.+..+.+..+
T Consensus 12 ~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 12 WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 58889887777654 2444555555544
No 334
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=52.40 E-value=11 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCcEEEE
Q 047313 44 RTIRFLLQSFKVTFYER 60 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~ 60 (174)
..+|++|+.++|++...
T Consensus 535 ~~~k~~LE~L~v~H~~~ 551 (1337)
T PRK14714 535 PTVKRTLELLLVPHTVR 551 (1337)
T ss_pred HHHHHHHHHhCCceEec
Confidence 46888888888876554
No 335
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=52.16 E-value=33 Score=29.83 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHh--------C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS--------F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~--------~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
+..-+|.|.++| |+.|......++. . ++.+-.+|++.+. +.. .+ ...+|.+++
T Consensus 364 ~~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~-i~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYAPW------CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FE-VEGFPTIKF 425 (462)
T ss_pred CCeEEEEEECCC------CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CC-ccccCEEEE
Confidence 344566677765 9999988777754 1 5678888887653 222 33 678898865
No 336
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=51.66 E-value=21 Score=29.96 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=41.4
Q ss_pred HhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc---------EEEEEC--CCC-------HHHHHHHHHhc
Q 047313 15 EEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT---------FYERDV--SLH-------MEFRDELWSSL 76 (174)
Q Consensus 15 ~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~---------~~e~Dv--~~~-------~~~~~el~~~~ 76 (174)
....++....-|.|||+. +|.-|--+-+.|..+--. +++-|- ..| .+.+..+.+.+
T Consensus 34 ~~~~~~k~~~VVELfTSQ------GCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~ 107 (261)
T COG5429 34 HAQSAAKPLGVVELFTSQ------GCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAF 107 (261)
T ss_pred ccCCCCCCceEEEEeecC------CcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhh
Confidence 344455556678889986 899998888888764221 233332 112 22233344444
Q ss_pred CC-CCCCcEEEECCEE
Q 047313 77 SG-RVIPPRLFIKGRY 91 (174)
Q Consensus 77 g~-~~~~P~vFI~G~~ 91 (174)
+. ..-.||+||+|+.
T Consensus 108 g~~~vyTPQavvnGr~ 123 (261)
T COG5429 108 GARGVYTPQAVVNGRV 123 (261)
T ss_pred ccCCCCCchheeechh
Confidence 41 3445999999973
No 337
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=51.04 E-value=10 Score=23.30 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=8.5
Q ss_pred cccCcccccCcc
Q 047313 156 HIRCPECNENGL 167 (174)
Q Consensus 156 ~~rC~~CnenGl 167 (174)
.+|||.|.-+=|
T Consensus 19 ~irC~~CG~rIl 30 (44)
T smart00659 19 VVRCRECGYRIL 30 (44)
T ss_pred ceECCCCCceEE
Confidence 588888876543
No 338
>PTZ00102 disulphide isomerase; Provisional
Probab=51.02 E-value=33 Score=30.30 Aligned_cols=54 Identities=7% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF--------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~--------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
..-+|.|.++ -|+.|+.+...|+.. .+.+..+|.+.+... .+..+ ...+|.+++
T Consensus 376 k~vlv~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~-v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYAP------WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFS-WSAFPTILF 437 (477)
T ss_pred CCEEEEEECC------CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCC-CcccCeEEE
Confidence 3445555665 499999888877642 245677787665442 22333 667898843
No 339
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=49.67 E-value=82 Score=24.05 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=24.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh--------------CCCcEEEEECCCCHH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS--------------FKVTFYERDVSLHME 67 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~--------------~~v~~~e~Dv~~~~~ 67 (174)
.|+||..+. -|+.|.+..-.|.. .++.+..+++..+.+
T Consensus 27 ~vlL~FwAs-----WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 27 VLLLFFGAV-----VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred EEEEEEECC-----CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 466666552 59999998877754 145666666655544
No 340
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=49.57 E-value=16 Score=22.28 Aligned_cols=24 Identities=29% Similarity=0.769 Sum_probs=14.8
Q ss_pred CCCCCCCeeeeecCCCCCCccccccCcccc
Q 047313 134 CSNCSGSCKVFRDGDDDDDDELHIRCPECN 163 (174)
Q Consensus 134 C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cn 163 (174)
|+.|+.. +++.-... ...+|.+|.
T Consensus 21 CP~Cg~~-~~~~~~~~-----~~~~C~~C~ 44 (46)
T PF12760_consen 21 CPHCGST-KHYRLKTR-----GRYRCKACR 44 (46)
T ss_pred CCCCCCe-eeEEeCCC-----CeEECCCCC
Confidence 8888887 44433322 157787775
No 341
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=49.27 E-value=16 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.794 Sum_probs=14.7
Q ss_pred CCCCCCCCCc------ceEeCCCCCCCeee
Q 047313 120 DCSCNGCGNI------RFVLCSNCSGSCKV 143 (174)
Q Consensus 120 ~~~C~~Cgg~------r~v~C~~C~Gs~k~ 143 (174)
...|..||-. .|..|+.|++....
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 4568888733 34448888776433
No 342
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.23 E-value=27 Score=25.87 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECC
Q 047313 35 GIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKG 89 (174)
Q Consensus 35 ~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G 89 (174)
|.|--|++|..+.-+|..+ .+.++.+|... =|.++.+++|. ..++|++..++
T Consensus 19 G~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 19 GQRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CceEECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCC
Confidence 3445799999999999874 45666666643 35677778875 67899998766
No 343
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=48.93 E-value=44 Score=28.96 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313 39 TFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~ 100 (174)
+|..+.+++.+|+.+ .+.|.-+||+. ++.++..+.+. ...+|.|-|.| .+|.|++...
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~l~ 146 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELP-LGNFSHVRCAG-LLGTYDDGLA 146 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhh-hccCCCeEEEE-EEecHHHHHh
Confidence 578999999988865 36699999964 33333333321 24566666665 4555555433
No 344
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.51 E-value=57 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.7
Q ss_pred CCCCcEEEECCEE-Eeccchhhh
Q 047313 79 RVIPPRLFIKGRY-IGGADEVVG 100 (174)
Q Consensus 79 ~~~~P~vFI~G~~-IGG~del~~ 100 (174)
...+|.++|||++ +.|+.....
T Consensus 173 v~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 173 ISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred CCcCCEEEECCeEeecCCCCHHH
Confidence 6789999999886 577765433
No 345
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.89 E-value=21 Score=35.84 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=30.3
Q ss_pred CCCCCCCCCCc-ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc-ccCCCCC
Q 047313 119 SDCSCNGCGNI-RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL-VKCPFCS 174 (174)
Q Consensus 119 ~~~~C~~Cgg~-r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl-~~C~~C~ 174 (174)
....|..||-. -+..|+.|+.... ...+||.|-..+- -.||.|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te------------~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTE------------PVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCC------------cceeCccccCcCCCCcCCCCC
Confidence 45679999976 4458999987611 2578888865543 4688884
No 346
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=47.35 E-value=91 Score=21.41 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313 39 TFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF 86 (174)
.|+.|......|+.. ++.+..+ ...+.+....+.+..+ ...+|.++
T Consensus 32 wC~~C~~~~p~l~~~~~~~~~~~~vi~v-~~~~~~~~~~~~~~~~-~~~~p~~~ 83 (114)
T cd02967 32 TCPVCKKLLPVIRSIARAEADWLDVVLA-SDGEKAEHQRFLKKHG-LEAFPYVL 83 (114)
T ss_pred CCcchHhHhHHHHHHHHHhcCCcEEEEE-eCCCHHHHHHHHHHhC-CCCCcEEe
Confidence 599999876666542 2333322 1233333444444443 33477654
No 347
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=46.14 E-value=1.1e+02 Score=21.94 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313 39 TFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 39 ~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF 86 (174)
.|+.|.+-...|. ..++.+.-+......... .+.+.. ..++|.+.
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~--~~~~p~~~ 86 (149)
T cd02970 35 GCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK--FLPFPVYA 86 (149)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc--CCCCeEEE
Confidence 5999987444443 356666666654433333 344433 35677554
No 348
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=46.04 E-value=12 Score=22.11 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=18.6
Q ss_pred EeCCCCCCCeeeeecCC---CCCCccccccCccccc
Q 047313 132 VLCSNCSGSCKVFRDGD---DDDDDELHIRCPECNE 164 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~---~~~~~~~~~rC~~Cne 164 (174)
+.|+.|+...-++.... ..++-.++.+|..|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 36889988766664321 2233346888998875
No 349
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=45.51 E-value=63 Score=30.83 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=48.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC----CCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch-h-
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS----LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE-V- 98 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~----~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de-l- 98 (174)
.|+|.++.. .-..+.+|...|++.||..+.+|+. .|.+....+.+. .-..|.+.+..+||+-. +
T Consensus 546 dvtIva~G~-----~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~-----~~~vVt~Ee~~~GG~Gs~Va 615 (641)
T PLN02234 546 RVALLGYGS-----AVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS-----HEVLITVEEGSIGGFGSHVV 615 (641)
T ss_pred CEEEEEecH-----HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh-----CCEEEEECCCCCCcHHHHHH
Confidence 566666652 4578999999999999999999985 355544333322 12345566667798833 3
Q ss_pred hhhhhcCchhHHh
Q 047313 99 VGLHEQGKLKKLL 111 (174)
Q Consensus 99 ~~l~e~G~L~~~L 111 (174)
..|.++|-++..+
T Consensus 616 ~~l~e~~~~~~~~ 628 (641)
T PLN02234 616 QFLALDGLLDGKL 628 (641)
T ss_pred HHHHHcCCCCCCc
Confidence 3445555555544
No 350
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=45.50 E-value=19 Score=34.16 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=31.7
Q ss_pred CCCCCCCCCcceE----eCCCCCCCeeeeecCCCCCCccccc-----cCcccccCcc
Q 047313 120 DCSCNGCGNIRFV----LCSNCSGSCKVFRDGDDDDDDELHI-----RCPECNENGL 167 (174)
Q Consensus 120 ~~~C~~Cgg~r~v----~C~~C~Gs~k~~~~~~~~~~~~~~~-----rC~~CnenGl 167 (174)
...|..|.|.+-| .|+.|+|+.|++.-+.-+. .+. -|+.|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~---~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGD---IIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccc---eecCcccccChhHhhCCc
Confidence 3479999988765 6999999999986553311 122 4888877764
No 351
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=45.02 E-value=23 Score=22.15 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=17.8
Q ss_pred EeCCCCCCCeeeeecC-CCCCCccccccCcccccCc
Q 047313 132 VLCSNCSGSCKVFRDG-DDDDDDELHIRCPECNENG 166 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~-~~~~~~~~~~rC~~CnenG 166 (174)
.||+.|+|--+.+... ...+... ...|+.|.--|
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~ 36 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASG 36 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCc
Confidence 4799998765544311 1111111 23788887554
No 352
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=43.15 E-value=1.3e+02 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.012 Sum_probs=25.3
Q ss_pred CChhHHHHHHHH-------HhCCCcEEEEECCCCHHHHHHHHH
Q 047313 39 TFEDCRTIRFLL-------QSFKVTFYERDVSLHMEFRDELWS 74 (174)
Q Consensus 39 ~c~~C~~vr~iL-------~~~~v~~~e~Dv~~~~~~~~el~~ 74 (174)
.||.|..-.-.| ...++.+..+....++..++.+.+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 499998655333 346788989988888886555555
No 353
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=43.10 E-value=22 Score=37.78 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=32.9
Q ss_pred EEeccchhhhhhhcCchhHHhhcCCC-----CCCCCCCCCCCCcce---------EeCCCCCCCeee
Q 047313 91 YIGGADEVVGLHEQGKLKKLLEGIPR-----NLSDCSCNGCGNIRF---------VLCSNCSGSCKV 143 (174)
Q Consensus 91 ~IGG~del~~l~e~G~L~~~L~~~~~-----~~~~~~C~~Cgg~r~---------v~C~~C~Gs~k~ 143 (174)
|+|=+|++.+|+.+=...+... +++ +.+.+.|..|.|.+. ++|+.|+|.+..
T Consensus 687 Y~g~fd~IR~lFA~~~~ak~~g-~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 687 YIKAFDDLRELFAEQPRSKRLG-LTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred ehhhhHHHHHHHhhChHHHHcC-CCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 4444667777765543333222 222 224668999999985 589999997654
No 354
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=42.87 E-value=13 Score=35.20 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=12.5
Q ss_pred cceEeCCCCCCCeeeee
Q 047313 129 IRFVLCSNCSGSCKVFR 145 (174)
Q Consensus 129 ~r~v~C~~C~Gs~k~~~ 145 (174)
.+-+||+.|+|..++-+
T Consensus 51 ~~~~pc~~c~gkG~V~v 67 (715)
T COG1107 51 SFEIPCPKCRGKGTVTV 67 (715)
T ss_pred cCCCCCCeeccceeEEE
Confidence 34578999998887753
No 355
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=42.86 E-value=1.7e+02 Score=23.40 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=38.5
Q ss_pred cchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc-EEEEECC-----CCHHHHHHHHH
Q 047313 8 SPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT-FYERDVS-----LHMEFRDELWS 74 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~-~~e~Dv~-----~~~~~~~el~~ 74 (174)
...+..|-+... ....+|++-.+... ....++.+...+|+++|+. .+.+++. .+++..+.+.+
T Consensus 15 ~~i~~~~~~~ag-~~~~~i~~iptA~~---~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ 83 (217)
T cd03145 15 RAILQRFVARAG-GAGARIVVIPAASE---EPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD 83 (217)
T ss_pred HHHHHHHHHHcC-CCCCcEEEEeCCCc---ChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh
Confidence 344455555553 23456655555432 1367789999999999985 6777775 45555555544
No 356
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=42.35 E-value=1.5e+02 Score=22.42 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=42.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHH----hCC---CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEecc
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFK---VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGA 95 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~---v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~ 95 (174)
..|||.++ ....+|....+--+|. .++ +.+-.+|+..+++ +...+| -..+|.+ |-||+++|-.
T Consensus 36 ~~vl~~~g---dp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~fg-V~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 36 DGVVLLSS---DPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRFG-VFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred cEEEEeCC---CCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHcC-CccCCEEEEEECCEEEEEE
Confidence 45555543 3345666655555554 333 6788889987765 455556 7889988 5699998766
Q ss_pred chh
Q 047313 96 DEV 98 (174)
Q Consensus 96 del 98 (174)
.-+
T Consensus 108 ~G~ 110 (132)
T PRK11509 108 NGI 110 (132)
T ss_pred eCc
Confidence 544
No 357
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.29 E-value=22 Score=30.88 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=7.8
Q ss_pred CcceEeCCCCCCC
Q 047313 128 NIRFVLCSNCSGS 140 (174)
Q Consensus 128 g~r~v~C~~C~Gs 140 (174)
|.||+-|+.|+..
T Consensus 209 G~RyL~CslC~te 221 (309)
T PRK03564 209 GLRYLHCNLCESE 221 (309)
T ss_pred CceEEEcCCCCCc
Confidence 3466666666654
No 358
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=41.11 E-value=42 Score=20.59 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=26.6
Q ss_pred cceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccccCC
Q 047313 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCP 171 (174)
Q Consensus 129 ~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~C~ 171 (174)
.+.+-|..|+.........+.. ...+|...++.|. .|+
T Consensus 3 ~g~l~C~~CG~~m~~~~~~~~~----~yy~C~~~~~~~~-~C~ 40 (58)
T PF13408_consen 3 SGLLRCGHCGSKMTRRKRKGKY----RYYRCSNRRRKGK-GCP 40 (58)
T ss_pred CCcEEcccCCcEeEEEECCCCc----eEEEcCCCcCCCC-CCC
Confidence 3578899998886665444221 4799999998886 365
No 359
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=41.08 E-value=15 Score=24.16 Aligned_cols=19 Identities=42% Similarity=1.135 Sum_probs=15.3
Q ss_pred cccCcccccCccc-cCCCCC
Q 047313 156 HIRCPECNENGLV-KCPFCS 174 (174)
Q Consensus 156 ~~rC~~CnenGl~-~C~~C~ 174 (174)
..+|+.|.+--|. .||.|.
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG 24 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCG 24 (59)
T ss_pred hhcCcCCCceeecccCCCCC
Confidence 5788888888888 888884
No 360
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=41.07 E-value=29 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=17.9
Q ss_pred EeCCCCCCCeeeeecCCCCCC--ccccccCccccc
Q 047313 132 VLCSNCSGSCKVFRDGDDDDD--DELHIRCPECNE 164 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~~~~~--~~~~~rC~~Cne 164 (174)
|.|+.|+...-... +.|++. . ...||.+|-|
T Consensus 106 ~~cp~c~s~~t~~~-s~fg~t~ck-a~~~c~~c~e 138 (146)
T TIGR02159 106 VQCPRCGSADTTIT-SIFGPTACK-ALYRCRACKE 138 (146)
T ss_pred CcCCCCCCCCcEee-cCCCChhhH-HHhhhhhhCC
Confidence 77888876644443 344221 2 2567777766
No 361
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=40.92 E-value=18 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=13.9
Q ss_pred ceEeCCCCCCC-eeeeecC-CCCCCccccccCcccc
Q 047313 130 RFVLCSNCSGS-CKVFRDG-DDDDDDELHIRCPECN 163 (174)
Q Consensus 130 r~v~C~~C~Gs-~k~~~~~-~~~~~~~~~~rC~~Cn 163 (174)
+-.||+.|.|+ ++.+..+ ... ...-|..|+
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~----G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGR----GTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT--------S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccC----CCEECCCCC
Confidence 35799999999 4442333 221 145677773
No 362
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=40.85 E-value=27 Score=20.77 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=19.6
Q ss_pred eCCCCCCCeeeeecC---CCCCCccccccCccccc
Q 047313 133 LCSNCSGSCKVFRDG---DDDDDDELHIRCPECNE 164 (174)
Q Consensus 133 ~C~~C~Gs~k~~~~~---~~~~~~~~~~rC~~Cne 164 (174)
+|+.|+...-++... ...++-..+-.|..|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 588997665555322 11233346889998874
No 363
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=40.81 E-value=1.1e+02 Score=20.36 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=44.2
Q ss_pred HhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 11 LKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
|.++.++-+- ..+|.+.+-++ -.+=...++.++.++.++..+-+..+. ..++.+.++ ...+|.++|
T Consensus 23 l~~l~~~~~~--~~~v~~v~Vs~------d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~-i~~iP~~~l 88 (95)
T PF13905_consen 23 LKELYKKYKK--KDDVEFVFVSL------DEDEEEWKKFLKKNNFPWYNVPFDDDN--NSELLKKYG-INGIPTLVL 88 (95)
T ss_dssp HHHHHHHHTT--TTTEEEEEEE-------SSSHHHHHHHHHTCTTSSEEEETTTHH--HHHHHHHTT--TSSSEEEE
T ss_pred HHHHHHHhCC--CCCEEEEEEEe------CCCHHHHHHHHHhcCCCceEEeeCcch--HHHHHHHCC-CCcCCEEEE
Confidence 4445555542 45566666553 256778899999998887777665433 567888887 888999986
No 364
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=21 Score=31.40 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=5.8
Q ss_pred cccCcccccCc
Q 047313 156 HIRCPECNENG 166 (174)
Q Consensus 156 ~~rC~~CnenG 166 (174)
...|..|+-.|
T Consensus 256 ~k~C~TC~gtg 266 (406)
T KOG2813|consen 256 KKPCTTCSGTG 266 (406)
T ss_pred CcccccccCcc
Confidence 34555555544
No 365
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=40.06 E-value=26 Score=26.75 Aligned_cols=42 Identities=26% Similarity=0.680 Sum_probs=23.7
Q ss_pred cchhhhhhhcCchhHHhhcCCCCCCCCCCCCCCCc--ceEeCCCCCCC
Q 047313 95 ADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNI--RFVLCSNCSGS 140 (174)
Q Consensus 95 ~del~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~--r~v~C~~C~Gs 140 (174)
.+.|..+..+|.|. +...+.. .-.|+.||-. .--.|+.|...
T Consensus 60 ~~~I~~~IreGRL~--~~~~~nl--~~~CE~CG~~I~~Gr~C~~C~~~ 103 (137)
T TIGR03826 60 EKLILKFIREGRLQ--LKHFPNL--GYPCERCGTSIREGRLCDSCAGE 103 (137)
T ss_pred HHHHHHHHHcCCee--ccCCCCC--cCcccccCCcCCCCCccHHHHHH
Confidence 35677777888776 2333322 3568888762 12346666543
No 366
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.86 E-value=53 Score=26.11 Aligned_cols=64 Identities=14% Similarity=0.280 Sum_probs=38.9
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCH------------HHHHHHHHhcC
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---------KVTFYERDVSLHM------------EFRDELWSSLS 77 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---------~v~~~e~Dv~~~~------------~~~~el~~~~g 77 (174)
.|.+..-+.||.+. +|++|.+.++-+... ++.+.+++++... .--+||.+..+
T Consensus 39 ~~~~Kylllmfes~------~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 39 SPNDKYLLLMFESN------GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred CccCcEEEEEEcCC------CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 45666677888876 899999988765431 2345556654321 11345666666
Q ss_pred CCCCCcEE-EECC
Q 047313 78 GRVIPPRL-FIKG 89 (174)
Q Consensus 78 ~~~~~P~v-FI~G 89 (174)
.++.|.+ |.|+
T Consensus 113 -vrstPtfvFfdk 124 (182)
T COG2143 113 -VRSTPTFVFFDK 124 (182)
T ss_pred -cccCceEEEEcC
Confidence 6777776 4444
No 367
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=39.54 E-value=4.1 Score=27.39 Aligned_cols=35 Identities=23% Similarity=0.684 Sum_probs=17.9
Q ss_pred eCCCCCCC-eeeeecCCCCCCccccccCcccccCccc
Q 047313 133 LCSNCSGS-CKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 133 ~C~~C~Gs-~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
.|..|+.. .+.+..... +.+.+.++||.|+..=|+
T Consensus 6 TC~~C~~Rs~~~~sk~aY-~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAY-HKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp EETTTTEEEEEEEEHHHH-HTSEEEEE-TTS--EEES
T ss_pred EcCCCCCccceeeCHHHH-hCCeEEEECCCCcceeee
Confidence 47777655 334433322 123478999999876544
No 368
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=39.46 E-value=14 Score=33.32 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=69.4
Q ss_pred hCCCCCCCcEEEEEeecCCCCCCChh-HHHHHHHHHhCCCcEEEEECCCC---HHH--HHHHHHhcC--------CCCCC
Q 047313 17 KCPPGGEDSVIFYTTSLRGIRKTFED-CRTIRFLLQSFKVTFYERDVSLH---MEF--RDELWSSLS--------GRVIP 82 (174)
Q Consensus 17 ~~~~~~~~~VvlYttsl~~ir~~c~~-C~~vr~iL~~~~v~~~e~Dv~~~---~~~--~~el~~~~g--------~~~~~ 82 (174)
.+||-+++.| +|.-. -.++. =.++.+++....+.+..++.+.. ..+ ...+.++.. ....-
T Consensus 205 ~i~P~t~~PV-l~GIR-----g~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl~~~~~l~d~~~~~~~~v~g~v~~~ 278 (421)
T COG1571 205 LIPPHTPNPV-LYGIR-----GAVPEVLLKAMSLIKRELVERSAIFETNQATDDHLVDKGKLNDIEDYSKYRVVGRVEAE 278 (421)
T ss_pred ccCCCCCCCE-EEEEe-----cCCHHHHHHHHHHHhccCcceEEEEeccchhhhhccccchhhhhhhccceEEEEEEecc
Confidence 4577777776 66543 34554 35666677666777777776532 111 111333321 12356
Q ss_pred cEEEECCEEEeccc------hhhhhhhcCchhHHhhcCCCCCCCCCCCCCCC--------------------cceEeCCC
Q 047313 83 PRLFIKGRYIGGAD------EVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGN--------------------IRFVLCSN 136 (174)
Q Consensus 83 P~vFI~G~~IGG~d------el~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg--------------------~r~v~C~~ 136 (174)
|+...+|+.|.-.. ........+++..+...+.... .=..+|+ ..-..|+.
T Consensus 279 p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD---~i~~~G~~~~~~~n~ek~~v~~l~~~~~~~p~Cp~ 355 (421)
T COG1571 279 PRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGD---EITVYGSVKPGTLNLEKFQVLKLARYERVNPVCPR 355 (421)
T ss_pred cEEeeCCEEEEEecCCCceEEEEEecccccchHHHHhcCCCC---EEEEecCccccceeEEEEEEEEeeeeEEcCCCCCc
Confidence 88888887664331 1233334445555444333221 1111222 12236999
Q ss_pred CCCCeeeeecCCCCCCccccccCccccc
Q 047313 137 CSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 137 C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
|+|+.||.-.+ + .||+.|..
T Consensus 356 Cg~~m~S~G~~-g-------~rC~kCg~ 375 (421)
T COG1571 356 CGGRMKSAGRN-G-------FRCKKCGT 375 (421)
T ss_pred cCCchhhcCCC-C-------cccccccc
Confidence 99999986555 2 57888754
No 369
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=39.39 E-value=44 Score=24.26 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=32.4
Q ss_pred CChhH-HHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313 39 TFEDC-RTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIG 93 (174)
Q Consensus 39 ~c~~C-~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IG 93 (174)
.|..| .+++++|.+.+|+...+-+.. +.+.- -..++++.. -.|-.||+|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~~---~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGPQ---ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcCC---cceeeCCEEEE
Confidence 58888 667899999999987777743 21111 233344311 45677888765
No 370
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=39.36 E-value=16 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=15.4
Q ss_pred EeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 132 VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
..|+.|+..-.. .... ...+||.|+..
T Consensus 4 y~C~~CG~~~~~--~~~~-----~~~~Cp~CG~~ 30 (46)
T PRK00398 4 YKCARCGREVEL--DEYG-----TGVRCPYCGYR 30 (46)
T ss_pred EECCCCCCEEEE--CCCC-----CceECCCCCCe
Confidence 357777764222 1211 15889999764
No 371
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=39.21 E-value=1.3e+02 Score=20.81 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=30.5
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
..++|+..+. ..|+.|.....-|. ..++.+..+......+.++.+.+. ...+|.+.-
T Consensus 26 k~~vl~f~~~----~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~---~~~~~~~~D 89 (124)
T PF00578_consen 26 KPVVLFFWPT----AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY---GLPFPVLSD 89 (124)
T ss_dssp SEEEEEEEST----TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH---TCSSEEEEE
T ss_pred CcEEEEEeCc----cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh---ccccccccC
Confidence 3455555442 15999965554433 346777777775444444444433 255666543
No 372
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=39.17 E-value=22 Score=29.66 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCCCcEEEE--CCEEEeccchhhhh----hhcCchhHHhhcCCCCC
Q 047313 79 RVIPPRLFI--KGRYIGGADEVVGL----HEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 79 ~~~~P~vFI--~G~~IGG~del~~l----~e~G~L~~~L~~~~~~~ 118 (174)
...+|.+.| +|+.||.|-.+.+- +..|+|..+|..++...
T Consensus 209 ~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred ccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCc
Confidence 346787754 99999998655443 45689999998877543
No 373
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.91 E-value=22 Score=19.34 Aligned_cols=6 Identities=50% Similarity=1.425 Sum_probs=2.5
Q ss_pred ccCccc
Q 047313 157 IRCPEC 162 (174)
Q Consensus 157 ~rC~~C 162 (174)
..||.|
T Consensus 15 ~~Cp~C 20 (26)
T PF10571_consen 15 KFCPHC 20 (26)
T ss_pred CcCCCC
Confidence 344444
No 374
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=38.79 E-value=33 Score=26.80 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=47.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCc------------EEEEE--CCCCHHHHHHHHHhc--------------
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT------------FYERD--VSLHMEFRDELWSSL-------------- 76 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~------------~~e~D--v~~~~~~~~el~~~~-------------- 76 (174)
++.|=+..+++-..+-..=.++..+|+.+||+ |.+.| +.||++..+.|.+..
T Consensus 39 ~~~iDSagt~~yh~G~~PD~R~~s~lK~hGI~~~H~aRqit~~DF~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV~Ll 118 (159)
T KOG3217|consen 39 EWHIDSAGTSGYHTGRSPDPRTLSILKKHGIKIDHLARQITTSDFREFDYILAMDESNLRDLLRKASNQPKGSKAKVLLL 118 (159)
T ss_pred eeeeccccccccccCCCCChHHHHHHHHcCCcchhhcccccHhHhhhcceeEEecHHHHHHHHHHhccCCCCcceEEEEe
Confidence 33333333333333444446788999999996 34444 478999888888752
Q ss_pred CCCCCCcEEEECCEEEeccchhhhh
Q 047313 77 SGRVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 77 g~~~~~P~vFI~G~~IGG~del~~l 101 (174)
|....--+.||++-|.||.+.+...
T Consensus 119 gsy~~~~~~~I~DPyYg~~~~Fe~v 143 (159)
T KOG3217|consen 119 GSYDKNGQKIIEDPYYGGDSKFETV 143 (159)
T ss_pred eccCCCCCeecCCCCCCccccHHHH
Confidence 2111222788888888887765443
No 375
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.71 E-value=24 Score=31.58 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=19.7
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
...|+.|+=|+.+-.-+.. ..-.||.||||-|.+
T Consensus 227 l~~C~~C~~s~n~e~~~~s-----k~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 227 LMSCPSCGYSKNSEDLDLS-----KIASCPKCNEGRLTK 260 (457)
T ss_pred eeecCcCCccCchhhhcCC-----ccccCCcccCCCccc
Confidence 3457777655443222211 137899999987754
No 376
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.60 E-value=89 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCC
Q 047313 39 TFEDCRTIRFLLQSFKVTFYERDVSLH 65 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~ 65 (174)
.-+..+++..+|+.+||+|+.+=.+.|
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 568899999999999999998888877
No 377
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=38.41 E-value=1.6e+02 Score=22.66 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=37.5
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC----------CCCCcEEEECC
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG----------RVIPPRLFIKG 89 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~----------~~~~P~vFI~G 89 (174)
+.....|+|.|-... .-.....-..+.+.++..||.+..+=|.. .-..+|.++.+. ....|++||++
T Consensus 107 ~~~~~~iillTDG~~-~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~ 183 (186)
T cd01480 107 QKENKFLLVITDGHS-DGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDD 183 (186)
T ss_pred CCCceEEEEEeCCCc-CCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhcccccccc
Confidence 444445555554421 00112234555666889999988887754 223345555421 23468888887
Q ss_pred E
Q 047313 90 R 90 (174)
Q Consensus 90 ~ 90 (174)
+
T Consensus 184 ~ 184 (186)
T cd01480 184 E 184 (186)
T ss_pred c
Confidence 5
No 378
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.49 E-value=26 Score=30.28 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=7.3
Q ss_pred cceEeCCCCCCC
Q 047313 129 IRFVLCSNCSGS 140 (174)
Q Consensus 129 ~r~v~C~~C~Gs 140 (174)
.||+-|+.|+..
T Consensus 208 ~RyL~CslC~te 219 (305)
T TIGR01562 208 LRYLSCSLCATE 219 (305)
T ss_pred ceEEEcCCCCCc
Confidence 356666666554
No 379
>PRK00420 hypothetical protein; Validated
Probab=37.20 E-value=20 Score=26.47 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=7.4
Q ss_pred cccCcccccC
Q 047313 156 HIRCPECNEN 165 (174)
Q Consensus 156 ~~rC~~Cnen 165 (174)
...||.|.+.
T Consensus 40 ~~~Cp~Cg~~ 49 (112)
T PRK00420 40 EVVCPVHGKV 49 (112)
T ss_pred ceECCCCCCe
Confidence 5778888773
No 380
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=36.75 E-value=1.7e+02 Score=21.37 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHH----HHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFL----LQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD 96 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~i----L~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d 96 (174)
.+..++|.++ ....++.+..+--+ ++..+-.+.-.-+. ++.-.+|..++| ...+|.+ |-+|+|+|-..
T Consensus 26 ~~~~vlf~~g---Dp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~g-v~~~PaLvf~R~g~~lG~i~ 99 (107)
T PF07449_consen 26 PGDAVLFFAG---DPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFG-VRRWPALVFFRDGRYLGAIE 99 (107)
T ss_dssp CSCEEEEESS----TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT--TSSSEEEEEETTEEEEEEE
T ss_pred CCcEEEEECC---CCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhC-CccCCeEEEEECCEEEEEec
Confidence 3456666665 22334554444434 44455455443343 677788999998 8888987 56999999988
Q ss_pred hhhhhh
Q 047313 97 EVVGLH 102 (174)
Q Consensus 97 el~~l~ 102 (174)
.++...
T Consensus 100 gi~dW~ 105 (107)
T PF07449_consen 100 GIRDWA 105 (107)
T ss_dssp SSSTHH
T ss_pred Ceeccc
Confidence 776543
No 381
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=36.61 E-value=1.1e+02 Score=25.04 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=36.6
Q ss_pred CcEEEEEee-cCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcC
Q 047313 24 DSVIFYTTS-LRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 24 ~~VvlYtts-l~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
=.|++|.+. +.. ..-+.=..++.+|+.+ +|.|+.+|...+++..++.....|
T Consensus 27 V~i~~~~s~~l~~--~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 27 VTITVYFSRELPP--ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred EEEEEEECCCcch--hhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 357777765 100 1236678899999887 799999999777777777665555
No 382
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.53 E-value=99 Score=27.06 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=46.3
Q ss_pred hhHhhCCCCCCCcEEEEEeecCCCCCCChhH---HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDC---RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C---~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
+...+.|+-...+|++..-+.- +.-.+- ..-+.+|+++......+-+++..-...|+.++.......|.+|.+|
T Consensus 19 ~~~~~~~~~~k~kiil~~yP~y---~NiGD~aI~~ae~~fl~~~~~~~v~~~~~~~dfs~se~~~~~s~~~e~~i~~~GG 95 (339)
T COG5039 19 AVLGKIPLFAKKKIILLDYPSY---PNIGDHAIAYAEKAFLKQHYGDKVYYEASVKDFSASELIEIKSDIPEDIIFFTGG 95 (339)
T ss_pred hccccccccccceEEEecCCCC---CCchhHHHHHHHHHHHHhhcCceEEEEecccccchhhhhhhhcCCccceEEEeCC
Confidence 3444556666677877776521 112222 3446788887444434444444444566766654344589999999
Q ss_pred EEEecc
Q 047313 90 RYIGGA 95 (174)
Q Consensus 90 ~~IGG~ 95 (174)
--+|+.
T Consensus 96 GNlGDL 101 (339)
T COG5039 96 GNLGDL 101 (339)
T ss_pred Cchhhc
Confidence 766654
No 383
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.45 E-value=16 Score=21.18 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=11.6
Q ss_pred CCCCCCCeeeeec-CCCCCCccccccCccccc
Q 047313 134 CSNCSGSCKVFRD-GDDDDDDELHIRCPECNE 164 (174)
Q Consensus 134 C~~C~Gs~k~~~~-~~~~~~~~~~~rC~~Cne 164 (174)
|+.|.+.-...+- .+.. ....|++|..
T Consensus 3 C~~CG~~l~~~ip~gd~r----~R~vC~~Cg~ 30 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDR----ERLVCPACGF 30 (34)
T ss_dssp -TTT--B-EEE--TT-SS-----EEEETTTTE
T ss_pred cccccChhhhhcCCCCCc----cceECCCCCC
Confidence 7888887333322 2221 2678888863
No 384
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.43 E-value=19 Score=23.88 Aligned_cols=18 Identities=28% Similarity=1.032 Sum_probs=11.7
Q ss_pred cccCcc--cccCccccCCCC
Q 047313 156 HIRCPE--CNENGLVKCPFC 173 (174)
Q Consensus 156 ~~rC~~--CnenGl~~C~~C 173 (174)
...|.. |++.+.|+|+-|
T Consensus 27 ~~~C~~~gC~~~s~I~C~~C 46 (63)
T PF04236_consen 27 AGDCDITGCNNTSFIRCAYC 46 (63)
T ss_pred cCcCCCCCCCCcCEEEcccc
Confidence 455665 777777777665
No 385
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.50 E-value=1e+02 Score=28.43 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=35.8
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.+++|+.+ .|++|..++++|+. -.|.++++|...+.+. .+.++ ....|.+-|
T Consensus 369 ~l~~~~~~------~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~----~~~~~-v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDG------SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPES----ETLPK-ITKLPTVAL 425 (555)
T ss_pred EEEEEECC------CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhh----HhhcC-CCcCCEEEE
Confidence 35556654 67899999999987 3567888887665443 33444 456788876
No 386
>PRK12495 hypothetical protein; Provisional
Probab=35.48 E-value=46 Score=27.56 Aligned_cols=28 Identities=21% Similarity=0.602 Sum_probs=16.6
Q ss_pred hcCchhHHhhcCCCCCCCCCCCCCCCcce
Q 047313 103 EQGKLKKLLEGIPRNLSDCSCNGCGNIRF 131 (174)
Q Consensus 103 e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~ 131 (174)
...++.++|.+ +.......|..||..-|
T Consensus 26 ~~~~ma~lL~~-gatmsa~hC~~CG~PIp 53 (226)
T PRK12495 26 ATERMSELLLQ-GATMTNAHCDECGDPIF 53 (226)
T ss_pred HHHHHHHHHHh-hcccchhhcccccCccc
Confidence 33445555543 23345678999998755
No 387
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=35.45 E-value=1.4e+02 Score=22.92 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=37.8
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhC--CCcEEEEECCCCHHHHHHHHHhcCCCCCCc--EEEE-CCEEEeccch
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF--KVTFYERDVSLHMEFRDELWSSLSGRVIPP--RLFI-KGRYIGGADE 97 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P--~vFI-~G~~IGG~de 97 (174)
...||+|-. .|+.|.....+|..+ +-.|...++-..+ -..+.+..|-....+ .+|+ +|+..-|.|.
T Consensus 8 p~~vvlyDG-------~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~--g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 8 PDLVVLYDG-------VCPLCDGWVRFLIRRDQGGRIRFAALQSEP--GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CCEEEEECC-------cchhHHHHHHHHHHhccCCcEEEEeccCch--hhhHHhhcCCChhhhheeeEecCCceEeccHH
Confidence 356777776 599999888888775 4457777764322 234445444322222 2344 3444444444
Q ss_pred h
Q 047313 98 V 98 (174)
Q Consensus 98 l 98 (174)
+
T Consensus 79 ~ 79 (137)
T COG3011 79 A 79 (137)
T ss_pred H
Confidence 3
No 388
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=35.27 E-value=2.6e+02 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=34.3
Q ss_pred cchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc-EEEEECC
Q 047313 8 SPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT-FYERDVS 63 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~-~~e~Dv~ 63 (174)
...++.|-+... +...+|++..|.-. ..=.+....+.+|+++|+. +..+++.
T Consensus 14 ~~i~~~~~~lag-~~~~rI~~iptAS~---~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 14 REILREFVSRAG-GEDAIIVIITSASE---EPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred HHHHHHHHHHhC-CCCceEEEEeCCCC---ChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 336667766662 23357777766421 1224578899999999995 7888884
No 389
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.13 E-value=71 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.3
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHH----hC-CCcEEEEECCCCHH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ----SF-KVTFYERDVSLHME 67 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~----~~-~v~~~e~Dv~~~~~ 67 (174)
+|++|+.. .||+|-.+...|+ .+ ++.++.+-+...+.
T Consensus 1 ~i~~~~D~------~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDF------ICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBT------TBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeC------CCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 47778876 7999976665554 45 78888777654433
No 390
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=34.87 E-value=14 Score=20.77 Aligned_cols=16 Identities=31% Similarity=0.980 Sum_probs=9.6
Q ss_pred cCcccccCccccCCCC
Q 047313 158 RCPECNENGLVKCPFC 173 (174)
Q Consensus 158 rC~~CnenGl~~C~~C 173 (174)
.|..|+..+.-+||.|
T Consensus 4 ~C~vC~~~~kY~Cp~C 19 (30)
T PF04438_consen 4 LCSVCGNPAKYRCPRC 19 (30)
T ss_dssp EETSSSSEESEE-TTT
T ss_pred CCccCcCCCEEECCCc
Confidence 4566666666666666
No 391
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.82 E-value=28 Score=30.08 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=21.7
Q ss_pred eCCCCCCCee-eeecCCCCCCccccccCccccc---CccccCCCCC
Q 047313 133 LCSNCSGSCK-VFRDGDDDDDDELHIRCPECNE---NGLVKCPFCS 174 (174)
Q Consensus 133 ~C~~C~Gs~k-~~~~~~~~~~~~~~~rC~~Cne---nGl~~C~~C~ 174 (174)
.|+.|++.-. +++..+....+.+.+.|+-|.- --.+.||.|.
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg 231 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCE 231 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCC
Confidence 3555555432 2333322122346788888864 3456677773
No 392
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=34.76 E-value=1.8e+02 Score=21.28 Aligned_cols=44 Identities=9% Similarity=-0.087 Sum_probs=23.3
Q ss_pred CChhHHH-------HHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313 39 TFEDCRT-------IRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL 85 (174)
Q Consensus 39 ~c~~C~~-------vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v 85 (174)
.|+.|.. ..+-|...++.+.-+.+......++ +.+..+ .++|.+
T Consensus 42 ~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~-~~~~~~--~~~~~l 92 (154)
T PRK09437 42 MTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSR-FAEKEL--LNFTLL 92 (154)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH-HHHHhC--CCCeEE
Confidence 3777743 3334455677777776654333333 333333 456654
No 393
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=34.57 E-value=2.3e+02 Score=22.32 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=55.1
Q ss_pred CcchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC---CHHHHHHHHHhcCCCCCCc
Q 047313 7 ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL---HMEFRDELWSSLSGRVIPP 83 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~---~~~~~~el~~~~g~~~~~P 83 (174)
+.+.+..|-+... ....+|++-.+... . ...+....++.|+++|+....+.+.. +++..+.+.+ .-
T Consensus 14 ~~~~~~~~~~~~~-~~~~~i~~iptA~~-~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~-------ad 82 (210)
T cd03129 14 ARPILQDFLARAG-GAGARVLFIPTASG-D--RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE-------AD 82 (210)
T ss_pred hHHHHHHHHHHcC-CCCCeEEEEeCCCC-C--hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh-------CC
Confidence 3445556655543 34556666655532 1 34678889999999999988777653 3554444433 33
Q ss_pred EEEECCEEEeccch-hhhhhhcCchhHHhhcCC
Q 047313 84 RLFIKGRYIGGADE-VVGLHEQGKLKKLLEGIP 115 (174)
Q Consensus 84 ~vFI~G~~IGG~de-l~~l~e~G~L~~~L~~~~ 115 (174)
.||+.| |.... +..|.+.+-++.+++.+.
T Consensus 83 ~I~~~G---G~~~~~~~~l~~t~~~~~i~~~~~ 112 (210)
T cd03129 83 GIFVGG---GNQLRLLSVLRETPLLDAILKRVA 112 (210)
T ss_pred EEEEcC---CcHHHHHHHHHhCChHHHHHHHHH
Confidence 455555 33333 344455556666666544
No 394
>PF14353 CpXC: CpXC protein
Probab=34.52 E-value=29 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHhCCCc-EEEEECCCCHHHHHHHHHhc---------CC--CCCCcEEEECCE
Q 047313 39 TFEDCRTIRFLLQSFKVT-FYERDVSLHMEFRDELWSSL---------SG--RVIPPRLFIKGR 90 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~-~~e~Dv~~~~~~~~el~~~~---------g~--~~~~P~vFI~G~ 90 (174)
+||.|.. ...+. |+.||.+.++++++.+..-. |. ....|.+++|..
T Consensus 3 tCP~C~~------~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 3 TCPHCGH------EFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred CCCCCCC------eeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 5777765 22333 78899999999999987432 21 457799998774
No 395
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=34.36 E-value=20 Score=19.08 Aligned_cols=8 Identities=63% Similarity=1.613 Sum_probs=4.7
Q ss_pred cccCCCCC
Q 047313 167 LVKCPFCS 174 (174)
Q Consensus 167 l~~C~~C~ 174 (174)
|+.||.|+
T Consensus 2 l~~C~~Cg 9 (25)
T PF13913_consen 2 LVPCPICG 9 (25)
T ss_pred CCcCCCCC
Confidence 45666663
No 396
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=34.17 E-value=52 Score=19.27 Aligned_cols=31 Identities=26% Similarity=0.642 Sum_probs=17.5
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCccc
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPEC 162 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~C 162 (174)
-|-|+.|+....++.......+ .-.-||..|
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G-~qryrC~~C 35 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSG-HQRYRCKDC 35 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCC-CEeEecCcC
Confidence 3679999988655544333222 224566665
No 397
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.05 E-value=1.4e+02 Score=26.33 Aligned_cols=86 Identities=16% Similarity=0.082 Sum_probs=51.1
Q ss_pred HhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh-CCCcEEEEECCCC-HHHHHH-HHHhcCCCCCCcEEEE
Q 047313 11 LKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-FKVTFYERDVSLH-MEFRDE-LWSSLSGRVIPPRLFI 87 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-~~v~~~e~Dv~~~-~~~~~e-l~~~~g~~~~~P~vFI 87 (174)
+..|-++.++..-..+.+ +... .=.+=+++..+++. .++++..+|++.. .+..-+ ++.+ ...+|.++|
T Consensus 84 ~~~fv~~~~~~~~~~~~v-avG~-----~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~i---k~~~P~~~v 154 (346)
T PRK05096 84 WAAFVNNSSADVLKHVMV-STGT-----SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKA---REAWPDKTI 154 (346)
T ss_pred HHHHHHhccccccceEEE-EecC-----CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHH---HHhCCCCcE
Confidence 345555555443344544 4332 12445778888874 7999999999753 444333 4444 346777765
Q ss_pred CCEEEeccchhhhhhhcC
Q 047313 88 KGRYIGGADEVVGLHEQG 105 (174)
Q Consensus 88 ~G~~IGG~del~~l~e~G 105 (174)
=.--|+..+....|.+.|
T Consensus 155 IaGNV~T~e~a~~Li~aG 172 (346)
T PRK05096 155 CAGNVVTGEMVEELILSG 172 (346)
T ss_pred EEecccCHHHHHHHHHcC
Confidence 444566677777776655
No 398
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=33.85 E-value=42 Score=24.53 Aligned_cols=21 Identities=33% Similarity=1.020 Sum_probs=13.0
Q ss_pred CCCCCCCCCc------ceEeCCCCCCC
Q 047313 120 DCSCNGCGNI------RFVLCSNCSGS 140 (174)
Q Consensus 120 ~~~C~~Cgg~------r~v~C~~C~Gs 140 (174)
...|..||-. .+..|+.|++.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCCC
Confidence 4568888743 22557777754
No 399
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.66 E-value=30 Score=29.21 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc
Q 047313 127 GNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL 167 (174)
Q Consensus 127 gg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl 167 (174)
++...|.|..|+-.=.+--.... -.++|+.|||---
T Consensus 61 ~~~p~v~CrVCq~~I~i~gk~~Q-----hVVkC~~CnEATP 96 (256)
T PF09788_consen 61 GGAPVVTCRVCQSLIDIEGKMHQ-----HVVKCSVCNEATP 96 (256)
T ss_pred CCCceEEeecCCceecccCccce-----eeEECCCCCcccc
Confidence 57789999999865332211122 3899999999643
No 400
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=33.62 E-value=8.9 Score=26.12 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCCcEEEECCEEEeccchhhhhhhcCchhHHhhcCCCC
Q 047313 80 VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRN 117 (174)
Q Consensus 80 ~~~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~~~~~ 117 (174)
...|.|||=+.+-||.--+.++.+...+.++|+.+-..
T Consensus 33 ~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A~~~ 70 (84)
T PF09369_consen 33 QGPPRIFLYDTVPGGAGYAERLFERERFEELLRRALEL 70 (84)
T ss_pred CCccEEEEEECCCCchhhHhhhcChhHHHHHHHHHHHH
Confidence 57799999998999999999998888899998764443
No 401
>PLN02790 transketolase
Probab=33.54 E-value=1.3e+02 Score=28.64 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=42.5
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHH----HHHhcCCCCCCcEEEECCEEEeccch
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDE----LWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~e----l~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
.+|+|.++.. .-..+.+|.+.|++.||....+|+..-.-+-++ ..+..+ ...-+.|.|....++|...
T Consensus 541 ~dv~iia~G~-----~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~-~~~~~vvtiE~~~~~G~~~ 612 (654)
T PLN02790 541 PDLILIGTGS-----ELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLP-SSVTARVSVEAGSTFGWEK 612 (654)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhc-cccceEEEecCccchhHHH
Confidence 4677777652 457889999999999999999998432222221 223333 3333567776666666433
No 402
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.44 E-value=88 Score=23.67 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=34.6
Q ss_pred CcchHhhhHhhCCCC-CCCcEEEEEeecC---CCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHH
Q 047313 7 ESPFLKGYEEKCPPG-GEDSVIFYTTSLR---GIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHME 67 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~VvlYttsl~---~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~ 67 (174)
.....++|++.-... +..+|.+|.+.-. .-+.=||+|.+|.-.+.+ .++.|..++|..-+.
T Consensus 8 ~~~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 8 LLPGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred ccchHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence 334455676665433 3334555554422 122349999988766543 356688888855433
No 403
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=47 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 43 CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 43 C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
=.+++-+|+-+|+...+-+++.|+++..++.++-
T Consensus 72 L~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~ 105 (168)
T KOG3192|consen 72 LARARYLLKLKGQEQTSNELSTDPEFLMEVLEYH 105 (168)
T ss_pred HHHHHHHHHHhCCCCchhhhccCHHHHHHHHHHH
Confidence 4567788899999999999999999998887764
No 404
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=33.30 E-value=22 Score=25.71 Aligned_cols=8 Identities=25% Similarity=0.933 Sum_probs=5.3
Q ss_pred eEeCCCCC
Q 047313 131 FVLCSNCS 138 (174)
Q Consensus 131 ~v~C~~C~ 138 (174)
++.|+.|+
T Consensus 21 ~f~CP~Cg 28 (99)
T PRK14892 21 IFECPRCG 28 (99)
T ss_pred EeECCCCC
Confidence 55677777
No 405
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=33.11 E-value=30 Score=22.10 Aligned_cols=32 Identities=25% Similarity=0.626 Sum_probs=19.7
Q ss_pred ceEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 130 RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 130 r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
--+.|+.|+..--......+. ...-+|+.|+.
T Consensus 21 ~aLIC~~C~~hNGla~~~~~~---~i~y~C~~Cg~ 52 (54)
T PF10058_consen 21 YALICSKCFSHNGLAPKEEFE---EIQYRCPYCGA 52 (54)
T ss_pred eeEECcccchhhcccccccCC---ceEEEcCCCCC
Confidence 457799988764443233332 24778999875
No 406
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.72 E-value=80 Score=28.40 Aligned_cols=41 Identities=20% Similarity=0.524 Sum_probs=31.0
Q ss_pred hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEE
Q 047313 10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERD 61 (174)
Q Consensus 10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~D 61 (174)
.|..|+.+ ..+.|+||+. +|-.|+....+|+.+++++...-
T Consensus 245 ~Lr~~~~~----~~~simIFvn-------ttr~cQ~l~~~l~~le~r~~~lH 285 (442)
T KOG0340|consen 245 LLRDFENK----ENGSIMIFVN-------TTRECQLLSMTLKNLEVRVVSLH 285 (442)
T ss_pred HHhhhhhc----cCceEEEEee-------hhHHHHHHHHHHhhhceeeeehh
Confidence 45556665 4567999987 58999999999999877665443
No 407
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=32.62 E-value=17 Score=23.21 Aligned_cols=8 Identities=50% Similarity=1.618 Sum_probs=4.0
Q ss_pred cccCcccc
Q 047313 156 HIRCPECN 163 (174)
Q Consensus 156 ~~rC~~Cn 163 (174)
..+||-|.
T Consensus 24 eIKCpRC~ 31 (51)
T PF10122_consen 24 EIKCPRCK 31 (51)
T ss_pred EEECCCCC
Confidence 45555553
No 408
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=32.39 E-value=37 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=14.7
Q ss_pred CCCCcEEEECCEEEeccc
Q 047313 79 RVIPPRLFIKGRYIGGAD 96 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~d 96 (174)
..-.=++||||.+||.+.
T Consensus 61 ~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 61 NAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TTEEEEEEETTEEEEEEE
T ss_pred CceEEEEEECCEEeeeec
Confidence 445578999999999876
No 409
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=32.38 E-value=75 Score=25.72 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCCC-cEEEECCEEEeccchhhhhhh
Q 047313 67 EFRDELWSSLSGRVIP-PRLFIKGRYIGGADEVVGLHE 103 (174)
Q Consensus 67 ~~~~el~~~~g~~~~~-P~vFI~G~~IGG~del~~l~e 103 (174)
..+.+|.+..+ ..++ |..||+++-.-+..++.+|..
T Consensus 100 ~~rh~l~~~~~-~g~vP~IkFV~DK~~~~l~e~d~ll~ 136 (207)
T KOG4700|consen 100 QIRHRLEESIG-IGTVPEIKFVGDKALLMLQEMDKLLR 136 (207)
T ss_pred HHHHHHHHHhc-cccCCceEEecchHHHHHHHHHHHHH
Confidence 34555555555 5455 455999986655555544433
No 410
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=31.84 E-value=1.7e+02 Score=20.05 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=37.1
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL 76 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~ 76 (174)
..++++||+.+ -..+..+...|+..+..+..+.=..++..+..+.+..
T Consensus 27 ~~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 27 KGGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred CCCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 45789999886 4789999999998888888777666666667666554
No 411
>PTZ00056 glutathione peroxidase; Provisional
Probab=31.78 E-value=1.5e+02 Score=23.42 Aligned_cols=24 Identities=4% Similarity=-0.111 Sum_probs=13.4
Q ss_pred CChhHHHHH----HHHH---hCCCcEEEEEC
Q 047313 39 TFEDCRTIR----FLLQ---SFKVTFYERDV 62 (174)
Q Consensus 39 ~c~~C~~vr----~iL~---~~~v~~~e~Dv 62 (174)
.|+.|.+-. ++.+ ..|+.+.-+.+
T Consensus 50 wC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 50 KCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 599997532 2222 34666666654
No 412
>smart00594 UAS UAS domain.
Probab=31.69 E-value=1.1e+02 Score=21.94 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=32.5
Q ss_pred cEEEEEeecCCCCCCChhHHHHH-HHHHhCCC--------cEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIR-FLLQSFKV--------TFYERDVSLHMEFRDELWSSLSGRVIPPRLFI 87 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr-~iL~~~~v--------~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI 87 (174)
.+.||..+ ..|++|.... .+|.+..| -+-.+|+...+. .++...++ ..++|.+.|
T Consensus 29 ~~lv~~~~-----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~-~~~~P~~~~ 92 (122)
T smart00594 29 LLWLYLHS-----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYK-LDSFPYVAI 92 (122)
T ss_pred CEEEEEeC-----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcC-cCCCCEEEE
Confidence 45555554 3689997743 34443322 233467765544 35666676 778998854
No 413
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.59 E-value=44 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.547 Sum_probs=20.9
Q ss_pred CcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313 128 NIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK 169 (174)
Q Consensus 128 g~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~ 169 (174)
|.|...|..|+-..-. .... ....||.|+-+.-.|
T Consensus 109 g~G~l~C~~Cg~~~~~--~~~~-----~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 109 GPGTLVCENCGHEVEL--THPE-----RLPPCPKCGHTEFTR 143 (146)
T ss_pred cCceEecccCCCEEEe--cCCC-----cCCCCCCCCCCeeee
Confidence 6677777777754333 2222 257788887665444
No 414
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=31.36 E-value=1.5e+02 Score=21.53 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=30.4
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--------CHHHHHHHHHh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--------HMEFRDELWSS 75 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--------~~~~~~el~~~ 75 (174)
...++||.+- .+...|.+-|+..+|+|..-.+.. +++..+.++..
T Consensus 15 R~LvL~T~~~-------~~~~~~~~rL~~~~I~y~iq~v~~~~iNlFFG~~~Ci~~ir~i 67 (101)
T PF09633_consen 15 RQLVLHTLPK-------RYEEFAIARLERQGIDYFIQPVGNGKINLFFGRKECIEVIRSI 67 (101)
T ss_dssp -SEEEEEEEG-------GGHHHHHHHHHHTT--EEEEE-TSSEEEEEEE-HHHHHHHHHH
T ss_pred hhHhhhhCCH-------hhHHHHHHHHHHCCCCEEEEEcCCCCEEEEECCHHHHHHHHHH
Confidence 4689999984 688999999999999998777643 35555555444
No 415
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=31.16 E-value=2.2e+02 Score=22.89 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=44.7
Q ss_pred hCCCCCCCcEEEEEeecCCCCCCCh--hHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC
Q 047313 17 KCPPGGEDSVIFYTTSLRGIRKTFE--DCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG 78 (174)
Q Consensus 17 ~~~~~~~~~VvlYttsl~~ir~~c~--~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~ 78 (174)
..|.-+...|++...|++ +|. +-..+.+.|...+|++..+-++..-..-+++-+.+||
T Consensus 95 ~~p~~~srEIlvi~gSl~----t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~G 154 (193)
T PF04056_consen 95 HMPSHGSREILVIFGSLT----TCDPGDIHETIESLKKENIRVSVISLAAEVYICKKICKETGG 154 (193)
T ss_pred hCccccceEEEEEEeecc----cCCchhHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhCC
Confidence 356667778888777775 553 4568888999999999999998777777888888873
No 416
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=30.78 E-value=1.6e+02 Score=19.31 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=26.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHh----C---CCcEEEEECCCC-HHHHHHHHHh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F---KVTFYERDVSLH-MEFRDELWSS 75 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~-~~~~~el~~~ 75 (174)
.-+++|..+ .|+.|.+....|.. + ++.+..++++.+ ++...++.+.
T Consensus 21 ~~ll~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 21 VVLVNFWAS------WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred EEEEEeecc------cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 345555554 59999866555543 3 566778888764 4443333333
No 417
>PRK05978 hypothetical protein; Provisional
Probab=30.73 E-value=27 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=7.7
Q ss_pred ccccCcccccC
Q 047313 155 LHIRCPECNEN 165 (174)
Q Consensus 155 ~~~rC~~Cnen 165 (174)
...+|+.|++.
T Consensus 51 v~~~C~~CG~~ 61 (148)
T PRK05978 51 PVDHCAACGED 61 (148)
T ss_pred cCCCccccCCc
Confidence 36788888763
No 418
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.60 E-value=1.5e+02 Score=26.10 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHhCCCcEEEEECCCC----HHHHHHHHHhcCCCCCCcEEEECCE
Q 047313 38 KTFEDCRTIRFLLQSFKVTFYERDVSLH----MEFRDELWSSLSGRVIPPRLFIKGR 90 (174)
Q Consensus 38 ~~c~~C~~vr~iL~~~~v~~~e~Dv~~~----~~~~~el~~~~g~~~~~P~vFI~G~ 90 (174)
.+|..=..+..+|+.+.+.....||.|. -++.+..+++ ...+|.|||-.+
T Consensus 28 ~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i---~~~v~iifIssh 81 (361)
T COG3947 28 RSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDI---ESAVPIIFISSH 81 (361)
T ss_pred hccCCHHHHHHHHHhcCCCEEEEEeecCCccHHHHHHHHHHh---hccCcEEEEecc
Confidence 4688888999999999999999999765 4555666665 468999999653
No 419
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=30.51 E-value=37 Score=23.94 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=29.6
Q ss_pred hhhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc
Q 047313 98 VVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL 167 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl 167 (174)
+.++.+.-.|.++++..-... .=|..-..+|+.|....-++.-+..+ ..-+|-.|+..|-
T Consensus 6 ~~~i~~~~~i~~v~~~~~~l~------~~G~~~~~~CPfH~d~~pS~~i~~~k----~~~~Cf~Cg~~Gd 65 (97)
T PF01807_consen 6 IEEIKSRIDIVDVIERYIKLK------RRGREYRCLCPFHDDKTPSFSINPDK----NRFKCFGCGKGGD 65 (97)
T ss_dssp HHHHHHCS-HHHHHCCCS--E------EETTEEEE--SSS--SS--EEEETTT----TEEEETTT--EE-
T ss_pred HHHHHHhCCHHHHHHHhcccc------ccCCeEEEECcCCCCCCCceEEECCC----CeEEECCCCCCCc
Confidence 445556667777777652111 12445567899988876666544332 2688999998873
No 420
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=71 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.1
Q ss_pred CCCCcEEEECCEEEeccchhhhh
Q 047313 79 RVIPPRLFIKGRYIGGADEVVGL 101 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~del~~l 101 (174)
....|.+||+|+.+.|+-.+.+|
T Consensus 213 v~gTPt~~v~~~~~~g~~~~~~l 235 (244)
T COG1651 213 VNGTPTFIVNGKLVPGLPDLDEL 235 (244)
T ss_pred CCcCCeEEECCeeecCCCCHHHH
Confidence 67889999999988887664433
No 421
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=30.39 E-value=53 Score=21.89 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.4
Q ss_pred CCCCcEEEECCEEEecc
Q 047313 79 RVIPPRLFIKGRYIGGA 95 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~ 95 (174)
-..-|.+.|++++++..
T Consensus 44 C~~gP~v~V~~~~~~~~ 60 (72)
T cd03082 44 CERAPAALVGQRPVDGA 60 (72)
T ss_pred cCCCCeEEECCEEeCCc
Confidence 45789999999998776
No 422
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=30.20 E-value=42 Score=22.07 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=13.8
Q ss_pred cceEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 129 ~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
.-.|.|-.|+....+.. .+ .-++|+.|..
T Consensus 28 ~v~IlCNDC~~~s~v~f--H~-----lg~KC~~C~S 56 (61)
T PF14599_consen 28 KVWILCNDCNAKSEVPF--HF-----LGHKCSHCGS 56 (61)
T ss_dssp EEEEEESSS--EEEEE----T-----T----TTTS-
T ss_pred EEEEECCCCCCccceee--eH-----hhhcCCCCCC
Confidence 35788999998654433 33 3589999864
No 423
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.99 E-value=2.4e+02 Score=24.19 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=44.4
Q ss_pred hhHhhCCC-CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-
Q 047313 13 GYEEKCPP-GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL- 85 (174)
Q Consensus 13 ~~~~~~~~-~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v- 85 (174)
.|...-+. ++.--||=||.+| |..|.++--++..+ +.-|-.+||..-.. -..-.| ...+|+.
T Consensus 11 df~~~ls~ag~k~v~Vdfta~w------CGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~----taa~~g-V~amPTFi 79 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDFTASW------CGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG----TAATNG-VNAMPTFI 79 (288)
T ss_pred HHHHhhhccCceEEEEEEEecc------cchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc----hhhhcC-cccCceEE
Confidence 34444443 4445666788887 99999999888774 34478888843222 122224 6778875
Q ss_pred -EECCEEE
Q 047313 86 -FIKGRYI 92 (174)
Q Consensus 86 -FI~G~~I 92 (174)
|.+|.-|
T Consensus 80 ff~ng~ki 87 (288)
T KOG0908|consen 80 FFRNGVKI 87 (288)
T ss_pred EEecCeEe
Confidence 7899765
No 424
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=29.43 E-value=1.2e+02 Score=22.77 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=27.3
Q ss_pred cchHhhhHhhCC--CCCC-CcEEEEEeecCCCCCCChhHHHHHHHHHh
Q 047313 8 SPFLKGYEEKCP--PGGE-DSVIFYTTSLRGIRKTFEDCRTIRFLLQS 52 (174)
Q Consensus 8 ~~~~~~~~~~~~--~~~~-~~VvlYttsl~~ir~~c~~C~~vr~iL~~ 52 (174)
...|+.++++-. +... ++|.|||.- +.|+-|..|..-+..
T Consensus 78 ~KiL~~ia~~l~~~~~~~~G~i~l~te~-----~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 78 YKILEDIAKKLGDNPDPSGGTIDLFTEL-----PPCESCSNVIEQFKK 120 (133)
T ss_pred HHHHHHHHHHhccccccCCceEEEEecC-----CcChhHHHHHHHHHH
Confidence 456667766652 3433 899999975 689999876554443
No 425
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=29.32 E-value=26 Score=31.42 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=38.0
Q ss_pred CCEEEeccchhhhhhhcCchhHHhh--cCCCCCCCCCCCCCCC-----------cceEeCCCCCCCe
Q 047313 88 KGRYIGGADEVVGLHEQGKLKKLLE--GIPRNLSDCSCNGCGN-----------IRFVLCSNCSGSC 141 (174)
Q Consensus 88 ~G~~IGG~del~~l~e~G~L~~~L~--~~~~~~~~~~C~~Cgg-----------~r~v~C~~C~Gs~ 141 (174)
+|..+-|.+++.+..+.|..+.||- .+........|..|+. ..+..|+.|++..
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 356 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEM 356 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCccc
Confidence 4788999999999999999999863 3333333345777763 2234677777764
No 426
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.27 E-value=32 Score=27.78 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=29.3
Q ss_pred hcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 112 EGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 112 ~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
...++.+....|.+||+.+--.| +|.-++ .+++..-+--..-||..||..
T Consensus 9 tp~~~pq~~k~C~~Cg~kr~f~c---Sg~fRv-NAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 9 TPVGAPQPAKRCNSCGVKRAFTC---SGKFRV-NAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred ccccCChhhhhCcccCCcceeee---cCcEEE-cCCCcEEEEEEEEEeeccCCc
Confidence 33455566778999999997765 455443 233221110124589999854
No 427
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=29.10 E-value=2e+02 Score=26.85 Aligned_cols=14 Identities=7% Similarity=-0.244 Sum_probs=10.9
Q ss_pred CChhHHHHHHHHHh
Q 047313 39 TFEDCRTIRFLLQS 52 (174)
Q Consensus 39 ~c~~C~~vr~iL~~ 52 (174)
-|+.|....-.|+.
T Consensus 67 WCppCk~emP~L~e 80 (521)
T PRK14018 67 WCPLCLSELGETEK 80 (521)
T ss_pred CCHHHHHHHHHHHH
Confidence 49999998777654
No 428
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.93 E-value=2.3e+02 Score=23.30 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEECCC
Q 047313 41 EDCRTIRFLLQSFKVTFYERDVSL 64 (174)
Q Consensus 41 ~~C~~vr~iL~~~~v~~~e~Dv~~ 64 (174)
.+-..+++.|+.+|+.+..+++..
T Consensus 48 ~y~~~~~~af~~lG~~v~~l~~~~ 71 (233)
T PRK05282 48 DYTAKVAEALAPLGIEVTGIHRVA 71 (233)
T ss_pred HHHHHHHHHHHHCCCEEEEeccch
Confidence 467889999999999999888764
No 429
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=28.83 E-value=33 Score=25.67 Aligned_cols=29 Identities=34% Similarity=0.849 Sum_probs=17.3
Q ss_pred cceEeCC--CCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 129 IRFVLCS--NCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 129 ~r~v~C~--~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
.-|..|+ .|+. |+.....+ ..+|+.|+.+
T Consensus 16 ~~Y~aC~~~~C~k--Kv~~~~~~------~y~C~~C~~~ 46 (146)
T PF08646_consen 16 WYYPACPNEKCNK--KVTENGDG------SYRCEKCNKT 46 (146)
T ss_dssp TEEEE-TSTTTS---B-EEETTT------EEEETTTTEE
T ss_pred cEECCCCCccCCC--EeecCCCc------EEECCCCCCc
Confidence 4577888 8884 44433222 5789999876
No 430
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.79 E-value=2.1e+02 Score=26.82 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=35.3
Q ss_pred hCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC
Q 047313 17 KCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65 (174)
Q Consensus 17 ~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~ 65 (174)
.++|....+|.|.+-|.+ .-+..+.+...|+.+||+|+..=++.|
T Consensus 404 ~~~~~~~~~v~i~~gs~s----d~~~~~~~~~~l~~~g~~~~~~v~sah 448 (577)
T PLN02948 404 DALPKGTPLVGIIMGSDS----DLPTMKDAAEILDSFGVPYEVTIVSAH 448 (577)
T ss_pred CCCCCCCCeEEEEECchh----hHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 355666777877776643 568899999999999999997777776
No 431
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=28.60 E-value=63 Score=29.91 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.4
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEE
Q 047313 27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERD 61 (174)
Q Consensus 27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~D 61 (174)
++|+| .+|++++.|++.++|+|..+-
T Consensus 621 ~~YST---------~~~~K~~Ei~~KY~V~Yv~~G 646 (684)
T COG5427 621 VVYST---------TDAAKRAEILEKYDVTYVWVG 646 (684)
T ss_pred eeeec---------CcHHHHHHHHHhcCceEEEEc
Confidence 47887 489999999999999998774
No 432
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=28.50 E-value=1.4e+02 Score=22.91 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=25.1
Q ss_pred CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc
Q 047313 19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT 56 (174)
Q Consensus 19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~ 56 (174)
++..+.+||+|-.+ +|.....+-.+|...|.+
T Consensus 112 ~~~~d~~IVvYC~~------G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 112 GGDKDRPLVFYCLA------DCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCCCCEEEEEECC------CCHHHHHHHHHHHhcCCc
Confidence 33567789999986 677888888888888865
No 433
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=28.04 E-value=2.7e+02 Score=21.15 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE---CCEEE
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI---KGRYI 92 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI---~G~~I 92 (174)
.+.|+.-+.. ..=..++++++.+++.|..+.+..+ ...++.+.++ ...+|.+|+ +|+.+
T Consensus 65 ~~~vV~Vs~D------~~~~~~~~f~~~~~~~~~~~p~~~~--~~~~l~~~y~-v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMD------QSEQQQESFLKDMPKKWLFLPFEDE--FRRELEAQFS-VEELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECC------CCHHHHHHHHHHCCCCceeecccch--HHHHHHHHcC-CCCCCEEEEECCCCcEE
Confidence 4666666532 2336688999999988766554332 2346667776 788999975 56655
No 434
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=28.03 E-value=71 Score=23.81 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=3.8
Q ss_pred EeCCCCCC
Q 047313 132 VLCSNCSG 139 (174)
Q Consensus 132 v~C~~C~G 139 (174)
+.|+.|+.
T Consensus 61 ~~Cp~C~~ 68 (140)
T COG0551 61 VKCPKCGK 68 (140)
T ss_pred eeCCCCCC
Confidence 34555554
No 435
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.53 E-value=41 Score=33.81 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCCcEEEE
Q 047313 44 RTIRFLLQSFKVTFYER 60 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~ 60 (174)
..+|.+|+.++|++...
T Consensus 505 ~~~k~~LE~L~v~H~~~ 521 (1121)
T PRK04023 505 EGVKRILEKLGVPHRVR 521 (1121)
T ss_pred HHHHHHHHHhCCceEec
Confidence 37888888888875444
No 436
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=27.47 E-value=29 Score=19.89 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=5.4
Q ss_pred ccccCccccCCCC
Q 047313 161 ECNENGLVKCPFC 173 (174)
Q Consensus 161 ~CnenGl~~C~~C 173 (174)
.|....+.+|+.|
T Consensus 3 ~C~~~~~~~C~~C 15 (37)
T PF01753_consen 3 VCGKPALKRCSRC 15 (37)
T ss_dssp TTSSCSSEEETTT
T ss_pred CCCCCcCCcCCCC
Confidence 3333444444443
No 437
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=27.12 E-value=32 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=24.6
Q ss_pred cceEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE 164 (174)
Q Consensus 129 ~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne 164 (174)
++-++|..|+|.++.+..+.... .++-|..|..
T Consensus 3 ~n~i~C~~C~~~H~r~~t~r~~~---~AR~C~~C~~ 35 (94)
T PF14901_consen 3 SNTIRCDKCGGKHKRIETDRPPS---AARYCQDCKI 35 (94)
T ss_pred cceeechhhCCeeeeEEecCchh---hhHhHHHhhh
Confidence 45689999999988887765422 3778888864
No 438
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=27.03 E-value=58 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCCcEEEECCEEEeccchhhhhhhcCch
Q 047313 79 RVIPPRLFIKGRYIGGADEVVGLHEQGKL 107 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~del~~l~e~G~L 107 (174)
..++|-||..|..++|...+.....+|..
T Consensus 717 ~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~ 745 (1006)
T PRK12775 717 STNLPGVFAGGDIVTGGATVILAMGAGRR 745 (1006)
T ss_pred CCCCCCEEEecCcCCCccHHHHHHHHHHH
Confidence 35689999999988888777766666655
No 439
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=26.78 E-value=43 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.759 Sum_probs=12.0
Q ss_pred eCCCCCCCeeeeecCCCCCCccccccCcccc
Q 047313 133 LCSNCSGSCKVFRDGDDDDDDELHIRCPECN 163 (174)
Q Consensus 133 ~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cn 163 (174)
-|+.|+.. .+..+.. ...|..|.
T Consensus 22 fCP~Cg~~--~m~~~~~------r~~C~~Cg 44 (50)
T PRK00432 22 FCPRCGSG--FMAEHLD------RWHCGKCG 44 (50)
T ss_pred cCcCCCcc--hheccCC------cEECCCcC
Confidence 46666543 3333332 46777774
No 440
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=26.73 E-value=42 Score=20.27 Aligned_cols=6 Identities=50% Similarity=1.309 Sum_probs=2.9
Q ss_pred ccCccc
Q 047313 157 IRCPEC 162 (174)
Q Consensus 157 ~rC~~C 162 (174)
..|+.|
T Consensus 35 ~~Cv~C 40 (41)
T PF06677_consen 35 IYCVSC 40 (41)
T ss_pred EECCCC
Confidence 445544
No 441
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.73 E-value=2.4e+02 Score=20.01 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=22.7
Q ss_pred CChhHHHH-------HHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313 39 TFEDCRTI-------RFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL 85 (174)
Q Consensus 39 ~c~~C~~v-------r~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v 85 (174)
.|+.|... .+.|+..++.+.-+.+......+ ++.+..+ ..+|.+
T Consensus 35 ~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~-~~~~~~~--~~~~~l 85 (140)
T cd03017 35 DTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHA-KFAEKYG--LPFPLL 85 (140)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHhC--CCceEE
Confidence 48888653 23344457777666664434333 3333333 456643
No 442
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=26.68 E-value=1.1e+02 Score=20.76 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred EEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEEECCCCHHHHHH
Q 047313 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYERDVSLHMEFRDE 71 (174)
Q Consensus 26 VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~Dv~~~~~~~~e 71 (174)
..+|.++-+ ..+-..=+.++++++++ .+..+.+||..+++..++
T Consensus 4 L~Lyv~g~t--p~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~ 50 (72)
T cd02978 4 LRLYVAGRT--PKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEE 50 (72)
T ss_pred EEEEECCCC--chHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhh
Confidence 456666521 11223345667777765 456799999999986553
No 443
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.60 E-value=30 Score=22.76 Aligned_cols=18 Identities=33% Similarity=0.958 Sum_probs=8.8
Q ss_pred cccCcccccCccccCCCC
Q 047313 156 HIRCPECNENGLVKCPFC 173 (174)
Q Consensus 156 ~~rC~~CnenGl~~C~~C 173 (174)
.-.||.|.|--+.||+.|
T Consensus 25 ~F~CPnCG~~~I~RC~~C 42 (59)
T PRK14890 25 KFLCPNCGEVIIYRCEKC 42 (59)
T ss_pred EeeCCCCCCeeEeechhH
Confidence 345555555444444443
No 444
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.54 E-value=52 Score=28.54 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=11.3
Q ss_pred ccccCcccccC---ccccCCCC
Q 047313 155 LHIRCPECNEN---GLVKCPFC 173 (174)
Q Consensus 155 ~~~rC~~Cnen---Gl~~C~~C 173 (174)
+.+.|+-|.-- -.+.||.|
T Consensus 211 RyL~CslC~teW~~~R~~C~~C 232 (309)
T PRK03564 211 RYLHCNLCESEWHVVRVKCSNC 232 (309)
T ss_pred eEEEcCCCCCcccccCccCCCC
Confidence 56777777532 34556666
No 445
>PHA02558 uvsW UvsW helicase; Provisional
Probab=26.37 E-value=4.2e+02 Score=24.01 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=50.9
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe-cc-----ch
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG-GA-----DE 97 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG-G~-----de 97 (174)
.+++|++.+. .+++.+...|...+++...+.=.+....|+++.+... ......|...+..+| |+ +.
T Consensus 345 ~~~lV~~~~~-------~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~-~~~~~vLvaT~~~l~eG~Dip~ld~ 416 (501)
T PHA02558 345 ENTFVMFKYV-------EHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE-GGKGIIIVASYGVFSTGISIKNLHH 416 (501)
T ss_pred CCEEEEEEEH-------HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh-CCCCeEEEEEcceeccccccccccE
Confidence 4555655552 5899999999999999888877777676777666543 233344444555554 33 33
Q ss_pred hhhhhhcCchhHHhhcCCCC
Q 047313 98 VVGLHEQGKLKKLLEGIPRN 117 (174)
Q Consensus 98 l~~l~e~G~L~~~L~~~~~~ 117 (174)
+.-..-......+++.+++.
T Consensus 417 vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 417 VIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred EEEecCCcchhhhhhhhhcc
Confidence 33222223344445555554
No 446
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=26.21 E-value=2.5e+02 Score=20.17 Aligned_cols=43 Identities=9% Similarity=-0.123 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcE
Q 047313 39 TFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPR 84 (174)
Q Consensus 39 ~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~ 84 (174)
-|+.|.+....|+ ..++.+.-+.+.. ++..+++.+..+ ..+|.
T Consensus 40 ~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~-~~~~~~~~~~~~--~~~~~ 89 (149)
T cd03018 40 FTPVCTKELCALRDSLELFEAAGAEVLGISVDS-PFSLRAWAEENG--LTFPL 89 (149)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC-HHHHHHHHHhcC--CCceE
Confidence 4888975543333 3466666665543 333333434333 34554
No 447
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=25.98 E-value=1.6e+02 Score=18.75 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHh----C--CCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEE--ECCE
Q 047313 39 TFEDCRTIRFLLQS----F--KVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLF--IKGR 90 (174)
Q Consensus 39 ~c~~C~~vr~iL~~----~--~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vF--I~G~ 90 (174)
.|+.|..+...|.. + .+.+..+|+. .++.....+... ...+|.+. .++.
T Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~ 100 (127)
T COG0526 43 WCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVA---VRSIPTLLLFKDGK 100 (127)
T ss_pred cCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhh---hccCCeEEEEeCcc
Confidence 69999999877765 2 3678888986 666666666541 23346554 4553
No 448
>PHA03075 glutaredoxin-like protein; Provisional
Probab=25.73 E-value=94 Score=23.33 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEE
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFY 58 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~ 58 (174)
.+.+++|+++ -|+-|+.+..+|....=.|+
T Consensus 2 K~tLILfGKP------~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKP------LCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCc------ccHHHHHHHHHHHHhhcccc
Confidence 4578999998 59999999999977654443
No 449
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=25.65 E-value=1.3e+02 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=20.6
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT 56 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~ 56 (174)
.+.+|+||..+ ......+...|+..|..
T Consensus 55 ~~~~ivv~c~~-------g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCYH-------GNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeCC-------CChHHHHHHHHHHcCCc
Confidence 45688899874 45677778888888764
No 450
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.64 E-value=59 Score=24.11 Aligned_cols=8 Identities=50% Similarity=1.431 Sum_probs=4.7
Q ss_pred ccCccccc
Q 047313 157 IRCPECNE 164 (174)
Q Consensus 157 ~rC~~Cne 164 (174)
.+||.|..
T Consensus 93 ~~CP~Cgs 100 (124)
T PRK00762 93 IECPVCGN 100 (124)
T ss_pred CcCcCCCC
Confidence 45666653
No 451
>PRK11032 hypothetical protein; Provisional
Probab=25.30 E-value=65 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.497 Sum_probs=17.2
Q ss_pred CcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313 128 NIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV 168 (174)
Q Consensus 128 g~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~ 168 (174)
|.|-+.|..|+=..-. ..-. ..-.||.|+-+.-.
T Consensus 121 g~G~LvC~~Cg~~~~~--~~p~-----~i~pCp~C~~~~F~ 154 (160)
T PRK11032 121 GLGNLVCEKCHHHLAF--YTPE-----VLPLCPKCGHDQFQ 154 (160)
T ss_pred ecceEEecCCCCEEEe--cCCC-----cCCCCCCCCCCeee
Confidence 5566666666644322 1111 24667777655433
No 452
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=25.08 E-value=1.9e+02 Score=21.32 Aligned_cols=12 Identities=8% Similarity=-0.238 Sum_probs=7.3
Q ss_pred CChhHHHHHHHHH
Q 047313 39 TFEDCRTIRFLLQ 51 (174)
Q Consensus 39 ~c~~C~~vr~iL~ 51 (174)
.|+ |..-...|+
T Consensus 33 wC~-C~~e~p~l~ 44 (152)
T cd00340 33 KCG-FTPQYEGLE 44 (152)
T ss_pred CCC-chHHHHHHH
Confidence 588 877444443
No 453
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=25.04 E-value=86 Score=28.10 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCC--CcEEEECCEEE-eccc
Q 047313 44 RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVI--PPRLFIKGRYI-GGAD 96 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~--~P~vFI~G~~I-GG~d 96 (174)
..+|++|..+||++-.=-+...++-..++.+.+|+... =+||-++|+== ||..
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk 61 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVK 61 (387)
T ss_pred HHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceE
Confidence 46889999999998766666666666666666652222 28999988743 4443
No 454
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=24.75 E-value=51 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=14.1
Q ss_pred CCCCCCCCC-----cceEeCCCCCCCe
Q 047313 120 DCSCNGCGN-----IRFVLCSNCSGSC 141 (174)
Q Consensus 120 ~~~C~~Cgg-----~r~v~C~~C~Gs~ 141 (174)
...|..||. ..+..|+.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCC
Confidence 456888874 2344588888653
No 455
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=24.69 E-value=73 Score=17.24 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=6.2
Q ss_pred ccccCcccc
Q 047313 155 LHIRCPECN 163 (174)
Q Consensus 155 ~~~rC~~Cn 163 (174)
..+||+-|+
T Consensus 15 ~sVrCa~C~ 23 (25)
T PF06943_consen 15 PSVRCACCH 23 (25)
T ss_pred CCeECCccC
Confidence 367777776
No 456
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=24.33 E-value=25 Score=34.55 Aligned_cols=43 Identities=28% Similarity=0.766 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcce-EeCCCCCCCeeeeecCCCCCCccccccCcccccC-ccccCCCC
Q 047313 119 SDCSCNGCGNIRF-VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN-GLVKCPFC 173 (174)
Q Consensus 119 ~~~~C~~Cgg~r~-v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen-Gl~~C~~C 173 (174)
....|..||-..| ..|+.|++.... ..+||.|+.. .--.||.|
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~------------~~~Cp~C~~~~~~~~C~~C 698 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEP------------VYVCPDCGIEVEEDECPKC 698 (900)
T ss_dssp ---------------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCcccc------------ceeccccccccCccccccc
Confidence 4567999987654 568888877443 4566666542 12256655
No 457
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=24.31 E-value=43 Score=26.33 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCCCCcEEEEEeecCCCCCCChh--HHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccc
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFED--CRTIRFLLQS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGAD 96 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~--C~~vr~iL~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~d 96 (174)
|.+...|.|-++. .|.- ..++.+.|++ .||.+.+.+-..--.. .+. +=+|.-..-|.+.|||+++|+..
T Consensus 74 P~Gr~~i~VC~~t------~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl-~~v-~ClGaC~~AP~vmind~~~~~lt 145 (160)
T COG1905 74 PVGRHHIRVCTGT------ACHLKGSEALLKALEKKLGIKPGETTADGKFTL-EPV-ECLGACGQAPVVMINDDVYGRLT 145 (160)
T ss_pred cCCCeEEEEeCCc------HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEE-eee-eeecccccCCEEEECCchhccCC
Confidence 4556666666654 3433 2444444443 5665544432110000 000 01233567899999999999865
Q ss_pred hhhhhhhcCchhHHhhcCCC
Q 047313 97 EVVGLHEQGKLKKLLEGIPR 116 (174)
Q Consensus 97 el~~l~e~G~L~~~L~~~~~ 116 (174)
.- +|.++|+++.+
T Consensus 146 ~e-------~l~eil~~~~~ 158 (160)
T COG1905 146 PE-------KLEEILEKLKA 158 (160)
T ss_pred HH-------HHHHHHHHHhc
Confidence 43 56666665543
No 458
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=24.21 E-value=58 Score=27.35 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=48.2
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHhcCCCCCCc--------EEEECC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYER------DVSLHMEFRDELWSSLSGRVIPP--------RLFIKG 89 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~------Dv~~~~~~~~el~~~~g~~~~~P--------~vFI~G 89 (174)
-++.+|+-- +=.+-..+...|++.||+|+.. -|.-+++...+.+..+. ...+| .+|-.+
T Consensus 19 C~~~LysgL------~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La-~~GLP~~g~~~~~~lFd~~ 91 (249)
T PRK15348 19 CDVDLYRSL------PEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLR-LNGYPHRQFTTADKMFPAN 91 (249)
T ss_pred CChHHHcCC------CHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHH-HcCCCCCCCccHHHhCCcc
Confidence 356788743 3477899999999999999652 23323333233222221 11222 244333
Q ss_pred EEEecc-chhhh--hhhcCchhHHhhcCCCCC
Q 047313 90 RYIGGA-DEVVG--LHEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 90 ~~IGG~-del~~--l~e~G~L~~~L~~~~~~~ 118 (174)
..+-+. |..++ ...+|+|.+.|..+.-..
T Consensus 92 ~l~~t~te~~qki~y~regELarTI~~idgV~ 123 (249)
T PRK15348 92 QLVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 (249)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 332222 22221 234799999998877544
No 459
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.13 E-value=93 Score=18.47 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=7.7
Q ss_pred cccCcccccCcc
Q 047313 156 HIRCPECNENGL 167 (174)
Q Consensus 156 ~~rC~~CnenGl 167 (174)
...||+|....+
T Consensus 26 ~~~CP~Cg~~~~ 37 (42)
T PF09723_consen 26 PVPCPECGSTEV 37 (42)
T ss_pred CCcCCCCCCCce
Confidence 577777776443
No 460
>PRK04155 chaperone protein HchA; Provisional
Probab=24.04 E-value=2.5e+02 Score=23.85 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCCcEEEEEeecCCCC--------CCChhHHHH--HHHHHhCCCcEEEEECCCCH-------------HHHHHH---HH
Q 047313 21 GGEDSVIFYTTSLRGIR--------KTFEDCRTI--RFLLQSFKVTFYERDVSLHM-------------EFRDEL---WS 74 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir--------~~c~~C~~v--r~iL~~~~v~~~e~Dv~~~~-------------~~~~el---~~ 74 (174)
.+..+|.|..|+-+.+. .+...-+.+ ..+|+..|+.++..-++..+ ..+..+ ..
T Consensus 47 ~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~ 126 (287)
T PRK04155 47 RGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKS 126 (287)
T ss_pred CCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhh
Confidence 34448888888755432 445555444 78899999988877664321 111111 11
Q ss_pred hcCC--------------CCCCcEEEECCEEEeccchhhhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCC
Q 047313 75 SLSG--------------RVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGS 140 (174)
Q Consensus 75 ~~g~--------------~~~~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs 140 (174)
.++. ...+=.|||= ||.--+..|-++-.|.++|+.+-... -+.+..|||.
T Consensus 127 ~l~~~~~l~~v~~~~~~~~~dYDaV~iP----GG~g~~~dL~~~~~l~~ll~~~~~~~------------K~VaAICHGP 190 (287)
T PRK04155 127 KFKQPKKLADVVANLLAPDSDYAAVFIP----GGHGALIGLPESEDVAAALQWALDND------------RFIITLCHGP 190 (287)
T ss_pred hccCceeHHHhhhhhcCCcccccEEEEC----CCCchHHHHhhCHHHHHHHHHHHHcC------------CEEEEEChHH
Confidence 1110 0122233332 55555667788888999998766543 4667777777
No 461
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=24.02 E-value=95 Score=24.57 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHH------HHHhC---CCcEEEEEC
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRF------LLQSF---KVTFYERDV 62 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~------iL~~~---~v~~~e~Dv 62 (174)
++..||-|..- +||+|..... .|+.. ++.+..+.+
T Consensus 37 ~~~~VvEffdy------~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSF------YCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCC------CCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 44567777775 8999998543 23332 566666665
No 462
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=23.92 E-value=82 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=21.1
Q ss_pred EEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313 59 ERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR 90 (174)
Q Consensus 59 e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~ 90 (174)
.+=.+.|.++++.|+.. ..+|.||+...
T Consensus 67 ~~VaT~D~~Lr~~lr~~----~GvPvi~l~~~ 94 (101)
T PF04900_consen 67 YIVATQDKELRRRLRKI----PGVPVIYLRRN 94 (101)
T ss_pred EEEEecCHHHHHHHhcC----CCCCEEEEECC
Confidence 44457899999988754 45999999754
No 463
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.86 E-value=2e+02 Score=27.88 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=43.0
Q ss_pred cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC----CCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313 25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS----LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~----~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de 97 (174)
.|+|.+... .-..+.+|.+.|+..||..+.+|+. .|.+...++.+.++ ..|.|...++||+-+
T Consensus 569 dvtIia~G~-----mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~-----~vVTvEE~~~GG~Gs 635 (701)
T PLN02225 569 DVALLGYGA-----MVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHK-----FLITVEEGCVGGFGS 635 (701)
T ss_pred CEEEEeccH-----HHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcC-----eEEEEcCCCCCchHH
Confidence 455655542 4578999999999999999999984 35555555544333 456676666788743
No 464
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=23.85 E-value=2.8e+02 Score=22.93 Aligned_cols=33 Identities=6% Similarity=-0.165 Sum_probs=19.1
Q ss_pred CcEEEEEeecCCCCCCChhHHHHH-------HHHHhCCCcEEEEEC
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIR-------FLLQSFKVTFYERDV 62 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr-------~iL~~~~v~~~e~Dv 62 (174)
.-|+.|.++ .|+.|..-. +-+..+|+.+.-+++
T Consensus 101 ~vvl~FwAs------wCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 101 VLLIVNVAS------KCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred eEEEEEEcC------CCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 345555555 599996533 223345677766665
No 465
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=23.69 E-value=64 Score=23.48 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.1
Q ss_pred CCCCcEEEECCEEEeccc
Q 047313 79 RVIPPRLFIKGRYIGGAD 96 (174)
Q Consensus 79 ~~~~P~vFI~G~~IGG~d 96 (174)
..-.|.||.||+.||=-+
T Consensus 79 DECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWGD 96 (102)
T ss_pred CceEEEEEECCEEEEEcH
Confidence 345799999999997443
No 466
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.61 E-value=3.3e+02 Score=21.33 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=46.0
Q ss_pred hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCC--C-CC-cEE
Q 047313 10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR--V-IP-PRL 85 (174)
Q Consensus 10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~--~-~~-P~v 85 (174)
....|.+.....+..+|+|++.+.. .+. =++=.+|+.+-+.+||++-....... .-.+++.+..+.. . .. -.+
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaG-s~~-d~~~~~a~~~~~~lgIpvl~h~~kKP-~~~~~i~~~~~~~~~~~~p~eia 140 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAG-SSD-DPDGERAEALEKALGIPVLRHRAKKP-GCFREILKYFKCQKVVTSPSEIA 140 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCC-ccc-CccHHHHHHHHHhhCCcEEEeCCCCC-ccHHHHHHHHhhccCCCCchhEE
Confidence 3334544445556668999998742 222 34568899999999999765544333 3334444444311 1 12 366
Q ss_pred EECCEE
Q 047313 86 FIKGRY 91 (174)
Q Consensus 86 FI~G~~ 91 (174)
+|++++
T Consensus 141 vIGDrl 146 (168)
T PF09419_consen 141 VIGDRL 146 (168)
T ss_pred EEcchH
Confidence 788875
No 467
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.54 E-value=3.9e+02 Score=25.00 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=32.2
Q ss_pred CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 047313 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS 74 (174)
Q Consensus 23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~ 74 (174)
+++|+|-+-. ..-+.+-+.|.+++++|.-+|. |++..+++++
T Consensus 400 ~~~vII~G~G--------r~G~~va~~L~~~g~~vvvID~--d~~~v~~~~~ 441 (601)
T PRK03659 400 KPQVIIVGFG--------RFGQVIGRLLMANKMRITVLER--DISAVNLMRK 441 (601)
T ss_pred cCCEEEecCc--------hHHHHHHHHHHhCCCCEEEEEC--CHHHHHHHHh
Confidence 4678888765 5677888899999999999996 5666666654
No 468
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=23.50 E-value=69 Score=22.90 Aligned_cols=15 Identities=47% Similarity=0.735 Sum_probs=12.8
Q ss_pred cEEEEEeecCCCCCCChhHHH
Q 047313 25 SVIFYTTSLRGIRKTFEDCRT 45 (174)
Q Consensus 25 ~VvlYttsl~~ir~~c~~C~~ 45 (174)
+|.||..|+ ||+|.+
T Consensus 2 ~v~vyyESl------CPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESL------CPDCRR 16 (108)
T ss_pred EEEEEEEec------CHhHHH
Confidence 588999994 999976
No 469
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=23.38 E-value=30 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCC--CCcEEEECCE
Q 047313 45 TIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRV--IPPRLFIKGR 90 (174)
Q Consensus 45 ~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~--~~P~vFI~G~ 90 (174)
.++++|+.+||++-.--+..+++...+..+.+|... .=|||..+|+
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgR 53 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGR 53 (202)
T ss_dssp HHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTT
T ss_pred HHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCc
Confidence 578999999999877776666555555544445232 2278888775
No 470
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.21 E-value=64 Score=20.80 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=9.3
Q ss_pred EEEECCEEEe
Q 047313 84 RLFIKGRYIG 93 (174)
Q Consensus 84 ~vFI~G~~IG 93 (174)
.|||||+++|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 6899999999
No 471
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.15 E-value=1.3e+02 Score=21.53 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=31.4
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC----CCHHHHHH
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS----LHMEFRDE 71 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~----~~~~~~~e 71 (174)
..|+|.++.. ....+.+|.+.|++.|++...+|+. .|.+...+
T Consensus 10 ~di~iia~G~-----~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~ 56 (124)
T PF02780_consen 10 ADITIIAYGS-----MVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLE 56 (124)
T ss_dssp SSEEEEEETT-----HHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHH
T ss_pred CCEEEEeehH-----HHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHH
Confidence 4566666652 4688999999999999999888873 45554444
No 472
>PTZ00256 glutathione peroxidase; Provisional
Probab=23.10 E-value=3.2e+02 Score=21.06 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=23.6
Q ss_pred CChhHHHHHHHH-------HhCCCcEEEEECCC-------C-HHHHHHHHHhcCCCCCCcEE
Q 047313 39 TFEDCRTIRFLL-------QSFKVTFYERDVSL-------H-MEFRDELWSSLSGRVIPPRL 85 (174)
Q Consensus 39 ~c~~C~~vr~iL-------~~~~v~~~e~Dv~~-------~-~~~~~el~~~~g~~~~~P~v 85 (174)
.|+.|.+-...| ++.++.+.-+.+.. + ...++.+.+..+ .++|.+
T Consensus 52 wCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~--~~fpv~ 111 (183)
T PTZ00256 52 KCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN--VDFPLF 111 (183)
T ss_pred CCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC--CCCCCc
Confidence 499998633222 23467666665421 2 334444443433 567876
No 473
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.86 E-value=1e+02 Score=21.08 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHHhCCCcEEEE
Q 047313 39 TFEDCRTIRFLLQSFKVTFYER 60 (174)
Q Consensus 39 ~c~~C~~vr~iL~~~~v~~~e~ 60 (174)
.-.+++++.++|+.++++|+-+
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeee
Confidence 4578999999999999998765
No 474
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=22.79 E-value=1.5e+02 Score=29.50 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC----------E
Q 047313 21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG----------R 90 (174)
Q Consensus 21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G----------~ 90 (174)
..++.|..|... ..-+-....++.+.++++.+.-=-..+++.++.+..-.+ ....|. +.++ .
T Consensus 297 l~egai~~~~~~------~~~~~~~l~~l~~~~~~d~~~P~~~L~~e~~~~iLyGs~-~~~~~~-~~~~~~~~~~~~~~~ 368 (935)
T COG0178 297 LNEGAIAPWGNT------NSYYLQMLQALAEHYGFDLDTPWKDLPEEQQDIILYGSG-DEVIPF-YFNDRGGTKKRTHKP 368 (935)
T ss_pred hhcCCeecCcCC------CchHHHHHHHHHHHcCCCccCchhhCCHHHHHHHeeCCC-Ccceee-eeccccccccccccc
Confidence 344556665543 234556677777888765432111123444454433222 233333 2222 3
Q ss_pred EEeccchhhhhhhcC---chhHHhhcCCCCCCCCCCCCCCCcce
Q 047313 91 YIGGADEVVGLHEQG---KLKKLLEGIPRNLSDCSCNGCGNIRF 131 (174)
Q Consensus 91 ~IGG~del~~l~e~G---~L~~~L~~~~~~~~~~~C~~Cgg~r~ 131 (174)
|-|=...+.+.+.+- ..++.|+++ .....|..|+|.|.
T Consensus 369 feGvi~~~~rr~~et~S~~~r~~l~~y---ms~~~C~~C~G~RL 409 (935)
T COG0178 369 FEGVIPNLERRYLETESESIREELEKY---MSEKPCPSCKGTRL 409 (935)
T ss_pred eeeehhhHHHHHHhhccHHHHHHHHhh---hccCcCCCCCCccc
Confidence 455555555554443 334445442 23344555555553
No 475
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.78 E-value=1.3e+02 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCcEEEEEC
Q 047313 45 TIRFLLQSFKVTFYERDV 62 (174)
Q Consensus 45 ~vr~iL~~~~v~~~e~Dv 62 (174)
.+.++|+.++++|+++-+
T Consensus 68 ~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 68 IIILWLNQHNVPYDEIYV 85 (126)
T ss_pred HHHHHHHHcCCCCceEEe
Confidence 778999999999998876
No 476
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=22.73 E-value=50 Score=19.41 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=12.6
Q ss_pred CCCCCCCeeeeecCCCCCCccccccCcccc
Q 047313 134 CSNCSGSCKVFRDGDDDDDDELHIRCPECN 163 (174)
Q Consensus 134 C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cn 163 (174)
|+.|+.......-... ..-.|+.|.
T Consensus 2 CP~C~~~l~~~~~~~~-----~id~C~~C~ 26 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDV-----EIDVCPSCG 26 (41)
T ss_pred cCCCCcccceEEECCE-----EEEECCCCC
Confidence 6677665333322222 356677664
No 477
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.48 E-value=68 Score=18.28 Aligned_cols=10 Identities=60% Similarity=1.428 Sum_probs=6.4
Q ss_pred cccCcccccC
Q 047313 156 HIRCPECNEN 165 (174)
Q Consensus 156 ~~rC~~Cnen 165 (174)
.+||+.|.-.
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 5788888643
No 478
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=22.34 E-value=1.8e+02 Score=20.43 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313 44 RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI 92 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I 92 (174)
+..-.+|....-.+..++++. ...+++.+-+ .+.+|.+||.|.-|
T Consensus 37 ~HlNmvL~d~eetit~~e~~E--~~~e~~~k~~--~r~~emlFvRGd~V 81 (91)
T KOG3460|consen 37 EHLNMVLGDVEETITTVEIDE--DTYEEIVKTT--KRTVEMLFVRGDGV 81 (91)
T ss_pred HhhhhhhhhhhheEEEeeccc--hhHHHHHhhh--hcceeEEEEeCCeE
Confidence 334445544444566677644 3334444433 68999999988643
No 479
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=22.26 E-value=1.2e+02 Score=27.25 Aligned_cols=16 Identities=0% Similarity=0.193 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhCCCc
Q 047313 41 EDCRTIRFLLQSFKVT 56 (174)
Q Consensus 41 ~~C~~vr~iL~~~~v~ 56 (174)
-.-.+|+.|-++..++
T Consensus 311 ~NleAa~EIaRQlRLR 326 (414)
T TIGR00757 311 TNLEAAKEIARQLRLR 326 (414)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3456777777776655
No 480
>PRK05899 transketolase; Reviewed
Probab=22.24 E-value=2.8e+02 Score=26.02 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=49.0
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHH-HH---HHHHhcCCCCCCcEEEECC----------
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF-RD---ELWSSLSGRVIPPRLFIKG---------- 89 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~-~~---el~~~~g~~~~~P~vFI~G---------- 89 (174)
..|+|.++.. .-..+.+|...|++.||..+.+|+..=.-+ .+ .+...+| ...-+.|.+.+
T Consensus 511 ~dvtiia~G~-----~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg-~~~~~~v~~e~~~~~g~~~~~ 584 (624)
T PRK05899 511 PDVILIATGS-----EVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLP-AAVTARVAVEAGVADGWYKYV 584 (624)
T ss_pred CCEEEEEeCH-----HHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhcccc-ccccceEEEccCCccchhhhc
Confidence 3566666552 347788889999999999999998432111 11 1333344 44457776664
Q ss_pred ----EEEeccchhhhhhhcCchhHHhhcCCC
Q 047313 90 ----RYIGGADEVVGLHEQGKLKKLLEGIPR 116 (174)
Q Consensus 90 ----~~IGG~del~~l~e~G~L~~~L~~~~~ 116 (174)
+.|| .++ .-++|...++++.++-
T Consensus 585 ~~~~~~iG-v~~---f~~~g~~~~l~~~~gl 611 (624)
T PRK05899 585 GLDGKVLG-IDT---FGASAPADELFKEFGF 611 (624)
T ss_pred CCCceEEE-CCC---CCCCCCHHHHHHHhCC
Confidence 2333 222 3356777777666553
No 481
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=22.20 E-value=56 Score=15.99 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.1
Q ss_pred cCcccccCccc
Q 047313 158 RCPECNENGLV 168 (174)
Q Consensus 158 rC~~CnenGl~ 168 (174)
+|..|++.|-+
T Consensus 2 ~C~~C~~~GH~ 12 (18)
T PF00098_consen 2 KCFNCGEPGHI 12 (18)
T ss_dssp BCTTTSCSSSC
T ss_pred cCcCCCCcCcc
Confidence 67788887754
No 482
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=38 Score=29.77 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=5.7
Q ss_pred eCCCCCCCeee
Q 047313 133 LCSNCSGSCKV 143 (174)
Q Consensus 133 ~C~~C~Gs~k~ 143 (174)
.|..|+|+..+
T Consensus 172 ~C~~C~G~G~~ 182 (337)
T KOG0712|consen 172 VCDSCNGSGET 182 (337)
T ss_pred EeccCCCcccc
Confidence 35555555444
No 483
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=22.12 E-value=3.1e+02 Score=22.37 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=26.4
Q ss_pred EEEEECCCC----HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhcC
Q 047313 57 FYERDVSLH----MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQG 105 (174)
Q Consensus 57 ~~e~Dv~~~----~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~G 105 (174)
....|+.|. -++++.|.+. ..++|.|||-|+ |+.-...+.-+.|
T Consensus 51 clllDvrMPg~sGlelq~~L~~~---~~~~PVIfiTGh--gDIpmaV~AmK~G 98 (202)
T COG4566 51 CLLLDVRMPGMSGLELQDRLAER---GIRLPVIFLTGH--GDIPMAVQAMKAG 98 (202)
T ss_pred eEEEecCCCCCchHHHHHHHHhc---CCCCCEEEEeCC--CChHHHHHHHHcc
Confidence 456777654 4445555443 689999999996 4443333333444
No 484
>PLN02412 probable glutathione peroxidase
Probab=21.98 E-value=3.6e+02 Score=20.43 Aligned_cols=46 Identities=7% Similarity=-0.040 Sum_probs=23.0
Q ss_pred CChhHHHHH----HH---HHhCCCcEEEEECC-------CC-HHHHHHHHHhcCCCCCCcEEE
Q 047313 39 TFEDCRTIR----FL---LQSFKVTFYERDVS-------LH-MEFRDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 39 ~c~~C~~vr----~i---L~~~~v~~~e~Dv~-------~~-~~~~~el~~~~g~~~~~P~vF 86 (174)
.|+.|.+-. ++ +...|+.+.-+... .+ .+.++.+.+.. ..++|.+.
T Consensus 40 ~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~--~~~fpvl~ 100 (167)
T PLN02412 40 KCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF--KAEFPIFD 100 (167)
T ss_pred CCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHcc--CCCCceEe
Confidence 599998532 22 23345555555431 12 23344443443 36788874
No 485
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=21.95 E-value=1.5e+02 Score=21.97 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313 44 RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS 77 (174)
Q Consensus 44 ~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g 77 (174)
+++..+|++++|+|+.+.........+++.+..|
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcC
Confidence 4688999999999999888643333455666655
No 486
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.93 E-value=3.6e+02 Score=23.81 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=46.9
Q ss_pred hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh-CCCcEEEEECCCC-HHH-HHHHHHhcCCCCCCcEEE
Q 047313 10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-FKVTFYERDVSLH-MEF-RDELWSSLSGRVIPPRLF 86 (174)
Q Consensus 10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-~~v~~~e~Dv~~~-~~~-~~el~~~~g~~~~~P~vF 86 (174)
-+..|-++..+.....+.+ +... .=.+=+++..+++. .+++|..+|++.- ... .+.++.+ ...+|.++
T Consensus 82 ~~~~~v~~~~~~~~~~~~v-svG~-----~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~i---r~~~p~~~ 152 (343)
T TIGR01305 82 EWKAFATNSSPDCLQNVAV-SSGS-----SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLV---REAFPEHT 152 (343)
T ss_pred HHHHHHHhhcccccceEEE-Eecc-----CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHH---HhhCCCCe
Confidence 3445555544433334433 4432 12445788888886 4799999999753 333 3334444 23455444
Q ss_pred -ECCEEEeccchhhhhhhcC
Q 047313 87 -IKGRYIGGADEVVGLHEQG 105 (174)
Q Consensus 87 -I~G~~IGG~del~~l~e~G 105 (174)
|.| -|...+....|.+.|
T Consensus 153 viaG-NV~T~e~a~~Li~aG 171 (343)
T TIGR01305 153 IMAG-NVVTGEMVEELILSG 171 (343)
T ss_pred EEEe-cccCHHHHHHHHHcC
Confidence 344 355566666665554
No 487
>PF13156 Mrr_cat_2: Restriction endonuclease
Probab=21.88 E-value=1.3e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC
Q 047313 20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV 62 (174)
Q Consensus 20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv 62 (174)
..=.++++|.||. .....|...|+.+.+++..+++
T Consensus 73 ~~f~~rliisTt~--------~~s~nAe~~l~~q~~pv~ri~l 107 (129)
T PF13156_consen 73 SRFSRRLIISTTD--------KWSKNAEKALENQSIPVSRIGL 107 (129)
T ss_pred ccccCcEEEEcCc--------HhhHHHHHHHHcCCCCeEEEcH
Confidence 3345688898875 6789999999999999999987
No 488
>PTZ00494 tuzin-like protein; Provisional
Probab=21.68 E-value=1.1e+02 Score=28.62 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=43.4
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG 89 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G 89 (174)
.-.+|+++|-.. +|..+.-.|..+...+++-..+||...++...-+.+.+| +|.|-+-|
T Consensus 393 aHPRIvV~TG~~-----GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALg----V~nve~CG 451 (664)
T PTZ00494 393 SHPRIVALAGGS-----GGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALG----VSNVEVCG 451 (664)
T ss_pred CCCcEEEEecCC-----CCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhC----CCChhhhc
Confidence 445788888873 899999999999999999999999766555555544444 44444444
No 489
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=21.47 E-value=1.3e+02 Score=21.22 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EECC
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FIKG 89 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~G 89 (174)
+-..+.||.+.+. +=..-..+...|+.. ...++..+.+.++ ...+|.+ |+-+
T Consensus 39 Dl~~a~Vy~~~~~----~~~~~~~~~~~L~~~-----------~~~iR~~l~~~l~-lr~~P~L~F~~D 91 (104)
T PF02033_consen 39 DLSHAKVYVSILG----DEEEQEEVLEALNKA-----------AGFIRHELAKRLN-LRRVPELRFVYD 91 (104)
T ss_dssp TSSEEEEEEEESS----SHHHHHHHHHHHHHT-----------HHHHHHHHHHHTT-SSSG-EEEEEES
T ss_pred CCCEEEEEEEEec----CchhHHHHHHHHHHH-----------HHHHHHHHHhhcC-CCcCCEEEEEEC
Confidence 3356788888752 235567777777763 3567888888887 7788887 6544
No 490
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.43 E-value=65 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=18.0
Q ss_pred EeCCCCCCCeeeeecCCCCCCccccccCcccc
Q 047313 132 VLCSNCSGSCKVFRDGDDDDDDELHIRCPECN 163 (174)
Q Consensus 132 v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cn 163 (174)
++|+.|+-+-....+.+-+ +-.||.|-
T Consensus 2 llCP~C~v~l~~~~rs~vE-----iD~CPrCr 28 (88)
T COG3809 2 LLCPICGVELVMSVRSGVE-----IDYCPRCR 28 (88)
T ss_pred cccCcCCceeeeeeecCce-----eeeCCccc
Confidence 4688888886655555442 66788775
No 491
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.34 E-value=79 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.561 Sum_probs=21.8
Q ss_pred CCCCCCCC-------CcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCc
Q 047313 120 DCSCNGCG-------NIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENG 166 (174)
Q Consensus 120 ~~~C~~Cg-------g~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenG 166 (174)
...|..|. ..+.+.|.+|+-+... -.+||.|...-
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------------~~~Cp~C~s~~ 263 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------------PKTCPQCGSED 263 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCC------------CCCCCCCCCCe
Confidence 44577776 4456677777755333 46777776543
No 492
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=21.27 E-value=10 Score=27.65 Aligned_cols=26 Identities=31% Similarity=0.822 Sum_probs=17.4
Q ss_pred CCCCCCCC---------CcceEeCCCCCCCeeeee
Q 047313 120 DCSCNGCG---------NIRFVLCSNCSGSCKVFR 145 (174)
Q Consensus 120 ~~~C~~Cg---------g~r~v~C~~C~Gs~k~~~ 145 (174)
...|.-|| ..+..+|..|.|.++.+-
T Consensus 13 N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg 47 (116)
T PF01412_consen 13 NKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLG 47 (116)
T ss_dssp CTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHT
T ss_pred cCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhc
Confidence 45677776 457889999999988764
No 493
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=21.14 E-value=57 Score=29.21 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=39.5
Q ss_pred CCEEEeccchhhhhhhcCchhHHhh--cCCCCCCCCCCCCCCCcceE-----------eCCCCCCCee
Q 047313 88 KGRYIGGADEVVGLHEQGKLKKLLE--GIPRNLSDCSCNGCGNIRFV-----------LCSNCSGSCK 142 (174)
Q Consensus 88 ~G~~IGG~del~~l~e~G~L~~~L~--~~~~~~~~~~C~~Cgg~r~v-----------~C~~C~Gs~k 142 (174)
+|..+-|.+++.+..+.|..+.||- .+........|..||...-. .|+.|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 4788999999999999999999864 44433334567888765432 3788877743
No 494
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=21.02 E-value=45 Score=30.36 Aligned_cols=39 Identities=18% Similarity=0.545 Sum_probs=31.9
Q ss_pred chhHHhhcCCCCCCCCCCCCCCC---------cceEeCCCCCCCeeee
Q 047313 106 KLKKLLEGIPRNLSDCSCNGCGN---------IRFVLCSNCSGSCKVF 144 (174)
Q Consensus 106 ~L~~~L~~~~~~~~~~~C~~Cgg---------~r~v~C~~C~Gs~k~~ 144 (174)
++..+++.+........|.-||. +++-+|..|.+.||++
T Consensus 9 d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnL 56 (454)
T KOG0706|consen 9 DIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNL 56 (454)
T ss_pred hHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhcc
Confidence 45566677777766778999996 6899999999999987
No 495
>PTZ00110 helicase; Provisional
Probab=21.00 E-value=6e+02 Score=23.39 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=58.0
Q ss_pred CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-----CCEEEeccc
Q 047313 22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-----KGRYIGGAD 96 (174)
Q Consensus 22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-----~G~~IGG~d 96 (174)
...+++||..+ ...|..+...|+..+++...+.=.+..+.|+++.+..- ....+.|+- -|--|.+.+
T Consensus 376 ~~~k~LIF~~t-------~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~-~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 376 DGDKILIFVET-------KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK-TGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred cCCeEEEEecC-------hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh-cCCCcEEEEcchhhcCCCcccCC
Confidence 45689999975 57899999999999988777766666666666554442 223343332 344455555
Q ss_pred hhhhhhhcCchhHHhhcCCCCC
Q 047313 97 EVVGLHEQGKLKKLLEGIPRNL 118 (174)
Q Consensus 97 el~~l~e~G~L~~~L~~~~~~~ 118 (174)
-+..+.-...+...+..+++..
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccc
Confidence 5555555566777777777654
No 496
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.97 E-value=38 Score=30.11 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=21.5
Q ss_pred CCCCCCCCC------cceEeCCCCCCCeeeeecC
Q 047313 120 DCSCNGCGN------IRFVLCSNCSGSCKVFRDG 147 (174)
Q Consensus 120 ~~~C~~Cgg------~r~v~C~~C~Gs~k~~~~~ 147 (174)
...|..||+ .+.+.|..|.|=-|.-+-|
T Consensus 15 ~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQN 48 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN 48 (475)
T ss_pred ccccccccCccccceeeeeehhhhhhHHHHHhhc
Confidence 456999997 5789999999985555444
No 497
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=20.93 E-value=2.9e+02 Score=20.08 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=31.8
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EECCE
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FIKGR 90 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~G~ 90 (174)
..+.||.+.+. .-..-..+...|+.. ...++..+.+... .+.+|.| |+-+.
T Consensus 47 ~~AkVyvs~~~----~~~~~~~~~~~L~~~-----------~~~iR~~la~~l~-lr~~P~L~F~~D~ 98 (120)
T PRK00521 47 AHAKVYVTVLG----DEEDKEEALAALKKA-----------AGFLRSELGKRLR-LRYVPELRFVYDE 98 (120)
T ss_pred CEEEEEEEECC----CchhHHHHHHHHHHh-----------HHHHHHHHHhhCC-CccCCEEEEEECC
Confidence 45667887652 123345666667653 3456777777776 7777877 76665
No 498
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=20.91 E-value=1.7e+02 Score=21.72 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=14.3
Q ss_pred CCcEEEECCEEEeccchh
Q 047313 81 IPPRLFIKGRYIGGADEV 98 (174)
Q Consensus 81 ~~P~vFI~G~~IGG~del 98 (174)
.-|.|+.+|+.+=|+++-
T Consensus 90 KRPIi~~~~~~~iGf~~e 107 (126)
T TIGR01616 90 RRPLMDLGGIRCAGFDRE 107 (126)
T ss_pred eCCEEEECCEEEEcCCHH
Confidence 349999999988888753
No 499
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=90 Score=20.57 Aligned_cols=28 Identities=25% Similarity=0.819 Sum_probs=18.3
Q ss_pred eEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313 131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN 165 (174)
Q Consensus 131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen 165 (174)
.+.|+.|+|. -++..... .+-|+.|+.-
T Consensus 8 iLaCP~~kg~-L~~~~~~~------~L~c~~~~~a 35 (60)
T COG2835 8 ILACPVCKGP-LVYDEEKQ------ELICPRCKLA 35 (60)
T ss_pred eeeccCcCCc-ceEeccCC------EEEecccCce
Confidence 4689999998 22222222 6888888753
No 500
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=20.67 E-value=2.1e+02 Score=22.71 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=39.2
Q ss_pred CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC-CCC-HHHHHHHHHhcCCCCCCcEEEECCEEE-eccchhhh
Q 047313 24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV-SLH-MEFRDELWSSLSGRVIPPRLFIKGRYI-GGADEVVG 100 (174)
Q Consensus 24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv-~~~-~~~~~el~~~~g~~~~~P~vFI~G~~I-GG~del~~ 100 (174)
.+++||++. ..+ ...+..|+..++.+....- ..| .++.++|++. | +-.| +| ||..-+.+
T Consensus 94 ~~~~v~t~~------~~~--~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~-g----~~~v-----lveGG~~l~~~ 155 (217)
T PRK05625 94 AKTIVAVSE------AAP--SEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER-G----IKRL-----MVEGGGTLIWS 155 (217)
T ss_pred CCEEEEEcC------CCC--HHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC-C----CCEE-----EEecCHHHHHH
Confidence 467777764 111 3345778888998753210 112 3344444432 2 2233 34 67788888
Q ss_pred hhhcCchhHHh
Q 047313 101 LHEQGKLKKLL 111 (174)
Q Consensus 101 l~e~G~L~~~L 111 (174)
+.+.|-++++.
T Consensus 156 fl~~~LvDel~ 166 (217)
T PRK05625 156 MFKEGLVDEVR 166 (217)
T ss_pred HHHCCCCcEEE
Confidence 88888777764
Done!